Query psy12537
Match_columns 140
No_of_seqs 106 out of 867
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:51:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 100.0 4.5E-38 9.8E-43 277.3 11.3 136 2-138 233-375 (707)
2 COG5245 DYN1 Dynein, heavy cha 99.5 2E-13 4.3E-18 126.8 8.3 116 2-118 2982-3099(3164)
3 PF06115 DUF956: Domain of unk 62.5 1.3 2.9E-05 31.5 -1.4 20 78-97 46-65 (118)
4 KOG4404|consensus 42.1 30 0.00066 28.9 3.2 59 25-85 17-82 (350)
5 KOG0936|consensus 40.3 26 0.00055 26.3 2.3 33 79-111 110-142 (182)
6 PHA02152 hypothetical protein 38.5 51 0.0011 22.1 3.3 61 43-112 19-80 (96)
7 PF05491 RuvB_C: Holliday junc 28.8 37 0.00081 22.2 1.4 15 100-114 7-21 (76)
8 cd05030 calgranulins Calgranul 27.7 1.4E+02 0.003 19.4 4.1 54 59-113 1-59 (88)
9 PF10375 GRAB: GRIP-related Ar 27.4 67 0.0014 15.5 1.8 16 99-114 3-18 (19)
10 cd05026 S-100Z S-100Z: S-100Z 27.0 1.6E+02 0.0034 19.3 4.3 56 58-114 2-62 (93)
11 PF13559 DUF4129: Domain of un 26.6 1E+02 0.0022 18.5 3.2 32 81-112 39-70 (72)
12 PF08571 Yos1: Yos1-like; Int 23.5 45 0.00097 22.0 1.1 20 35-54 14-33 (80)
13 PF06200 tify: tify domain; I 23.2 26 0.00056 19.6 -0.1 9 91-99 9-17 (36)
14 PF12722 Hid1: High-temperatur 21.3 5.9E+02 0.013 24.0 8.3 85 30-120 253-360 (895)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=4.5e-38 Score=277.31 Aligned_cols=136 Identities=44% Similarity=0.784 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHhcCcccccC----chhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhcCC
Q psy12537 2 RGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGM 77 (140)
Q Consensus 2 ~Glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~ 77 (140)
+|+|+||.++|..+.++.++ +.++++++|+||||||||+||++|||+|||++||||++||.+|++++..+++....
T Consensus 233 ~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~ 312 (707)
T PF03028_consen 233 PGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSP 312 (707)
T ss_dssp SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccc
Confidence 69999999999998877764 56899999999999999999999999999999999999999999999999986556
Q ss_pred CCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhhCCCCCCCCC---CccCCCCCC
Q psy12537 78 GGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAP---GVVLPSSTN 138 (140)
Q Consensus 78 ~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~~~~~~~~~~---~~~~P~~~~ 138 (140)
+.+||++|+|++++++|||||||++|+|+|.+|++++|++++++++.. +.+ ++.+|...+
T Consensus 313 ~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~-l~~~~~~~~~P~~~~ 375 (707)
T PF03028_consen 313 ESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQ-LSPDSGSYSIPDSNS 375 (707)
T ss_dssp CCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-E-EET-TTTEE----SS
T ss_pred cCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhh-cccCCCCccCCcccc
Confidence 899999999999999999999999999999999999999999998653 555 677786544
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.45 E-value=2e-13 Score=126.82 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHhcCcccccC-c-hhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhcCCCC
Q psy12537 2 RGIKRNLQRTYASWSQTKLN-S-TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGG 79 (140)
Q Consensus 2 ~Glk~nl~~~~~~~~~~~~~-~-~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~~~ 79 (140)
||++.++.+.... ....++ . ...-+..|.|+|+||.+.+|-.++|-|||++|-|+++|++.+..++++.+-....+.
T Consensus 2982 p~~~~~~~dL~e~-~~~~~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D~df~f~T~~L~NIl~~nhln~ 3060 (3164)
T COG5245 2982 PETGCGYADLVEI-DRYPFDYTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNILFLNHLNA 3060 (3164)
T ss_pred CcccccHHHHHhc-CcccccceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCcchHHHHHHHHHHHHhcccccc
Confidence 5566666666532 222333 2 233478999999999999999999999999999999999999999998765335578
Q ss_pred CchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChh
Q psy12537 80 VKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSN 118 (140)
Q Consensus 80 i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~ 118 (140)
+||...|.++.+|+||||++-..|.++++.||..++..+
T Consensus 3061 ~~wg~~rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a~~ 3099 (3164)
T COG5245 3061 RKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHE 3099 (3164)
T ss_pred ccccchhhheeEeeecCccchhhhHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999655
No 3
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=62.48 E-value=1.3 Score=31.45 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=18.0
Q ss_pred CCCchhhHHhhhhhhccccc
Q psy12537 78 GGVKWDYIHGLLGNAIYGGR 97 (140)
Q Consensus 78 ~~i~w~~l~~li~~ivYGGr 97 (140)
=+|||+.+.+..+++.++||
T Consensus 46 IQIPW~eI~~V~a~V~fkgk 65 (118)
T PF06115_consen 46 IQIPWEEIDYVIASVSFKGK 65 (118)
T ss_pred EEeChhheeEEEEEEEECCC
Confidence 36999999999999999887
No 4
>KOG4404|consensus
Probab=42.15 E-value=30 Score=28.88 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHH-----HHHHHhhcc--CCCccccccChHhHHHHHHHHHHHHhhcCCCCCchhhH
Q psy12537 25 QGRALFTLAWFHAL-----IQERRTYIP--QGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYI 85 (140)
Q Consensus 25 ~~~l~f~L~~fHav-----l~eR~~y~~--~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~~~i~w~~l 85 (140)
..+|+++.+.||++ ..||.+... .-+++.|.+++.|++.-..++..-.. ......|+..
