Query psy12544
Match_columns 140
No_of_seqs 238 out of 1112
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 22:01:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3822|consensus 100.0 6.5E-35 1.4E-39 254.9 4.2 92 1-92 381-488 (516)
2 COG2057 AtoA Acyl CoA:acetate/ 100.0 9.1E-34 2E-38 232.6 5.1 90 2-92 92-197 (225)
3 KOG3822|consensus 99.9 4.3E-24 9.2E-29 187.2 2.3 68 65-134 405-472 (516)
4 COG2057 AtoA Acyl CoA:acetate/ 99.8 1.7E-21 3.7E-26 160.3 5.0 68 65-135 115-182 (225)
5 TIGR02428 pcaJ_scoB_fam 3-oxoa 99.8 3E-19 6.5E-24 143.3 7.0 90 1-92 86-191 (207)
6 TIGR02428 pcaJ_scoB_fam 3-oxoa 99.2 1.7E-11 3.7E-16 98.6 4.8 64 68-134 113-176 (207)
7 PF13336 AcetylCoA_hyd_C: Acet 97.6 1.2E-05 2.6E-10 63.4 -0.4 71 8-79 48-126 (154)
8 TIGR03458 YgfH_subfam succinat 96.6 0.00078 1.7E-08 61.0 0.9 63 16-79 364-427 (485)
9 PF13336 AcetylCoA_hyd_C: Acet 95.9 0.0044 9.5E-08 49.0 1.9 74 58-134 43-124 (154)
10 COG4670 Acyl CoA:acetate/3-ket 94.5 0.049 1.1E-06 50.3 4.2 96 8-118 377-496 (527)
11 TIGR01110 mdcA malonate decarb 94.3 0.046 9.9E-07 50.8 3.8 60 19-78 362-459 (543)
12 TIGR03458 YgfH_subfam succinat 94.2 0.021 4.6E-07 51.8 1.4 74 58-134 351-425 (485)
13 TIGR01584 citF citrate lyase, 93.9 0.031 6.7E-07 51.3 1.8 68 16-89 367-436 (492)
14 KOG2828|consensus 92.1 0.085 1.8E-06 47.8 1.8 69 8-77 336-413 (454)
15 PF01144 CoA_trans: Coenzyme A 90.2 0.42 9.2E-06 37.6 3.9 66 14-79 125-193 (217)
16 COG0427 ACH1 Acetyl-CoA hydrol 89.6 0.33 7.1E-06 44.9 3.2 69 8-78 366-436 (501)
17 TIGR01110 mdcA malonate decarb 85.1 0.93 2E-05 42.4 3.5 72 58-134 349-458 (543)
18 TIGR01584 citF citrate lyase, 80.6 1.4 3E-05 40.8 2.7 77 53-134 349-426 (492)
19 PF01144 CoA_trans: Coenzyme A 73.5 4.8 0.0001 31.6 3.7 59 77-135 132-192 (217)
20 KOG2828|consensus 68.1 2.6 5.6E-05 38.5 1.2 72 59-133 332-412 (454)
21 COG0427 ACH1 Acetyl-CoA hydrol 45.7 16 0.00034 34.1 2.3 56 77-133 378-434 (501)
22 COG3044 Predicted ATPase of th 36.0 15 0.00033 34.4 0.6 33 20-53 386-418 (554)
23 COG5270 PUA domain (predicted 31.1 21 0.00045 29.8 0.6 16 52-67 15-30 (202)
24 PF13996 YobH: YobH-like prote 30.2 21 0.00046 25.2 0.5 27 112-139 37-66 (70)
25 PRK10906 DNA-binding transcrip 21.6 79 0.0017 26.0 2.4 35 93-133 200-234 (252)
26 PF01148 CTP_transf_1: Cytidyl 20.8 41 0.0009 26.2 0.6 16 17-32 228-243 (259)
No 1
>KOG3822|consensus
Probab=100.00 E-value=6.5e-35 Score=254.88 Aligned_cols=92 Identities=51% Similarity=0.787 Sum_probs=87.8
Q ss_pred CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544 1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ 65 (140)
Q Consensus 1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~ 65 (140)
-|+||||||+|.+ ||||||+|+|||||||||+.++.||||+|||++|||+|||+++|+|||||++
T Consensus 381 SFAMIRGgHvdlT~LGAmqvS~~GDLANWMIPGKlVKGMGGAMDLVss~~trVvvtMeH~ak~~~pKIme~C~lPLTGK~ 460 (516)
T KOG3822|consen 381 SFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSPKTRVVVTMEHCAKDNTPKIMEKCTLPLTGKG 460 (516)
