BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12540
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
          Deoxythymidine Monophosphate (Azt-Mp)
 pdb|2TMK|B Chain B, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
          Deoxythymidine Monophosphate (Azt-Mp)
 pdb|1TMK|A Chain A, Yeast Thymidylate Kinase Complexed With Thymidine
          Monophosphate (Dtmp)
 pdb|1TMK|B Chain B, Yeast Thymidylate Kinase Complexed With Thymidine
          Monophosphate (Dtmp)
 pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
 pdb|3TMK|B Chain B, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
 pdb|3TMK|C Chain C, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
 pdb|3TMK|D Chain D, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
 pdb|3TMK|E Chain E, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
 pdb|3TMK|F Chain F, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
 pdb|3TMK|G Chain G, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
 pdb|3TMK|H Chain H, Crystal Structure Of Yeast Thymidylate Kinase Complexed
          With The Bisubstrate Inhibitor Tp5a At 2.0 A
          Resolution: Implications For Catalysis And Azt
          Activation
          Length = 216

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 1  MLFSALVALCAFLKRKRKSKLIGGPVQAYLSD 32
          +L+  L   C  LK   +S  IGG +  YL+D
Sbjct: 24 ILYKKLQPNCKLLKFPERSTRIGGLINEYLTD 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,533,054
Number of Sequences: 62578
Number of extensions: 33956
Number of successful extensions: 86
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 1
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)