BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12544
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D0K2|SCOT1_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Mus musculus GN=Oxct1 PE=1 SV=1
Length = 520
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 51/59 (86%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGKMVKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEKG
Sbjct: 416 PGKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKG 474
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
GKMVKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 417 GKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 473
>sp|B2GV06|SCOT1_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Rattus norvegicus GN=Oxct1 PE=1 SV=1
Length = 520
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 51/59 (86%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGKMVKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEKG
Sbjct: 416 PGKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKG 474
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
GKMVKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 417 GKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 473
>sp|P55809|SCOT1_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Homo sapiens GN=OXCT1 PE=1 SV=1
Length = 520
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 50/59 (84%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGKMVKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 416 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKA 474
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKR-F 133
GKMVKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK F
Sbjct: 417 GKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVF 476
Query: 134 D 134
D
Sbjct: 477 D 477
>sp|Q29551|SCOT1_PIG Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Sus scrofa GN=OXCT1 PE=1 SV=2
Length = 520
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 50/59 (84%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 416 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKA 474
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKR-F 133
GK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK F
Sbjct: 417 GKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVF 476
Query: 134 D 134
D
Sbjct: 477 D 477
>sp|Q5XIJ9|SCO2A_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial
OS=Rattus norvegicus GN=Oxct2a PE=1 SV=1
Length = 520
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGK VKGMGGAMDLV++ TKVVVTMEH T+ KIL +C++PLTGK CVDLIITEK
Sbjct: 414 PGKKVKGMGGAMDLVSSKKTKVVVTMEHCTKTKQPKILEKCTMPLTGKSCVDLIITEKA 472
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 47/57 (82%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
GK VKGMGGAMDLV++ TKVVVTMEH T+ KIL +C++PLTGK CVDLIITEK
Sbjct: 415 GKKVKGMGGAMDLVSSKKTKVVVTMEHCTKTKQPKILEKCTMPLTGKSCVDLIITEK 471
>sp|Q9ESL0|SCO2B_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial
OS=Mus musculus GN=Oxct2b PE=2 SV=1
Length = 520
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 49/59 (83%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGK VKGMGGAMDLV++ T+VVVTMEH T+ KIL +C++PLTGK+CVDLIITEK
Sbjct: 414 PGKKVKGMGGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEKA 472
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
GK VKGMGGAMDLV++ T+VVVTMEH T+ KIL +C++PLTGK+CVDLIITEK
Sbjct: 415 GKKVKGMGGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEK 471
>sp|Q9JJN4|SCO2A_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial
OS=Mus musculus GN=Oxct2a PE=2 SV=2
Length = 520
