Query psy12546
Match_columns 765
No_of_seqs 526 out of 2741
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:06:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4350|consensus 100.0 4E-142 9E-147 1085.1 36.1 549 33-731 21-569 (620)
2 KOG4441|consensus 100.0 4.8E-56 1E-60 509.4 45.2 524 32-732 12-549 (571)
3 KOG4350|consensus 100.0 1.8E-57 4E-62 464.6 16.6 360 143-744 65-434 (620)
4 PHA02713 hypothetical protein; 100.0 1.8E-54 3.9E-59 498.6 34.1 512 34-684 3-543 (557)
5 PHA03098 kelch-like protein; P 100.0 2.2E-48 4.8E-53 450.6 39.4 505 53-694 6-530 (534)
6 PHA02790 Kelch-like protein; P 100.0 6.1E-47 1.3E-51 430.2 35.5 437 43-654 9-456 (480)
7 PHA02713 hypothetical protein; 100.0 2.2E-35 4.8E-40 340.3 22.9 456 143-731 47-535 (557)
8 KOG4441|consensus 100.0 9.8E-29 2.1E-33 284.0 15.6 447 129-732 39-502 (571)
9 KOG2075|consensus 99.9 4.9E-26 1.1E-30 240.7 25.0 244 40-353 98-349 (521)
10 PHA03098 kelch-like protein; P 99.9 2E-25 4.4E-30 258.8 23.1 424 143-685 32-475 (534)
11 PHA02790 Kelch-like protein; P 99.9 1.3E-24 2.7E-29 247.5 15.5 393 131-685 26-434 (480)
12 KOG0783|consensus 99.9 1.7E-22 3.6E-27 223.3 14.4 237 39-275 537-867 (1267)
13 KOG4591|consensus 99.8 5.4E-18 1.2E-22 159.9 13.1 176 37-283 47-225 (280)
14 KOG4682|consensus 99.7 6.1E-17 1.3E-21 168.0 13.5 184 46-299 59-248 (488)
15 PF00651 BTB: BTB/POZ domain; 99.7 1.8E-16 3.9E-21 143.9 12.2 108 47-222 1-110 (111)
16 smart00225 BTB Broad-Complex, 99.5 2.3E-13 5E-18 117.4 9.9 90 58-216 1-90 (90)
17 PF07707 BACK: BTB And C-termi 99.4 6.4E-14 1.4E-18 125.4 3.9 102 228-339 1-103 (103)
18 TIGR03547 muta_rot_YjhT mutatr 99.3 2.1E-11 4.6E-16 133.8 13.6 206 440-654 59-331 (346)
19 smart00875 BACK BTB And C-term 99.3 7.5E-12 1.6E-16 111.2 7.0 98 228-336 1-99 (101)
20 KOG2838|consensus 99.2 2.2E-11 4.8E-16 120.7 9.0 209 38-255 112-388 (401)
21 TIGR03548 mutarot_permut cycli 99.2 1.3E-10 2.8E-15 126.3 12.1 193 442-653 70-312 (323)
22 KOG0511|consensus 99.1 1.3E-10 2.8E-15 120.3 7.6 226 42-272 132-447 (516)
23 TIGR03547 muta_rot_YjhT mutatr 99.1 1.4E-09 3E-14 119.4 14.9 201 442-654 15-267 (346)
24 PRK14131 N-acetylneuraminic ac 99.0 1.7E-09 3.7E-14 120.0 13.6 206 440-654 80-353 (376)
25 PLN02153 epithiospecifier prot 99.0 6.3E-09 1.4E-13 114.0 16.8 232 443-693 31-304 (341)
26 PLN02193 nitrile-specifier pro 99.0 1.3E-08 2.9E-13 116.1 19.9 264 442-718 173-459 (470)
27 PLN02153 epithiospecifier prot 99.0 3.8E-09 8.2E-14 115.7 13.9 204 443-653 84-323 (341)
28 KOG2075|consensus 98.9 6.1E-09 1.3E-13 111.8 12.4 207 143-420 140-349 (521)
29 PRK14131 N-acetylneuraminic ac 98.9 4.7E-09 1E-13 116.5 11.3 146 460-611 188-354 (376)
30 TIGR03548 mutarot_permut cycli 98.9 2.2E-08 4.9E-13 108.8 15.2 197 441-654 10-233 (323)
31 PF00754 F5_F8_type_C: F5/8 ty 98.9 1.7E-08 3.8E-13 93.4 10.9 106 613-722 17-128 (129)
32 cd00057 FA58C Substituted upda 98.8 5.7E-08 1.2E-12 92.2 12.0 108 611-727 24-143 (143)
33 KOG0783|consensus 98.7 1.1E-08 2.4E-13 115.1 5.9 133 55-224 709-848 (1267)
34 PLN02193 nitrile-specifier pro 98.6 1.4E-07 3E-12 107.7 11.1 151 443-610 227-387 (470)
35 smart00612 Kelch Kelch domain. 98.0 7.3E-06 1.6E-10 61.4 4.7 46 447-495 2-47 (47)
36 KOG4693|consensus 98.0 4.5E-05 9.8E-10 76.6 11.3 196 446-653 90-311 (392)
37 KOG4682|consensus 98.0 1.9E-05 4.2E-10 83.4 9.0 253 106-420 50-326 (488)
