BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12544
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|B Chain B, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|C Chain C, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|D Chain D, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
Length = 489
Score = 91.7 bits (226), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGKMVKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 378 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 434
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
DLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 390 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 435
>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|B Chain B, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|C Chain C, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|D Chain D, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 90.5 bits (223), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
DLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434
>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|E Chain E, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|F Chain F, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|G Chain G, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|H Chain H, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
Length = 488
Score = 90.5 bits (223), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
DLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434
>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|B Chain B, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|C Chain C, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|D Chain D, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 90.5 bits (223), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
DLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434
>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OOZ|B Chain B, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|A Chain A, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|B Chain B, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 475
Score = 90.5 bits (223), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 371 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 427
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
DLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 383 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 428
>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|B Chain B, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|C Chain C, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|D Chain D, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1OOY|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|1OOY|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|3K6M|A Chain A, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|D Chain D, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|C Chain C, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|B Chain B, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart
Length = 481
Score = 90.5 bits (223), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
DLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434
>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
Length = 481
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/57 (64%), Positives = 45/57 (78%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGK+VKG GGA DLV++ TKVVVT EH+ + HKI +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGXGGAXDLVSSAKTKVVVTXEHSAKGNAHKIXEKCTLPLTGKQCVNRIITE 433
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
DLV++ TKVVVT EH+ + HKI +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTXEHSAKGNAHKIXEKCTLPLTGKQCVNRIITEK 434
>pdb|3CDK|B Chain B, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
pdb|3CDK|D Chain D, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
Length = 219
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGKMVKGMGGAMDLV + ++VV MEH + G K+ CSLPLTG++ V +IT+
Sbjct: 122 PGKMVKGMGGAMDLVNG-AKRIVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRLITD 177
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
DLV + ++VV MEH + G K+ CSLPLTG++ V +IT+
Sbjct: 134 DLVNG-AKRIVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRLITD 177
>pdb|3RRL|B Chain B, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit
A And B From Helicobacter Pylori 26695
pdb|3RRL|D Chain D, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit
A And B From Helicobacter Pylori 26695
Length = 207
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
P K++KG GGA DLV + KV+V EH + G K+ ECSLPLTGK V +IT+
Sbjct: 115 PKKLIKGXGGAXDLVHG-AKKVIVIXEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 86 DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
DLV + KV+V EH + G K+ ECSLPLTGK V +IT+
Sbjct: 127 DLVHG-AKKVIVIXEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170
>pdb|1S9A|A Chain A, Crystal Structure Of 4-chlorocatechol 1,2-dioxygenase From
Rhodococcus Opacus 1cp
pdb|1S9A|B Chain B, Crystal Structure Of 4-chlorocatechol 1,2-dioxygenase From
Rhodococcus Opacus 1cp
pdb|3O32|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With
3,5-Dichlorocatechol
pdb|3O32|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With
3,5-Dichlorocatechol
pdb|3O5U|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Protocatechuate
pdb|3O5U|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Protocatechuate
pdb|3O6J|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Hydroxyquinol
pdb|3O6J|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Hydroxyquinol
pdb|3O6R|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Pyrogallol
pdb|3O6R|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Pyrogallol
Length = 257
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 16 DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKIL 54
+PG ++ G D P T V+ + H+T DG +
Sbjct: 99 EPGDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFF 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,244,567
Number of Sequences: 62578
Number of extensions: 149651
Number of successful extensions: 218
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 26
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)