T Consensus 17 ~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~p--h~ag~qWkF~ 82 (350)
T KOG4404|consen 17 FTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEP--HKAGPQWKFA 82 (350)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCc--cccccccccC
Confidence 46899999999998 444444332 45668999999999976666554222 1233456653
No 5
>KOG0936|consensus
Probab=40.30 E-value=26 Score=26.28 Aligned_cols=33 Identities=15% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCchhhHHhhhhhhccccccCChHHHHHHHHHH
Q psy12537 79 GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYL 111 (140)
Q Consensus 79 ~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~ 111 (140)
-+.|+.++.+++++|-||.|-...=-++..+.=
T Consensus 110 iF~~~k~h~iL~EiV~GGmVlETn~neIv~av~ 142 (182)
T KOG0936|consen 110 IFNWQKVHAILAEIVMGGMVLETNMNEIVAAVD 142 (182)
T ss_pred eeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHH
Confidence 468999999999999999997776555555443
No 6
>PHA02152 hypothetical protein
Probab=38.51 E-value=51 Score=22.05 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=34.6
Q ss_pred HhhccCCCccccccChHhHHHHHHHHHHHHhh-cCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHH
Q psy12537 43 RTYIPQGWAKFYEFNDSDLNAALNILNARLSQ-DGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQ 112 (140)
Q Consensus 43 ~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~-~~~~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~ 112 (140)
.+||+.||- +.+|++-|-.++...=.. ....+-|=..--+.| =.||+--..|..-+.+++-
T Consensus 19 ~~ygnhgwi-----sp~~i~~a~~ii~vv~g~~~g~~~~~~~ew~~fi----ssgr~~~~~dy~km~~ii~ 80 (96)
T PHA02152 19 VRYGNHGWV-----SPSNIRYAENIINVVNGARFGEENKPVAEWFYFI----SSGRVYFKEDYDKMATIVG 80 (96)
T ss_pred ccccccCcc-----ChhHHHHHHHHHHhhcccchhhcCCchhhhhhhh----hcchhhHHhhHHHHHHHHh
Confidence 469999994 558898888877642110 000111111112333 2588877788777776653
No 7
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=28.77 E-value=37 Score=22.24 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHHh
Q psy12537 100 NAQDMKVLSSYLQFY 114 (140)
Q Consensus 100 d~~D~r~L~~~~~~~ 114 (140)
|..|+++|.++++.|
T Consensus 7 d~~D~~yL~~l~~~f 21 (76)
T PF05491_consen 7 DELDRRYLKTLIENF 21 (76)
T ss_dssp BHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHc
Confidence 788999999999854
No 8
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=27.66 E-value=1.4e+02 Score=19.37 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHhhc-----CCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHH
Q psy12537 59 SDLNAALNILNARLSQD-----GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113 (140)
Q Consensus 59 sDl~~~~~~l~~~~~~~-----~~~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~ 113 (140)
+|++.|+..+...+.+. ....|+++.|+.++.. .+|-.++...+..-+..+++.
T Consensus 1 ~~~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~-~~g~~~t~~~~~~~v~~i~~~ 59 (88)
T cd05030 1 TELEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEK-ELPNFLKKEKNQKAIDKIFED 59 (88)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHH-HhhHhhccCCCHHHHHHHHHH
Confidence 36677776665444321 2357899999998854 445555433334444455543
No 9
>PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins. It is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The small GTPase Arf is localised to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane [].
