Query psy12544
Match_columns 140
No_of_seqs 238 out of 1112
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 22:01:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrl_B Succinyl-COA:3-ketoacid 99.9 1.3E-26 4.3E-31 185.2 3.5 90 1-92 84-189 (207)
2 3k6m_A Succinyl-COA:3-ketoacid 99.9 3.8E-23 1.3E-27 182.1 3.3 92 1-92 346-453 (481)
3 1poi_B Glutaconate coenzyme A- 99.7 1.8E-18 6.3E-23 141.7 1.6 100 2-120 86-229 (260)
4 2ahu_A Putative enzyme YDIF; C 99.7 4.1E-18 1.4E-22 150.8 1.9 103 2-119 363-504 (531)
5 3qli_A Coenzyme A transferase; 99.6 6.1E-17 2.1E-21 142.3 0.8 77 8-89 345-428 (455)
6 1xr4_A Putative citrate lyase 99.6 1E-16 3.4E-21 141.6 2.2 74 14-91 382-457 (509)
7 3rrl_B Succinyl-COA:3-ketoacid 99.6 2E-16 7E-21 126.1 3.0 66 66-134 109-174 (207)
8 2oas_A ATOA, 4-hydroxybutyrate 99.6 5.7E-17 1.9E-21 140.2 -1.3 72 14-89 319-399 (436)
9 3d3u_A 4-hydroxybutyrate COA-t 99.6 1.1E-16 3.6E-21 137.9 -0.4 72 14-89 325-405 (439)
10 2g39_A Acetyl-COA hydrolase; c 99.5 5.6E-16 1.9E-20 136.5 1.2 79 8-91 364-445 (497)
11 2hj0_A Putative citrate lyase, 99.5 1.7E-15 5.8E-20 134.2 2.6 80 7-91 380-460 (519)
12 2nvv_A Acetyl-COA hydrolase/tr 99.5 2.3E-15 7.8E-20 132.9 0.8 77 8-89 360-438 (506)
13 3gk7_A 4-hydroxybutyrate COA-t 99.4 1.5E-14 5E-19 126.6 0.2 67 14-80 324-403 (448)
14 3eh7_A 4-hydroxybutyrate COA-t 99.4 3.1E-14 1.1E-18 123.6 -0.7 77 8-89 323-408 (434)
15 3k6m_A Succinyl-COA:3-ketoacid 99.4 1.1E-13 3.6E-18 122.1 2.0 66 67-135 372-438 (481)
16 3qli_A Coenzyme A transferase; 99.1 6.2E-12 2.1E-16 110.5 -0.1 73 59-134 341-419 (455)
17 2oas_A ATOA, 4-hydroxybutyrate 99.1 6.6E-12 2.2E-16 108.6 -0.7 76 56-134 307-390 (436)
18 2g39_A Acetyl-COA hydrolase; c 99.0 4.4E-11 1.5E-15 105.4 1.4 73 59-134 360-433 (497)
19 1xr4_A Putative citrate lyase 99.0 4.2E-11 1.4E-15 105.8 1.2 70 61-135 375-445 (509)
20 3d3u_A 4-hydroxybutyrate COA-t 98.9 8.3E-11 2.9E-15 101.2 -0.1 68 65-134 321-396 (439)
21 2nvv_A Acetyl-COA hydrolase/tr 98.9 1.4E-10 4.9E-15 102.4 1.3 72 60-134 357-429 (506)
22 2ahu_A Putative enzyme YDIF; C 98.9 1.5E-10 5.1E-15 102.6 1.0 58 76-134 394-473 (531)
23 3gk7_A 4-hydroxybutyrate COA-t 98.9 1.3E-10 4.6E-15 101.6 0.5 74 58-134 314-400 (448)
24 2hj0_A Putative citrate lyase, 98.9 2.1E-10 7.2E-15 101.7 0.7 67 65-135 382-449 (519)
25 4eu9_A Succinyl-COA:acetate co 98.9 4.6E-10 1.6E-14 98.6 2.1 78 8-89 370-448 (514)
26 1poi_B Glutaconate coenzyme A- 98.7 1.6E-09 5.3E-14 88.7 0.5 58 68-134 122-196 (260)
27 3eh7_A 4-hydroxybutyrate COA-t 98.7 1.9E-09 6.4E-14 93.7 -1.2 74 58-134 318-399 (434)
28 4eu9_A Succinyl-COA:acetate co 98.1 7E-07 2.4E-11 78.4 2.1 78 54-134 361-439 (514)
No 1
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=99.92 E-value=1.3e-26 Score=185.18 Aligned_cols=90 Identities=44% Similarity=0.648 Sum_probs=84.7
Q ss_pred CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544 1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ 65 (140)
Q Consensus 1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~ 65 (140)
+|+||||||+|.. |++|+++++|+|||||++++| +|+|++|+|++|+|+|||+++|++|+|+++
T Consensus 84 ~F~~~~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d~~~~A-~~vi~~~~~t~k~G~~kiv~~~~~~~t~~~ 162 (207)
T 3rrl_B 84 SFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGA-KKVIVIMEHCNKYGESKVKKECSLPLTGKG 162 (207)
T ss_dssp HHHHHHTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHHHHHHS-SEEEEECCSBCTTSCBSEESSCSSCCSBSS
T ss_pred HHHHHhCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHHHHHhCC-CEEEEEEeeecCCCcceECccccccCCCCC
Confidence 3889999999875 999999999999999999999 999999999999999999999999999999
Q ss_pred eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544 66 CVDLIITEKGKMVKGMGGAMDLVA-APS 92 (140)
Q Consensus 66 ~VNwIVTg~aVfVkG~GGaMdLve-apg 92 (140)
+|+++|||+|+|.... ++|.|.| +|+
T Consensus 163 ~v~~vVTe~gV~~l~~-~~l~L~eiapG 189 (207)
T 3rrl_B 163 VVHQLITDLAVFEFSN-NAMKLVELQEG 189 (207)
T ss_dssp CCSEEECSSEEEEEET-TEEEEEEECTT
T ss_pred ceEEEECCceEEEEcC-CeEEEEEeCCC
Confidence 9999999999998863 4899999 887
No 2
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=99.86 E-value=3.8e-23 Score=182.11 Aligned_cols=92 Identities=51% Similarity=0.790 Sum_probs=84.9
Q ss_pred CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544 1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ 65 (140)
