Query psy12540
Match_columns 79
No_of_seqs 107 out of 168
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 21:55:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 75.8 13 0.00043 27.1 7.3 62 7-68 133-195 (266)
2 4hxt_A De novo protein OR329; 68.2 20 0.00067 22.8 6.2 65 11-75 133-205 (252)
3 3ltj_A Alpharep-4; protein eng 66.4 21 0.00073 22.4 6.4 55 10-67 18-72 (201)
4 4hxt_A De novo protein OR329; 65.2 23 0.0008 22.4 6.3 64 11-74 49-120 (252)
5 2x49_A INVA, invasion protein 58.5 6.1 0.00021 29.7 2.6 21 57-77 147-167 (333)
6 2b6c_A Hypothetical protein EF 58.2 9.1 0.00031 26.2 3.3 37 9-45 161-198 (220)
7 4db6_A Armadillo repeat protei 57.0 33 0.0011 21.4 6.1 64 11-74 59-130 (210)
8 1w63_A Adapter-related protein 54.8 46 0.0016 25.6 7.1 58 14-71 321-381 (618)
9 2ilr_A Protein FACE, fanconi a 53.7 14 0.00047 27.3 3.8 56 10-65 95-153 (264)
10 1oyz_A Hypothetical protein YI 53.3 35 0.0012 22.6 5.5 60 11-70 59-121 (280)
11 1oyz_A Hypothetical protein YI 52.6 46 0.0016 22.0 6.0 20 15-34 137-156 (280)
12 3myd_A Flagellar biosynthesis 51.9 9 0.00031 29.1 2.6 21 57-77 174-194 (365)
13 4a5p_A Protein MXIA, protein V 51.6 9.1 0.00031 29.4 2.6 22 57-78 197-218 (383)
14 3a5i_A Flagellar biosynthesis 50.6 10 0.00034 29.2 2.7 22 57-78 203-224 (389)
15 3ltm_A Alpha-REP4; protein eng 49.4 47 0.0016 20.9 6.4 25 11-35 24-48 (211)
16 3mix_A Flagellar biosynthesis 49.3 11 0.00038 28.8 2.8 21 58-78 193-213 (382)
17 3l9t_A Putative uncharacterize 49.3 11 0.00038 27.5 2.6 36 9-44 180-216 (240)
18 2bpt_A Importin beta-1 subunit 47.9 66 0.0022 24.5 6.8 62 10-71 99-166 (861)
19 2f4m_B UV excision repair prot 47.7 8.7 0.0003 22.5 1.6 18 24-41 25-42 (61)
20 1ibr_B P95, importin beta-1 su 47.3 62 0.0021 22.4 6.2 58 9-67 4-64 (462)
21 3jxy_A Alkylpurine DNA glycosy 47.2 24 0.00082 24.2 4.0 51 12-63 172-222 (232)
22 1te4_A Conserved protein MTH18 44.0 26 0.00087 21.0 3.4 48 11-61 47-95 (131)
23 4db8_A Armadillo-repeat protei 43.1 63 0.0022 20.6 6.5 64 11-74 101-172 (252)
24 4db6_A Armadillo repeat protei 39.8 67 0.0023 20.0 6.6 64 11-74 101-172 (210)
25 3ltm_A Alpha-REP4; protein eng 39.8 69 0.0023 20.1 6.4 20 15-34 90-109 (211)
26 1pve_A HHR23B, UV excision rep 39.6 13 0.00044 22.5 1.5 18 24-41 27-44 (72)
27 1b3u_A Protein (protein phosph 36.8 92 0.0032 22.3 5.9 56 15-70 173-233 (588)
28 1te4_A Conserved protein MTH18 36.2 46 0.0016 19.8 3.7 48 11-61 78-126 (131)
29 2qk2_A LP04448P; mini spindles 35.4 92 0.0031 20.3 6.9 58 11-68 138-204 (242)
30 2qk2_A LP04448P; mini spindles 35.3 92 0.0031 20.3 7.8 67 7-73 99-167 (242)
31 1b3u_A Protein (protein phosph 34.8 93 0.0032 22.3 5.6 53 17-69 59-116 (588)
32 4fdd_A Transportin-1; heat rep 34.5 94 0.0032 24.3 6.0 63 12-74 96-162 (852)
33 2x19_B Importin-13; nuclear tr 32.5 1.4E+02 0.0047 23.5 6.6 63 10-73 28-92 (963)
34 3p1x_A Interleukin enhancer-bi 32.2 17 0.00058 21.1 1.1 24 50-73 52-75 (75)
35 1jb0_J Photosystem 1 reaction 31.5 16 0.00056 20.1 0.9 21 25-45 21-41 (41)
36 2qk1_A Protein STU2; STU2P, XM 31.3 1.2E+02 0.0042 20.5 8.5 68 5-72 103-178 (249)
37 2qsf_X RAD23, UV excision repa 30.7 24 0.00082 24.4 1.9 18 24-41 47-64 (171)
38 2vgl_B AP-2 complex subunit be 30.4 1.8E+02 0.006 22.0 6.8 62 11-72 126-192 (591)
39 3m1i_C Exportin-1; heat repeat 29.9 63 0.0022 26.3 4.4 62 10-72 20-82 (1049)
40 3ltj_A Alpharep-4; protein eng 29.5 1E+02 0.0035 19.1 6.6 21 14-34 84-104 (201)
41 2x1g_F Cadmus; transport prote 29.4 51 0.0017 26.2 3.7 63 11-74 12-75 (971)
42 1w63_A Adapter-related protein 29.1 1.9E+02 0.0067 22.1 8.1 67 11-77 112-179 (618)
43 1t06_A Hypothetical protein; s 28.9 73 0.0025 21.9 4.1 33 14-46 159-191 (235)
44 1dvp_A HRS, hepatocyte growth 28.9 59 0.002 22.1 3.6 38 11-48 29-66 (220)
45 2bpt_A Importin beta-1 subunit 28.4 99 0.0034 23.5 5.1 57 9-66 7-67 (861)
46 1qgr_A Protein (importin beta 28.3 1.3E+02 0.0045 22.8 5.7 59 9-67 4-64 (876)
47 2jdq_A Importin alpha-1 subuni 27.0 1.6E+02 0.0053 20.3 6.7 63 11-73 69-140 (450)
48 2kx7_A Sensor-like histidine k 26.6 22 0.00075 23.6 1.0 24 13-36 10-33 (117)
49 3bu8_A Telomeric repeat-bindin 24.7 2.1E+02 0.007 20.9 6.2 57 3-72 89-145 (235)
50 2vgl_B AP-2 complex subunit be 23.6 96 0.0033 23.5 4.2 62 14-76 94-157 (591)
51 3b34_A Aminopeptidase N; prote 21.9 3.5E+02 0.012 22.6 8.3 63 12-75 815-883 (891)
52 4db8_A Armadillo-repeat protei 21.7 1.6E+02 0.0055 18.6 6.2 64 11-74 143-214 (252)
53 2jdq_A Importin alpha-1 subuni 21.5 2E+02 0.007 19.7 6.8 64 11-74 239-310 (450)
54 1ibr_B P95, importin beta-1 su 21.4 2E+02 0.007 19.7 7.8 57 13-69 224-288 (462)
55 4fdd_A Transportin-1; heat rep 21.0 2.8E+02 0.0095 21.6 6.4 62 9-71 16-80 (852)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=75.79 E-value=13 Score=27.06 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhh-hhhcccCCCHHHHHHHHHHHHHHH