38 PF01344 Kelch_1: Kelch motif; 97.8 4.9E-05 1.1E-09 57.2 5.6 46 484-535 1-47 (47)
39 smart00231 FA58C Coagulation f 97.7 0.00031 6.8E-09 66.4 10.9 105 615-727 26-138 (139)
40 KOG2716|consensus 97.7 0.00032 7E-09 70.7 10.6 96 59-222 7-104 (230)
41 KOG0379|consensus 97.6 0.0021 4.5E-08 73.6 18.3 255 444-714 70-344 (482)
42 PF13964 Kelch_6: Kelch motif 97.6 9.7E-05 2.1E-09 56.5 5.0 48 484-537 1-49 (50)
43 PF00651 BTB: BTB/POZ domain; 97.6 0.00014 3.1E-09 65.4 6.4 77 143-254 32-110 (111)
44 PF13964 Kelch_6: Kelch motif 97.6 7.9E-05 1.7E-09 57.0 3.8 42 442-485 9-50 (50)
45 smart00607 FTP eel-Fucolectin 97.4 0.0017 3.7E-08 61.9 12.0 132 594-729 2-148 (151)
46 PF13415 Kelch_3: Galactose ox 97.3 0.00035 7.5E-09 53.2 4.4 45 446-492 3-48 (49)
47 KOG1230|consensus 97.3 0.0069 1.5E-07 64.9 15.4 239 442-689 76-355 (521)
48 PF02214 BTB_2: BTB/POZ domain 97.2 0.00082 1.8E-08 58.9 6.5 59 59-118 1-63 (94)
49 PF01344 Kelch_1: Kelch motif; 97.1 0.00031 6.7E-09 52.8 2.3 38 441-478 8-45 (47)
50 KOG0511|consensus 97.1 0.0013 2.8E-08 69.3 7.0 57 66-123 301-361 (516)
51 PF07646 Kelch_2: Kelch motif; 97.0 0.00098 2.1E-08 50.7 4.6 47 484-534 1-48 (49)
52 smart00225 BTB Broad-Complex, 97.0 0.00084 1.8E-08 57.1 4.7 70 143-247 20-89 (90)
53 KOG2838|consensus 97.0 0.00043 9.3E-09 69.7 2.6 149 41-230 220-395 (401)
54 KOG0379|consensus 96.9 0.0055 1.2E-07 70.2 11.4 83 445-533 123-207 (482)
55 PF07707 BACK: BTB And C-termi 96.8 0.00038 8.3E-09 61.8 0.5 86 287-405 15-102 (103)
56 KOG1987|consensus 96.7 0.00081 1.7E-08 72.2 2.7 120 65-253 109-231 (297)
57 PF11822 DUF3342: Domain of un 96.5 0.0054 1.2E-07 64.6 6.5 54 222-275 71-125 (317)
58 KOG1230|consensus 96.3 0.02 4.3E-07 61.6 9.5 115 441-563 129-253 (521)
59 PF13418 Kelch_4: Galactose ox 96.0 0.0093 2E-07 45.1 4.2 47 484-535 1-48 (49)
60 smart00875 BACK BTB And C-term 95.7 0.005 1.1E-07 54.1 1.6 83 287-403 15-99 (101)
61 cd00057 FA58C Substituted upda 95.7 0.1 2.2E-06 49.1 10.6 86 488-576 46-142 (143)
62 PF00754 F5_F8_type_C: F5/8 ty 95.6 0.17 3.7E-06 46.2 11.8 87 486-572 36-128 (129)
63 KOG4693|consensus 95.5 0.082 1.8E-06 53.8 9.6 89 447-539 194-291 (392)
64 PF13418 Kelch_4: Galactose ox 95.3 0.013 2.8E-07 44.3 2.6 33 445-477 13-45 (49)
65 KOG1724|consensus 95.3 0.24 5.2E-06 47.7 11.6 117 64-228 13-132 (162)
66 smart00512 Skp1 Found in Skp1 95.1 0.12 2.6E-06 46.1 8.4 60 59-119 4-65 (104)
67 PF07646 Kelch_2: Kelch motif; 95.0 0.027 6E-07 42.6 3.6 37 442-478 9-47 (49)
68 KOG3473|consensus 95.0 0.17 3.6E-06 43.4 8.2 56 59-115 19-77 (112)
69 PF13854 Kelch_5: Kelch motif 94.6 0.031 6.7E-07 40.9 2.8 24 481-504 1-24 (42)
70 PLN02772 guanylate kinase 94.6 0.06 1.3E-06 59.1 6.0 58 445-503 35-95 (398)
71 KOG2714|consensus 94.4 0.15 3.3E-06 55.3 8.6 64 59-123 13-80 (465)
72 PF03931 Skp1_POZ: Skp1 family 94.4 0.25 5.5E-06 39.5 7.8 56 59-117 3-59 (62)
73 KOG4276|consensus 93.5 0.59 1.3E-05 40.1 8.5 88 639-727 9-110 (113)
74 PF13163 DUF3999: Protein of u 92.9 1.4 3.1E-05 49.7 13.4 164 507-711 133-315 (429)
75 cd08366 APC10 APC10 subunit of 92.2 0.91 2E-05 42.7 8.9 94 614-712 21-123 (139)
76 PF07738 Sad1_UNC: Sad1 / UNC- 91.7 1.4 3.1E-05 41.1 9.9 90 638-727 32-133 (135)
77 KOG1665|consensus 91.0 0.98 2.1E-05 44.9 8.0 91 58-217 10-105 (302)
78 KOG4152|consensus 90.2 0.68 1.5E-05 51.3 6.7 56 447-504 218-274 (830)
79 COG3055 Uncharacterized protei 87.9 0.54 1.2E-05 50.2 3.9 60 445-505 93-157 (381)