T ss_pred ccceeccCcceeEeeeeeehhhccchhhhcccchhhccccccchhhhCCCceEEEEEeecccCCCchhhhhccccccCcc
Confidence 3999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544 66 CVDLIITEKGKMVKGMGGAMDLVA-APS 92 (140)
Q Consensus 66 ~VNwIVTg~aVfVkG~GGaMdLve-apg 92 (140)
|+|+||||+|||++....+++|.| ..+
T Consensus 461 ~v~rIItekAVFdV~~k~gLTLiE~~eg 488 (516)
T KOG3822|consen 461 CVDRIITEKAVFDVDKKKGLTLIELWEG 488 (516)
T ss_pred hHhhhhhhheeEEeecCCCcEEeeeccC
Confidence 999999999999998888899999 555
No 2
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=100.00 E-value=9.1e-34 Score=232.64 Aligned_cols=90 Identities=51% Similarity=0.832 Sum_probs=85.7
Q ss_pred eeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccce
Q psy12544 2 FNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQC 66 (140)
Q Consensus 2 f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~ 66 (140)
|+||||||+|.+ |+||||++|||||||||++|+ |||||+|+|++|+|.+|++++|+||||+.+|
T Consensus 92 f~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~ga-kkvii~m~H~~k~g~~ki~~~ctlplt~~~~ 170 (225)
T COG2057 92 FAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGA-KKVIVVMEHTKKSGVGKILKECTLPLTGNGC 170 (225)
T ss_pred HHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCC-cEEEEEeeeecccCCCcccCcccccccCCCC
Confidence 899999999985 999999999999999999999 9999999999999999999999999999999
Q ss_pred eeeEecCCCceeecCCCceEEEe-cCC
Q psy12544 67 VDLIITEKGKMVKGMGGAMDLVA-APS 92 (140)
Q Consensus 67 VNwIVTg~aVfVkG~GGaMdLve-apg 92 (140)
|++||||+|||++..++.|.|+| +|+
T Consensus 171 v~~iiTdl~V~~~~~~~~~~l~el~pg 197 (225)
T COG2057 171 VDRVITDLAVFEFDPGGELTLVELAPG 197 (225)
T ss_pred ceEEEeccEEEEecCCCeEEEEEeCCC
Confidence 99999999999987554699999 887
No 3
>KOG3822|consensus
Probab=99.88 E-value=4.3e-24 Score=187.21 Aligned_cols=68 Identities=59% Similarity=0.924 Sum_probs=65.2
Q ss_pred ceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEe
Q psy12544 65 QCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFD 134 (140)
Q Consensus 65 ~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~ 134 (140)
.-+||+|++ ++++||||+|||+++|+.||+|+|||++|||+|||+++|+|||||++||||||||+||+
T Consensus 405 DLANWMIPG--KlVKGMGGAMDLVss~~trVvvtMeH~ak~~~pKIme~C~lPLTGK~~v~rIItekAVF 472 (516)
T KOG3822|consen 405 DLANWMIPG--KLVKGMGGAMDLVSSPKTRVVVTMEHCAKDNTPKIMEKCTLPLTGKGCVDRIITEKAVF 472 (516)
T ss_pred chhhhcccc--hhhccccccchhhhCCCceEEEEEeecccCCCchhhhhccccccCcchHhhhhhhheeE
Confidence 358999998 68999999999999999999999999999999999999999999999999999999987
No 4
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=99.84 E-value=1.7e-21 Score=160.31 Aligned_cols=68 Identities=51% Similarity=0.827 Sum_probs=64.6
Q ss_pred ceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544 65 QCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR 135 (140)
Q Consensus 65 ~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~ 135 (140)
.-+||+|++ +.+||+||+|||+.+++ ||||+|+|++|+|.+|++++|+|||||.+||++|||||||+.