Q psy12540 7 VALCAFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYP-LTVASKSNSSSRRNAANKILQSMC 68 (79)
Q Consensus 7 ~~~~~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYP-LtVA~KS~s~~R~~aA~~Il~~mr 68 (79)
+.=+++-|+..+.+.||+.+.++|..+-+.+|-.-+++ +.-+.||.+.+=|......+..|-
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999888886665 446788888633333444444443
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=68.23 E-value=20 Score=22.77 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=47.9
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchh--------hhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQA--------LVYPLTVASKSNSSSRRNAANKILQSMCDLSPLLV 75 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQA--------LvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~LV 75 (79)
++.-++++++.++......|..+....|.. .+-+|.=..++++..-+..|-..+.++..+++...
T Consensus 133 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 133 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 445567788889999999999998876654 45555555677777777888888888887666543
No 3
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=66.44 E-value=21 Score=22.39 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCHHHHHHHHHHHHHH
Q psy12540 10 CAFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSSSRRNAANKILQSM 67 (79)
Q Consensus 10 ~~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~~R~~aA~~Il~~m 67 (79)
.++..++++++.+|......|..+|. | ..+-+|.-..++++..-|..|-..+.++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~--~-~~~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGD--E-RAVEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCC--G-GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCC--h-hHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34555666666666666666665553 1 2233344444454444444444444444
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=65.21 E-value=23 Score=22.39 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=49.4
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCch--------hhhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQ--------ALVYPLTVASKSNSSSRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQ--------ALvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~L 74 (79)
++.-+.++++.++......|..+....|. -.+-+|.=..++++..=+..|-..+.++..+++..
T Consensus 49 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 120 (252)
T 4hxt_A 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 120 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 45556778888999999999999877665 35666766777888877888888999998777654
No 5
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=58.50 E-value=6.1 Score=29.68 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhCHhhhhc
Q psy12540 57 RNAANKILQSMCDLSPLLVKL 77 (79)
Q Consensus 57 ~~aA~~Il~~mr~hsp~LV~q 77 (79)
++-.+.++|+|++.||+||++
T Consensus 147 ~qEvq~Lld~l~~~~p~LveE 167 (333)
T 2x49_A 147 IQETKHMLDQLEAKFPDLLKE 167 (333)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHH
Confidence 455789999999999999997
No 6
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=58.25 E-value=9.1 Score=26.21 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHH-HhcCCCchhhHHHHHHHHHHhhhCchhhhhhh
Q psy12540 9 LCAFL-KRKRKSKLIGGPVQAYLSDIGKRHPQALVYPL 45 (79)
Q Consensus 9 ~~~ia-Ri~s~~~~vr~li~~LL~~IGk~HPQALvYPL 45 (79)
+.++. -+++++.-|++.|--.|.++||.||..++==|
T Consensus 161 ~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 161 KKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 44555 57888899999999999999999999865444
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=57.01 E-value=33 Score=21.43 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=45.0
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchh--------hhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQA--------LVYPLTVASKSNSSSRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQA--------LvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~L 74 (79)
++.-+.++++.++......|..+....|.. .+-+|.=..++++..=+..|-..+.++..+++.-
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (210)
T 4db6_A 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 344567778888888888888887665543 3445555567777766777788888888766653
No 8
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=54.76 E-value=46 Score=25.62 Aligned_cols=58 Identities=12% Similarity=-0.043 Sum_probs=39.6
Q ss_pred HhcCCCchhhHHHHHHHHHHhhhCchhhh---hhhhhcccCCCHHHHHHHHHHHHHHHhhC
Q psy12540 14 KRKRKSKLIGGPVQAYLSDIGKRHPQALV---YPLTVASKSNSSSRRNAANKILQSMCDLS 71 (79)
Q Consensus 14 Ri~s~~~~vr~li~~LL~~IGk~HPQALv---YPLtVA~KS~s~~R~~aA~~Il~~mr~hs 71 (79)
-+.++++.+|....+-|..++..||.++- --+..+.+++...=|..|..++-+|..+.