80 smart00612 Kelch Kelch domain. 87.8 0.59 1.3E-05 34.2 3.1 38 496-540 1-39 (47)
81 PF13415 Kelch_3: Galactose ox 87.7 0.88 1.9E-05 34.3 4.1 42 494-539 1-42 (49)
82 COG5201 SKP1 SCF ubiquitin lig 87.4 7.8 0.00017 35.3 10.3 120 59-227 4-126 (158)
83 PF01466 Skp1: Skp1 family, di 86.6 1.7 3.7E-05 36.5 5.6 38 192-229 12-49 (78)
84 smart00231 FA58C Coagulation f 83.8 9.9 0.00021 35.5 10.1 83 490-576 47-137 (139)
85 PF07250 Glyoxal_oxid_N: Glyox 82.9 3 6.5E-05 43.1 6.5 55 446-504 79-138 (243)
86 PF06588 Muskelin_N: Muskelin 82.1 7 0.00015 38.6 8.3 106 620-731 31-150 (199)
87 KOG1778|consensus 81.9 0.69 1.5E-05 49.6 1.5 134 60-261 30-164 (319)
88 KOG2716|consensus 81.1 3.8 8.2E-05 41.8 6.3 78 144-254 26-104 (230)
89 PF13163 DUF3999: Protein of u 78.6 6.6 0.00014 44.4 8.0 69 640-709 116-194 (429)
90 smart00512 Skp1 Found in Skp1 74.4 11 0.00024 33.3 6.8 42 144-185 23-65 (104)
91 cd08159 APC10-like APC10-like 73.9 30 0.00065 32.1 9.5 101 614-719 17-124 (129)
92 KOG2715|consensus 73.6 12 0.00025 35.8 6.8 66 58-123 22-91 (210)
93 TIGR02961 allantoicase allanto 70.5 76 0.0017 34.1 12.8 171 525-713 110-312 (322)
94 KOG3473|consensus 68.3 11 0.00025 32.6 5.0 64 144-207 38-111 (112)
95 KOG1724|consensus 68.1 21 0.00045 34.5 7.4 101 145-255 27-127 (162)
96 KOG4152|consensus 67.8 5.3 0.00012 44.6 3.7 200 448-657 46-277 (830)
97 KOG2437|consensus 67.8 7.7 0.00017 43.4 4.9 79 446-532 326-420 (723)
98 PF03256 APC10: Anaphase-promo 66.2 19 0.00042 35.9 7.0 108 615-728 50-169 (193)
99 KOG2437|consensus 65.9 8.4 0.00018 43.1 4.7 134 446-584 274-418 (723)
100 PF03089 RAG2: Recombination a 62.9 1.5E+02 0.0033 31.3 12.7 60 463-526 133-194 (337)
101 PF03931 Skp1_POZ: Skp1 family 61.7 11 0.00023 30.1 3.5 38 144-183 22-59 (62)
102 PF02214 BTB_2: BTB/POZ domain 57.3 9.5 0.0002 33.0 2.8 67 146-215 23-94 (94)
103 PRK13797 putative bifunctional 57.2 2.4E+02 0.0053 32.6 14.5 123 594-723 185-332 (516)
104 PF13854 Kelch_5: Kelch motif 56.3 11 0.00023 27.4 2.4 26 445-470 15-41 (42)
105 COG3055 Uncharacterized protei 51.5 27 0.00059 37.8 5.4 77 460-541 195-272 (381)
106 cd08667 APC10-ZZEF1 APC10/DOC1 50.1 2E+02 0.0043 26.8 10.2 101 614-719 17-125 (131)
107 TIGR01640 F_box_assoc_1 F-box 49.4 1.5E+02 0.0032 30.1 10.6 113 461-583 70-182 (230)
108 cd08665 APC10-CUL7 APC10-like 45.9 2.5E+02 0.0055 26.1 10.2 93 614-711 17-114 (131)
109 cd08365 APC10-like1 APC10-like 42.5 2.1E+02 0.0047 26.6 9.2 101 614-719 18-126 (131)
110 TIGR02961 allantoicase allanto 39.9 3.4E+02 0.0073 29.4 11.4 80 636-720 60-156 (322)
111 PF03561 Allantoicase: Allanto 39.8 89 0.0019 29.9 6.5 74 636-713 50-143 (152)
112 PRK13257 allantoicase; Provisi 38.4 2.1E+02 0.0045 31.1 9.7 82 636-722 75-170 (336)
113 PF14652 DUF4457: Domain of un 38.0 99 0.0022 33.7 7.4 66 593-660 224-299 (329)
114 KOG3840|consensus 34.7 1.8E+02 0.0039 30.8 8.1 65 56-120 95-164 (438)
115 cd08666 APC10-HECTD3 APC10-lik 34.1 4E+02 0.0086 25.0 9.9 100 614-719 22-129 (134)
116 KOG2723|consensus 33.4 1.2E+02 0.0025 31.0 6.5 65 55-120 6-74 (221)
117 PF03000 NPH3: NPH3 family; I 32.7 2.2E+02 0.0048 29.8 8.7 128 170-300 69-234 (258)
118 PF11822 DUF3342: Domain of un 29.9 32 0.00068 36.9 1.9 89 65-223 13-104 (317)
119 PF01466 Skp1: Skp1 family, di 29.8 99 0.0021 25.8 4.6 47 222-277 10-56 (78)
120 PF05096 Glu_cyclase_2: Glutam 29.1 5.3E+02 0.012 27.1 10.7 108 462-576 69-183 (264)