T Consensus 115 nlanw~Ipg--k~vpGmGGAmdl~~gak-kvii~m~H~~k~g~~ki~~~ctlplt~~~~v~~iiTdl~V~~ 182 (225)
T COG2057 115 NLANWMIPG--KMVPGMGGAMDLVTGAK-KVIVVMEHTKKSGVGKILKECTLPLTGNGCVDRVITDLAVFE 182 (225)
T ss_pred ceeeeeECC--ccccCCccchhhhcCCc-EEEEEeeeecccCCCcccCcccccccCCCCceEEEeccEEEE
Confidence 568999999 78999999999999886 999999999999999999999999999999999999999873
No 5
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=99.78 E-value=3e-19 Score=143.31 Aligned_cols=90 Identities=51% Similarity=0.811 Sum_probs=82.7
Q ss_pred CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544 1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ 65 (140)
Q Consensus 1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~ 65 (140)
+|.++++|++|.. |.+|++.+||.||++|++.+| +|+|++|.|++|+|++||+++|++|+|+++
T Consensus 86 ~f~~~~~G~~dv~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d~~~~a-~~~i~~~~~t~~~g~~~iv~~~~~~~t~~~ 164 (207)
T TIGR02428 86 SFAMIRGGHVDVAVLGALQVSENGDLANWMIPGKLVPGMGGAMDLVAGA-KRVIVAMEHTTKDGESKILKECTLPLTGAG 164 (207)
T ss_pred heeeEcCCceeEEEechHHhCCCCcccccccCCccccccCchhhhhcCC-CEEEEEEeeECCCCceEEcccCCCccCCCC
Confidence 4778888887764 899999999999999999999 999999999999999999999999999999
Q ss_pred eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544 66 CVDLIITEKGKMVKGMGGAMDLVA-APS 92 (140)
Q Consensus 66 ~VNwIVTg~aVfVkG~GGaMdLve-apg 92 (140)
+++++|||+|+|..... +|.|.| +|+
T Consensus 165 ~v~~vVTe~gV~~l~~~-~l~L~~~~pg 191 (207)
T TIGR02428 165 CVDRIVTELAVFEVTDG-GLILRELAPG 191 (207)
T ss_pred cccEEECCCEEEEEeCC-cEEEEEECCC
Confidence 99999999999987544 799999 887
No 6
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=99.19 E-value=1.7e-11 Score=98.57 Aligned_cols=64 Identities=58% Similarity=0.934 Sum_probs=58.2
Q ss_pred eeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEe
Q psy12544 68 DLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFD 134 (140)
Q Consensus 68 NwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~ 134 (140)
+|..+. +..+|.||++|++.+++ ++|++|.|++|+|++||+++|++|+|+++++++||||+||+
T Consensus 113 ~~~~~~--~~~~G~GG~~d~~~~a~-~~i~~~~~t~~~g~~~iv~~~~~~~t~~~~v~~vVTe~gV~ 176 (207)
T TIGR02428 113 NWMIPG--KLVPGMGGAMDLVAGAK-RVIVAMEHTTKDGESKILKECTLPLTGAGCVDRIVTELAVF 176 (207)
T ss_pred ccccCC--ccccccCchhhhhcCCC-EEEEEEeeECCCCceEEcccCCCccCCCCcccEEECCCEEE
Confidence 465554 55789999999999886 99999999999999999999999999999999999999986
No 7
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=97.59 E-value=1.2e-05 Score=63.43 Aligned_cols=71 Identities=27% Similarity=0.468 Sum_probs=52.5
Q ss_pred CCcccccccCCCccccccccceeeecCC----CeEEEEeeecCCCCC-ccccccCC---CcccccceeeeEecCCCceee
Q psy12544 8 GNSADTTPDPGKMVKGMGGAMDLVAAPS----TKVVVTMEHNTRDGG-HKILPECS---LPLTGKQCVDLIITEKGKMVK 79 (140)
Q Consensus 8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~----~~viv~m~H~~k~G~-pKi~~~ct---lPlTg~~~VNwIVTg~aVfVk 79 (140)
|++.-. .+.++.+-|+||..|.+.||. -|=|++|.-+.|+|+ ||||...+ -=-|.+..+++++||.|+.+.
T Consensus 48 Gqv~se-~ig~~~~sG~GGq~DF~~gA~~s~gG~sIial~St~~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVTEyGvA~L 126 (154)
T PF13336_consen 48 GQVNSE-SIGGRQVSGIGGQLDFVRGAYLSKGGKSIIALPSTAKDGTISRIVPRLPPGAPVTTPRHDVDYVVTEYGVADL 126 (154)
T ss_dssp S-EESS-EETTEESSGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSESB-TTT-SEEEETTEEEE-
T ss_pred cceeec-ccCCceEecCccHHHHHHHHHhCCCCceEEEEecccCCCCccceeeeecCCCCcccCcccCCEEEcCCEEEEe
Confidence 344444 578899999999999999872 248999999999999 99999998 335677899999999887754
No 8
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=96.56 E-value=0.00078 Score=60.97 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=53.7
Q ss_pred cCCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceee
Q psy12544 16 DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVK 79 (140)
Q Consensus 16 ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVk 79 (140)
+.++.+-|+||..|.+.|| ..=|+++.=++|+|+ ||||..++-.-|-+.-|++||||.|+...