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 37888999999999999999999998652 13333445544433334555777776544
No 9
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=53.74 E-value=14 Score=27.32 Aligned_cols=56 Identities=4% Similarity=-0.016 Sum_probs=37.1
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhc---ccCCCHHHHHHHHHHHH
Q psy12540 10 CAFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVA---SKSNSSSRRNAANKILQ 65 (79)
Q Consensus 10 ~~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA---~KS~s~~R~~aA~~Il~ 65 (79)
.++-||-+=+....+.+..-+++.+|.||++.++.+.+. ...-+..-.+.-.+|++
T Consensus 95 l~LPkil~L~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik 153 (264)
T 2ilr_A 95 LFLGRILSLTSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVK 153 (264)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555554666788999999999999999877654433 34444455555555554
No 10
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=53.31 E-value=35 Score=22.60 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCc-hhhhhhhh--hcccCCCHHHHHHHHHHHHHHHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHP-QALVYPLT--VASKSNSSSRRNAANKILQSMCDL 70 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HP-QALvYPLt--VA~KS~s~~R~~aA~~Il~~mr~h 70 (79)
++..++.+++.+|......|..+|.... ..-+.|+. .+.++++..=|..|-..+.++...
T Consensus 59 L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~ 121 (280)
T 1oyz_A 59 AIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKK 121 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Confidence 3444556666666666666666663211 11122332 123444443444444555555543
No 11
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.57 E-value=46 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.027 Sum_probs=7.9
Q ss_pred hcCCCchhhHHHHHHHHHHh
Q psy12540 15 RKRKSKLIGGPVQAYLSDIG 34 (79)
Q Consensus 15 i~s~~~~vr~li~~LL~~IG 34 (79)
++.+++.||.....-|..+|
T Consensus 137 l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 137 AFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp TTCSCHHHHHHHHHHHHTC-
T ss_pred hhCCCHHHHHHHHHHHHhcC
Confidence 33444444444444444433
No 12
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III secretion, cytoplasmic FRAG protein transport; 2.40A {Helicobacter pylori}
Probab=51.85 E-value=9 Score=29.14 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhCHhhhhc
Q psy12540 57 RNAANKILQSMCDLSPLLVKL 77 (79)
Q Consensus 57 ~~aA~~Il~~mr~hsp~LV~q 77 (79)
++-.+.++|+|++.||.||++
T Consensus 174 ~qEvq~LLd~l~~~~p~LVeE 194 (365)
T 3myd_A 174 KDEVKSLLERLAKDYPTIVEE 194 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHhcC
Confidence 455688999999999999986
No 13
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=51.56 E-value=9.1 Score=29.42 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhCHhhhhcc
Q psy12540 57 RNAANKILQSMCDLSPLLVKLE 78 (79)
Q Consensus 57 ~~aA~~Il~~mr~hsp~LV~q~ 78 (79)
++-.+.+||+|++.||.||++.
T Consensus 197 ~QEvq~LLd~L~~~~P~LVeEl 218 (383)
T 4a5p_A 197 IQETKNMLDQFENRYPDLLXEV 218 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHH
Confidence 4557899999999999999973
No 14
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=50.56 E-value=10 Score=29.23 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhCHhhhhcc
Q psy12540 57 RNAANKILQSMCDLSPLLVKLE 78 (79)
Q Consensus 57 ~~aA~~Il~~mr~hsp~LV~q~ 78 (79)
++-.+.+||+|++.||.||++.
T Consensus 203 ~qEvq~LLd~L~~~~p~LVeEl 224 (389)
T 3a5i_A 203 RQEAQQLLDRVSQEMPKLTEDL 224 (389)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTT
T ss_pred HHHHHHHHHHHHHHChHHHHHh
Confidence 3556889999999999999984
No 15
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.37 E-value=47 Score=20.92 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=13.1
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGK 35 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk 35 (79)
++..++++++.+|......|..+|.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4444555555555555555555543
No 16
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=49.26 E-value=11 Score=28.82 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhCHhhhhcc
Q psy12540 58 NAANKILQSMCDLSPLLVKLE 78 (79)
Q Consensus 58 ~aA~~Il~~mr~hsp~LV~q~ 78 (79)
+-.+.+||+|++.||.||++.