121 KOG0278|consensus 28.9 82 0.0018 32.5 4.5 51 444-506 235-290 (334)
122 PF12768 Rax2: Cortical protei 25.2 8.4E+02 0.018 25.9 17.6 90 461-560 16-109 (281)
123 PRK13257 allantoicase; Provisi 25.1 9.2E+02 0.02 26.3 15.3 171 526-714 123-324 (336)
124 PF03404 Mo-co_dimer: Mo-co ox 24.7 2.1E+02 0.0045 26.6 6.2 55 640-698 20-83 (131)
125 PF01108 Tissue_fac: Tissue fa 24.5 1.1E+02 0.0024 27.0 4.2 62 651-713 34-102 (107)
126 KOG2714|consensus 23.5 1.2E+02 0.0026 33.8 4.8 65 146-212 36-101 (465)
127 PLN02772 guanylate kinase 21.4 1.5E+02 0.0032 33.1 5.2 82 483-575 23-107 (398)
128 cd02114 bact_SorA_Moco sulfite 21.3 2.3E+02 0.005 31.4 6.7 53 641-698 270-323 (367)
129 KOG2445|consensus 21.2 1E+03 0.023 25.5 11.8 71 670-745 205-275 (361)
130 PF01834 XRCC1_N: XRCC1 N term 20.3 72 0.0016 30.4 2.1 95 607-712 15-137 (153)
131 PF03089 RAG2: Recombination a 20.3 4E+02 0.0086 28.3 7.6 108 447-567 40-179 (337)
No 1
>KOG4350|consensus
Probab=100.00 E-value=4.1e-142 Score=1085.14 Aligned_cols=549 Identities=51% Similarity=0.920 Sum_probs=523.7
Q ss_pred CCCccchHHHHHHHHHHHHcCCCCccEEEEECCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHH
Q psy12546 33 HSYEIEHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLL 112 (765)
Q Consensus 33 ~~~~~~~~~~l~~~l~~l~~~~~~sDv~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL 112 (765)
.....+....|++++..++.+++++||+|+|++++|||||.|||+||.|||+|++|||.|+.+..|.|++...++|
T Consensus 21 ~t~~~~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF---- 96 (620)
T KOG4350|consen 21 RTESAAISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAF---- 96 (620)
T ss_pred hhhhhhhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHH----
Confidence 3455667778899999999999999999999999999999999999999999999999999988999988888888
Q ss_pred HHHhcCCccccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCC
Q psy12546 113 KYIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLK 192 (765)
Q Consensus 113 ~ylYtg~l~~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~ 192 (765)
+.+|+|||||++.+++++
T Consensus 97 --------------------------------------------------------------~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 97 --------------------------------------------------------------RALLRYIYTGKIDLAGVE 114 (620)
T ss_pred --------------------------------------------------------------HHHHHHHhhcceecccch
Confidence 666666666667776778
Q ss_pred hhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHH
Q psy12546 193 DDVILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGL 272 (765)
Q Consensus 193 ~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l 272 (765)
++.++++|.+|++|++.+|+.++.+||+..|..+|+|.++.+|..|++++|...|+.|+.+|+.+++..+.|..|+.+.|
T Consensus 115 ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL 194 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSL 194 (620)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCCChhHHHHH
Q psy12546 273 IQLIQRDSFYAPEIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDA 352 (765)
Q Consensus 273 ~~ll~~d~l~v~E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~~~~~i~~a 352 (765)
.+++.+|.|.++|.+||.|+.+|.++|..+ ..+.+++.||+|+|+..+|+++|++++|++++.|++|
T Consensus 195 ~e~l~RDsFfApE~~IFlAv~~W~~~Nske-------------~~k~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDA 261 (620)