T Consensus 364 ~g~~~~sG~GGq~DF~rgA-~~Siial~st~~~g~~S~Ivp~l~~vt~~r~dv~~vVTE~G~A~L 427 (485)
T TIGR03458 364 MGTKMMNGIGGSGDFARNA-YLSIFMTPSIAKGGKISSIVPMVSHVDHTEHDVMVIVTEQGLADL 427 (485)
T ss_pred cCceEEecCccHHHHHHHH-hhhhEEeeeecCCCceeeEeecCCCcCCchhhCCEEEecCEEEEe
Confidence 5778899999999999999 455677766888887 99999998667788999999999887754
No 9
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=95.92 E-value=0.0044 Score=49.02 Aligned_cols=74 Identities=28% Similarity=0.545 Sum_probs=53.9
Q ss_pred CCcccccceeeeEecCCCceeecCCCceEEEe----cCCCcEEEEEeecCCCCC-CccccCCC--CCcc-ccccccEEee
Q psy12544 58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVA----APSTKVVVTMEHNTRDGG-HKILPECS--LPLT-GKQCVDLIIT 129 (140)
Q Consensus 58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLve----apg~~ViV~m~H~~k~G~-pKi~~~Ct--lPlT-g~~~V~~iiT 129 (140)
..-|||.-+++-+ .. .+.-|+||.+|.+. +++-|=|++|.=+.++|+ ||||...+ =|.| .+.-||.|+|
T Consensus 43 evDL~Gqv~se~i-g~--~~~sG~GGq~DF~~gA~~s~gG~sIial~St~~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVT 119 (154)
T PF13336_consen 43 EVDLTGQVNSESI-GG--RQVSGIGGQLDFVRGAYLSKGGKSIIALPSTAKDGTISRIVPRLPPGAPVTTPRHDVDYVVT 119 (154)
T ss_dssp EEETTS-EESSEE-TT--EESSGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSESB-TTT-SEEEE
T ss_pred EEecCcceeeccc-CC--ceEecCccHHHHHHHHHhCCCCceEEEEecccCCCCccceeeeecCCCCcccCcccCCEEEc
Confidence 4568998888888 33 56678899999887 333478889999999999 99999998 4554 5889999999
Q ss_pred cceEe
Q psy12544 130 EKRFD 134 (140)
Q Consensus 130 dlav~ 134 (140)
|.++-
T Consensus 120 EyGvA 124 (154)
T PF13336_consen 120 EYGVA 124 (154)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 99864
No 10
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=94.47 E-value=0.049 Score=50.32 Aligned_cols=96 Identities=24% Similarity=0.325 Sum_probs=63.1
Q ss_pred CCcccccccCCCccccccccceeeecCCCeEEEEeeecC-------CCCCccccccCC----------------Cccccc
Q psy12544 8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNT-------RDGGHKILPECS----------------LPLTGK 64 (140)
Q Consensus 8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~-------k~G~pKi~~~ct----------------lPlTg~ 64 (140)
||+... ..|+..+.|-||=.|..++| ++||..=+-|+ .||+-.|.++=+ +-+.-.
T Consensus 377 GNVNvS-~f~~~~~aG~GGFi~It~~a-~~ivF~GtftAG~~~~~i~dGrL~I~~EG~~kKfV~~V~~itFsg~~A~~~~ 454 (527)
T COG4670 377 GNVNVS-KFGGSVIAGCGGFIDITQGA-KKIVFCGTFTAGGLKVEIADGRLNIEQEGRVKKFVRDVEHITFSGKYALEQG 454 (527)
T ss_pred CcccHh-hcCCccccCCCCceehhcCc-ceEEEEeeeccCcceEEEecCeEEEEeccchhhhhhhhheeeechHHHHhcC
Confidence 444444 57888888999999999999 89998844444 355544444322 111112
Q ss_pred ceeeeEecCCCceeecCCCceEEEe-cCCCcEEEEEeecCCCCCCccccCCCCCc
Q psy12544 65 QCVDLIITEKGKMVKGMGGAMDLVA-APSTKVVVTMEHNTRDGGHKILPECSLPL 118 (140)
Q Consensus 65 ~~VNwIVTg~aVfVkG~GGaMdLve-apg~~ViV~m~H~~k~G~pKi~~~CtlPl 118 (140)
.-|- -|||+|||.... ++|.|+| +||..+ +--||.++.||+
T Consensus 455 q~V~-YVTERaVF~Lt~-~GL~L~EIAPGvDl-----------ekDIL~qmef~p 496 (527)
T COG4670 455 QDVL-YVTERAVFKLTP-DGLTLIEIAPGVDL-----------EKDILDQMEFEP 496 (527)
T ss_pred CcEE-EEEeeEEEEEcC-CCEEEEEecCCCCh-----------hhhHHhccCCCc
Confidence 2232 359999998764 4699999 888222 334888888876
No 11
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=94.34 E-value=0.046 Score=50.78 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=48.5
Q ss_pred Cccccccccceee-----------------ecC-------CCeEEEEeeecCCCC-CccccccCCC------------c-
Q psy12544 19 KMVKGMGGAMDLV-----------------AAP-------STKVVVTMEHNTRDG-GHKILPECSL------------P- 60 (140)
Q Consensus 19 k~v~gmGGAMDLv-----------------~ga-------~~~viv~m~H~~k~G-~pKi~~~ctl------------P- 60 (140)
+.+.|.||+.|.+ .|| +.|-||.|.-|.|+| .|||+++-.- |
T Consensus 362 ~~~SG~GGq~df~~~~~grrh~~~~w~~~~rgA~~~~~s~GgK~iI~l~st~~~g~~s~iV~~L~~~~~~~~~~~~g~pV 441 (543)