T Consensus 193 qEvq~LLd~l~~~~P~LVeEl 213 (382)
T 3mix_A 193 QETKQLIDHLKESYPVLVEEV 213 (382)
T ss_dssp HHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHh
Confidence 445789999999999999974
No 17
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=49.26 E-value=11 Score=27.48 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHHHHh-cCCCchhhHHHHHHHHHHhhhCchhhhhh
Q psy12540 9 LCAFLKR-KRKSKLIGGPVQAYLSDIGKRHPQALVYP 44 (79)
Q Consensus 9 ~~~iaRi-~s~~~~vr~li~~LL~~IGk~HPQALvYP 44 (79)
+.++..+ +.++..||+.|-+-|.|++|.||....-=
T Consensus 180 l~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 180 IRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHH
Confidence 3344443 45678999999999999999999986543
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=47.92 E-value=66 Score=24.46 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhhhC-ch----hhhhhhhhcccCC-CHHHHHHHHHHHHHHHhhC
Q psy12540 10 CAFLKRKRKSKLIGGPVQAYLSDIGKRH-PQ----ALVYPLTVASKSN-SSSRRNAANKILQSMCDLS 71 (79)
Q Consensus 10 ~~iaRi~s~~~~vr~li~~LL~~IGk~H-PQ----ALvYPLtVA~KS~-s~~R~~aA~~Il~~mr~hs 71 (79)
.++..+..+++.+|..+.+.|..|++.. |. .++--|.=...|+ +..-+..|..++..+.+..
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 3455677888999999999999998874 63 4555555556666 6667778888888877643
No 19
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=47.69 E-value=8.7 Score=22.51 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhCchhh
Q psy12540 24 GPVQAYLSDIGKRHPQAL 41 (79)
Q Consensus 24 ~li~~LL~~IGk~HPQAL 41 (79)
+++..+|-.||+.+|+.+
T Consensus 25 ~~L~~lLqql~~~nP~l~ 42 (61)
T 2f4m_B 25 SLLPALLQQIGRENPQLL 42 (61)
T ss_dssp GGHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhHCHHHH
Confidence 456778888999999864
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=47.26 E-value=62 Score=22.38 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhhh-CchhhhhhhhhcccC--CCHHHHHHHHHHHHHH
Q psy12540 9 LCAFLKRKRKSKLIGGPVQAYLSDIGKR-HPQALVYPLTVASKS--NSSSRRNAANKILQSM 67 (79)
Q Consensus 9 ~~~iaRi~s~~~~vr~li~~LL~~IGk~-HPQALvYPLtVA~KS--~s~~R~~aA~~Il~~m 67 (79)
.+++....+|+..+|+--.+-|..+.+. +|....|=+.+...+ +...|+.+| .++.++
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~-~~Lk~~ 64 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAG-LQIKNS 64 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH-HHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHH-HHHHHh
Confidence 3667778899999999999999998875 788766555555444 334565555 455554
No 21
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=47.24 E-value=24 Score=24.24 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=36.4
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCHHHHHHHHHH
Q psy12540 12 FLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSSSRRNAANKI 63 (79)
Q Consensus 12 iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~~R~~aA~~I 63 (79)
-.-+++++.-|++.|--.|.++||.||..++==|. ..+=+...+++|.+.+
T Consensus 172 ~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~-~~~l~~~~~r~A~k~l 222 (232)
T 3jxy_A 172 GQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ-NNELAPLSKREAIKHI 222 (232)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH-HSCCCHHHHHHHTTTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH-HCCCCHHHHHHHHHhc
Confidence 35578889999999999999999999998654333 2233334566655443
No 22
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=43.97 E-value=26 Score=21.02 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCH-HHHHHHH
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSS-SRRNAAN 61 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~-~R~~aA~ 61 (79)
++..++.+++.||......|..+|. |. .+-+|.-+.++++. .|..++.
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~--~~-a~~~L~~~L~d~~~~VR~~A~~ 95 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQD--ER-AVEPLIKLLEDDSGFVRSGAAR 95 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCS--HH-HHHHHHHHHHHCCTHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCC--HH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 4455566677777777777666663 22 24444444444443 3444443
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=43.14 E-value=63 Score=20.64 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=46.3
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchh--------hhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQA--------LVYPLTVASKSNSSSRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQA--------LvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~L 74 (79)
++.-++++++.+++.....|..++...+.. .+-+|.=..++++..=+..|-..+.++..+++..
T Consensus 101 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 445567788889999999999998777654 3445555567777666777788888888776543
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=39.83 E-value=67 Score=19.96 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=45.5
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchh--------hhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQA--------LVYPLTVASKSNSSSRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQA--------LvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~L 74 (79)
++.-++++++.++.-....|..+....|.. .+-+|.=..++++..=+..|-..+.++..+++..
