Query psy12537
Match_columns 140
No_of_seqs 106 out of 867
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:51:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 7.7E-39 2.6E-43 310.4 9.5 137 2-139 2757-2904(3245)
2 4akg_A Glutathione S-transfera 100.0 3E-37 1E-41 297.5 14.3 127 2-135 2504-2634(2695)
3 3nxa_A Protein S100-A16; S100 38.6 73 0.0025 20.1 6.0 55 59-114 4-64 (100)
4 3vej_A Ubiquitin-like protein 33.5 20 0.00067 20.0 1.5 14 78-91 4-17 (41)
5 2yy9_A Zinc finger and BTB dom 22.1 34 0.0011 22.7 1.3 22 100-121 100-121 (135)
6 3fkc_A Transcriptional regulat 20.3 1.5E+02 0.0051 18.8 4.3 20 78-98 71-90 (116)
7 2a7o_A Huntingtin interacting 19.9 73 0.0025 21.5 2.6 21 95-115 44-64 (112)
8 2lnz_A Ubiquitin-like protein 16.7 61 0.0021 19.6 1.4 16 77-92 26-41 (64)
9 3czb_A Putative transglycosyla 15.4 1.1E+02 0.0036 24.7 3.0 69 44-121 6-74 (351)
10 3htu_B Vacuolar protein-sortin 13.5 1.1E+02 0.0037 16.6 1.8 13 95-108 1-13 (39)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=7.7e-39 Score=310.44 Aligned_cols=137 Identities=40% Similarity=0.770 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHhcCcccccC--chhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhc----
Q psy12537 2 RGIKRNLQRTYASWSQTKLN--STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQD---- 75 (140)
Q Consensus 2 ~Glk~nl~~~~~~~~~~~~~--~~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~---- 75 (140)
+|||+||+|+|.+++++.++ +.+|++++|+|||||||++||++|||+|||++||||++||++|+++|+.+++..
T Consensus 2757 ~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~ 2836 (3245)
T 3vkg_A 2757 PGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGR 2836 (3245)
T ss_dssp SSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHHHHHHHHhcccc
Confidence 69999999999998888776 678889999999999999999999999999999999999999999999999752
Q ss_pred ---CCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhhCCCCCCCCC--CccCCCCCCC
Q psy12537 76 ---GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAP--GVVLPSSTNL 139 (140)
Q Consensus 76 ---~~~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~~~~~~~~~~--~~~~P~~~~~ 139 (140)
.++.|||++|+||+|+|+|||||||+||||+|.+|+++||+++++++++. +.| .|.+|.++++
T Consensus 2837 ~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~ 2904 (3245)
T 3vkg_A 2837 SNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFP-LVPSIGLSVPEGTTR 2904 (3245)
T ss_dssp SCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCE-EEGGGTEECCCCSSH
T ss_pred cccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCccc-CCCCCCCCCCCCCCH
Confidence 13679999999999999999999999999999999999999999997753 655 3678876653
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=3e-37 Score=297.54 Aligned_cols=127 Identities=28% Similarity=0.576 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHhcCcccccC----chhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhcCC
Q psy12537 2 RGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGM 77 (140)
Q Consensus 2 ~Glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~ 77 (140)
+|+|+||+|+|.. +.++ +.+|++++|+|||||||++||++|||+|||++||||++||++|+++++.+++...+
T Consensus 2504 ~Glkanl~r~~~~---~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~ 2580 (2695)
T 4akg_A 2504 PGILDTVKDLWGS---QFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNST 2580 (2695)
T ss_dssp CCHHHHHHHHHHH---GGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHHHHHHHHHHHHHHHHSCS
T ss_pred hhHHHHHHHHhhh---HHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhHHHHHHHHHHHHHHhcCC
Confidence 6999999999943 3332 67899999999999999999999999999999999999999999999999985334
Q ss_pred CCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhhCCCCCCCCCCccCCC
Q psy12537 78 GGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPS 135 (140)
Q Consensus 78 ~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 135 (140)
+.|||++|+||+|+|+|||||||+||||+|.+|+++||++ +++ +.+.|++.+|.