T TIGR01110 362 GRLAGFGGAPNMGHDPHGRRHATPAWLKMGAEFTDGDLPRGRKLVVQMVETYQEGMKPTFVETLDAWELAKKAGMPLAPV 441 (543)
T ss_pred ceeccccCccccccCcccccccchhhhhhcccccccccCCCCeEEEEeecccCCCCCceeecccchhhhhhhccCCCCce
Confidence 5689999999999 666 278888888899999 5999999852 2
Q ss_pred ccccceeeeEecCCCcee
Q psy12544 61 LTGKQCVDLIITEKGKMV 78 (140)
Q Consensus 61 lTg~~~VNwIVTg~aVfV 78 (140)
-|-+.-|++|+||.|+-.
T Consensus 442 t~~r~Dv~~VVTE~GiA~ 459 (543)
T TIGR01110 442 MIYGDDVTHIVTEEGIAY 459 (543)
T ss_pred EeccCCcCEEeccHhHhH
Confidence 346788999999977653
No 12
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=94.22 E-value=0.021 Score=51.82 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=57.4
Q ss_pred CCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceEe
Q psy12544 58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRFD 134 (140)
Q Consensus 58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav~ 134 (140)
..-|||.-++.-++.. .+.-|.||..|.+.++... |+++.=++++|+ ||||..++-.-|-+.-||.|+||.++-
T Consensus 351 evDL~Gqv~se~~~g~--~~~sG~GGq~DF~rgA~~S-iial~st~~~g~~S~Ivp~l~~vt~~r~dv~~vVTE~G~A 425 (485)
T TIGR03458 351 EADIYGNVNSTHVMGT--KMMNGIGGSGDFARNAYLS-IFMTPSIAKGGKISSIVPMVSHVDHTEHDVMVIVTEQGLA 425 (485)
T ss_pred EeccCceeeeecccCc--eEEecCccHHHHHHHHhhh-hEEeeeecCCCceeeEeecCCCcCCchhhCCEEEecCEEE
Confidence 4578888877765554 4677889999999966534 455555788886 999999985556699999999999864
No 13
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=93.89 E-value=0.031 Score=51.30 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=53.1
Q ss_pred cCCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCce-eecCCCceEEEe
Q psy12544 16 DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKM-VKGMGGAMDLVA 89 (140)
Q Consensus 16 ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVf-VkG~GGaMdLve 89 (140)
.-|...-|.||..|.+.|| +.=|+++.-+ +|+ |+|+++.+-=-|-+..|++++||.|+- .+- +.+|.|
T Consensus 367 s~G~~~sg~GGq~Dfa~GA-~~SII~~ps~--~Gris~IV~~v~~VtTpr~~Vd~VVTEyGIAvnlr---g~~l~e 436 (492)
T TIGR01584 367 SDGVIRGASGGHQDTAAGA-KLSIIVAPLV--RGRIPTVVEKVTTVITPGESIDVLVTEIGIAINPK---RKDLIE 436 (492)
T ss_pred CCCeEEecCchHHHHHhhh-cceEEEEEcC--CCCcCeEeCCCCCEECChhhCCEEEccCEEecCCC---CCCHHH
Confidence 4577789999999999999 5666666654 465 999999976677889999999999877 332 346655
No 14
>KOG2828|consensus
Probab=92.07 E-value=0.085 Score=47.84 Aligned_cols=69 Identities=25% Similarity=0.459 Sum_probs=53.7
Q ss_pred CCcccccccCCCccccccccceeeecCC------CeEEEEeeecCCCCCccccc---cCCCcccccceeeeEecCCCce
Q psy12544 8 GNSADTTPDPGKMVKGMGGAMDLVAAPS------TKVVVTMEHNTRDGGHKILP---ECSLPLTGKQCVDLIITEKGKM 77 (140)
Q Consensus 8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~------~~viv~m~H~~k~G~pKi~~---~ctlPlTg~~~VNwIVTg~aVf 77 (140)
||..+. .|-.++.-|.||..|...+|. -+=|+.+.-.|++|++|||+ +=+==.|-+.=++++|||.|.-
T Consensus 336 ~~~~s~-~vg~r~lsG~GGqvDFlr~a~~g~dglgkpiialps~t~kGqskIVP~l~~gsgVvttrah~~y~VTEhGiA 413 (454)
T KOG2828|consen 336 GQANSD-SVGSRFLSGFGGQVDFLRNAKLGFDGLGKPIIALPSRTPKGQSKIVPTLKMGSGVVTTRAHLDYLVTEHGIA 413 (454)
T ss_pred cccccc-chhhHHhhccCcchhhhhcCcccccccCCceeecCccCCCCceeecccccccCceeeeccceeEEEecccHH
Confidence 344444 675567899999999998873 24589999999999999998 5555677788889999987644
No 15
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=90.22 E-value=0.42 Score=37.61 Aligned_cols=66 Identities=21% Similarity=0.084 Sum_probs=51.5
Q ss_pred cccCC-CccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCccccccee--eeEecCCCceee
Q psy12544 14 TPDPG-KMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCV--DLIITEKGKMVK 79 (140)
Q Consensus 14 w~ipg-k~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~V--NwIVTg~aVfVk 79 (140)
|.-|. ...++.+|+.+|+..|.+-.+.+++|+.+|-..++.-+.+.+.+....+ ...+|.++++..