T KOG4350|consen 195 KELLARDSFFAPELKIFLAVRSWHQNNSKE-------------ASKVLLELVRLPLMTLTELLNVVRPSGLLSPDTILDA 261 (620)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHhcCchh-------------hHHHHHHHHhhhhccHHHHHhccCcccCcCHHHHHHH
Confidence 999999999999999999999999999532 6789999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCCcccccCCcccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCcCCCc
Q psy12546 353 IELQTNDKVQYRANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRG 432 (765)
Q Consensus 353 i~~~~~~~~~f~~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~~~~ 432 (765)
|..+.+.+ +.+|+|+
T Consensus 262 I~vrs~s~-----------------------------------------------------------------~~lpyRg 276 (620)
T KOG4350|consen 262 IEVRSQSP-----------------------------------------------------------------HELPYRG 276 (620)
T ss_pred HHhhccCc-----------------------------------------------------------------ccCCccc
Confidence 98554321 5799999
Q ss_pred cCCCCccccccCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCC
Q psy12546 433 YLKPEENLATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDL 512 (765)
Q Consensus 433 ~~~~~~~~a~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~ 512 (765)
++.|+.|+++...++.++.|+.++++++|++..||...|+.+|.+.+ -+..|+.+..|+.++|+.|++++||+|+
T Consensus 277 ~l~peeNia~~~~~aq~~~ge~r~alldgd~~~ydl~~gysRh~i~D-----~~~sgi~i~LG~p~iINhIrmllWdrds 351 (620)
T KOG4350|consen 277 CLSPEENIAPHYPHAQPLSGECRDALLDGDVTTYDLSNGYSRHCIND-----ENISGIQIDLGKPFIINHIRMLLWDRDS 351 (620)
T ss_pred ccCchhcccccccccccccchhhhhhccCCcceeecccCccccccCc-----ccceeEEEecCCchhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999998874 5778999999999999999999999999
Q ss_pred ceeeEEEEEEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeecccccccCCccccc
Q psy12546 513 RSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIP 592 (765)
Q Consensus 513 ~~y~y~v~vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p 592 (765)
++|+|+||||+|+.+|.+|+|++.|.||+||.+||++|+|||||+||++|++|..||.+.+|||+++++++++ .++++|
T Consensus 352 raysY~veVSmD~~hW~rV~DyS~Y~CRswQ~LyF~arvvR~Irlvgt~Ntvn~~fh~v~~EaMft~kt~~le-~~~ivP 430 (620)
T KOG4350|consen 352 RAYSYQVEVSMDDAHWNRVADYSEYDCRSWQRLYFTARVVRHIRLVGTNNTVNCKFHGVRIEAMFTTKTMPLE-HKVIVP 430 (620)
T ss_pred cceEEEEEEecchhhhHHhhhhhhhccccceeeeeecceeEEEEEEeeccceeeEEEEEEEEEEecccccccc-ceeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCcccccccceeEeecccccccccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCCCeeeEEEEEE
Q psy12546 593 KHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVS 672 (765)
Q Consensus 593 ~~nva~~~~~~~~~~g~~~~~~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~vs 672 (765)
..||||++++|.|++|+||+||||||||..+||||+||||||+|+|.|+|||||||+||+|||||||||+|+||||||||
T Consensus 431 ~~NvaTie~~A~V~eGVSR~RNALiNGD~~~YDWDsGYTCHQlGSG~IvvqLaQPY~igSmRlLLWdCDDR~YSyYvevS 510 (620)
T KOG4350|consen 431 HRNVATIENHARVVEGVSRCRNALINGDSSSYDWDSGYTCHQLGSGLIVVQLAQPYIIGSMRLLLWDCDDRFYSYYVEVS 510 (620)
T ss_pred ccchhhhhhhhHhhhhhhhhhhhhccCCcccccCcCCcchhhcCCceEEEEecCceeeeeeeEEEEecCCCceeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcceeeeeccCccccceEEEEeecCCEEEEEEEeccCCcceeEEEEeeeecCCCCC
Q psy12546 673 INLWDWEIVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNTMNEVFHCVHFECPDQSIK 731 (765)
Q Consensus 673 ~d~~~w~~v~~~~~~~~~~~~~~~f~~~~~~~ir~~~~~~~~~~~~~~~~~e~~~~~~~ 731 (765)
+|++.|++|+|+++..|+|||+++|+|+||+|||||||+|++|++|||||||||+|++.
