RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12540
         (79 letters)



>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
           alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
           3zwq_A
          Length = 313

 Score = 28.0 bits (63), Expect = 0.27
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 39  QALVYPLTVASKSNSSSRRNAAN 61
           Q L+YP    + S + SR   + 
Sbjct: 181 QVLIYPAVNLTGSPTVSRVEYSG 203


>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle,
          cell division, DNA damage, DNA recombination, DNA
          repair, DNA replication; HET: AMP; 1.8A {Pyrococcus
          furiosus} PDB: 3rr5_A*
          Length = 561

 Score = 27.4 bits (61), Expect = 0.38
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 1  MLFSALVALCAFL----KRKRKSKLIGGPVQAYLSDIGKRHPQALVYPLT 46
          M +  L  L   L     +  K++L+      +L  +   H + + Y + 
Sbjct: 1  MRYLELAQLYQKLEKTTMKLIKTRLV----ADFLKKVPDDHLEFIPYLIL 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 0.91
 Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 39/100 (39%)

Query: 8   ALCAFLKRKRKSKLIGG--------------------PVQA-----YL--------SDIG 34
           +L       RK+K   G                    PV +      L         D+ 
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444

Query: 35  KR----HPQALVYPLTVASKSNSSSRRNAANKILQSMCDL 70
           K     + + +  P  V    + S  R  +  I + + D 
Sbjct: 445 KNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISERIVDC 482



 Score = 26.2 bits (57), Expect = 1.2
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 3   FSALVALCAFLKRKRKSKLIGGPVQAYLSDI-GKRHPQALVYPLTVASKSNSSSRRNAAN 61
              ++ L  ++   +      G +++YL    G  H Q LV  + +A   +  S   +  
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG--HSQGLVTAVAIAETDSWESFFVSVR 297

Query: 62  KILQSM-------------CDLSPLLVK 76
           K +  +               L P +++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILE 325


>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
           dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
           tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
          Length = 323

 Score = 24.9 bits (55), Expect = 2.9
 Identities = 6/21 (28%), Positives = 7/21 (33%)

Query: 39  QALVYPLTVASKSNSSSRRNA 59
           Q L+YP         S   N 
Sbjct: 193 QVLIYPAVSFDLITKSLYDNG 213


>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
           2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
          Length = 311

 Score = 24.5 bits (54), Expect = 3.6
 Identities = 5/21 (23%), Positives = 7/21 (33%)

Query: 39  QALVYPLTVASKSNSSSRRNA 59
           Q L+YP+        S     
Sbjct: 184 QILIYPVVNFVAPTPSLLEFG 204


>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
           hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
           {Uncultured archaeon}
          Length = 311

 Score = 24.1 bits (53), Expect = 6.3
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 39  QALVYPLTVASKSNSSSRR 57
           Q L+YP+   +   ++S  
Sbjct: 178 QVLIYPVVNMTGVPTASLV 196


>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
           bacterium} PDB: 3dnm_A
          Length = 322

 Score = 23.8 bits (52), Expect = 7.0
 Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 2/34 (5%)

Query: 29  YLSDIGKRHP--QALVYPLTVASKSNSSSRRNAA 60
              + G   P    ++ P    + S  S+   A 
Sbjct: 169 KAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLAD 202


>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
           c.69.1.2 PDB: 1lzk_A
          Length = 323

 Score = 23.8 bits (52), Expect = 9.0
 Identities = 4/21 (19%), Positives = 4/21 (19%)

Query: 39  QALVYPLTVASKSNSSSRRNA 59
           Q L  P         S     
Sbjct: 184 QFLEIPELDDRLETVSMTNFV 204


>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
           bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
           3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
          Length = 322

 Score = 23.4 bits (51), Expect = 9.8
 Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)

Query: 29  YLSDIGKRHP--QALVYPLTVASKSNSSSRRNAA 60
              D G   P     + P    + +N S +  A 
Sbjct: 169 SARDQGLPMPASAIPISPWADMTCTNDSFKTRAE 202


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0806    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,019,924
Number of extensions: 44276
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 14
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)