T Consensus 125 ~~~p~~~~~~~~~G~~~l~~~a~~~dva~i~~~~ad~~gnv~~~~~~~~~~~~~~a~a~~~tiv~ve~i 193 (217)
T PF01144_consen 125 YVDPRLVRLPGFGGAEYLAVPAIRPDVAIIHHQKADFVGNVDFEGSPGHFDDPAIAMAAKITIVTVEEI 193 (217)
T ss_dssp HGGTT-SEEEEETTEEEEEEESTSEEEEEEECEEEETTSSEESSGSSHTTHSHHHHHCEEEEEEEEEEE
T ss_pred cccccceeeeccCCcEEEEecCCccEEEEEEEcccCCcCeECEeCCCCccccccccccceEEEEEEEEE
Confidence 56687 6789999999999999434778888899999999999999998874444 366666556543
No 16
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=89.62 E-value=0.33 Score=44.89 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=55.7
Q ss_pred CCcccccccCCC-ccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCcee
Q psy12544 8 GNSADTTPDPGK-MVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMV 78 (140)
Q Consensus 8 g~~~~~w~ipgk-~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfV 78 (140)
||+.-+ .+-|. +.-|+||.-|.+.+| .--|+++.-+.|.|. |.||..++===+-+.-++++|||.|.-+
T Consensus 366 G~~NSt-~v~g~r~~nGiGGs~DF~RnA-~~SI~~~pSta~~G~IS~IVP~~~hVd~~rhdvdvvVTE~GiAd 436 (501)
T COG0427 366 GAVNST-HVGGSRQMNGIGGSGDFVRNA-YLSIFATPSTAKGGTISRIVPMLSHVDHTRHDVDVVVTEYGIAD 436 (501)
T ss_pred cccccc-cccCceeeecCCchHhhhhcc-eeeeEecccccCCCceeEEEecCCCccccccceeEEEEeechhh
Confidence 444445 56665 889999999999999 566777777889999 9999999886667889999999976554
No 17
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=85.14 E-value=0.93 Score=42.36 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=52.1
Q ss_pred CCcccccceeeeEecCCCceeecCCCceEEE-----------------e-c------CCCcEEEEEeecCCCC-CCcccc
Q psy12544 58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLV-----------------A-A------PSTKVVVTMEHNTRDG-GHKILP 112 (140)
Q Consensus 58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLv-----------------e-a------pg~~ViV~m~H~~k~G-~pKi~~ 112 (140)
..-|||.-|..-+ ...-|.||++|.. . + .|.|-||.|.-|.|+| .|||++
T Consensus 349 qiDl~Gq~sset~-----~~~SG~GGq~df~~~~~grrh~~~~w~~~~rgA~~~~~s~GgK~iI~l~st~~~g~~s~iV~ 423 (543)
T TIGR01110 349 QIDGYGNSSTATR-----GRLAGFGGAPNMGHDPHGRRHATPAWLKMGAEFTDGDLPRGRKLVVQMVETYQEGMKPTFVE 423 (543)
T ss_pred EEecCCccchhhh-----ceeccccCccccccCcccccccchhhhhhcccccccccCCCCeEEEEeecccCCCCCceeec
Confidence 3456776665555 2455778888888 3 2 3468888888899999 599999
Q ss_pred CCCC------------Ccc-ccccccEEeecceEe
Q psy12544 113 ECSL------------PLT-GKQCVDLIITEKRFD 134 (140)
Q Consensus 113 ~Ctl------------PlT-g~~~V~~iiTdlav~ 134 (140)
+-.- |.| -+.-|+.|+||.++-
T Consensus 424 ~L~~~~~~~~~~~~g~pVt~~r~Dv~~VVTE~GiA 458 (543)
T TIGR01110 424 TLDAWELAKKAGMPLAPVMIYGDDVTHIVTEEGIA 458 (543)
T ss_pred ccchhhhhhhccCCCCceEeccCCcCEEeccHhHh
Confidence 9852 333 478899999998754
No 18
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=80.62 E-value=1.4 Score=40.77 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=53.3
Q ss_pred ccccCCCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecc
Q psy12544 53 ILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEK 131 (140)
Q Consensus 53 i~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdl 131 (140)
|+..-..-|||.=++.--.. +.+.-|.||..|.+.++...+| ++.-+ +|+ |||+.+.+-=-|-...||.|+||.