Q Consensus 1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~ 65 (140)
+|.+|||||+|.. |++||++++|+||+||++++|.+|+|++|+|++|+|+|||+++|++|+|+++
T Consensus 346 ~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D~~~ga~~k~ii~~~~t~k~g~~~Iv~~~~~~~t~~~ 425 (481)
T 3k6m_A 346 SFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQ 425 (481)
T ss_dssp HHHHHHTTCCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHHHHTCCTTSEEEEECCSBCGGGCBSEESSCSSCCSBSS
T ss_pred HeeeecCCCeEEEEechHhccCCCCccccccCCceeecCCcchhhhccCCceEEEEEeeEcCCCceEEecccccCCCCCC
Confidence 3889999998854 9999999999999999999993499999999999999999999999999999
Q ss_pred eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544 66 CVDLIITEKGKMVKGMGGAMDLVA-APS 92 (140)
Q Consensus 66 ~VNwIVTg~aVfVkG~GGaMdLve-apg 92 (140)
+++++|||+|+|.....++|.|.| +|+
T Consensus 426 ~v~~vVTE~gV~~l~~~~gl~L~eiapG 453 (481)
T 3k6m_A 426 CVNRIITEKAVFDVDRKKGLTLIELWEG 453 (481)
T ss_dssp CCCEEECSSEEEEEETTTEEEEEEECTT
T ss_pred cceEEEcCcEEEEecCCCcEEEEEeCCC
Confidence 999999999999985456899999 888
No 3
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=99.70 E-value=1.8e-18 Score=141.67 Aligned_cols=100 Identities=22% Similarity=0.353 Sum_probs=82.4
Q ss_pred eee-----eecCCcccc--------------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCcccccc
Q psy12544 2 FNI-----LRGGNSADT--------------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPE 56 (140)
Q Consensus 2 f~~-----ir~g~~~~~--------------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ 56 (140)
|.+ ||+|++|.. |++|++.++|+|||||++++| +++|++ +|+.| ||+++
T Consensus 86 fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D~~~~A-~~~iv~-~h~~r----k~V~~ 159 (260)
T 1poi_B 86 VGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANGIATYS-NTIIMM-QHEKR----RFMNK 159 (260)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHHHHHHS-CEEEEC-CCCTT----TBCSS
T ss_pred hcccchhhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHHHHhCC-CEEEEE-ECCCC----eeccc
Confidence 677 888888753 899999999999999999999 899999 99865 99999
Q ss_pred CC----------------Cccccc-ceeeeEecCCCceeecC-CCceEEEe-cCCCcEEEEEeecCCCCCCccccCCCCC
Q psy12544 57 CS----------------LPLTGK-QCVDLIITEKGKMVKGM-GGAMDLVA-APSTKVVVTMEHNTRDGGHKILPECSLP 117 (140)
Q Consensus 57 ct----------------lPlTg~-~~VNwIVTg~aVfVkG~-GGaMdLve-apg~~ViV~m~H~~k~G~pKi~~~CtlP 117 (140)
|+ +|+|+. ++ +++|||+|||.... .++|+|.| +|+..+ + -|+++..++
T Consensus 160 v~~vt~~G~~~~~~~r~~~~~t~~r~~-~~vVTe~gV~~~~~~~~~l~L~e~~Pgvt~-----------e-dv~~~t~f~ 226 (260)
T 1poi_B 160 IDYVTSPGWIDGPGGRERLGLPGDVGP-QLVVTDKGILKFDEKTKRMYLAAYYPTSSP-----------E-DVLENTGFD 226 (260)
T ss_dssp CSCCSBCCSTTSTTHHHHTTCCTTCCE-EEEEETTEEEEECTTTCCEEEEEECTTCCH-----------H-HHHHTCSSC
T ss_pred CceeeccCcccccccccccccccCCCC-CEEEeCceEEEecCCCCcEEEEEeCCCCCH-----------H-HHHHhcCCC
Confidence 99 999998 66 99999999997643 35899999 887222 1 366666666
Q ss_pred ccc
Q psy12544 118 LTG 120 (140)
Q Consensus 118 lTg 120 (140)
|.-
T Consensus 227 ~~v 229 (260)
T 1poi_B 227 LDV 229 (260)
T ss_dssp CCC
T ss_pred eec
Confidence 653
No 4
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=99.68 E-value=4.1e-18 Score=150.80 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=86.4
Q ss_pred eeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCC-------CC---------C
Q psy12544 2 FNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTR-------DG---------G 50 (140)
Q Consensus 2 f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k-------~G---------~ 50 (140)
|+++|+|++|.. |++ |++++|+||+||++.|| +|+|++|+|++| || .
T Consensus 363 f~~~~~g~vdvailga~eVD~~Gnvn~~~~-G~~~~G~GG~~D~~~gA-~~~i~~~~~t~~g~~~~~~~g~l~i~~eg~~ 440 (531)
T 2ahu_A 363 FDFYHGGGLDVCYLSFAEVDQHGNVGVHKF-NGKIMGTGGFIDISATS-KKIIFCGTLTAGSLKTEIADGKLNIVQEGRV 440 (531)
T ss_dssp HHHHHTTCCSEEEEECSEEETTSCEECSEE-TTEECBCTTHHHHHTTC-SEEEEECCSEESSCEEEECSSCEEEEECCSE
T ss_pred hheecCCCeEEEEeChHHhCCCCcchhhcc-CCceecCCcchhhhcCC-CeEEEEeccccCCceeeecCCeEEEeccCCC
Confidence 778888888742 555 77899999999999999 999999999999 66 6
Q ss_pred ccccccCC-Cccccc-----ceeeeEecCCCceeecCCCceEEEe-cCCCcEEEEEeecCCCCCCc-cccCCCCCcc
Q psy12544 51 HKILPECS-LPLTGK-----QCVDLIITEKGKMVKGMGGAMDLVA-APSTKVVVTMEHNTRDGGHK-ILPECSLPLT 119 (140)
Q Consensus 51 pKi~~~ct-lPlTg~-----~~VNwIVTg~aVfVkG~GGaMdLve-apg~~ViV~m~H~~k~G~pK-i~~~CtlPlT 119 (140)
||||++|+ +|+||. ++++++|||+|+|.... ++|+|.| +|+..+ -+ |+++..+++.