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 49/59 (83%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGK VKGMGGAMDLV++ T+VVVTMEH T+ KIL +C++PLTGK+CVDLIITEK
Sbjct: 414 PGKKVKGMGGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEKA 472
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
GK VKGMGGAMDLV++ T+VVVTMEH T+ KIL +C++PLTGK+CVDLIITEK
Sbjct: 415 GKKVKGMGGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEK 471
>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial
OS=Homo sapiens GN=OXCT2 PE=2 SV=2
Length = 517
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGK VKGMGGAMDLV++ T+VVVTM+H T+D KI+ +C++PLTGK+CVD IITEK
Sbjct: 413 PGKKVKGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEKA 471
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 48/57 (84%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
GK VKGMGGAMDLV++ T+VVVTM+H T+D KI+ +C++PLTGK+CVD IITEK
Sbjct: 414 GKKVKGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEK 470
>sp|B0RVK3|SCOB_XANCB Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Xanthomonas campestris pv. campestris (strain B100)
GN=lpsJ PE=3 SV=1
Length = 213
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGKMVKGMGGAMDLVA +VVV MEH +DG HKILP+C LPLTG VD IIT+
Sbjct: 119 PGKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITD 174
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GKMVKGMGGAMDLVA +VVV MEH +DG HKILP+C LPLTG VD IIT+
Sbjct: 120 GKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITD 174
>sp|P0C7I8|SCOB_XANCP Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=lpsJ PE=3 SV=1
Length = 213
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGKMVKGMGGAMDLVA +VVV MEH +DG HKILP+C LPLTG VD IIT+
Sbjct: 119 PGKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITD 174
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GKMVKGMGGAMDLVA +VVV MEH +DG HKILP+C LPLTG VD IIT+
Sbjct: 120 GKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITD 174
>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid coenzyme A transferase,
mitochondrial OS=Caenorhabditis elegans GN=C05C10.3 PE=3
SV=1
Length = 521
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGK+VKGMGGAMDLV+AP +V+V MEH +++G KIL C LPLTGK + IIT+
Sbjct: 414 PGKLVKGMGGAMDLVSAPGARVIVVMEHVSKNGEPKILEHCELPLTGKGVISRIITD 470
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 43/56 (76%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GK+VKGMGGAMDLV+AP +V+V MEH +++G KIL C LPLTGK + IIT+
Sbjct: 415 GKLVKGMGGAMDLVSAPGARVIVVMEHVSKNGEPKILEHCELPLTGKGVISRIITD 470
>sp|P63650|SCOB_MYCTU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Mycobacterium tuberculosis GN=scoB PE=3 SV=1
Length = 218
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 52/87 (59%), Gaps = 16/87 (18%)
Query: 2 FNILRGGN---------SADTTPD------PGKMVKGMGGAMDLVAAPSTKVVVTMEHNT 46
F I+RGG+ T D PGKMVKGMGGAMDLV + KV+V MEH
Sbjct: 92 FGIIRGGHLDVAVLGAMQVSVTGDLANWMIPGKMVKGMGGAMDLVHG-ARKVIVMMEHTA 150
Query: 47 RDGGHKILPECSLPLTGKQCVDLIITE 73
+DG KIL C+LPLTG CVD I+TE
Sbjct: 151 KDGSPKILERCTLPLTGVGCVDRIVTE 177
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 7/85 (8%)
Query: 49 GGH---KILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRD 105
GGH +L + +TG +I GKMVKGMGGAMDLV + KV+V MEH +D
Sbjct: 97 GGHLDVAVLGAMQVSVTGDLANWMI---PGKMVKGMGGAMDLVHG-ARKVIVMMEHTAKD 152
Query: 106 GGHKILPECSLPLTGKQCVDLIITE 130
G KIL C+LPLTG CVD I+TE
Sbjct: 153 GSPKILERCTLPLTGVGCVDRIVTE 177
>sp|P63651|SCOB_MYCBO Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=scoB PE=3 SV=1
Length = 218
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 52/87 (59%), Gaps = 16/87 (18%)
Query: 2 FNILRGGN---------SADTTPD------PGKMVKGMGGAMDLVAAPSTKVVVTMEHNT 46