T Consensus 511 tNq~eW~mvvDRtn~~c~sWQ~~~F~p~PvvyIRiVGTrNtaNEvFHcVHlEcP~q~~~ 569 (620)
T KOG4350|consen 511 TNQDEWVMVVDRTNEECHSWQELIFDPLPVVYIRIVGTRNTANEVFHCVHLECPSQVPI 569 (620)
T ss_pred eCchheEEeeecccccccchhheeecCCceEEEEEEeccccccceeEEEEeecCccChh
Confidence 99999999999999999999999999999999999999999999999999999999854
No 2
>KOG4441|consensus
Probab=100.00 E-value=4.8e-56 Score=509.37 Aligned_cols=524 Identities=20% Similarity=0.244 Sum_probs=415.8
Q ss_pred CCCCccchHHHHHHHHHHHHcCCCCccEEEEECCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHH
Q psy12546 32 NHSYEIEHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCL 111 (765)
Q Consensus 32 ~~~~~~~~~~~l~~~l~~l~~~~~~sDv~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~l 111 (765)
..+....|...+.+.|+.+++.+.+|||++.+++++|+|||.||||.||||++||+++++|+.+.+|.|.++++.++
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l--- 88 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETL--- 88 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHH---
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccC
Q psy12546 112 LKYIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNL 191 (765)
Q Consensus 112 L~ylYtg~l~~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~ 191 (765)
+.+++|+||+++.+
T Consensus 89 ---------------------------------------------------------------~~ll~y~Yt~~i~i--- 102 (571)
T KOG4441|consen 89 ---------------------------------------------------------------ELLLDYAYTGKLEI--- 102 (571)
T ss_pred ---------------------------------------------------------------HHHHHHhhcceEEe---
Confidence 66677777777766
Q ss_pred ChhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHH
Q psy12546 192 KDDVILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNG 271 (765)
Q Consensus 192 ~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~ 271 (765)
+.+++.+++.+|++||++++.+.|++||...|.++||+.+..+|+.|++.+|.+.+..|+.+||.++...++|+.|+.+.
T Consensus 103 ~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~ 182 (571)
T KOG4441|consen 103 SEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEE 182 (571)
T ss_pred chHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCC-HHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCCChh-HH
Q psy12546 272 LIQLIQRDSFYAP-EIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISAD-KI 349 (765)
Q Consensus 272 l~~ll~~d~l~v~-E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~~~~-~i 349 (765)
+..||++|.+++. |.++|+++++|++++.+.+. .++++++++||||+|++.+|.+.+...+++..+ .+
T Consensus 183 l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~----------~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c 252 (571)
T KOG4441|consen 183 LIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEERE----------EHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSAC 252 (571)
T ss_pred HHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHH----------HHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHH
Confidence 9999999999996 99999999999999977765 589999999999999999999999888877543 33
Q ss_pred HHHHHhhcccccccccCCCcccccCCcccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCcC
Q psy12546 350 LDAIELQTNDKVQYRANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQ 429 (765)
Q Consensus 350 ~~ai~~~~~~~~~f~~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~ 429 (765)
.+.+. ++.+ ++.+|
T Consensus 253 ~~~l~---------------------------------------------------------------ea~~---~~~~~ 266 (571)
T KOG4441|consen 253 RDLLD---------------------------------------------------------------EAKK---YHLLP 266 (571)
T ss_pred HHHHH---------------------------------------------------------------HHHH---HhhCc
Confidence 22222 1221 34444
Q ss_pred CCccCCCCccccccC---CcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeee
Q psy12546 430 YRGYLKPEENLATSK---MGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLL 506 (765)
Q Consensus 430 ~~~~~~~~~~~a~~~---~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~ 506 (765)
.+...++..+.++++ ..++++||..+.......+++|||.++.|.+..+ |+.+|.++|+++++|+||++||.+.
T Consensus 267 ~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~--m~~~r~~~~~~~~~~~lYv~GG~~~- 343 (571)
T KOG4441|consen 267 QRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP--MPSPRCRVGVAVLNGKLYVVGGYDS- 343 (571)
T ss_pred ccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCC--CCcccccccEEEECCEEEEEccccC-
Confidence 444334444444442 2378899999855556789999999999998776 9999999999999999999999752
Q ss_pred eecCCCceeeEEE-EEEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccc
Q psy12546 507 LWDKDLRSYSYFI-EVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQL 584 (765)
Q Consensus 507 ~~~~~~~~y~y~v-~vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~ 584 (765)
...+.-.+ .++++.++|+.+++|+..+|.. -.....+.||+|||+++.+. +.++|+|.+. +.|..
