RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12544
(140 letters)
>gnl|CDD|188219 TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferase, B subunit.
Various members of this family are characterized as the
B subunits of succinyl-CoA:3-ketoacid-CoA transferase
(EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase
(EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase
(EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase
(EC 2.8.3.9). This represents a very distinct clade with
strong sequence conservation within the larger family
defined by pfam01144. The A subunit represents a
different clade in pfam01144.
Length = 207
Score = 95.4 bits (238), Expect = 1e-25
Identities = 38/61 (62%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGK 76
PGK+V GMGGAMDLVA +V+V MEH T+DG KIL EC+LPLTG +CVD I+TE
Sbjct: 117 PGKLVPGMGGAMDLVAGAK-RVIVAMEHTTKDGESKILKECTLPLTGAKCVDRIVTELAV 175
Query: 77 M 77
Sbjct: 176 F 176
Score = 92.4 bits (230), Expect = 3e-24
Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GK+V GMGGAMDLVA +V+V MEH T+DG KIL EC+LPLTG +CVD I+TE
Sbjct: 118 GKLVPGMGGAMDLVAGAK-RVIVAMEHTTKDGESKILKECTLPLTGAKCVDRIVTE 172
>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta
subunit [Lipid metabolism].
Length = 225
Score = 89.3 bits (222), Expect = 5e-23
Identities = 40/73 (54%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGK 76
PGKMV GMGGAMDLV + KV+V MEH + G KIL EC+LPLTG CVD +IT+
Sbjct: 122 PGKMVPGMGGAMDLVTG-AKKVIVVMEHTKKSGVGKILKECTLPLTGNGCVDRVITDLAV 180
Query: 77 MVKGMGGAMDLVA 89
GG + LV
Sbjct: 181 FEFDPGGELTLVE 193
Score = 85.4 bits (212), Expect = 2e-21
Identities = 38/65 (58%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK--- 131
GKMV GMGGAMDLV + KV+V MEH + G KIL EC+LPLTG CVD +IT+
Sbjct: 123 GKMVPGMGGAMDLVTG-AKKVIVVMEHTKKSGVGKILKECTLPLTGNGCVDRVITDLAVF 181
Query: 132 RFDRG 136
FD G
Sbjct: 182 EFDPG 186
>gnl|CDD|201623 pfam01144, CoA_trans, Coenzyme A transferase.
Length = 216
Score = 56.5 bits (137), Expect = 1e-10
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 12 DTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVD--L 69
T P K V G GGAM L+ V ++ + DG ++ + V
Sbjct: 123 GTYVAPKKRVPGFGGAMYLLEGALRADVALIKASKADGEGNLVFRTTAGNFNGPAVAAAA 182
Query: 70 IITEKG 75
+T
Sbjct: 183 KVTILE 188
Score = 53.4 bits (129), Expect = 1e-09
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 73 EKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVD--LIITE 130
K V G GGAM L+ V ++ + DG ++ + V +T
Sbjct: 127 APKKRVPGFGGAMYLLEGALRADVALIKASKADGEGNLVFRTTAGNFNGPAVAAAAKVTI 186
Query: 131 K 131
Sbjct: 187 L 187
>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase. Coenzyme A (CoA)
transferases belong to an evolutionary conserved family
of enzymes catalyzing the reversible transfer of CoA
from one carboxylic acid to another. They have been
identified in many prokaryotes and in mammalian tissues.
The bacterial enzymes are heterodimer of two subunits (A
and B) of about 25 Kd each while eukaryotic SCOT consist
of a single chain which is colinear with the two
bacterial subunits.
