RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12544
(140 letters)
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 269
Score = 65.7 bits (160), Expect = 2e-14
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCV 67
N T G + GG D A + + R ++ + +T V
Sbjct: 138 FNVNVMTGSNGVLRGASGGHSDTAAG--ADLTIITAPLVRGRIPCVVEKVLTTVTPGASV 195
Query: 68 DLIITEKGKMVKGMGGAMDLVA 89
D+++T+ G V +
Sbjct: 196 DVLVTDHGIAVNPARQDLLDNL 217
Score = 59.1 bits (143), Expect = 4e-12
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
G + GG D A + + R ++ + +T VD+++T+
Sbjct: 148 GVLRGASGGHSDTAAG--ADLTIITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTD 201
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 221
Score = 52.4 bits (125), Expect = 1e-09
Identities = 42/72 (58%), Positives = 53/72 (73%)
Query: 17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGK 76
PGK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 117 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAV 176
Query: 77 MVKGMGGAMDLV 88
+ L+
Sbjct: 177 FDVDRKKGLTLI 188
Score = 48.2 bits (114), Expect = 3e-08
Identities = 39/56 (69%), Positives = 48/56 (85%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
GK+VKGMGGAMDLV++ TKVVVTMEH+ + HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 118 GKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 173
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 274
Score = 51.0 bits (122), Expect = 4e-09
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGH-KILPECSLPLTGKQC 66
GN T KM+ G+GG+ D + + + + G ++P S +
Sbjct: 141 GNVNSTHVGGTKMMNGIGGSGDFARN-AHLAIFVTKSIAKGGNISSVVPMVSHVDHTEHD 199
Query: 67 VDLIITEKG 75
VD+++TE+G
Sbjct: 200 VDILVTEQG 208
Score = 47.2 bits (112), Expect = 8e-08
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGH-KILPECSLPLTGKQCVDLIITE 130
KM+ G+GG+ D + + + + G ++P S + VD+++TE
Sbjct: 151 TKMMNGIGGSGDFARN-AHLAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTE 206
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta
{Acidaminococcus fermentans [TaxId: 905]}
Length = 260
Score = 50.0 bits (119), Expect = 8e-09
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 15/88 (17%)
Query: 15 PDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRD------------GGHKILPECSLPLT 62
P G GGA + +T ++ M+H R L L
Sbjct: 124 HHPKTRFTGSGGANGIATYSNTIIM--MQHEKRRFMNKIDYVTSPGWIDGPGGRERLGLP 181
Query: 63 GKQCVDLIITEKGKM-VKGMGGAMDLVA 89
G L++T+KG + M L A
Sbjct: 182 GDVGPQLVVTDKGILKFDEKTKRMYLAA 209
Score = 45.7 bits (108), Expect = 2e-07
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRD------------GGHKILPECSLPLTGKQ 122
G GGA + +T ++ M+H R L L G
Sbjct: 127 KTRFTGSGGANGIATYSNTIIM--MQHEKRRFMNKIDYVTSPGWIDGPGGRERLGLPGDV 184
Query: 123 CVDLIITEK 131
L++T+K
Sbjct: 185 GPQLVVTDK 193
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 247
Score = 33.5 bits (76), Expect = 0.005
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 23/82 (28%)
Query: 18 GKMVKGMGGAMDLVAAPSTKVVVTMEHN---------------TRDGGHKILPECSLPLT 62
+ G GG +D+ A S K++ ++G K +T
Sbjct: 111 NGKIMGTGGFIDISAT-SKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEIT 169
Query: 63 G-------KQCVDLIITEKGKM 77
+ ITE+
Sbjct: 170 FSGKIALERGLDVRYITERAVF 191
Score = 31.9 bits (72), Expect = 0.015
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 23/79 (29%)
Query: 75 GKMVKGMGGAMDLVAAPSTKVVVTMEHN---------------TRDGGHKILPECSLPLT 119
+ G GG +D+ A S K++ ++G K +T
Sbjct: 111 NGKIMGTGGFIDISAT-SKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEIT 169
Query: 120 G-------KQCVDLIITEK 131
+ ITE+
Sbjct: 170 FSGKIALERGLDVRYITER 188
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 29.8 bits (67), Expect = 0.060
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 18 GKMVKGMGGAM---DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 74
G MV G G AM D+V + ++ ++ + L+ + +++
Sbjct: 22 GCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIF 81
Query: 75 GKMVKGMGGAMDLVAA-----PSTKVVVTMEHNTRDGGHKILPECSLPLT 119
G +V+ A ++ A + VVV +E N + G K L + L +
Sbjct: 82 GGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNII 131
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 27.9 bits (62), Expect = 0.32
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 8/110 (7%)
Query: 18 GKMVKGMGGAM---DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 74
V G G AM D++ K ++ ++ L + +++
Sbjct: 22 ACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIF 81
Query: 75 GKMVKGMGGAMDLVAA-----PSTKVVVTMEHNTRDGGHKILPECSLPLT 119
G +V A + A +VV +E IL LP+T
Sbjct: 82 GGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPIT 131
>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 282
Score = 27.1 bits (60), Expect = 0.64
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 31 VAAPSTKVVVTMEHNTRDGGHKILPECSLPLTG-------KQCVDLIITEKGKMVKGMGG 83
+A ++ +T K PE + G K + II ++K G
Sbjct: 204 IAMQYHRIAITTGRKAWLYARKKFPEYQPFVFGVHIDEALKHPGEKIIVGFPGLLKIWAG 263
Query: 84 AMDL 87
+ D
Sbjct: 264 SRDR 267
>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 95
Score = 23.9 bits (52), Expect = 4.4
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 63 GKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECS 115
+ +DL+ T +G+G A L A EH I+P CS
Sbjct: 29 NGKVMDLVHTYVPSFKRGLGLASHLCVA-------AFEH-ASSHSISIIPSCS 73
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 295
Score = 23.8 bits (51), Expect = 9.6
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 1 MFNILRGGNSADTTPD 16
N+L GG+ A
Sbjct: 9 FLNVLNGGSHAGGALA 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 516,902
Number of extensions: 21832
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 21
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.7 bits)