T Consensus 101 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 455578888889998888999888755543 3445555567777766777778888888776543
No 25
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.81 E-value=69 Score=20.11 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.2
Q ss_pred hcCCCchhhHHHHHHHHHHh
Q psy12540 15 RKRKSKLIGGPVQAYLSDIG 34 (79)
Q Consensus 15 i~s~~~~vr~li~~LL~~IG 34 (79)
++.+++.||......|..+|
T Consensus 90 l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444444
No 26
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=39.58 E-value=13 Score=22.52 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhCchhh
Q psy12540 24 GPVQAYLSDIGKRHPQAL 41 (79)
Q Consensus 24 ~li~~LL~~IGk~HPQAL 41 (79)
+++..+|-.||+.+||.+
T Consensus 27 ~lL~~lLqqL~~~NPqL~ 44 (72)
T 1pve_A 27 SLLPALLQQIGRENPQLL 44 (72)
T ss_dssp GGHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhHCHHHH
Confidence 457788888999998864
No 27
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=36.84 E-value=92 Score=22.29 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=35.9
Q ss_pred hcCCCchhhHHHHHHHHHHhhhCch-----hhhhhhhhcccCCCHHHHHHHHHHHHHHHhh
Q psy12540 15 RKRKSKLIGGPVQAYLSDIGKRHPQ-----ALVYPLTVASKSNSSSRRNAANKILQSMCDL 70 (79)
Q Consensus 15 i~s~~~~vr~li~~LL~~IGk~HPQ-----ALvYPLtVA~KS~s~~R~~aA~~Il~~mr~h 70 (79)
++.+++.||....+.|..+++..|. .++-.|.-..++++..=|+.|-..+..+.+.
T Consensus 173 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 4677888999999999998877664 2333344445566555555555555555543
No 28
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=36.24 E-value=46 Score=19.80 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=29.7
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCH-HHHHHHH
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSS-SRRNAAN 61 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~-~R~~aA~ 61 (79)
++.-++.+++.||.-...-|..+|. |.+ +-+|.=..++++. .|..++.
T Consensus 78 L~~~L~d~~~~VR~~A~~aL~~~~~--~~a-~~~L~~~l~d~~~~vr~~A~~ 126 (131)
T 1te4_A 78 LIKLLEDDSGFVRSGAARSLEQIGG--ERV-RAAMEKLAETGTGFARKVAVN 126 (131)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHCS--HHH-HHHHHHHTTSCCTHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--HHH-HHHHHHHHhCCCHHHHHHHHH
Confidence 3445567788899988888888883 333 4455444555444 4554443
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=35.39 E-value=92 Score=20.28 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhC-ch--------hhhhhhhhcccCCCHHHHHHHHHHHHHHH
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRH-PQ--------ALVYPLTVASKSNSSSRRNAANKILQSMC 68 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~H-PQ--------ALvYPLtVA~KS~s~~R~~aA~~Il~~mr 68 (79)
++..++.+++.+|.-..++|..+-..| |+ .++-.|.-....+...=|++|...+..+.
T Consensus 138 l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 138 IVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 456677888899999999999875555 54 23434444444444433344444444444
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=35.32 E-value=92 Score=20.27 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhhhCc-hhhhhhhhhcccCCCHHHHHHHHHHHHH-HHhhCHh
Q psy12540 7 VALCAFLKRKRKSKLIGGPVQAYLSDIGKRHP-QALVYPLTVASKSNSSSRRNAANKILQS-MCDLSPL 73 (79)
Q Consensus 7 ~~~~~iaRi~s~~~~vr~li~~LL~~IGk~HP-QALvYPLtVA~KS~s~~R~~aA~~Il~~-mr~hsp~ 73 (79)
+.-.++.++..+++.||+.....|..+....+ ..++=.|.-+.++.+..=|..+-..+.. +..+.|+
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 34467888999999999999999999988655 4444445555555555334445555555 5554443
No 31
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=34.80 E-value=93 Score=22.26 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=23.2
Q ss_pred CCCchhhHHHHHHHHHHhh-----hCchhhhhhhhhcccCCCHHHHHHHHHHHHHHHh
Q psy12540 17 RKSKLIGGPVQAYLSDIGK-----RHPQALVYPLTVASKSNSSSRRNAANKILQSMCD 69 (79)
Q Consensus 17 s~~~~vr~li~~LL~~IGk-----~HPQALvYPLtVA~KS~s~~R~~aA~~Il~~mr~ 69 (79)
.+++.+|+.+.+.|..+.. .|.+.++..|.-...+++..=|+.|...+.++..
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~ 116 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISH 116 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3445566555555554432 2344444444333333333333333344444433
No 32
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=34.45 E-value=94 Score=24.26 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=46.1
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhhhCc-h---hhhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhh
Q psy12540 12 FLKRKRKSKLIGGPVQAYLSDIGKRHP-Q---ALVYPLTVASKSNSSSRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 12 iaRi~s~~~~vr~li~~LL~~IGk~HP-Q---ALvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~L 74 (79)
+--+..+++.+|..+.+.+..|++.-+ + -++-.|.=...|++..-++.|..++.++.+..|..
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 334667888999999999999988642 1 24555555667777777888888888887776654
No 33
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=32.49 E-value=1.4e+02 Score=23.54 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=44.7
Q ss_pred HHHHH-hcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCH-HHHHHHHHHHHHHHhhCHh
Q psy12540 10 CAFLK-RKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSS-SRRNAANKILQSMCDLSPL 73 (79)
Q Consensus 10 ~~iaR-i~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~-~R~~aA~~Il~~mr~hsp~ 73 (79)
+++.- .+++++..|+-..+.|..+. .+|++.-|-+.+..+|.+. .|.-+|..+=++++.+...