T Consensus 349 InsAlEVDl~gqVnv~t~s~--G~~~sg~GGq~Dfa~GA~~SII-~~ps~--~Gris~IV~~v~~VtTpr~~Vd~VVTEy 423 (492)
T TIGR01584 349 ILSALEIDTKFNVNVMTGSD--GVIRGASGGHQDTAAGAKLSII-VAPLV--RGRIPTVVEKVTTVITPGESIDVLVTEI 423 (492)
T ss_pred EEeeEEEecCCeeeEeecCC--CeEEecCchHHHHHhhhcceEE-EEEcC--CCCcCeEeCCCCCEECChhhCCEEEccC
Confidence 34444556666655544222 3566688999999997764544 54543 464 999999975556689999999999
Q ss_pred eEe
Q psy12544 132 RFD 134 (140)
Q Consensus 132 av~ 134 (140)
++-
T Consensus 424 GIA 426 (492)
T TIGR01584 424 GIA 426 (492)
T ss_pred EEe
Confidence 865
No 19
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=73.48 E-value=4.8 Score=31.63 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=47.1
Q ss_pred eeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCcccccccc--EEeecceEec
Q psy12544 77 MVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVD--LIITEKRFDR 135 (140)
Q Consensus 77 fVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~--~iiTdlav~~ 135 (140)
..++.+|+-+|...+.+-.+.++.|+.+|-..++.-+.+.+.+....+. ..+|+++|++
T Consensus 132 ~~~~~~G~~~l~~~a~~~dva~i~~~~ad~~gnv~~~~~~~~~~~~~~a~a~~~tiv~ve~ 192 (217)
T PF01144_consen 132 RLPGFGGAEYLAVPAIRPDVAIIHHQKADFVGNVDFEGSPGHFDDPAIAMAAKITIVTVEE 192 (217)
T ss_dssp EEEEETTEEEEEEESTSEEEEEEECEEEETTSSEESSGSSHTTHSHHHHHCEEEEEEEEEE
T ss_pred eeeccCCcEEEEecCCccEEEEEEEcccCCcCeECEeCCCCccccccccccceEEEEEEEE
Confidence 4456678888888554347788889999999999999999998866665 8899998874
No 20
>KOG2828|consensus
Probab=68.06 E-value=2.6 Score=38.54 Aligned_cols=72 Identities=26% Similarity=0.481 Sum_probs=54.2
Q ss_pred CcccccceeeeEecCCCceeecCCCceEEEecCC------CcEEEEEeecCCCCCCcccc---CCCCCccccccccEEee
Q psy12544 59 LPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPS------TKVVVTMEHNTRDGGHKILP---ECSLPLTGKQCVDLIIT 129 (140)
Q Consensus 59 lPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg------~~ViV~m~H~~k~G~pKi~~---~CtlPlTg~~~V~~iiT 129 (140)
.-|||..+-+.| .. .|.-|.||..|...++. -+-++.+.-.|++|++|||+ +=+==.|-+.=++.|+|
T Consensus 332 ~dl~~~~~s~~v-g~--r~lsG~GGqvDFlr~a~~g~dglgkpiialps~t~kGqskIVP~l~~gsgVvttrah~~y~VT 408 (454)
T KOG2828|consen 332 VDLTGQANSDSV-GS--RFLSGFGGQVDFLRNAKLGFDGLGKPIIALPSRTPKGQSKIVPTLKMGSGVVTTRAHLDYLVT 408 (454)
T ss_pred eeccccccccch-hh--HHhhccCcchhhhhcCcccccccCCceeecCccCCCCceeecccccccCceeeeccceeEEEe
Confidence 457888777777 32 46667788777766221 26788999999999999998 55555677888899999
Q ss_pred cceE
Q psy12544 130 EKRF 133 (140)
Q Consensus 130 dlav 133 (140)
|.++
T Consensus 409 EhGi 412 (454)
T KOG2828|consen 409 EHGI 412 (454)
T ss_pred cccH
Confidence 9874
No 21
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=45.73 E-value=16 Score=34.15 Aligned_cols=56 Identities=23% Similarity=0.382 Sum_probs=44.8
Q ss_pred eeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceE
Q psy12544 77 MVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRF 133 (140)
Q Consensus 77 fVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav 133 (140)