F I+RGG+ T D PGKMVKGMGGAMDLV + KV+V MEH
Sbjct: 92 FGIIRGGHLDVAVLGAMQVSVTGDLANWMIPGKMVKGMGGAMDLVHG-ARKVIVMMEHTA 150
Query: 47 RDGGHKILPECSLPLTGKQCVDLIITE 73
+DG KIL C+LPLTG CVD I+TE
Sbjct: 151 KDGSPKILERCTLPLTGVGCVDRIVTE 177
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 7/85 (8%)
Query: 49 GGH---KILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRD 105
GGH +L + +TG +I GKMVKGMGGAMDLV + KV+V MEH +D
Sbjct: 97 GGHLDVAVLGAMQVSVTGDLANWMI---PGKMVKGMGGAMDLVHG-ARKVIVMMEHTAKD 152
Query: 106 GGHKILPECSLPLTGKQCVDLIITE 130
G KIL C+LPLTG CVD I+TE
Sbjct: 153 GSPKILERCTLPLTGVGCVDRIVTE 177
>sp|Q54JD9|SCOT_DICDI Probable succinyl-CoA:3-ketoacid coenzyme A transferase,
mitochondrial OS=Dictyostelium discoideum GN=oxct1 PE=3
SV=1
Length = 509
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PG MVKG GGAMDL ++ S +VVV MEH T+ G KIL C+LPLTGK CV+ IITE
Sbjct: 407 PGSMVKGPGGAMDLTSSGS-RVVVIMEHTTKHGKPKILKNCTLPLTGKSCVNRIITE 462
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
G MVKG GGAMDL ++ S +VVV MEH T+ G KIL C+LPLTGK CV+ IITE
Sbjct: 408 GSMVKGPGGAMDLTSSGS-RVVVIMEHTTKHGKPKILKNCTLPLTGKSCVNRIITE 462
>sp|P76459|ATOA_ECOLI Acetate CoA-transferase subunit beta OS=Escherichia coli (strain
K12) GN=atoA PE=1 SV=1
Length = 216
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGKMV GMGGAMDLV S KV++ MEH +DG KIL C++PLT + V +++TE
Sbjct: 115 PGKMVPGMGGAMDLVTG-SRKVIIAMEHCAKDGSAKILRRCTMPLTAQHAVHMLVTE 170
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GKMV GMGGAMDLV S KV++ MEH +DG KIL C++PLT + V +++TE
Sbjct: 116 GKMVPGMGGAMDLVTG-SRKVIIAMEHCAKDGSAKILRRCTMPLTAQHAVHMLVTE 170
>sp|O34466|YODR_BACSU Probable coenzyme A transferase subunit beta OS=Bacillus subtilis
(strain 168) GN=yodR PE=3 SV=1
Length = 217
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGK V GMGGAM+L A + KVVV M H + G K+ C+LPLT CVDLIITEK
Sbjct: 122 PGKKVPGMGGAMEL-AQKAKKVVVVMSHTDQKGRPKLTERCTLPLTAAGCVDLIITEKA 179
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
GK V GMGGAM+L A + KVVV M H + G K+ C+LPLT CVDLIITEK
Sbjct: 123 GKKVPGMGGAMEL-AQKAKKVVVVMSHTDQKGRPKLTERCTLPLTAAGCVDLIITEK 178
>sp|P44874|ATOA_HAEIN Acetate CoA-transferase subunit beta OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=atoA PE=3
SV=1
Length = 223
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGKMV GMGGAMDLV + KV++ MEH + G KIL +C+LPLT + V +++TE
Sbjct: 117 PGKMVPGMGGAMDLVTG-AKKVIIGMEHCAKSGSSKILKKCTLPLTASKKVAMVVTE 172
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GKMV GMGGAMDLV + KV++ MEH + G KIL +C+LPLT + V +++TE
Sbjct: 118 GKMVPGMGGAMDLVTG-AKKVIIGMEHCAKSGSSKILKKCTLPLTASKKVAMVVTE 172
>sp|P42316|SCOB_BACSU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Bacillus subtilis (strain 168) GN=scoB PE=1 SV=1
Length = 216
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
PGKMVKGMGGAMDLV + ++VV MEH + G K+ CSLPLTG++ V +IT+
Sbjct: 119 PGKMVKGMGGAMDLVNG-AKRIVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRLITD 174
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GKMVKGMGGAMDLV + ++VV MEH + G K+ CSLPLTG++ V +IT+
Sbjct: 120 GKMVKGMGGAMDLVNG-AKRIVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRLITD 174
>sp|P23673|CTFB_CLOAB Butyrate--acetoacetate CoA-transferase subunit B OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ctfB PE=1 SV=1
Length = 221
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
PGKM+ GMGGAMDLV + KV++ M H T G KIL +C+LPLT K +LI+TE G
Sbjct: 123 PGKMLSGMGGAMDLVNG-AKKVIIAMRH-TNKGQPKILKKCTLPLTAKSQANLIVTELG 179
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GKM+ GMGGAMDLV + KV++ M H T G KIL +C+LPLT K +LI+TE
Sbjct: 124 GKMLSGMGGAMDLVNG-AKKVIIAMRH-TNKGQPKILKKCTLPLTAKSQANLIVTE 177
