BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12546
(765 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 43 LSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHD 102
L++ +G L+ N F+D L V ++ HK ILAARS F A+ + ES +N +E++D
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 220
Query: 103 TNIVAFKCLLKYIYSGKL-SFRNLKDDVI 130
FK ++ +IY+GK + + DD++
Sbjct: 221 VEPEVFKEMMCFIYTGKAPNLDKMADDLL 249
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A+ + ES +N +E++D FK ++ +IY+GK NL D + D+L + KY
Sbjct: 200 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP--NL-DKMADDLLAAADKYA 256
Query: 208 FQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQII 259
+ L+ D L L+V NA I A + QL + FI+Y+A ++
Sbjct: 257 LERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVL 308
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 43 LSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHD 102
L++ +G L+ N F+D L V ++ HK ILAARS F A+ + ES +N +E++D
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 71
Query: 103 TNIVAFKCLLKYIYSGKL-SFRNLKDDVI 130
FK ++ +IY+GK + + DD++
Sbjct: 72 VEPEVFKEMMCFIYTGKAPNLDKMADDLL 100
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A+ + ES +N +E++D FK ++ +IY+GK NL D + D+L + KY
Sbjct: 51 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP--NL-DKMADDLLAAADKYA 107
Query: 208 FQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQL 243
+ L+ D L L+V NA I A + QL
Sbjct: 108 LERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 43 LSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHD 102
L++ +G L+ N F+D L V ++ HK ILAARS F A ES +N +E++D
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEIND 80
Query: 103 TNIVAFKCLLKYIYSGK 119
FK +IY+GK
Sbjct: 81 VEPEVFKEXXCFIYTGK 97
Score = 35.8 bits (81), Expect = 0.098, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 158 ESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISD 217
ES +N +E++D FK +IY+GK + D +L + KY + L+ D
Sbjct: 70 ESKKNRVEINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLA---AADKYALERLKVXCED 126
Query: 218 YLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQII 259
L L+V NA I A + QL + FI+Y+A ++
Sbjct: 127 ALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVL 168
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 68/264 (25%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
+H L + + F D L++ E+I V K ILAA S Y R
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRT------------- 59
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLC 157
KL++ KDD G+T
Sbjct: 60 ---------------------KLNYNPPKDD------------GSTY------------- 73
Query: 158 ESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISD 217
+IEL ++ + +L YI+SG++ L +D I D++ + DL+ +
Sbjct: 74 -----KIELEGISVXVXREILDYIFSGQI---RLNEDTIQDVVQAADLLLLTDLKTLCCE 125
Query: 218 YLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQ 277
+L + N I D A +Y L ++ + +++ + + + S F LS L ++I
Sbjct: 126 FLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVIS 185
Query: 278 RDSF-YAPEIDIFRAVVDWIKANS 300
+ E +F AV+ WI ++
Sbjct: 186 LEKLNVGNERYVFEAVIRWIAHDT 209
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQN- 96
+H L + + F D L++ E+I V K ILAA S Y R L + + +
Sbjct: 29 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 88
Query: 97 -EIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
+IEL +++ + +L YI+SG++ L +D I D++
Sbjct: 89 YKIELEGISVMVMREILDYIFSGQI---RLNEDTIQDVV 124
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 68 ISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKD 127
+ HK +LA S F A YG L E ++EI + D AF LLKY YS ++ +L+
Sbjct: 24 VPAHKYVLAVGSSVFYAXFYGDLAEV-KSEIHIPDVEPAAFLILLKYXYSDEI---DLEA 79
Query: 128 DVILDIL 134
D +L L
Sbjct: 80 DTVLATL 86