T Consensus 441 ~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV~~l~~-~gl~l~e~apgv~~------------e~dv~~~t~~~~~ 504 (531)
T 2ahu_A 441 KKFIRELPEITFSGKIALERGLDVRYITERAVFTLKE-DGLHLIEIAPGVDL------------QKDILDKMDFTPV 504 (531)
T ss_dssp ESEESCCSSCSBCHHHHHHTTCEEEEECSSEEEEEET-TEEEEEEECTTCCH------------HHHTGGGSSSCCE
T ss_pred ceECCCCccCCCCCcccccCCCcEEEECCCEEEEecC-CCceeeeeCCCCCH------------HHHHHHhcCCCee
Confidence 99999999 999998 89999999999998753 4799999 887222 25 7777777765
No 5
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=99.61 E-value=6.1e-17 Score=142.28 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCcccccccCCCccccccccceeeecCCCe-----EEEEeeecCCCCC-ccccccCCCcc-cccceeeeEecCCCceeec
Q psy12544 8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTK-----VVVTMEHNTRDGG-HKILPECSLPL-TGKQCVDLIITEKGKMVKG 80 (140)
Q Consensus 8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~-----viv~m~H~~k~G~-pKi~~~ctlPl-Tg~~~VNwIVTg~aVfVkG 80 (140)
|++++ |++||++++||||+||++.|| ++ +||+|+|++|+|+ ||||++|++|+ |++++|++||||+|+++..
T Consensus 345 G~v~~-~~~~~~~~~G~GG~~Df~~gA-~~s~ggk~ii~~~s~~k~G~is~Iv~~~~~~vtt~~~~v~~vvTE~Gva~l~ 422 (455)
T 3qli_A 345 GACNS-EHMLGHQYSASGGQLDFVRGA-YASKGGRSIIATPSTAAKGTVSRIIPRIDGPVTTPRIDTHYIVTEFGAVNLK 422 (455)
T ss_dssp SCEEC-CCSTTCCCGGGSSHHHHHHHH-HHSTTCEEEEECCSEETTTTEESEESCCSSSCSBCTTTCCEEEETTEEEECT
T ss_pred CCeee-eccCCeeecCcChhHHHHHHH-hhcCCCcEEEEEeCccCCCCCCeEeccCCCCcccCcccccEEEeccEEEECC
Confidence 44455 699999999999999999998 55 9999999999998 99999999885 6999999999999999863
Q ss_pred CCCceEEEe
Q psy12544 81 MGGAMDLVA 89 (140)
Q Consensus 81 ~GGaMdLve 89 (140)
|+.+.|
T Consensus 423 ---G~s~~e 428 (455)
T 3qli_A 423 ---GLSSTE 428 (455)
T ss_dssp ---TCCHHH
T ss_pred ---CCCHHH
Confidence 345544
No 6
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=99.61 E-value=1e-16 Score=141.61 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=67.8
Q ss_pred cc-cCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccceeeeEecCCCceeecCCCceEEEe-cC
Q psy12544 14 TP-DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVA-AP 91 (140)
Q Consensus 14 w~-ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLve-ap 91 (140)
|+ +||++++||||+||++.|| +++|++|+|+++ +.||||++|++|+|++++|++||||+|+++. . .+++|.| ++
T Consensus 382 ~~~~~g~~~~G~GG~~D~~~gA-~~sii~~~~t~~-~~skIV~~~~~v~t~~~~V~~iVTE~Gva~~-l-~g~~l~Era~ 457 (509)
T 1xr4_A 382 MTGSNGVLRGASGGHSDTAAGA-DLTIITAPLVRG-RIPCVVEKVLTTVTPGASVDVLVTDHGIAVN-P-ARQDLLDNLR 457 (509)
T ss_dssp SBCTTSCBCSBCTTHHHHHHHS-SEEEEECCSEET-TEESBCSSCSSCSBCGGGCCEEEETTEEEEC-T-TCHHHHHHHH
T ss_pred eeccCCeEecccccHHHHhhcc-CeEEEEEcccCC-CCCeEeeCCCCcccCcCeeCEEECCcEEEEc-C-CCCCHHHHhh
Confidence 89 7999999999999999999 999999999986 7899999999999999999999999999983 1 2589998 54
No 7
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=99.60 E-value=2e-16 Score=126.14 Aligned_cols=66 Identities=48% Similarity=0.751 Sum_probs=61.5
Q ss_pred eeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEe
Q psy12544 66 CVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFD 134 (140)
Q Consensus 66 ~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~ 134 (140)
..||.+++ +..+|+||++|++.+++ |+|++|+|++|+|+|||+++|++|+|++++|++||||+||+
T Consensus 109 vn~~~~~~--~~~~G~GGa~d~~~~A~-~vi~~~~~t~k~G~~kiv~~~~~~~t~~~~v~~vVTe~gV~ 174 (207)
T 3rrl_B 109 LANWMIPK--KLIKGMGGAMDLVHGAK-KVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVF 174 (207)
T ss_dssp EECSEETT--TEECCCTTHHHHHHHSS-EEEEECCSBCTTSCBSEESSCSSCCSBSSCCSEEECSSEEE
T ss_pred ccccccCC--eeecCcccHHHHHhCCC-EEEEEEeeecCCCcceECccccccCCCCCceEEEECCceEE
Confidence 35788887 67899999999999875 99999999999999999999999999999999999999987
No 8
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=99.59 E-value=5.7e-17 Score=140.24 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=66.9
Q ss_pred cccCCCccccccccceeeecCCCeE-----EEEeeecCCCCC-ccccccC---CCcccccceeeeEecCCCceeecCCCc
Q psy12544 14 TPDPGKMVKGMGGAMDLVAAPSTKV-----VVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLIITEKGKMVKGMGGA 84 (140)
Q Consensus 14 w~ipgk~v~gmGGAMDLv~ga~~~v-----iv~m~H~~k~G~-pKi~~~c---tlPlTg~~~VNwIVTg~aVfVkG~GGa 84 (140)
|++||++++|+||+||++.|| +++ |++|+|++|+|+ ||||++| +.|+|++++|++||||+|++.+. +
T Consensus 319 ~~~g~~~~~G~GG~~D~~~gA-~~~~ggk~ii~~~~t~k~G~iskiv~~~~~g~~v~t~~~~v~~vvTE~Gva~l~---g 394 (436)
T 2oas_A 319 DSIGTKIYSGVGGQMDFIRGA-GLSEGGRSVIALPSTAAGGRISRIASVLSPGAGVVTTRAHVHYIVTEYGAANLK---G 394 (436)
T ss_dssp SEETTEECSCCTTHHHHHHHH-HHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEECT---T
T ss_pred eecCCeeecccccHHHHhhhh-hhcCCCcEEEEEeeecCCCCCCEEeeccCCCCCcccCcccCCEEECCCEEEECC---C
Confidence 799999999999999999999 777 999999999998 9999999 99999999999999999999873 4
Q ss_pred eEEEe
Q psy12544 85 MDLVA 89 (140)
Q Consensus 85 MdLve 89 (140)
++|.|
T Consensus 395 ~~~~e 399 (436)
T 2oas_A 395 RSLRE 399 (436)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 67766
No 9
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=99.58 E-value=1.1e-16 Score=137.91 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=52.8
Q ss_pred cccCCCccccccccceeeecCCC-----eEEEEeeecCCCCC-ccccccC---CCcccccceeeeEecCCCceeecCCCc
