Query psy12537
Match_columns 140
No_of_seqs 106 out of 867
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 21:51:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12537.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12537hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1in4a1 a.4.5.11 (A:255-329) H 44.4 6.5 0.00047 23.3 2.2 16 100-115 4-19 (75)
2 d1ixsb1 a.4.5.11 (B:243-318) H 22.2 6.8 0.0005 23.3 -0.5 15 100-114 4-18 (76)
3 d2uuyb1 g.8.1.3 (B:24-74) Tryp 19.1 17 0.0012 19.1 0.7 8 46-53 3-10 (51)
4 d2fgea3 d.185.1.1 (A:272-539) 13.8 1.6E+02 0.011 20.1 5.4 43 56-98 121-165 (268)
5 d2cchb2 a.74.1.1 (B:309-432) C 12.7 1.1E+02 0.0083 18.5 3.9 35 38-72 52-90 (124)
6 d1m6ja_ c.1.1.1 (A:) Triosepho 12.1 85 0.0062 21.9 3.4 41 56-102 184-224 (260)
7 d1hg3a_ c.1.1.1 (A:) Triosepho 12.1 46 0.0033 22.4 1.8 18 91-108 177-194 (224)
8 d1zfsa1 a.39.1.2 (A:1-93) Calc 12.0 1.3E+02 0.0095 16.9 4.5 54 59-113 2-60 (93)
9 d2cyya1 a.4.5.32 (A:5-64) Puta 11.7 66 0.0048 17.0 2.1 13 100-112 2-14 (60)
10 d1iyka2 d.108.1.2 (A:225-451) 11.5 63 0.0046 22.6 2.4 35 55-89 45-80 (227)
No 1
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=44.37 E-value=6.5 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHHhc
Q psy12537 100 NAQDMKVLSSYLQFYF 115 (140)
Q Consensus 100 d~~D~r~L~~~~~~~~ 115 (140)
|..|+++|.++++.|=
T Consensus 4 d~~Dr~yL~~l~~~f~ 19 (75)
T d1in4a1 4 DEFDRKILKTIIEIYR 19 (75)
T ss_dssp CHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7899999999998753
No 2
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=22.18 E-value=6.8 Score=23.27 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHh
Q psy12537 100 NAQDMKVLSSYLQFY 114 (140)
Q Consensus 100 d~~D~r~L~~~~~~~ 114 (140)
|..|+++|+++++.|
T Consensus 4 d~~Dr~~L~~l~~~f 18 (76)
T d1ixsb1 4 EKRDREILEVLILRF 18 (76)
T ss_dssp CHHHHHHHHTTTSSS
T ss_pred CHHHHHHHHHHHHHh
Confidence 789999999988754
No 3
>d2uuyb1 g.8.1.3 (B:24-74) Tryptase inhibitor {Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]}
Probab=19.09 E-value=17 Score=19.09 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=6.0
Q ss_pred ccCCCccc
Q psy12537 46 IPQGWAKF 53 (140)
Q Consensus 46 ~~~Gw~~~ 53 (140)
.|+||+.|
T Consensus 3 vpigwsep 10 (51)
T d2uuyb1 3 VPIGWSEP 10 (51)
T ss_dssp CCTTCCCC
T ss_pred ccccccch
Confidence 47888876
No 4
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.79 E-value=1.6e+02 Score=20.10 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=26.9
Q ss_pred cChHhHHHHHHHHHHHHhhcCCCCCch--hhHHhhhhhhcccccc
Q psy12537 56 FNDSDLNAALNILNARLSQDGMGGVKW--DYIHGLLGNAIYGGRI 98 (140)
Q Consensus 56 F~~sDl~~~~~~l~~~~~~~~~~~i~w--~~l~~li~~ivYGGrv 98 (140)
|+...++++++.+.--......+..|. ..+..+++..+|||.-
T Consensus 121 ~d~~~i~~~l~~~E~~~re~~~~~~~~Gl~~~~~~~~~~~~g~dp 165 (268)
T d2fgea3 121 FDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDP 165 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCS
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCCH
Confidence 777788888877763333223344453 3345578888999864
No 5
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.68 E-value=1.1e+02 Score=18.47 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHHHHHhhccCCCcccc----ccChHhHHHHHHHHHHHH
Q psy12537 38 LIQERRTYIPQGWAKFY----EFNDSDLNAALNILNARL 72 (140)
Q Consensus 38 vl~eR~~y~~~Gw~~~Y----~F~~sDl~~~~~~l~~~~ 72 (140)
+...|+-.+...|+..- .+++.|+..|+..+....