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A YG L E ++EI + D AF LLKY YS ++ +L+ D +L L + KY
Sbjct: 38 FYAXFYGDLAEV-KSEIHIPDVEPAAFLILLKYXYSDEI---DLEADTVLATLYAAKKYI 93
Query: 208 FQDLENSISDYLRVIL 223
L + ++L L
Sbjct: 94 VPALAKACVNFLETSL 109
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 58 DTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYS 117
D V++V+ + H+ +LAA S+YF+ L G QN E+ + A L+ + Y+
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 96
Query: 118 GKLS 121
L+
Sbjct: 97 ATLT 100
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQN- 96
+H L + + F D L++ E+I V K ILAA S Y R L + + +
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 72
Query: 97 -EIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
+IEL ++ + +L YI+SG++ L +D I D++
Sbjct: 73 YKIELEGISVXVXREILDYIFSGQI---RLNEDTIQDVV 108
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 58 DTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYS 117
D V++V+ + H+ +LAA S+YF+ L G QN E+ + A L+ + Y+
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 86
Query: 118 GKLS 121
L+
Sbjct: 87 ATLT 90
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
+H Q + E + D +V HK +LAA SEYF+ L ++
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV-----DQKDV 63
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDI 133
+ L +N +L+++Y+ KLS D +L +
Sbjct: 64 VHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAV 99
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
+H Q + E + D +V HK +LAA SEYF+ L ++
Sbjct: 7 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV-----DQKDV 61
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDI 133
+ L +N +L+++Y+ KLS D +L +
Sbjct: 62 VHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAV 97
>pdb|3L2N|A Chain A, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
pdb|3L2N|B Chain B, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
Length = 395
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 687 DLCRSWQSISFSRRPVVFVRIIGTHNTMNEVFHCVHFE-------------CPDQSIKLP 733
+L R WQ+ S R P V+ + H T ++F+ VH + P+ S KL
Sbjct: 243 NLNREWQTPSLERSPEVYYVVNKXHETGVDLFYDVHGDEGLPYVFLAGCEGIPNYSDKLA 302
Query: 734 SAGQPSPSCLSVVTAQFQ 751
S Q + LS+ +A FQ
Sbjct: 303 SLQQDFVAALSLASADFQ 320
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 53 NDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIEL---HDTNIVAFK 109
D D LIV+ ++ H+ +LAA SEYF L G +N++ + + F
Sbjct: 29 KDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVG----QTKNDLVVSLPEEVTARGFG 84
Query: 110 CLLKYIYSGKL 120
LL++ Y+ KL
Sbjct: 85 PLLQFAYTAKL 95
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 45 EMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIEL-HDT 103
E + L + D ++V+ H+ +LAA S YFR L S +EL
Sbjct: 22 ECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAV 77
Query: 104 NIVAFKCLLKYIYSGKLSFRNLKDDVILDILG 135
+F+ +L + Y+G+LS D+++ G
Sbjct: 78 QPQSFQQILSFCYTGRLSMNVGDQDLLMYTAG 109
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 56 FSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYI 115
F D +IV++ K HK IL+A S YF L +EL F +L YI
Sbjct: 33 FCDVTVIVEDRKFRAHKNILSASSTYFHQLF-----SVAGQVVELSFIRAEIFAEILNYI 87
Query: 116 YSGKL 120
YS K+
Sbjct: 88 YSSKI 92
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 56 FSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYI 115
F D +IV++ K HK IL+A S YF L +EL F +L YI
Sbjct: 31 FCDVTVIVEDRKFRAHKNILSASSTYFHQLF-----SVAGQVVELSFIRAEIFAEILNYI 85
Query: 116 YSGKL 120
YS K+
Sbjct: 86 YSSKI 90
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 18/90 (20%)
Query: 50 LYLNDE-----FSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIEL---- 100
L LND+ D ++V+ ++ H+ +LAA S YF + + G Q + EL
Sbjct: 25 LSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG------QTDAELTVTL 78
Query: 101 -HDTNIVAFKCLLKYIYSGKLSFRNLKDDV 129