Q psy12544 14 TPDPGKMVKGMGGAMDLVAAPST-----KVVVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLIITEKGKMVKGMGGA 84 (140)
Q Consensus 14 w~ipgk~v~gmGGAMDLv~ga~~-----~viv~m~H~~k~G~-pKi~~~c---tlPlTg~~~VNwIVTg~aVfVkG~GGa 84 (140)
|++++++++|+||+||++.|| + |+|++|+|++|+|+ ||||++| ++|+|..++|+++|||+|++... +
T Consensus 325 ~~~g~~~~~G~GG~~D~~~~A-~~s~~gk~ii~~~~t~k~G~~s~iv~~~~~g~~v~~~~~~v~~vVTE~gva~l~---g 400 (439)
T 3d3u_A 325 ESIGYEQFSGSGGQVDFLRGA-KRSKGGISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLR---G 400 (439)
T ss_dssp ------------CHHHHHHHH-TTSTTCEEEEECCSEETTTTEESEESSCC------CCSTTCSEEEETTEEEECT---T
T ss_pred eccCCeeecccccHHHHhhcc-cccCCCeEEEEEeeecCCCCCCeEeECccCCCCceeCCCcceEEECCCEEEEeC---C
Confidence 799999999999999999999 6 99999999999999 9999999 69999999999999999999864 5
Q ss_pred eEEEe
Q psy12544 85 MDLVA 89 (140)
Q Consensus 85 MdLve 89 (140)
++|.|
T Consensus 401 ~~l~e 405 (439)
T 3d3u_A 401 ATLRQ 405 (439)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 88888
No 10
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=99.55 E-value=5.6e-16 Score=136.53 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=70.9
Q ss_pred CCccccccc-CCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceeecCCCce
Q psy12544 8 GNSADTTPD-PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAM 85 (140)
Q Consensus 8 g~~~~~w~i-pgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaM 85 (140)
||+++ |++ +|++++|+||+||++.|| +++|++|+|++|+|+ ||||++|+.|+|.+++|+++|||+|+++.. |+
T Consensus 364 G~vn~-~~~~g~~~~~G~GG~~Df~~gA-~~sii~~~st~k~G~iskIv~~~~~v~t~~~~v~~vVTE~gva~l~---G~ 438 (497)
T 2g39_A 364 GNVNS-THVGGTKMMNGIGGSGDFARNA-HLAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTEQGLADLR---GL 438 (497)
T ss_dssp SCEES-SEETTTEECSCCTTHHHHHHHC-SEEEEECCSEEGGGTEESEESSCSSCSBCGGGCCEEEETTEEEECT---TC
T ss_pred Cceee-eeccCCcEEeccCcchhhhccC-CEEEEEEccccCCCCcCeEeeCCCCeecCCCceeEEECCCEEEEcc---CC
Confidence 34444 575 999999999999999999 999999999999999 999999999999999999999999999874 57
Q ss_pred EEEe-cC
Q psy12544 86 DLVA-AP 91 (140)
Q Consensus 86 dLve-ap 91 (140)
.|.| ++
T Consensus 439 ~~~era~ 445 (497)
T 2g39_A 439 APRERAR 445 (497)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8888 43
No 11
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=99.53 E-value=1.7e-15 Score=134.21 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=70.6
Q ss_pred cCCcccccc-cCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccceeeeEecCCCceeecCCCce
Q psy12544 7 GGNSADTTP-DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAM 85 (140)
Q Consensus 7 ~g~~~~~w~-ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaM 85 (140)
-||+++ |+ +||++++|+||+||+++|| +++|++|+|+ +.+.||||++|++|+|..++|++||||+|+++. . .++
T Consensus 380 ~Gnvn~-~~~~gg~~~~G~GG~~D~~~gA-~~~ii~~~~t-~g~~skiV~~~~~vtt~~~~V~~VVTE~Gva~~-l-~g~ 454 (519)
T 2hj0_A 380 NFNVNV-MTGSDGVIRGASGGHCDTAFAA-KMSLVISPLV-RGRIPTFVDKVNTVITPGTSVDVVVTEVGIAIN-P-NRP 454 (519)
T ss_dssp TCCEEC-SBCTTCCBCCBCTTHHHHHHHS-SEEEEECCSE-ETTEESBCSSCSSCSBCGGGCCEEECSSCEEEC-T-TCH
T ss_pred CCceee-eeccCCeEecccccHHHHhhcc-CeEEEEEccc-CCCCCeeccCCCCcccCCCCCCEEECCCEEEEC-C-CCC
Confidence 366666 58 9999999999999999999 9999999999 567799999999999999999999999999982 1 258
Q ss_pred EEEecC
Q psy12544 86 DLVAAP 91 (140)
Q Consensus 86 dLveap 91 (140)
+|.|-+
T Consensus 455 ~l~Era 460 (519)
T 2hj0_A 455 DLIEYF 460 (519)
T ss_dssp HHHHHT
T ss_pred CHHHHH
Confidence 999943
No 12
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=99.50 E-value=2.3e-15 Score=132.89 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=69.9
Q ss_pred CCccccccc-CCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceeecCCCce
Q psy12544 8 GNSADTTPD-PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAM 85 (140)
Q Consensus 8 g~~~~~w~i-pgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaM 85 (140)
||+++ |++ ||+++.|+||+||++.|| +++|++|+|++|+|+ ||||++|+.|.|.+++|+++|||+|+++.. |+
T Consensus 360 G~vn~-~~~~g~~~~~G~GG~~Df~~gA-~~si~~~~st~k~G~is~iV~~~~~v~~~~~~v~~vVTE~Gva~L~---G~ 434 (506)
T 2nvv_A 360 GNINS-THVSGTRMMNGIGGSGDFTRNS-YVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLR---GK 434 (506)
T ss_dssp SCEEC-SEETTTEECSCCTTHHHHHHHS-SSEEEECCSEEGGGTEESEESSCSSCSBCTTTCCEEEETTEEEECT---TC
T ss_pred Cceee-eeccCCceEcccCcHHHHhhcc-CeEEEEeccccCCCCCCeEEeCCCCcccCCCceeEEECCCEEEEcc---CC
Confidence 34444 575 999999999999999999 899999999999998 999999999999999999999999999874 57
Q ss_pred EEEe
Q psy12544 86 DLVA 89 (140)
Q Consensus 86 dLve 89 (140)
.|.|
T Consensus 435 ~~~e 438 (506)
T 2nvv_A 435 NPRE 438 (506)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8888
No 13
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=99.42 E-value=1.5e-14 Score=126.62 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=62.9
Q ss_pred cccCCCccccccccceeeecC----C--CeEEEEeeecCCCC---C-ccccccCCC---cccccceeeeEecCCCceeec
Q psy12544 14 TPDPGKMVKGMGGAMDLVAAP----S--TKVVVTMEHNTRDG---G-HKILPECSL---PLTGKQCVDLIITEKGKMVKG 80 (140)
Q Consensus 14 w~ipgk~v~gmGGAMDLv~ga----~--~~viv~m~H~~k~G---~-pKi~~~ctl---PlTg~~~VNwIVTg~aVfVkG 80 (140)
|+++|+++.|+||+||++.|| + +|+|++|+|++|+| + ||||++|+. |+|.+++|++||||+|++...
