RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12537
(140 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 142 bits (360), Expect = 2e-40
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 2 RGIKRNLQRTYASWS-QTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
GI ++ + S K++ F L+WFHALI R +P G++K Y FND D
Sbjct: 2504 PGILDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCD 2563
Query: 61 LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 120
A L L+ + + W + + +YGG+ID +D++V++ F +
Sbjct: 2564 FQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCGS-- 2621
Query: 121 KTASTPLAPGVVLPSS 136
+ + PGV +P
Sbjct: 2622 --DNLQIVPGVRIPQP 2635
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 138 bits (349), Expect = 4e-39
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 12/149 (8%)
Query: 2 RGIKRNLQRTYASWSQTKLNSTDQ--GRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
G+K NL T+ T+++ R F LAWFHA+IQER YIP GW KF+EFND+
Sbjct: 2757 PGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDA 2816
Query: 60 DLNAALNILNARLSQDGMGG-------VKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQ 112
DL AL+ ++ + G + W + +LG+ IYGGRIDN DM++L S+L+
Sbjct: 2817 DLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLE 2876
Query: 113 FYFSSNVAKTASTPLAPGV--VLPSSTNL 139
F+ + PL P + +P T
Sbjct: 2877 QLFTPSAFNP-DFPLVPSIGLSVPEGTTR 2904
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.011
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 102 QDMKVLSSYLQFYFSSNVAKTASTP-LAPGVVLPSS 136
Q +K L + L+ Y AP + + ++
Sbjct: 20 QALKKLQASLKLY----------ADDSAPALAIKAT 45
Score = 27.2 bits (59), Expect = 1.6
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 11/39 (28%)
Query: 2 RGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQ 40
+ +K+ LQ + KL + D A LA A ++
Sbjct: 20 QALKK-LQ------ASLKLYADDSAPA---LA-IKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.059
Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 40/158 (25%)
Query: 6 RNLQRTYASWSQTKLNSTDQGRALFTLAWFHAL-IQER-RTYIPQG-------------- 49
R L ++ S L T +F A +QE+ +P+
Sbjct: 7 RPLTLSHGSLEHVLLVPTAS--------FFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 50 --WAKFYEF-----NDSDLNAALNILNARLS---QDGMGGVKWDYIHGLLGNAIYGGRID 99
KF + S + +LN L+ + G + IH L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---NDIHALAAKLLQENDTT 115
Query: 100 NAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSST 137
+ +++ +Y + +AK + + +
Sbjct: 116 LVKTKELIKNY---ITARIMAKRPFDKKSNSALFRAVG 150
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.060
Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 49/154 (31%)
Query: 8 LQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNI 67
L+ Y + + + + + ++ R YI Q + +ND+ + A N+
Sbjct: 87 LRINY-KFLMSPIKTEQRQPSM-----------MTRMYIEQ---RDRLYNDNQVFAKYNV 131
Query: 68 --------LNARLSQ---------DGMGGV-KW--------DY-IHGLLGNAIY----GG 96
L L + DG+ G K Y + + I+
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 97 RIDNAQDMKVLSS-YLQF--YFSSNVAKTASTPL 127
+++L Q ++S +++ L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase,
geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl
diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB:
2onh_A*
Length = 543
Score = 28.2 bits (62), Expect = 0.94
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 4 IKRNLQRTYASWSQTKLNSTDQGRALFTLA-WFHALIQERRTYIPQGWAKFYEFNDSD 60
K L Y K + R L++ + F L R F F + +
Sbjct: 73 FKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLL---REHGFQVAQEVFDSFKNEE 127
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF,
lyase, mycobacteria, complex with CDP; HET: CDP IPE;
2.2A {Mycobacterium smegmatis}
Length = 165
Score = 26.3 bits (59), Expect = 3.1
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 77 MGGVKWDYIHGLLG 90
+ +++D G G
Sbjct: 25 LLCLEFDDADGCAG 38
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein,
all alpha, structural genomi NPPSFA; 1.90A {Thermus
thermophilus} SCOP: a.152.1.4
Length = 137
Score = 26.1 bits (57), Expect = 3.1
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 34 WFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDG 76
A+ + +P+ E L + + G
Sbjct: 28 VLQAMAENLGEGLPRAIPLLAEKAPGLLLEHGRSWTYAMPEKG 70
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 25.2 bits (56), Expect = 9.0
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 11/40 (27%)
Query: 85 IHGLLGNA-------IYGGRI----DNAQDMKVLSSYLQF 113
+ G+ I+ G+I D QD+ + L
Sbjct: 77 LEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 116
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 25.3 bits (56), Expect = 9.9
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 27/96 (28%)
Query: 6 RNLQRTY----ASWSQTKLNSTDQGRALFTLAWFHALIQERRTYI--------------- 46
N T+ +W Q +++G+A LA+ L+ R+ +I
Sbjct: 498 PNAPETFQRSKLNWKQ---QHSEEGKAW--LAFTRELLLLRQKHIVPLLSAARESSGTVL 552
Query: 47 ---PQGWAKFYEFNDSDLNAALNILNARLSQDGMGG 79
P A + F L+ ALNI + + G
Sbjct: 553 QTAPGFIAVSWRFPGGTLSLALNISATTVLLPDLPG 588
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.407
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,072,495
Number of extensions: 107268
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 16
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)