+ + F+ L+++ Y+ KL KD+V
Sbjct: 79 PEEVTVKGFEPLIQFAYTAKLILS--KDNV 106
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 50 LYLNDE-----FSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTN 104
L LND+ D + V+ ++ H+ +LAA S YF + + G + N +
Sbjct: 18 LSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQ-ADGELNITLPEEVT 76
Query: 105 IVAFKCLLKYIYSGKL 120
+ F+ L+++ Y+ KL
Sbjct: 77 VKGFEPLIQFAYTAKL 92
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 67 KISVHKVILAARSEYFRALLYGGLCESNQNEIELHD------TNIVAFKCLLKYIYSGKL 120
+ H+ +LAA +EYF LL G ES +E+ + +++Y+Y+G++
Sbjct: 64 EFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI 123
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 39 HVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEI 98
H + L E + D +++ + H+ +LA+ SEYF A+ +++N +
Sbjct: 5 HCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS----TSENNV 60
Query: 99 ELHDTNIVA--FKCLLKYIYSGKLS 121
L + + A F+ LL++IY+G L+
Sbjct: 61 FLDQSQVKADGFQKLLEFIYTGTLN 85
>pdb|3ELQ|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase
pdb|3ELQ|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase
Length = 571
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 431 RGYLKPEENLATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHT--ITEATSSTSCDN 488
+G+ KP LA+ + + G+ NG N D + YT+HT I+ + T DN
Sbjct: 395 KGWEKP---LASKLLKPVDANGKPITCNENGLCENSDFDFTYTQHTAWISSKGTLTIFDN 451
Query: 489 GILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWT--RVIDYTRFYCRSWQFLY 546
G L A+ YS F+E ID+KK T +V +Y + R + F
Sbjct: 452 GDGRHLEQPALPT-----------MKYSRFVEYKIDEKKGTVQQVWEYGK--ERGYDFYS 498
Query: 547 FPTQVVQY 554
T +++Y
Sbjct: 499 PITSIIEY 506
>pdb|3KG8|A Chain A, Dehydratase Domain From Curj Module Of Curacin Polyketide
Synthase
pdb|3KG8|B Chain B, Dehydratase Domain From Curj Module Of Curacin Polyketide
Synthase
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 543 QFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIP--------KH 594
Q L P Q V+ ++VV T + F ++SF+ +Q Q+S G I K
Sbjct: 80 QALAIPEQGVRTVQVVLTPQNNSFSFQVISFDDSLESQINQVSNNGSHISDWAVHATGKL 139
Query: 595 NVATRELSAKVVEGVSRSLSSLIDGNTV-KYDWDSGYTCHQ---------LGSGAILVQL 644
+VA E S +E + S ID + ++ WD Q LG G +L Q+
Sbjct: 140 SVANAEQSLIPLEEIQARCSQKIDSAEIYQHLWDRQIHLGQSFRWIEQVWLGEGEVLCQM 199
Query: 645 GQP 647
P
Sbjct: 200 KVP 202
>pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
Length = 737
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 21/111 (18%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ ++ ++ N+V +++ E + +T+ SE+G
Sbjct: 170 KGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDG----------- 218
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWD----SGYTCHQLGSGAILVQLGQ 646
L + + G S LI G T + D + TC +G GA LV+LGQ
Sbjct: 219 -LGVECIRG-----SGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQ 263
>pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
Length = 764
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ ++ ++ N+V +++ E + +T+ SE+G+ V
Sbjct: 176 KGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGL-----GVECL 230
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQ 646
S + SR+ + V TC +G GA LV+LGQ
Sbjct: 231 RGSGLIAGATSRAYHDIFTITLV--------TCRSVGIGAYLVRLGQ 269
>pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|3K8X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
Length = 758
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ ++ ++ N+V +++ E + +T+ SE+G+ V
Sbjct: 176 KGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGL-----GVECL 230
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQ 646
S + SR+ + V TC +G GA LV+LGQ
Sbjct: 231 RGSGLIAGATSRAYHDIFTITLV--------TCRSVGIGAYLVRLGQ 269
>pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0S|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0Q|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
Length = 769
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ ++ ++ N+V +++ E + +T+ SE+G+ V
Sbjct: 179 KGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGL-----GVECL 233
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQ 646
S + SR+ + V TC +G GA LV+LGQ
Sbjct: 234 RGSGLIAGATSRAYHDIFTITLV--------TCRSVGIGAYLVRLGQ 272
>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYR|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYT|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 737
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ ++ ++ N+V +++ E + +T+ SE+G+ V
Sbjct: 170 KGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGL-----GVECL 224
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQ 646
S + SR+ + V TC +G GA LV+LGQ
Sbjct: 225 RGSGLIAGATSRAYHDIFTITLV--------TCRSVGIGAYLVRLGQ 263
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ ++ ++ N+V +++ E + +T+ SE+G+ V
Sbjct: 179 KGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGL-----GVECL 233
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQ 646
S + SR+ + V TC +G GA LV+LGQ
Sbjct: 234 RGSGLIAGATSRAYHDIFTITLV--------TCRSVGIGAYLVRLGQ 272
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 330 SLDELLTTVRSSGIISADKILDAIELQTNDKVQYRANSPEVEEDGESSFRAPINMDEILT 389
S EL+ +R +GII DK+ + + D+ Y +P ++ F+A I+ +
Sbjct: 8 SHSELIHNLRKNGIIKTDKVFEV--MLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHA 65
Query: 390 YVRLPLISLDELLTTVRSSGIISADKILDA 419
Y L L+ D+L ++ + S IL A
Sbjct: 66 YA-LELL-FDQLHEGAKALDVGSGSGILTA 93
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 67 KISVHKVILAARSEYFRALLYGGLCESNQNEIELHD------TNIVAFKCLLKYIYSGKL 120
+ H+ +LAA +EYF LL G ES +E + +++Y Y+G++
Sbjct: 46 EFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRI 105
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
Length = 737
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ + ++ N+V +++ E + +T+ SE+G+ V
Sbjct: 170 KGFQYLYLTSEGXETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGL-----GVECL 224
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQ 646
S + SR+ + V TC +G GA LV+LGQ
Sbjct: 225 RGSGLIAGATSRAYHDIFTITLV--------TCRSVGIGAYLVRLGQ 263
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 805
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 540 RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATR 599
+ +Q+LY ++ + ++ N+V +++ E + +T+ SE+G+ V
Sbjct: 223 KGFQYLYLTSEGXETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGL-----GVECL 277
Query: 600 ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQ 646
S + SR+ + V TC +G GA LV+LGQ
Sbjct: 278 RGSGLIAGATSRAYHDIFTITLV--------TCRSVGIGAYLVRLGQ 316
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 199 ILGLSHKYGFQDL--ENSISDYLRVILTVHNACSIFDCAYYYDLKQLNK----IVLSF-- 250
+ G++ YGFQD+ + I Y R I Y D+ L VL F
Sbjct: 107 VRGVAEGYGFQDVVHQTDIVRYNRDIAPFSGLSDEQVMEYSRDIPDLTTKKFDAVLVFND 166
Query: 251 -IDYNAK-QIISENSFYNLSQNGLIQLIQRDSFYAPEIDIFRAVVDWIKANSPEVEEDGE 308
D+ A QIIS+ S+NG++ ++ + P I I+ + D + AN ++ G+
Sbjct: 167 PHDWAADIQIISDAIN---SENGMLNTLRNEKSGKPSIPIYFSNQDLLWANPYKLNRFGQ 223
Query: 309 SSFR 312
+FR
Sbjct: 224 GAFR 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,979,729
Number of Sequences: 62578
Number of extensions: 915490
Number of successful extensions: 2146
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2101
Number of HSP's gapped (non-prelim): 57
length of query: 765
length of database: 14,973,337
effective HSP length: 106
effective length of query: 659
effective length of database: 8,340,069
effective search space: 5496105471
effective search space used: 5496105471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)