>sp|P56007|SCOB_HELPY Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=scoB PE=1 SV=1
Length = 207
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
P K++KGMGGAMDLV + KV+V MEH + G K+ ECSLPLTGK V +IT+
Sbjct: 115 PKKLIKGMGGAMDLVHG-AKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 76 KMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
K++KGMGGAMDLV + KV+V MEH + G K+ ECSLPLTGK V +IT+
Sbjct: 117 KLIKGMGGAMDLVHG-AKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170
>sp|Q9ZLE4|SCOB_HELPJ Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Helicobacter pylori (strain J99) GN=scoB PE=3 SV=1
Length = 207
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
P K++KGMGGAMDLV + KV+V MEH + G K+ ECSLPLTGK V +IT+
Sbjct: 115 PKKLIKGMGGAMDLVHG-AKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 76 KMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
K++KGMGGAMDLV + KV+V MEH + G K+ ECSLPLTGK V +IT+
Sbjct: 117 KLIKGMGGAMDLVHG-AKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170
>sp|P0A102|PCAJ_PSEPU 3-oxoadipate CoA-transferase subunit B OS=Pseudomonas putida
GN=pcaJ PE=1 SV=2
Length = 213
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 FNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPL 61
F + G+ A+ + +GGAMDL A + +V V M+H T+ G K++PEC+ PL
Sbjct: 108 FQVSVKGDLANWHTGAEGSIPAVGGAMDL-ATGARQVFVMMDHLTKTGESKLVPECTYPL 166
Query: 62 TGKQCVDLIITE 73
TG CV I T+
Sbjct: 167 TGIACVSRIYTD 178
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 78 VKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
+ +GGAMDL A + +V V M+H T+ G K++PEC+ PLTG CV I T+
Sbjct: 127 IPAVGGAMDL-ATGARQVFVMMDHLTKTGESKLVPECTYPLTGIACVSRIYTD 178
>sp|P0A101|PCAJ_PSEPK 3-oxoadipate CoA-transferase subunit B OS=Pseudomonas putida
(strain KT2440) GN=pcaJ PE=3 SV=2
Length = 213
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 FNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPL 61
F + G+ A+ + +GGAMDL A + +V V M+H T+ G K++PEC+ PL
Sbjct: 108 FQVSVKGDLANWHTGAEGSIPAVGGAMDL-ATGARQVFVMMDHLTKTGESKLVPECTYPL 166
Query: 62 TGKQCVDLIITE 73
TG CV I T+
Sbjct: 167 TGIACVSRIYTD 178
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 78 VKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
+ +GGAMDL A + +V V M+H T+ G K++PEC+ PLTG CV I T+
Sbjct: 127 IPAVGGAMDL-ATGARQVFVMMDHLTKTGESKLVPECTYPLTGIACVSRIYTD 178
>sp|Q59091|PCAJ_ACIAD 3-oxoadipate CoA-transferase subunit B OS=Acinetobacter sp. (strain
ADP1) GN=pcaJ PE=1 SV=2
Length = 217
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 FNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPL 61
F I G+ A+ + +GGAMDL A + KV VT +H T+ G KI+ E + P
Sbjct: 108 FQIAANGDLANWHTGAPDAIPSVGGAMDL-AVGAKKVFVTTDHVTKKGEPKIVAELTYPA 166
Query: 62 TGKQCVDLIITE 73
TG++CVD I T+
Sbjct: 167 TGQKCVDRIYTD 178
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 78 VKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
+ +GGAMDL A + KV VT +H T+ G KI+ E + P TG++CVD I T+
Sbjct: 127 IPSVGGAMDL-AVGAKKVFVTTDHVTKKGEPKIVAELTYPATGQKCVDRIYTD 178
>sp|Q67SV5|METN_SYMTH Methionine import ATP-binding protein MetN OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=metN PE=3 SV=1
Length = 332
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 35 STKVVVTM--EHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPS 92
+T+ V+ + E N R G +L + + + C + I E+GK+V+ GG ++L+ P
Sbjct: 175 TTRSVLALLREINRRLGLTILLITHQMEVVKQVCDSVAILEEGKVVE-QGGVLELIGRPG 233
Query: 93 TKVVVTMEHNTRDGGHKILPE 113
+++ +T + H+I P+
Sbjct: 234 SRLRELFYESTEEAAHRIHPD 254
>sp|A1SMQ5|SUCC_NOCSJ Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nocardioides sp.