T Consensus 28 ~~l~~l~~~~~~~~r~~A~~~L~~~~-~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 28 KALHQLYYDPNIENKNLAQKWLMQAQ-VSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHh
Confidence 34434 44678889999999999975 6899988888887776554 5776666666666655443
No 34
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=32.15 E-value=17 Score=21.14 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCHh
Q psy12540 50 KSNSSSRRNAANKILQSMCDLSPL 73 (79)
Q Consensus 50 KS~s~~R~~aA~~Il~~mr~hsp~ 73 (79)
+|.....+.||...+++|...+|.
T Consensus 52 ~SKK~Aeq~AA~~al~~L~~~~~~ 75 (75)
T 3p1x_A 52 SNKKVAKAYAALAALEKLFPDTPL 75 (75)
T ss_dssp SSHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHccCCC
Confidence 456668899999999999988773
No 35
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=31.54 E-value=16 Score=20.13 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhCchhhhhhh
Q psy12540 25 PVQAYLSDIGKRHPQALVYPL 45 (79)
Q Consensus 25 li~~LL~~IGk~HPQALvYPL 45 (79)
....+|++|-+-+|-+|.+|+
T Consensus 21 ~tAg~lIEiNRffPD~L~~p~ 41 (41)
T 1jb0_J 21 ITAGILIEFNRFYPDLLFHPL 41 (41)
T ss_dssp HHHHHHHHHHHHSCCCSSCCC
T ss_pred HHHHHHHHHHHhCcccccCCC
Confidence 356789999999999999984
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=31.33 E-value=1.2e+02 Score=20.52 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHhhhC--------chhhhhhhhhcccCCCHHHHHHHHHHHHHHHhhCH
Q psy12540 5 ALVALCAFLKRKRKSKLIGGPVQAYLSDIGKRH--------PQALVYPLTVASKSNSSSRRNAANKILQSMCDLSP 72 (79)
Q Consensus 5 ~~~~~~~iaRi~s~~~~vr~li~~LL~~IGk~H--------PQALvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp 72 (79)
..+.-.+|.|+..+.+.|++-....|..+-..- +..++=.|.-+.++.+..=|..+...+.+.-..++
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 344557899999999999999998888888754 56777788888888766444555555555554443
No 37
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=30.73 E-value=24 Score=24.41 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhCchhh
Q psy12540 24 GPVQAYLSDIGKRHPQAL 41 (79)
Q Consensus 24 ~li~~LL~~IGk~HPQAL 41 (79)
++|..+|-.||+.+||-+
T Consensus 47 qlL~~lLqqig~~NPqL~ 64 (171)
T 2qsf_X 47 EALAPLLENISARYPQLR 64 (171)
T ss_dssp GGHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHhhCHHHH
Confidence 467789999999999854
No 38
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=30.38 E-value=1.8e+02 Score=22.03 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=37.5
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchhhh-----hhhhhcccCCCHHHHHHHHHHHHHHHhhCH
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQALV-----YPLTVASKSNSSSRRNAANKILQSMCDLSP 72 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQALv-----YPLtVA~KS~s~~R~~aA~~Il~~mr~hsp 72 (79)
+..-+.++++.||+--..-|..+.+..|..+- -.|.-...+++..=+.+|-..+..+..++|
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 34445667777777777777777777777543 233333444454444555556666776665
No 39
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=29.91 E-value=63 Score=26.31 Aligned_cols=62 Identities=13% Similarity=0.000 Sum_probs=43.9
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCH-HHHHHHHHHHHHHHhhCH
Q psy12540 10 CAFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSS-SRRNAANKILQSMCDLSP 72 (79)
Q Consensus 10 ~~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~-~R~~aA~~Il~~mr~hsp 72 (79)
+++.-..+|+...|+-..+.|... +.+|++..+-+.+-.+|.+. .|.-+|..+-++++.+..
T Consensus 20 ~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~ 82 (1049)
T 3m1i_C 20 QVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 82 (1049)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCc
Confidence 455556677777899999999888 67899988877776666554 566666655556665443
No 40
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.48 E-value=1e+02 Score=19.07 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=11.0
Q ss_pred HhcCCCchhhHHHHHHHHHHh
Q psy12540 14 KRKRKSKLIGGPVQAYLSDIG 34 (79)
Q Consensus 14 Ri~s~~~~vr~li~~LL~~IG 34 (79)
.++.+++.+|......|..+|
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHhC
Confidence 344455555555555555554
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=29.37 E-value=51 Score=26.22 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=41.4
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCH-HHHHHHHHHHHHHHhhCHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSS-SRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~-~R~~aA~~Il~~mr~hsp~L 74 (79)
++.-..+|++..|+-..+.|... +.+|++.-|-+.+..+|.+. .|.-+|..+-++++.+...+
T Consensus 12 ~l~~~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 75 (971)
T 2x1g_F 12 AVVSFYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEV 75 (971)
T ss_dssp THHHHHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhC
Confidence 33335568888999999999886 46799999988888777665 57666666666666554443
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=29.05 E-value=1.9e+02 Score=22.09 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=38.0
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhh-CchhhhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhhhhc
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKR-HPQALVYPLTVASKSNSSSRRNAANKILQSMCDLSPLLVKL 77 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~-HPQALvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~LV~q 77 (79)
+.--+.++++.+|.+-...|..||.. -=+.++-++.=+.++++..=|++|-.-+-++-..+|+++++
T Consensus 112 l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~ 179 (618)
T 1w63_A 112 IKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEM 179 (618)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGG
T ss_pred HHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHH
Confidence 33445677777777777777777731 11223445544555555544444444455555577877654
No 43
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=28.94 E-value=73 Score=21.94 Aligned_cols=33 Identities=3% Similarity=0.017 Sum_probs=28.3
Q ss_pred HhcCCCchhhHHHHHHHHHHhhhCchhhhhhhh
Q psy12540 14 KRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLT 46 (79)
Q Consensus 14 Ri~s~~~~vr~li~~LL~~IGk~HPQALvYPLt 46 (79)
-+++++..|++-+--.|.++|+.+|...-=.+.