T Consensus 324 ~~~g~~~~~G~GG~~Df~~gA~~s~g~~~k~Ii~~~st~k~G~g~~is~IV~~~~~g~~v~t~~~~v~~iVTE~Gva~L~ 403 (448)
T 3gk7_A 324 DSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMK 403 (448)
T ss_dssp SEETTEECSCCTTHHHHHHHHHTCTTSCCEEEEECCSEEECTTSCEEESEESSCCTTCCCSBCTTTCCEEEETTEEEECT
T ss_pred eccCCceecccCchHHHhcchhhccCCCCcEEEEEeeeecCCCCCCCCeEeecCCCCCCceeCcCceEEEEeceEEEEcc
Confidence 699999999999999999998 1 69999999999999 5 999999999 999999999999999999864
No 14
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=99.38 E-value=3.1e-14 Score=123.62 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCcccccccCCCccccccccceeeecCCCeE-----EEEeeecCCCCC-ccccccCCC---cccccceeeeEecCCCcee
Q psy12544 8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKV-----VVTMEHNTRDGG-HKILPECSL---PLTGKQCVDLIITEKGKMV 78 (140)
Q Consensus 8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~v-----iv~m~H~~k~G~-pKi~~~ctl---PlTg~~~VNwIVTg~aVfV 78 (140)
|++++ |+++|+++.|+||+||++.|| ++. |++|+|++|+|+ ||||++|+. +.|.+++|+++|||+|++.
T Consensus 323 G~vn~-~~~g~~~~~G~GG~~Df~~ga-~~s~ggk~ii~~~st~~~G~is~iv~~~~~g~~v~~~~~~v~~vVTE~Gva~ 400 (434)
T 3eh7_A 323 GQVVS-ECIGSKQFSGTGGQVDYVRGA-AWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQ 400 (434)
T ss_dssp CCEEC-CSTTSCCSBCCCTHHHHHHHH-HHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEE
T ss_pred CCeee-eccCCeeecccCchHHHhccc-cccCCCceEEEEeeecCCCCCCeEeeCCCCCCCceeCccceeEEEcccEEEE
Confidence 44444 699999999999999999998 666 999999999999 999999999 9999999999999999998
Q ss_pred ecCCCceEEEe
Q psy12544 79 KGMGGAMDLVA 89 (140)
Q Consensus 79 kG~GGaMdLve 89 (140)
.. |+.|.|
T Consensus 401 L~---G~~~~E 408 (434)
T 3eh7_A 401 LK---GKSLRQ 408 (434)
T ss_dssp CT---TCCHHH
T ss_pred CC---CCCHHH
Confidence 63 477777
No 15
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=99.37 E-value=1.1e-13 Score=122.10 Aligned_cols=66 Identities=59% Similarity=0.954 Sum_probs=61.0
Q ss_pred eeeEecCCCceeecCCCceEEEecC-CCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544 67 VDLIITEKGKMVKGMGGAMDLVAAP-STKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR 135 (140)
Q Consensus 67 VNwIVTg~aVfVkG~GGaMdLveap-g~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~ 135 (140)
.||.+++ +..+|+||+||++.++ + |+|++|+|++|+|.|||+++|++|+|++++|++||||+||+.
T Consensus 372 n~~~~pg--~~~~G~GG~~D~~~ga~~-k~ii~~~~t~k~g~~~Iv~~~~~~~t~~~~v~~vVTE~gV~~ 438 (481)
T 3k6m_A 372 ANWMIPG--KLVKGMGGAMDLVSSAKT-KVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFD 438 (481)
T ss_dssp ECSCBTT--TBCSCCTTHHHHTCCTTS-EEEEECCSBCGGGCBSEESSCSSCCSBSSCCCEEECSSEEEE
T ss_pred cccccCC--ceeecCCcchhhhccCCc-eEEEEEeeEcCCCceEEecccccCCCCCCcceEEEcCcEEEE
Confidence 5888876 6789999999999977 5 999999999999999999999999999999999999999873
No 16
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=99.11 E-value=6.2e-12 Score=110.55 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=61.6
Q ss_pred CcccccceeeeEecCCCceeecCCCceEEEecC----CCcEEEEEeecCCCCC-CccccCCCCCc-cccccccEEeecce
Q psy12544 59 LPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAP----STKVVVTMEHNTRDGG-HKILPECSLPL-TGKQCVDLIITEKR 132 (140)
Q Consensus 59 lPlTg~~~VNwIVTg~aVfVkG~GGaMdLveap----g~~ViV~m~H~~k~G~-pKi~~~CtlPl-Tg~~~V~~iiTdla 132 (140)
.-|+| .+.||.+.+ .+..|+||.||++.++ +-|+||+|+|++|+|+ ||||++|++|+ |++++||+||||++
T Consensus 341 vd~~G-~v~~~~~~~--~~~~G~GG~~Df~~gA~~s~ggk~ii~~~s~~k~G~is~Iv~~~~~~vtt~~~~v~~vvTE~G 417 (455)
T 3qli_A 341 IDLTG-ACNSEHMLG--HQYSASGGQLDFVRGAYASKGGRSIIATPSTAAKGTVSRIIPRIDGPVTTPRIDTHYIVTEFG 417 (455)
T ss_dssp EETTS-CEECCCSTT--CCCGGGSSHHHHHHHHHHSTTCEEEEECCSEETTTTEESEESCCSSSCSBCTTTCCEEEETTE
T ss_pred EecCC-CeeeeccCC--eeecCcChhHHHHHHHhhcCCCcEEEEEeCccCCCCCCeEeccCCCCcccCcccccEEEeccE
Confidence 45666 456677764 7889999999999843 3369999999999998 99999999885 69999999999999
Q ss_pred Ee
Q psy12544 133 FD 134 (140)
Q Consensus 133 v~ 134 (140)
+.