T Consensus 2581 ~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~~-~~~~~~~~~~~ 2634 (2695)
T 4akg_A 2581 NNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SDN-LQIVPGVRIPQ 2634 (2695)
T ss_dssp CSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SSB-CCSSSSCCCBC
T ss_pred CCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CCC-cccCCCcCcCC
Confidence 7899999999999999999999999999999999999998 333 34777766653
No 3
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=38.55 E-value=73 Score=20.08 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHHhhcC------CCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHh
Q psy12537 59 SDLNAALNILNARLSQDG------MGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFY 114 (140)
Q Consensus 59 sDl~~~~~~l~~~~~~~~------~~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~ 114 (140)
++|+.++.-+...+.... .+.|+.+.|+.++.. ..|..+++..+...+..+++.+
T Consensus 4 t~le~~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~-~~~~~l~~~~~~~ev~~~i~~~ 64 (100)
T 3nxa_A 4 TELEKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQK-ELNHMLSDTGNRKAADKLIQNL 64 (100)
T ss_dssp CHHHHHHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHH-HSTTTTCSSHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHH-HccccccccccHHHHHHHHHHh
Confidence 567888877776665321 367999999998855 3466677766666777777653
No 4
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=33.52 E-value=20 Score=19.97 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=11.7
Q ss_pred CCCchhhHHhhhhh
Q psy12537 78 GGVKWDYIHGLLGN 91 (140)
Q Consensus 78 ~~i~w~~l~~li~~ 91 (140)
-++||+.|+.++.+
T Consensus 4 l~VPWd~Ie~lL~~ 17 (41)
T 3vej_A 4 LTVPWDDIEALLKN 17 (41)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred eecCHHHHHHHHHH
Confidence 36999999999955
No 5
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=22.14 E-value=34 Score=22.74 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHHhcChhhhC
Q psy12537 100 NAQDMKVLSSYLQFYFSSNVAK 121 (140)
Q Consensus 100 d~~D~r~L~~~~~~~~~~~~~~ 121 (140)
+..+..-|...|.+++......
T Consensus 100 ~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 100 KELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp HHTTCHHHHHHHHHCCC-----
T ss_pred HHhCcHHHHHHHHHHHHHhccC
Confidence 3444556777777777766544
No 6
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=20.27 E-value=1.5e+02 Score=18.82 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=15.4
Q ss_pred CCCchhhHHhhhhhhcccccc
Q psy12537 78 GGVKWDYIHGLLGNAIYGGRI 98 (140)
Q Consensus 78 ~~i~w~~l~~li~~ivYGGrv 98 (140)
..++-+.++.++ +-+|+|++
T Consensus 71 ~~~~~~~f~~~l-~~~Ytg~~ 90 (116)
T 3fkc_A 71 SFIRAEIFAEIL-NYIYSSKI 90 (116)
T ss_dssp CSSCHHHHHHHH-HHHTTSCC
T ss_pred CCCCHHHHHHHH-HhhcCCCc
Confidence 356677777777 77999999
No 7
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=19.85 E-value=73 Score=21.46 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=15.2
Q ss_pred ccccCChHHHHHHHHHHHHhc
Q psy12537 95 GGRIDNAQDMKVLSSYLQFYF 115 (140)
Q Consensus 95 GGrv~d~~D~r~L~~~~~~~~ 115 (140)
-||||+..|.+.|..=+...+
T Consensus 44 ~GRITs~EDFK~LaRKLTh~V 64 (112)
T 2a7o_A 44 VGRITTTEDFKHLARKLTHGV 64 (112)
T ss_dssp SSBCCCHHHHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHH
Confidence 489999999887765444443
No 8
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=16.74 E-value=61 Score=19.57 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=13.1
Q ss_pred CCCCchhhHHhhhhhh
Q psy12537 77 MGGVKWDYIHGLLGNA 92 (140)
Q Consensus 77 ~~~i~w~~l~~li~~i 92 (140)
+-++||+.|+.++.+-
T Consensus 26 ~l~VPWd~Ie~lL~n~ 41 (64)
T 2lnz_A 26 ELTVPWDDIEALLKNN 41 (64)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 4579999999998763
No 9
>3czb_A Putative transglycosylase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Caulobacter crescentus}
Probab=15.42 E-value=1.1e+02 Score=24.67 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=47.7
Q ss_pred hhccCCCccccccChHhHHHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhhC
Q psy12537 44 TYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAK 121 (140)
Q Consensus 44 ~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~~ 121 (140)
++.+..|+.-=.|++.|+..++..+..-... ...-.|..+|-....+ +..|-.-...++++.|.+--+.
T Consensus 6 ~~~~~~~~~Lpgw~~dd~~~a~~af~~sC~~--~~~~~w~~~C~~A~~~-------~~~~~~~ar~ffe~~F~~~~~~ 74 (351)
T 3czb_A 6 MPAALSFAGLAGWAEEDHLAALNAFRAGCGV--SKDPAAARVCGLAKAT-------KDLDVSGAKAFIEANFRVEAVD 74 (351)
T ss_dssp CCCBSSSTTCTTTTTSCHHHHHHHHHHHHTT--CCCSHHHHHHHHHHHC-------CCCCHHHHHHHHHHHEEEEEGG
T ss_pred cccccCHHHCCCCccccHHHHHHHHHHHhhh--hchHHHHHHHHHHHhc-------CCCCHHHHHHHHHHhcEEEEEc
Confidence 4678888888889999999999888765542 2224699998877553 2223334677888888765543
No 10
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=13.45 E-value=1.1e+02 Score=16.63 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=8.5
Q ss_pred ccccCChHHHHHHH
Q psy12537 95 GGRIDNAQDMKVLS 108 (140)
Q Consensus 95 GGrv~d~~D~r~L~ 108 (140)
|++|| +.|+.+|.
T Consensus 1 ~skiT-~qDrAIL~ 13 (39)
T 3htu_B 1 GSRVT-EQDKAILQ 13 (39)
T ss_dssp CCCCC-HHHHHHHH
T ss_pred CCccc-HhHHHHHH
Confidence 56775 56777763
Done!