Length = 212
Score = 49.5 bits (119), Expect = 4e-08
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 16 DPGKMVK-GMGGAMDLVAAPSTKVVVTMEHNTRDGG----HKILPECSLPLTGKQ----- 65
+ GK+ GMGGA LV A V + H + G K C LPLT
Sbjct: 123 EGGKVRPFGMGGAYLLVPAIRPDVALIRAHTADEFGNLVYEKEATSCGLPLTAAAAKKVI 182
Query: 66 CVDLIITEKG 75
I + G
Sbjct: 183 VQVEEIVDLG 192
Score = 46.8 bits (112), Expect = 4e-07
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 73 EKGKMVK-GMGGAMDLVAAPSTKVVVTMEHNTRDGG----HKILPECSLPLTGKQ----- 122
E GK+ GMGGA LV A V + H + G K C LPLT
Sbjct: 123 EGGKVRPFGMGGAYLLVPAIRPDVALIRAHTADEFGNLVYEKEATSCGLPLTAAAAKKVI 182
Query: 123 CVDLIITEK 131
I +
Sbjct: 183 VQVEEIVDL 191
>gnl|CDD|205516 pfam13336, AcetylCoA_hyd_C, Acetyl-CoA hydrolase/transferase
C-terminal domain. This family contains several enzymes
which take part in pathways involving acetyl-CoA.
Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation
of acetate from acetyl-CoA, CoA transferase (CAT1)
EC:2.8.3.- produces succinyl-CoA, and acetate-CoA
transferase EC:2.8.3.8 utilises acyl-CoA and acetate to
form acetyl-CoA.
Length = 152
Score = 29.7 bits (68), Expect = 0.27
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 61 LTGKQCVDLIITEKGKMVKGMGGAMDLVA----APSTKVVVTMEHNTRDGGH-KILPECS 115
LTG+ + I G+ G+GG +D V + K ++ + +DG +I+P S
Sbjct: 46 LTGQVNSESI---GGRQYSGVGGQLDFVRGAYLSKGGKSIIALPSTAKDGTISRIVPTLS 102
Query: 116 LPL---TGKQCVDLIITE 130
T + VD ++TE
Sbjct: 103 PGAHVTTPRHDVDYVVTE 120
Score = 29.7 bits (68), Expect = 0.32
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 18 GKMVKGMGGAMDLVA----APSTKVVVTMEHNTRDGGH-KILPECSLPL---TGKQCVDL 69
G+ G+GG +D V + K ++ + +DG +I+P S T + VD
Sbjct: 57 GRQYSGVGGQLDFVRGAYLSKGGKSIIALPSTAKDGTISRIVPTLSPGAHVTTPRHDVDY 116
Query: 70 IITEKG 75
++TE G
Sbjct: 117 VVTEYG 122
>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase.
Length = 1102
Score = 27.8 bits (62), Expect = 2.5
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 42 MEHNTRDGGHKILPECSLP--LTGKQCVDLIITEKGKMVKGMG--GAMDLVAAPSTK-VV 96
MEH + G H CSLP C+ I K+ K + G M+ A + V
Sbjct: 808 MEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEV 867
Query: 97 VTMEHNTRDG----------GHKILPECSLPLTGKQCVDLIITEK 131
+E N R GH + SL ++GK DL TE+
Sbjct: 868 YIIEANPRASRTVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEE 912
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 27.1 bits (61), Expect = 3.1
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 71 ITEKGKMVKGMGGAM---DLVAAPSTKVVV 97
+ ++KG GGA+ +VA+ + + +V
Sbjct: 88 VDPNLNLIKGGGGALLREKIVASAAKRFIV 117
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 26.3 bits (59), Expect = 4.8
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 71 ITEKGKMVKGMGGAM---DLVAAPSTKVVV 97
+ ++KG GGA+ +VA+ + K +V
Sbjct: 40 VDPNLNLIKGGGGALLREKIVASAAKKFIV 69
>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic
Malate dehydrogenases. MDH is one of the key enzymes in
the citric acid cycle, facilitating both the conversion
of malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate.
Members of this subfamily are eukaryotic MDHs localized
to the cytoplasm and cytosol. MDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 325
Score = 26.4 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 68 DLIITEKGKMVKGMGGAMDLVAAPSTKVVV 97
DL+ K+ K G A+D A + KV+V
Sbjct: 98 DLL-KANVKIFKEQGEALDKYAKKNVKVLV 126
Score = 26.0 bits (58), Expect = 6.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 18 GKMVKGMGGAMDLVAAPSTKVVV 40
K+ K G A+D A + KV+V
Sbjct: 104 VKIFKEQGEALDKYAKKNVKVLV 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,924,827
Number of extensions: 587776
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 26
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)