T Consensus 418 va 419 (455)
T 3qli_A 418 AV 419 (455)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 17
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=99.10 E-value=6.6e-12 Score=108.61 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=62.5
Q ss_pred cCCCcccccceeeeEecCCCceeecCCCceEEEecCC----CcEEEEEeecCCCCC-CccccCC---CCCccccccccEE
Q psy12544 56 ECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPS----TKVVVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLI 127 (140)
Q Consensus 56 ~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg----~~ViV~m~H~~k~G~-pKi~~~C---tlPlTg~~~V~~i 127 (140)
--..-++|. +.+|.+++ .+..|+||.+|++.++. -|.|++|+||+|+|+ ||||++| +.|+|++++||+|
T Consensus 307 a~evD~~G~-vn~~~~g~--~~~~G~GG~~D~~~gA~~~~ggk~ii~~~~t~k~G~iskiv~~~~~g~~v~t~~~~v~~v 383 (436)
T 2oas_A 307 ALQVDLTGQ-VCADSIGT--KIYSGVGGQMDFIRGAGLSEGGRSVIALPSTAAGGRISRIASVLSPGAGVVTTRAHVHYI 383 (436)
T ss_dssp CSEEETTCC-EECSEETT--EECSCCTTHHHHHHHHHHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEE
T ss_pred cceecCCCC-eeeeecCC--eeecccccHHHHhhhhhhcCCCcEEEEEeeecCCCCCCEEeeccCCCCCcccCcccCCEE
Confidence 334456664 44555655 68899999999999553 245999999999998 9999999 9999999999999
Q ss_pred eecceEe
Q psy12544 128 ITEKRFD 134 (140)
Q Consensus 128 iTdlav~ 134 (140)
|||+++.
T Consensus 384 vTE~Gva 390 (436)
T 2oas_A 384 VTEYGAA 390 (436)
T ss_dssp EETTEEE
T ss_pred ECCCEEE
Confidence 9999976
No 18
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=99.02 E-value=4.4e-11 Score=105.43 Aligned_cols=73 Identities=19% Similarity=0.337 Sum_probs=62.3
Q ss_pred CcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceEe
Q psy12544 59 LPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRFD 134 (140)
Q Consensus 59 lPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav~ 134 (140)
.-++|.-+++.+..+ .+..|+||.+|++.++. ++|++|+|++|+|+ ||||++|+.|+|.+++||+||||++|.
T Consensus 360 vD~~G~vn~~~~~g~--~~~~G~GG~~Df~~gA~-~sii~~~st~k~G~iskIv~~~~~v~t~~~~v~~vVTE~gva 433 (497)
T 2g39_A 360 FDIYGNVNSTHVGGT--KMMNGIGGSGDFARNAH-LAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTEQGLA 433 (497)
T ss_dssp EETTSCEESSEETTT--EECSCCTTHHHHHHHCS-EEEEECCSEEGGGTEESEESSCSSCSBCGGGCCEEEETTEEE
T ss_pred ccCCCceeeeeccCC--cEEeccCcchhhhccCC-EEEEEEccccCCCCcCeEeeCCCCeecCCCceeEEECCCEEE
Confidence 345554444443454 68889999999999885 99999999999999 999999999999999999999999986
No 19
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=99.02 E-value=4.2e-11 Score=105.81 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=59.8
Q ss_pred ccccceeeeE-ecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544 61 LTGKQCVDLI-ITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR 135 (140)
Q Consensus 61 lTg~~~VNwI-VTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~ 135 (140)
++|. +.+|. +.+ .+..|+||+||++.+++ ++|++|+|+++ +.||||++|++|+|+.++||+||||++|..
T Consensus 375 ~~G~-vn~~~~~~g--~~~~G~GG~~D~~~gA~-~sii~~~~t~~-~~skIV~~~~~v~t~~~~V~~iVTE~Gva~ 445 (509)
T 1xr4_A 375 VNFN-VNVMTGSNG--VLRGASGGHSDTAAGAD-LTIITAPLVRG-RIPCVVEKVLTTVTPGASVDVLVTDHGIAV 445 (509)
T ss_dssp TTCC-EECSBCTTS--CBCSBCTTHHHHHHHSS-EEEEECCSEET-TEESBCSSCSSCSBCGGGCCEEEETTEEEE
T ss_pred cCCc-eeeeeccCC--eEecccccHHHHhhccC-eEEEEEcccCC-CCCeEeeCCCCcccCcCeeCEEECCcEEEE
Confidence 4443 34555 565 68899999999999885 99999999985 789999999999999999999999999874
No 20
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=98.94 E-value=8.3e-11 Score=101.24 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=45.2
Q ss_pred ceeeeEecCCCceeecCCCceEEEecCC----CcEEEEEeecCCCCC-CccccCC---CCCccccccccEEeecceEe
Q psy12544 65 QCVDLIITEKGKMVKGMGGAMDLVAAPS----TKVVVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLIITEKRFD 134 (140)
Q Consensus 65 ~~VNwIVTg~aVfVkG~GGaMdLveapg----~~ViV~m~H~~k~G~-pKi~~~C---tlPlTg~~~V~~iiTdlav~ 134 (140)
++.+|.+.+ .+..|+||.+|++.++. .|+|++|+|++|+|+ |||+++| ++|+|..++||+||||+++.