T Consensus 344 -----~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-----~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 344 -----GSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-----GVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTP 410 (571)
T ss_pred -----CCcccceEEEecCCCCceeccCCccCccccc-----eeEEECCEEEEEeccccccc---cccEEEecCCCCcccc
Confidence 11222223 3457888999999999998864 22334699999999998875 6799998775 55887
Q ss_pred cCCcccccCCcc--cccccceeEeeccccccc---ccccCCcccccCCCCCcccccCCc-cEEEecCCceeeccEEEEee
Q psy12546 585 SEEGIIIPKHNV--ATRELSAKVVEGVSRSLS---SLIDGNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMRLLLW 658 (765)
Q Consensus 585 ~~~~~~~p~~nv--a~~~~~~~~~~g~~~~~~---~~~~gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~~~~w 658 (765)
. .++..++..+ ++.++..|+++|.+.+.+ ...--|+.+..|....++.+.+.+ +..+..|.+|+|||-.-
T Consensus 411 v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~--- 486 (571)
T KOG4441|consen 411 V-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG--- 486 (571)
T ss_pred c-CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC---
Confidence 7 6777777654 555899999999876553 223338999999999999999887 69999999999999662
Q ss_pred ecCCCeeeEEEEE-EecCCcceeeeeccCccccceEEEEeecCCEEEEEEEeccCCcceeEEEEeeeecCCCCCC
Q psy12546 659 DCDDRSYSYLVDV-SINLWDWEIVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNTMNEVFHCVHFECPDQSIKL 732 (765)
Q Consensus 659 ~~~~~~y~y~i~v-s~d~~~w~~v~~~~~~~~~~~~~~~f~~~~~~~ir~~~~~~~~~~~~~~~~~e~~~~~~~~ 732 (765)
...-.+ ||. ......|++|++.+......+=.. -.-.-|+ +-| .++. --+-.+||+.+....
T Consensus 487 --~~~~~~--VE~ydp~~~~W~~v~~m~~~rs~~g~~~---~~~~ly~-vGG-~~~~---~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 487 --TSALSS--VERYDPETNQWTMVAPMTSPRSAVGVVV---LGGKLYA-VGG-FDGN---NNLNTVECYDPETDT 549 (571)
T ss_pred --CCccce--EEEEcCCCCceeEcccCccccccccEEE---ECCEEEE-Eec-ccCc---cccceeEEcCCCCCc
Confidence 111111 232 334669999986444333111111 1223444 444 4432 225588888655554
No 3
>KOG4350|consensus
Probab=100.00 E-value=1.8e-57 Score=464.59 Aligned_cols=360 Identities=31% Similarity=0.492 Sum_probs=302.6
Q ss_pred cchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhh
Q psy12546 143 TLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVI 222 (765)
Q Consensus 143 ~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~ 222 (765)
+.|.|||||+++||+|+.|..|+|++... ++ ...++.++|++... ...
T Consensus 65 aRs~yFRAlLYgGm~Es~q~~ipLq~t~~---eA----------------F~~lLrYiYtg~~~-------------l~~ 112 (620)
T KOG4350|consen 65 ARSSYFRALLYGGMQESHQQLIPLQETNS---EA----------------FRALLRYIYTGKID-------------LAG 112 (620)
T ss_pred HHHHHHHHHHhhhhhhhhhcccccccccH---HH----------------HHHHHHHHhhccee-------------ccc
Confidence 45999999999999999999999999887 66 77889999988211 223
Q ss_pred cChhhHHHHHHHHHHcCcHHHHHHHHHHHhc-----ccccccCccccccCCHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q psy12546 223 LTVHNACSIFDCAYYYDLKQLNKIVLSFIDY-----NAKQIISENSFYNLSQNGLIQLIQRDSFYAPEIDIFRAVVDWIK 297 (765)
Q Consensus 223 l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~-----n~~~v~~~~~f~~L~~~~l~~ll~~d~l~v~E~~l~~av~~Wi~ 297 (765)
+..+-.+++|.+|++|++.+|..+..+|++. |.+.++..+.|.+|+ +|...|+.++.