Probab=27.43 E-value=67 Score=15.48 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHHHh
Q psy12537 99 DNAQDMKVLSSYLQFY 114 (140)
Q Consensus 99 ~d~~D~r~L~~~~~~~ 114 (140)
.+..|++++..++=+|
T Consensus 3 e~~VDk~lisN~~l~F 18 (19)
T PF10375_consen 3 EDNVDKRLISNLLLSF 18 (19)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 4677898887766544
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=27.00 E-value=1.6e+02 Score=19.27 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=34.4
Q ss_pred hHhHHHHHHHHHHHHhhc----CCC-CCchhhHHhhhhhhccccccCChHHHHHHHHHHHHh
Q psy12537 58 DSDLNAALNILNARLSQD----GMG-GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFY 114 (140)
Q Consensus 58 ~sDl~~~~~~l~~~~~~~----~~~-~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~ 114 (140)
.++|+.|+.-+...+... +.+ .|+.+.|+.++.... |..+++..+..-+..+++++
T Consensus 2 ~~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~-~~~~~~~~~~~~v~~i~~el 62 (93)
T cd05026 2 PTQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQREL-TDFLSSQKDPMLVDKIMNDL 62 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHh-HHhcccccCHHHHHHHHHHh
Confidence 378889988886655432 223 499999999986644 33333333444556666654
No 11
>PF13559 DUF4129: Domain of unknown function (DUF4129)
Probab=26.56 E-value=1e+02 Score=18.52 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.7
Q ss_pred chhhHHhhhhhhccccccCChHHHHHHHHHHH
Q psy12537 81 KWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQ 112 (140)
Q Consensus 81 ~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~ 112 (140)
+...|-.+...+.||++--+..|.+-+...++
T Consensus 39 ~~~~lt~~ye~~~Yg~~~~~~~~~~~~~~~~~ 70 (72)
T PF13559_consen 39 ALEELTRLYERARYGGRPPSAEEFQRAREALR 70 (72)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Confidence 46777888889999999878778766665544
No 12
>PF08571 Yos1: Yos1-like; InterPro: IPR013880 In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes [].
Probab=23.47 E-value=45 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhccCCCcccc
Q psy12537 35 FHALIQERRTYIPQGWAKFY 54 (140)
Q Consensus 35 fHavl~eR~~y~~~Gw~~~Y 54 (140)
-=|++.|+|-..+.||..+-
T Consensus 14 AiAILnE~RFL~kiGw~~~~ 33 (80)
T PF08571_consen 14 AIAILNEDRFLAKIGWSSSQ 33 (80)
T ss_pred HHHHcCHHHHhccCCCCCcc
Confidence 34678899888999998864
No 13
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=23.19 E-value=26 Score=19.64 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=7.1
Q ss_pred hhccccccC
Q psy12537 91 NAIYGGRID 99 (140)
Q Consensus 91 ~ivYGGrv~ 99 (140)
.|.|||+|-
T Consensus 9 TIfY~G~V~ 17 (36)
T PF06200_consen 9 TIFYGGQVC 17 (36)
T ss_pred EEEECCEEE
Confidence 578999973
No 14
>PF12722 Hid1: High-temperature-induced dauer-formation protein
Probab=21.35 E-value=5.9e+02 Score=24.05 Aligned_cols=85 Identities=19% Similarity=0.337 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhccCC---Cccccc---cCh---HhHHHHHHHHHHHHhhcCCC--------------CCchhhHH
Q psy12537 30 FTLAWFHALIQERRTYIPQG---WAKFYE---FND---SDLNAALNILNARLSQDGMG--------------GVKWDYIH 86 (140)
Q Consensus 30 f~L~~fHavl~eR~~y~~~G---w~~~Y~---F~~---sDl~~~~~~l~~~~~~~~~~--------------~i~w~~l~ 86 (140)
..|+++-+++.-=++|.|.| |..||+ |++ .=...|+++|...++--... ..+-...+
T Consensus 253 ~~l~L~~SLlNt~~~y~p~~~~~~~lpY~~~~~~d~r~~lV~~slQlL~vlL~y~~~~~~~~~~~~~~~~~~~~~~N~~r 332 (895)
T PF12722_consen 253 LVLTLLCSLLNTVCRYDPSGNEEWGLPYNHLVFSDSREPLVTYSLQLLNVLLDYPPPSQTNSSFSSETNLTSSKPKNLFR 332 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCCccccccccccccccCcccHHHHHHHHHHHHheeCCCCCCCccccccccCcCCCCcchHHH
Confidence 46778888888889999999 999996 543 23455667666655421100 12223333
Q ss_pred hhhhhhccccccCChHHHHHHHHHHHHhcChhhh
Q psy12537 87 GLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 120 (140)
Q Consensus 87 ~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~ 120 (140)
.|=||+.-+.|...+.+-+.++++..+.
T Consensus 333 ------~yl~~lhr~~D~~fi~~gl~~iL~~pl~ 360 (895)
T PF12722_consen 333 ------NYLSKLHREEDFQFILDGLTRILNNPLQ 360 (895)
T ss_pred ------HHHhccCcHHHHHHHHHHHHHHHHhhhh
Confidence 4668899999999888888888877666
Done!