(strain BAA-499 / JS614) GN=sucC PE=3 SV=1
Length = 386
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 71 ITEKGKMVKGMGGAMDLVAAPSTK-VVVTMEHNTRDGGHKILPECSLPLT 119
IT ++ G+ GA+D++ +TK +V+ ++ N D G +IL E + PL
Sbjct: 318 ITACDEVANGIVGALDILGEDATKPLVIRLDGNNADEGRRILTEAAHPLV 367
>sp|Q98HD3|FLGH_RHILO Flagellar L-ring protein OS=Rhizobium loti (strain MAFF303099)
GN=flgH PE=3 SV=1
Length = 235
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 44/117 (37%)
Query: 12 DTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLII 71
D GK + A D A K T+E N +LP +L +TG Q V +
Sbjct: 117 DKWSTAGKGAGALNSATDTTADGEIKRSETLELNVAAIVTDVLPNGNLMITGSQEVRVNA 176
Query: 72 TEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLII 128
+ + G+ D+ A + E GG + E P G+Q +D ++
Sbjct: 177 ELRVLTIAGIVRPADIGAENTIPYERIAEARISYGGRGRISEIQQPAYGQQVLDQVL 233
>sp|A9WWW7|PROA_BRUSI Gamma-glutamyl phosphate reductase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=proA PE=3 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 51 HKILPECSLPLTGKQCVDLIITEK---GKMVKGMGGAMDLVAAPSTKVVV 97
HK L +LP Q V +T++ G+M+KG+GGA+D++ K +V
Sbjct: 169 HKALEAANLPADAIQIVP--VTDRAAVGEMLKGLGGAIDVIVPRGGKSLV 216
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 LVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVD 68
LV+A +T VV T + N+R LP+ +P K+CV+
Sbjct: 411 LVSAKTTVVVTTQKRNSRRQLPSFLPQYPIPDRLKKCVE 449
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 87 LVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVD 125
LV+A +T VV T + N+R LP+ +P K+CV+
Sbjct: 411 LVSAKTTVVVTTQKRNSRRQLPSFLPQYPIPDRLKKCVE 449
>sp|P84857|LEAF_CYNDA Leaf protein OS=Cynodon dactylon PE=1 SV=1
Length = 271
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 4 ILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTME----HNTRDGGHK 52
IL GG S DT PDP K +KG + ++ P + E R GG K
Sbjct: 156 ILDGGPSRDTVPDPPKPLKGPFEWLKMIFDPRQRRFTAEEIVSRLAQRSGGRK 208
>sp|Q7M269|PHEG1_GASCO R-phycoerythrin gamma-1 chain, chloroplastic (Fragments)
OS=Gastroclonium coulteri PE=1 SV=2
Length = 71
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 82 GGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDRGNC 138
G A+D APS GH L C P +C + + + F++G C
Sbjct: 5 GAALDFPVAPSL------------AGHYSLTNCGQPSGASKCAEGTVPQAAFEKGTC 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,285,026
Number of Sequences: 539616
Number of extensions: 2531020
Number of successful extensions: 5455
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5370
Number of HSP's gapped (non-prelim): 75
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)