T Consensus 321 ~vn~~~~g~--~~~~G~GG~~D~~~~A~~s~~gk~ii~~~~t~k~G~~s~iv~~~~~g~~v~~~~~~v~~vVTE~gva 396 (439)
T 3d3u_A 321 QAASESIGY--EQFSGSGGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVA 396 (439)
T ss_dssp CC----------------CHHHHHHHHTTSTTCEEEEECCSEETTTTEESEESSCC------CCSTTCSEEEETTEEE
T ss_pred CEeeeccCC--eeecccccHHHHhhcccccCCCeEEEEEeeecCCCCCCeEeECccCCCCceeCCCcceEEECCCEEE
Confidence 344566654 67899999999999542 289999999999999 9999999 69999999999999999987
No 21
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=98.94 E-value=1.4e-10 Score=102.36 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=61.9
Q ss_pred cccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceEe
Q psy12544 60 PLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRFD 134 (140)
Q Consensus 60 PlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav~ 134 (140)
-++|.-+++.+.++ .+..|+||.+|++.+++ ++|++|+||+|+|+ ||||++|+.+.|.+++||.||||++|.
T Consensus 357 D~~G~vn~~~~~g~--~~~~G~GG~~Df~~gA~-~si~~~~st~k~G~is~iV~~~~~v~~~~~~v~~vVTE~Gva 429 (506)
T 2nvv_A 357 DIFGNINSTHVSGT--RMMNGIGGSGDFTRNSY-VSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVA 429 (506)
T ss_dssp ETTSCEECSEETTT--EECSCCTTHHHHHHHSS-SEEEECCSEEGGGTEESEESSCSSCSBCTTTCCEEEETTEEE
T ss_pred cCCCceeeeeccCC--ceEcccCcHHHHhhccC-eEEEEeccccCCCCCCeEEeCCCCcccCCCceeEEECCCEEE
Confidence 45554444444465 67889999999999885 99999999999998 999999999999999999999999986
No 22
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=98.93 E-value=1.5e-10 Score=102.57 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=53.7
Q ss_pred ceeecCCCceEEEecCCCcEEEEEeecCC-------CC---------CCccccCCC-CCcccc-----ccccEEeecceE
Q psy12544 76 KMVKGMGGAMDLVAAPSTKVVVTMEHNTR-------DG---------GHKILPECS-LPLTGK-----QCVDLIITEKRF 133 (140)
Q Consensus 76 VfVkG~GGaMdLveapg~~ViV~m~H~~k-------~G---------~pKi~~~Ct-lPlTg~-----~~V~~iiTdlav 133 (140)
...+|+||++|++.+++ ++|++|+|++| +| .||||++|+ +|+||. ++|++||||+||
T Consensus 394 ~~~~G~GG~~D~~~gA~-~~i~~~~~t~~g~~~~~~~g~l~i~~eg~~~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV 472 (531)
T 2ahu_A 394 GKIMGTGGFIDISATSK-KIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAV 472 (531)
T ss_dssp TEECBCTTHHHHHTTCS-EEEEECCSEESSCEEEECSSCEEEEECCSEESEESCCSSCSBCHHHHHHTTCEEEEECSSEE
T ss_pred CceecCCcchhhhcCCC-eEEEEeccccCCceeeecCCeEEEeccCCCceECCCCccCCCCCcccccCCCcEEEECCCEE
Confidence 46799999999999886 99999999999 56 699999999 999998 899999999998
Q ss_pred e
Q psy12544 134 D 134 (140)
Q Consensus 134 ~ 134 (140)
+
T Consensus 473 ~ 473 (531)
T 2ahu_A 473 F 473 (531)
T ss_dssp E
T ss_pred E
Confidence 7
No 23
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=98.92 E-value=1.3e-10 Score=101.61 Aligned_cols=74 Identities=24% Similarity=0.366 Sum_probs=62.4
Q ss_pred CCcccccceeeeEecCCCceeecCCCceEEEecC----C--CcEEEEEeecCCCC---C-CccccCCCC---Cccccccc
Q psy12544 58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAP----S--TKVVVTMEHNTRDG---G-HKILPECSL---PLTGKQCV 124 (140)
Q Consensus 58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveap----g--~~ViV~m~H~~k~G---~-pKi~~~Ctl---PlTg~~~V 124 (140)
..-|+|. +.+|.+++ .+..|+||.+|++.++ + .|+|++|+||+|+| + ||||++|+. ++|.+++|
T Consensus 314 evD~~G~-vns~~~g~--~~~~G~GG~~Df~~gA~~s~g~~~k~Ii~~~st~k~G~g~~is~IV~~~~~g~~v~t~~~~v 390 (448)
T 3gk7_A 314 QVDFMGQ-IVSDSIGT--KQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDA 390 (448)
T ss_dssp EEETTCC-EECSEETT--EECSCCTTHHHHHHHHHTCTTSCCEEEEECCSEEECTTSCEEESEESSCCTTCCCSBCTTTC
T ss_pred eeccCCC-eeeeccCC--ceecccCchHHHhcchhhccCCCCcEEEEEeeeecCCCCCCCCeEeecCCCCCCceeCcCce
Confidence 3456665 44666654 6788999999999955 2 39999999999999 5 999999999 99999999
Q ss_pred cEEeecceEe
Q psy12544 125 DLIITEKRFD 134 (140)
Q Consensus 125 ~~iiTdlav~ 134 (140)
|.||||+++.
T Consensus 391 ~~iVTE~Gva 400 (448)
T 3gk7_A 391 DYVVTEYGIA 400 (448)
T ss_dssp CEEEETTEEE
T ss_pred EEEEeceEEE
Confidence 9999999976
No 24
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=98.89 E-value=2.1e-10 Score=101.69 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=58.4
Q ss_pred ceeeeE-ecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544 65 QCVDLI-ITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR 135 (140)
Q Consensus 65 ~~VNwI-VTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~ 135 (140)
.+.+|. +.+ .+..|+||++|++.+++ ++|++|+|+ +.+.||||++|++|+|..++||+||||++|..
T Consensus 382 nvn~~~~~gg--~~~~G~GG~~D~~~gA~-~~ii~~~~t-~g~~skiV~~~~~vtt~~~~V~~VVTE~Gva~ 449 (519)
T 2hj0_A 382 NVNVMTGSDG--VIRGASGGHCDTAFAAK-MSLVISPLV-RGRIPTFVDKVNTVITPGTSVDVVVTEVGIAI 449 (519)
T ss_dssp CEECSBCTTC--CBCCBCTTHHHHHHHSS-EEEEECCSE-ETTEESBCSSCSSCSBCGGGCCEEECSSCEEE
T ss_pred ceeeeeccCC--eEecccccHHHHhhccC-eEEEEEccc-CCCCCeeccCCCCcccCCCCCCEEECCCEEEE
Confidence 345566 555 67899999999999885 999999999 56789999999999999999999999999874
No 25
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=98.87 E-value=4.6e-10 Score=98.62 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=67.2
Q ss_pred CCcccccccCCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceeecCCCceE
Q psy12544 8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMD 86 (140)
Q Consensus 8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMd 86 (140)
|++..++..+++++.|+||.+|++.|| ++.|+++.+++|+|+ ||||+.|+.+.|.+..|++||||.|+...- |+.