T Consensus 159 ~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~ 191 (235)
T 1t06_A 159 TIHHSPERTKSAMNNFLNTVAISYVPLHEKAVE 191 (235)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HccCChHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 788889999999999999999999987655554
No 44
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.92 E-value=59 Score=22.12 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhc
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVA 48 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA 48 (79)
+.-.|++.+...+..+.-|--+|....|+..+|.|++.
T Consensus 29 icd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Ll 66 (220)
T 1dvp_A 29 ICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVL 66 (220)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33444455556788888888888888999999998875
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=28.38 E-value=99 Score=23.46 Aligned_cols=57 Identities=14% Similarity=-0.016 Sum_probs=39.5
Q ss_pred HHHHHHh-cCCCchhhHHHHHHHHHHhhh-CchhhhhhhhhcccC--CCHHHHHHHHHHHHH
Q psy12540 9 LCAFLKR-KRKSKLIGGPVQAYLSDIGKR-HPQALVYPLTVASKS--NSSSRRNAANKILQS 66 (79)
Q Consensus 9 ~~~iaRi-~s~~~~vr~li~~LL~~IGk~-HPQALvYPLtVA~KS--~s~~R~~aA~~Il~~ 66 (79)
.+++... .+||..+|+--.+-|....+. +|....+=+.+...+ +...|+-+|. ++.+
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~-~lk~ 67 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL-TLKN 67 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHH-HHHT
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHH-HHHh
Confidence 3566667 889999999999999998775 688766666665554 3345665554 4443
No 46
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=28.30 E-value=1.3e+02 Score=22.82 Aligned_cols=59 Identities=22% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhhh-CchhhhhhhhhcccC-CCHHHHHHHHHHHHHH
Q psy12540 9 LCAFLKRKRKSKLIGGPVQAYLSDIGKR-HPQALVYPLTVASKS-NSSSRRNAANKILQSM 67 (79)
Q Consensus 9 ~~~iaRi~s~~~~vr~li~~LL~~IGk~-HPQALvYPLtVA~KS-~s~~R~~aA~~Il~~m 67 (79)
.+++.-+.+|+..+|+--.+.|.+..+. +|+.+.+=+.+...+ .....|+.|-.++.+.
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~ 64 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNS 64 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 3567778899999999999999998875 355544433333332 3455556666666653
No 47
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=27.00 E-value=1.6e+02 Score=20.33 Aligned_cols=63 Identities=16% Similarity=-0.011 Sum_probs=43.3
Q ss_pred HHHHhcCC-CchhhHHHHHHHHHHhhhCch--------hhhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHh
Q psy12540 11 AFLKRKRK-SKLIGGPVQAYLSDIGKRHPQ--------ALVYPLTVASKSNSSSRRNAANKILQSMCDLSPL 73 (79)
Q Consensus 11 ~iaRi~s~-~~~vr~li~~LL~~IGk~HPQ--------ALvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~ 73 (79)
++..+.++ ++.++......|..++...|. -.+-+|.-..++++..=+..|-..+.++...++.
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH
Confidence 34455666 678888888888888864432 2445555567777776677777888888877654
No 48
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=26.60 E-value=22 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.4
Q ss_pred HHhcCCCchhhHHHHHHHHHHhhh
Q psy12540 13 LKRKRKSKLIGGPVQAYLSDIGKR 36 (79)
Q Consensus 13 aRi~s~~~~vr~li~~LL~~IGk~ 36 (79)
++++..++.||++|.+.|..-|-.
