RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12540
         (79 letters)



>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A
          homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
          Length = 125

 Score = 22.7 bits (48), Expect = 5.3
 Identities = 4/53 (7%), Positives = 17/53 (32%)

Query: 27 QAYLSDIGKRHPQALVYPLTVASKSNSSSRRNAANKILQSMCDLSPLLVKLER 79
          +    ++     + ++       + N+   +   + +     DL   +  L +
Sbjct: 24 KKVKPEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76


>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
          [TaxId: 271]}
          Length = 180

 Score = 22.5 bits (47), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 25 PVQAYLSDIGK 35
          PV+ YL +IG+
Sbjct: 3  PVRQYLHEIGQ 13


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,740
Number of extensions: 7743
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 5
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)