T Consensus 52 i~lar~~l~~~~W~~~L~~~t~y~~~~l~~c~~~L~~~~ 90 (124)
T d2cchb2 52 FHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTY 90 (124)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34455555555577652 267888888887776544
No 6
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}
Probab=12.08 E-value=85 Score=21.88 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=25.4
Q ss_pred cChHhHHHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChH
Q psy12537 56 FNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQ 102 (140)
Q Consensus 56 F~~sDl~~~~~~l~~~~~~~~~~~i~w~~l~~li~~ivYGGrv~d~~ 102 (140)
-+..+.+.....+..++.+.-. . ....-+ .++|||-|..+.
T Consensus 184 a~~~~i~~~~~~Ir~~l~~~~~----~-~~~~~v-~ilYGGSV~~~N 224 (260)
T d1m6ja_ 184 ATPDQAQEVHQYIRKWMTENIS----K-EVAEAT-RIQYGGSVNPAN 224 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTC----H-HHHHHS-CEEECSCCCTTT
T ss_pred cChHHHHHHHHHHHHHHHhhcc----h-hhcCCC-cEEEcCCCCHhH
Confidence 5677888888888877652111 0 011111 589999998665
No 7
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=12.06 E-value=46 Score=22.45 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.8
Q ss_pred hhccccccCChHHHHHHH
Q psy12537 91 NAIYGGRIDNAQDMKVLS 108 (140)
Q Consensus 91 ~ivYGGrv~d~~D~r~L~ 108 (140)
.++|||-|....|...+.
T Consensus 177 ~vlygGsV~~~n~~~~~~ 194 (224)
T d1hg3a_ 177 KVLCGAGISTGEDVKKAI 194 (224)
T ss_dssp EEEEESSCCSHHHHHHHH
T ss_pred ceEEeCCcCCHHHHHHHH
Confidence 589999999999887643
No 8
>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}
Probab=12.04 E-value=1.3e+02 Score=16.92 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHhh----c-CCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHH
Q psy12537 59 SDLNAALNILNARLSQ----D-GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113 (140)
Q Consensus 59 sDl~~~~~~l~~~~~~----~-~~~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~ 113 (140)
|+|+.+++.+...+.. - +.+.++-+.|+.++.... ........|...+..+++.
T Consensus 2 s~lE~~i~~l~~~F~~y~d~dg~~G~is~~El~~~L~~~~-~~~~~~~~~~~~~~~~~~~ 60 (93)
T d1zfsa1 2 SELETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTEL-SSFLDVQKDADAVDKIMKE 60 (93)
T ss_dssp CHHHHHHHHHHHHHHHHGGGSSCCSSEEHHHHHHHHHHHS-TTTSCCSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCEecHHHHHHHHHHhc-ccccccCCCHHHHHHHHHH
Confidence 4677777666554432 1 234688888888875532 2222234444455555543
No 9
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.72 E-value=66 Score=16.98 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHH
Q psy12537 100 NAQDMKVLSSYLQ 112 (140)
Q Consensus 100 d~~D~r~L~~~~~ 112 (140)
|+.|+++|..+-+
T Consensus 2 D~~D~~Il~~L~~ 14 (60)
T d2cyya1 2 DEIDKKIIKILQN 14 (60)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7889999988876
No 10
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=11.46 E-value=63 Score=22.62 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=21.6
Q ss_pred ccChHhHHHHHHHHHHHHhhcC-CCCCchhhHHhhh
Q psy12537 55 EFNDSDLNAALNILNARLSQDG-MGGVKWDYIHGLL 89 (140)
Q Consensus 55 ~F~~sDl~~~~~~l~~~~~~~~-~~~i~w~~l~~li 89 (140)
+....|...+.++++.++.+.+ ...+.=+.++..+
T Consensus 45 ~M~~kDv~~V~~LL~~yl~~f~l~~~F~~eev~Hwf 80 (227)
T d1iyka2 45 PMTGKDVSTVLSLLYKYQERFDIVQLFTEEEFKHWM 80 (227)
T ss_dssp ECCGGGHHHHHHHHHHHHTTSSEEEECCHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHcCcceEecCHHHHHHhh
Confidence 3788888888888888876432 2233344444443
Done!