T Consensus 10 ~lLdIts~Eir~IV~~~L~~~GA~ 33 (117)
T 2kx7_A 10 VMVDVTSAEIRNIVTRQLENWGAT 33 (117)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTEE
T ss_pred EEEEcCcHHHHHHHHHHHHhcCCe
Confidence 678899999999999999998854
No 49
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.71 E-value=2.1e+02 Score=20.93 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcccCCCHHHHHHHHHHHHHHHhhCH
Q psy12540 3 FSALVALCAFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVASKSNSSSRRNAANKILQSMCDLSP 72 (79)
Q Consensus 3 ~~~~~~~~~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp 72 (79)
=||+..+..|.+=.+-++.+.+.|++|+. +-.+.|+.|+..- +-|..|+++.-..++
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk----------~qAV~VCiek~~f---~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVK----------EAAVIICIKNKEF---EKASKILKKHMSKDP 145 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH----------HHHHHHHHHTTCH---HHHHHHHHHHSTTCG
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHH----------HHHHHHHHHhcch---HHHHHHHHHHhcCCC
Confidence 35666666666655545555566666554 3456788888755 238888888776654
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=23.59 E-value=96 Score=23.53 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=33.5
Q ss_pred HhcCCCchhhHHHHHHHHHHhhh-CchhhhhhhhhcccCCCH-HHHHHHHHHHHHHHhhCHhhhh
Q psy12540 14 KRKRKSKLIGGPVQAYLSDIGKR-HPQALVYPLTVASKSNSS-SRRNAANKILQSMCDLSPLLVK 76 (79)
Q Consensus 14 Ri~s~~~~vr~li~~LL~~IGk~-HPQALvYPLtVA~KS~s~-~R~~aA~~Il~~mr~hsp~LV~ 76 (79)
-+.++++.+|.+-..-|..||.. .-..++-++.=+.++++. .|++|+..+ .++-..+|++++
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al-~~i~~~~p~~~~ 157 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCV-AKLHDINAQMVE 157 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHH-HHHHHSSCCCHH
T ss_pred HcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHHHhhChhhcc
Confidence 35677777777776666655511 112233335445566555 455555544 445456666654
No 51
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=21.87 E-value=3.5e+02 Score=22.56 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=51.3
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhhhCchh---hhhhhhhcccCCCHHHHHHHHHHHHHHHhh---CHhhh
Q psy12540 12 FLKRKRKSKLIGGPVQAYLSDIGKRHPQA---LVYPLTVASKSNSSSRRNAANKILQSMCDL---SPLLV 75 (79)
Q Consensus 12 iaRi~s~~~~vr~li~~LL~~IGk~HPQA---LvYPLtVA~KS~s~~R~~aA~~Il~~mr~h---sp~LV 75 (79)
-...|..+..=-+.+.+.+.++.+..||. ++-|++---|-+ ..|+..+...|++|... |+++-
T Consensus 815 ~~~fh~~~g~gy~~~~~~~~~l~~~np~~a~r~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ls~~~~ 883 (891)
T 3b34_A 815 PAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYD-AKRQEKMRAALEQLKGLENLSGDLY 883 (891)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCTTCCHHHH
T ss_pred ccccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHHhhhhhcC-HHHHHHHHHHHHHHHhCcCCCccHH
Confidence 55688888888899999999999999996 677777666666 55999999999999765 55543
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=21.71 E-value=1.6e+02 Score=18.62 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=45.2
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchh--------hhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQA--------LVYPLTVASKSNSSSRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQA--------LvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~L 74 (79)
++.-++++++.++......|..+....|.. .+-+|.=..++++..=+..|-..+.++..+++..
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 445567788889999999999998755432 2345555566777766777888888888776653
No 53
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=21.55 E-value=2e+02 Score=19.73 Aligned_cols=64 Identities=9% Similarity=-0.049 Sum_probs=42.3
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhhCchh--------hhhhhhhcccCCCHHHHHHHHHHHHHHHhhCHhh
Q psy12540 11 AFLKRKRKSKLIGGPVQAYLSDIGKRHPQA--------LVYPLTVASKSNSSSRRNAANKILQSMCDLSPLL 74 (79)
Q Consensus 11 ~iaRi~s~~~~vr~li~~LL~~IGk~HPQA--------LvYPLtVA~KS~s~~R~~aA~~Il~~mr~hsp~L 74 (79)
++.-+..+++.++......|..++...|.. ++-+|.-..++++..=++.|-..+.++...++..
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~ 310 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ 310 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 344556778888888888888888765532 3334444456666666677777888887665543
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=21.37 E-value=2e+02 Score=19.68 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=35.8
Q ss_pred HHhcCCCchhhHHHHHHHHHHhhhCchh-------hhhhhhh-cccCCCHHHHHHHHHHHHHHHh
Q psy12540 13 LKRKRKSKLIGGPVQAYLSDIGKRHPQA-------LVYPLTV-ASKSNSSSRRNAANKILQSMCD 69 (79)
Q Consensus 13 aRi~s~~~~vr~li~~LL~~IGk~HPQA-------LvYPLtV-A~KS~s~~R~~aA~~Il~~mr~ 69 (79)
..+..+++.+|+.+.+.|..++..+|.. -+.|+.+ ..++....=+..|...+..+.+
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 3467788999999999999999888753 2334333 3445444333444444445443
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=20.98 E-value=2.8e+02 Score=21.59 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhhhCchhhhhhhhhcc--cCCC-HHHHHHHHHHHHHHHhhC
Q psy12540 9 LCAFLKRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLTVAS--KSNS-SSRRNAANKILQSMCDLS 71 (79)
Q Consensus 9 ~~~iaRi~s~~~~vr~li~~LL~~IGk~HPQALvYPLtVA~--KS~s-~~R~~aA~~Il~~mr~hs 71 (79)
.+++.-..+||..+|+--.+-|..+ +.+|....|=+.+.. .+.+ ..|+-+|..+=+.++.+.
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w 80 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcc
Confidence 4566777889999999999999987 568987666555544 4444 456666654444444443
Done!