+.-|.||..|.+.++- --|+++.-+.+.|. |.||..++==-+-+.-||.|+||.++
T Consensus 378 ~~nGiGGs~DF~RnA~-~SI~~~pSta~~G~IS~IVP~~~hVd~~rhdvdvvVTE~Gi 434 (501)
T COG0427 378 QMNGIGGSGDFVRNAY-LSIFATPSTAKGGTISRIVPMLSHVDHTRHDVDVVVTEYGI 434 (501)
T ss_pred eeecCCchHhhhhcce-eeeEecccccCCCceeEEEecCCCccccccceeEEEEeech
Confidence 5668899999999764 33666666779999 99999998844458999999999875
No 22
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=35.97 E-value=15 Score=34.39 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.6
Q ss_pred ccccccccceeeecCCCeEEEEeeecCCCCCccc
Q psy12544 20 MVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKI 53 (140)
Q Consensus 20 ~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi 53 (140)
++.-+||+|||...+ -|+||+=+|..||=.-|-
T Consensus 386 ~iaVtgglddlla~a-DRaIvMeDhrpkDltekr 418 (554)
T COG3044 386 TIAVTGGLDDLLAVA-DRAIVMEDHRPKDLTEKR 418 (554)
T ss_pred EEEEeccchhhhhhc-ceEEEecccCccchHHHH
Confidence 356789999999999 799999999999755553
No 23
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=31.13 E-value=21 Score=29.79 Aligned_cols=16 Identities=38% Similarity=0.901 Sum_probs=13.5
Q ss_pred cccccCCCccccccee
Q psy12544 52 KILPECSLPLTGKQCV 67 (140)
Q Consensus 52 Ki~~~ctlPlTg~~~V 67 (140)
+--++|.|||++++|.
T Consensus 15 yWCe~cNlPl~~~~c~ 30 (202)
T COG5270 15 YWCEKCNLPLLGRRCS 30 (202)
T ss_pred eehhhCCCcccccccc
Confidence 3458999999999996
No 24
>PF13996 YobH: YobH-like protein
Probab=30.17 E-value=21 Score=25.25 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=21.4
Q ss_pred cCCCCCccccccc--cEEeecceEe-ccccc
Q psy12544 112 PECSLPLTGKQCV--DLIITEKRFD-RGNCN 139 (140)
Q Consensus 112 ~~CtlPlTg~~~V--~~iiTdlav~-~~~~~ 139 (140)
=||.| ||+++.+ +.+.+|-.++ .+||.
T Consensus 37 LqCkY-LtArg~~taqy~h~~~GiIGv~~CP 66 (70)
T PF13996_consen 37 LQCKY-LTARGVVTAQYIHSDNGIIGVTDCP 66 (70)
T ss_pred eEEEE-EeecceeeeEEEecCCCEEeeccCc
Confidence 46888 8998876 5688898888 88884
No 25
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=21.57 E-value=79 Score=25.97 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=24.6
Q ss_pred CcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceE
Q psy12544 93 TKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRF 133 (140)
Q Consensus 93 ~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav 133 (140)
.+++++.+| +|-|..-...-| ...-+|.||||...
T Consensus 200 ~~~illaD~-sKf~~~~~~~~~-----~l~~id~iITD~~~ 234 (252)
T PRK10906 200 RHVMLVVDH-SKFGRNAMVNMG-----SISMVDAVYTDQLP 234 (252)
T ss_pred CcEEEEEcc-chhCCcceeEec-----CHHHCCEEEECCCC
Confidence 488999888 465655554444 34789999999654
No 26
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=20.82 E-value=41 Score=26.16 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=13.1
Q ss_pred CCCccccccccceeee
Q psy12544 17 PGKMVKGMGGAMDLVA 32 (140)
Q Consensus 17 pgk~v~gmGGAMDLv~ 32 (140)
-|+.+||-||-+|-.-
T Consensus 228 ~g~lipghGg~lDr~d 243 (259)
T PF01148_consen 228 SGNLIPGHGGILDRFD 243 (259)
T ss_pred ccccccCcCCcccchH
Confidence 4788999999999543
Done!