T Consensus 370 GqVns~~~~g~~~~sG~GG~~Df~~gA-~~si~~~~st~k~g~is~ivp~~~~v~~~~~~v~~vVTE~Gva~Lr---G~s 445 (514)
T 4eu9_A 370 GNVNSTRVMGSKMMNGIGGSGDFARSS-YLSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLR---GLS 445 (514)
T ss_dssp CCEESSEETTTEECSCCTTHHHHHHHS-SEEEEECCSEETTTTEESEESSCSSCSBCGGGCCEEEETTEEEECT---TCC
T ss_pred CceeeeeccCcceecCccchHHHhhcc-CcEEEEEeeecCCCcccccccCCCCccCCCCcCCEEEcCCEEEEec---CCC
Confidence 455444344778899999999999999 899999999999998 999999999999999999999999998752 355
Q ss_pred EEe
Q psy12544 87 LVA 89 (140)
Q Consensus 87 Lve 89 (140)
+.|
T Consensus 446 ~~e 448 (514)
T 4eu9_A 446 PVQ 448 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 26
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=98.73 E-value=1.6e-09 Score=88.72 Aligned_cols=58 Identities=22% Similarity=0.423 Sum_probs=51.7
Q ss_pred eeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCC----------------CCcccc-ccccEEeec
Q psy12544 68 DLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECS----------------LPLTGK-QCVDLIITE 130 (140)
Q Consensus 68 NwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~Ct----------------lPlTg~-~~V~~iiTd 130 (140)
||..++ +..+|+||++|++.+++ ++|++ +|+.| ||+++|+ +|+|+. ++ ++||||
T Consensus 122 ~~~~p~--~~~~G~GGa~D~~~~A~-~~iv~-~h~~r----k~V~~v~~vt~~G~~~~~~~r~~~~~t~~r~~-~~vVTe 192 (260)
T 1poi_B 122 DYHHPK--TRFTGSGGANGIATYSN-TIIMM-QHEKR----RFMNKIDYVTSPGWIDGPGGRERLGLPGDVGP-QLVVTD 192 (260)
T ss_dssp CSSSEE--EECCCCTTHHHHHHHSC-EEEEC-CCCTT----TBCSSCSCCSBCCSTTSTTHHHHTTCCTTCCE-EEEEET
T ss_pred CcCCCc--eEeecccchHHHHhCCC-EEEEE-ECCCC----eecccCceeeccCcccccccccccccccCCCC-CEEEeC
Confidence 788886 67899999999999875 89999 99865 9999999 999998 55 999999
Q ss_pred ceEe
Q psy12544 131 KRFD 134 (140)
Q Consensus 131 lav~ 134 (140)
+||+
T Consensus 193 ~gV~ 196 (260)
T 1poi_B 193 KGIL 196 (260)
T ss_dssp TEEE
T ss_pred ceEE
Confidence 9987
No 27
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=98.65 E-value=1.9e-09 Score=93.70 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=61.1
Q ss_pred CCcccccceeeeEecCCCceeecCCCceEEEecC----CCcEEEEEeecCCCCC-CccccCCCC---CccccccccEEee
Q psy12544 58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAP----STKVVVTMEHNTRDGG-HKILPECSL---PLTGKQCVDLIIT 129 (140)
Q Consensus 58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveap----g~~ViV~m~H~~k~G~-pKi~~~Ctl---PlTg~~~V~~iiT 129 (140)
..-|+|.-++ |.+.+ .+..|+||.+|++.++ +-|.|++|+||+|+|+ ||||++|+. +.|.+.+||+|||
T Consensus 318 evD~~G~vn~-~~~g~--~~~~G~GG~~Df~~ga~~s~ggk~ii~~~st~~~G~is~iv~~~~~g~~v~~~~~~v~~vVT 394 (434)
T 3eh7_A 318 EIDLMGQVVS-ECIGS--KQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVT 394 (434)
T ss_dssp EEETTCCEEC-CSTTS--CCSBCCCTHHHHHHHHHHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEE
T ss_pred eeccCCCeee-eccCC--eeecccCchHHHhccccccCCCceEEEEeeecCCCCCCeEeeCCCCCCCceeCccceeEEEc
Confidence 3456665554 44454 6778999999999843 2356999999999999 999999999 9999999999999
Q ss_pred cceEe
Q psy12544 130 EKRFD 134 (140)
Q Consensus 130 dlav~ 134 (140)
|+++.
T Consensus 395 E~Gva 399 (434)
T 3eh7_A 395 EYGIA 399 (434)
T ss_dssp TTEEE
T ss_pred ccEEE
Confidence 99987
No 28
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=98.12 E-value=7e-07 Score=78.43 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=68.1
Q ss_pred cccCCCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecce
Q psy12544 54 LPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKR 132 (140)
Q Consensus 54 ~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdla 132 (140)
+.--..-|+|.-+++++... .+..|.||.+|++.++. +.|+++.+++|+|+ ||||+.|+-+.|.+..||.|+||.+
T Consensus 361 n~a~EvDl~GqVns~~~~g~--~~~sG~GG~~Df~~gA~-~si~~~~st~k~g~is~ivp~~~~v~~~~~~v~~vVTE~G 437 (514)
T 4eu9_A 361 NGMIEADIYGNVNSTRVMGS--KMMNGIGGSGDFARSSY-LSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQG 437 (514)
T ss_dssp ECCSEEETTCCEESSEETTT--EECSCCTTHHHHHHHSS-EEEEECCSEETTTTEESEESSCSSCSBCGGGCCEEEETTE
T ss_pred ecceEecccCceeeeeccCc--ceecCccchHHHhhccC-cEEEEEeeecCCCcccccccCCCCccCCCCcCCEEEcCCE
Confidence 44455668888888888665 56779999999999885 89999999999998 9999999999999999999999999
Q ss_pred Ee
Q psy12544 133 FD 134 (140)
Q Consensus 133 v~ 134 (140)
+-
T Consensus 438 va 439 (514)
T 4eu9_A 438 LA 439 (514)
T ss_dssp EE
T ss_pred EE
Confidence 75
Done!