T Consensus 113 ~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~------------------~Lt~~C~mfmD 174 (620)
T KOG4350|consen 113 VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLT------------------DLTDYCMMFMD 174 (620)
T ss_pred chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcch------------------HHHHHHHHHHh
Confidence 4566778899999999999999999999985 666777777777776 89999999999
Q ss_pred hCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCCC-hhHHHHHHHhhcccccccccCCCcccccCCc
Q psy12546 298 ANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIIS-ADKILDAIELQTNDKVQYRANSPEVEEDGES 376 (765)
Q Consensus 298 ~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~~-~~~i~~ai~~~~~~~~~f~~~~~~~~~~~~~ 376 (765)
.|..+. |..--|..+|.+.|.+++..+.+.. +-+|+-|+..|.+.+ +
T Consensus 175 rnA~~l-----------------L~~~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~N-------------s-- 222 (620)
T KOG4350|consen 175 RNADQL-----------------LEDPSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNN-------------S-- 222 (620)
T ss_pred cCHHhh-----------------hcCcchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcC-------------c--
Confidence 985544 4555555689999999998888865 458988888654322 1
Q ss_pred ccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCcCCCccCCCCccccccCCcEEEEeeccCC
Q psy12546 377 SFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRGYLKPEENLATSKMGTMVMQGEMKN 456 (765)
Q Consensus 377 ~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~~~~~~~~~~~~a~~~~~~~viGG~~~~ 456 (765)
++....+++.||+|+|+...|+++|++.++++++.+++|++.+.
T Consensus 223 ----ke~~k~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDAI~vrs-------------------------------- 266 (620)
T KOG4350|consen 223 ----KEASKVLLELVRLPLMTLTELLNVVRPSGLLSPDTILDAIEVRS-------------------------------- 266 (620)
T ss_pred ----hhhHHHHHHHHhhhhccHHHHHhccCcccCcCHHHHHHHHHhhc--------------------------------
Confidence 13678899999999999999999999999999999999995210
Q ss_pred ccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEEEEecCCCeEEEecccc
Q psy12546 457 ALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYTR 536 (765)
Q Consensus 457 ~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~~ 536 (765)
+-
T Consensus 267 -------------------~s----------------------------------------------------------- 268 (620)
T KOG4350|consen 267 -------------------QS----------------------------------------------------------- 268 (620)
T ss_pred -------------------cC-----------------------------------------------------------
Confidence 00
Q ss_pred cccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeecccccccCCcccccCCcccccccceeEeeccccccccc
Q psy12546 537 FYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSL 616 (765)
Q Consensus 537 ~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~nva~~~~~~~~~~g~~~~~~~~ 616 (765)
+. .+.++|+..|.+|||+...+|+++.|..+ .||
T Consensus 269 ------------------------------------------~~--~lpyRg~l~peeNia~~~~~aq~~~ge~r--~al 302 (620)
T KOG4350|consen 269 ------------------------------------------PH--ELPYRGCLSPEENIAPHYPHAQPLSGECR--DAL 302 (620)
T ss_pred ------------------------------------------cc--cCCcccccCchhcccccccccccccchhh--hhh
Confidence 00 12336788899999999999999999966 999
Q ss_pred ccCCcccccCCCCCcccccCCc---cEEEecCCceeeccEEEEeeecCCCeeeEEEEEEecCCcceeeeeccCccccceE
Q psy12546 617 IDGNTVKYDWDSGYTCHQLGSG---AILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSINLWDWEIVADHTRDLCRSWQ 693 (765)
Q Consensus 617 ~~gd~~~~~w~~g~~~~~~~~~---~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~vs~d~~~w~~v~~~~~~~~~~~~ 693 (765)
||||+.+||.+.||+.|.+.+. +|.|+||||++||+||+|+||+|.|+|||+||||+|+.+|.+|+|++.++|||||
T Consensus 303 ldgd~~~ydl~~gysRh~i~D~~~sgi~i~LG~p~iINhIrmllWdrdsraysY~veVSmD~~hW~rV~DyS~Y~CRswQ 382 (620)
T KOG4350|consen 303 LDGDVTTYDLSNGYSRHCINDENISGIQIDLGKPFIINHIRMLLWDRDSRAYSYQVEVSMDDAHWNRVADYSEYDCRSWQ 382 (620)
T ss_pred ccCCcceeecccCccccccCcccceeEEEecCCchhhhhhhhhhhcccccceEEEEEEecchhhhHHhhhhhhhccccce
Confidence 9999999999999999988655 7999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCEEEEEEEeccCCcceeEEEEeeeecCCCCCC-CCCCCCCCcccc
Q psy12546 694 SISFSRRPVVFVRIIGTHNTMNEVFHCVHFECPDQSIKL-PSAGQPSPSCLS 744 (765)
Q Consensus 694 ~~~f~~~~~~~ir~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~ 744 (765)
.++|++|||||||+|||+|++|.+||.|.||||...... ...+.-+|--++
T Consensus 383 ~LyF~arvvR~Irlvgt~Ntvn~~fh~v~~EaMft~kt~~le~~~ivP~~Nv 434 (620)
T KOG4350|consen 383 RLYFTARVVRHIRLVGTNNTVNCKFHGVRIEAMFTTKTMPLEHKVIVPHRNV 434 (620)
T ss_pred eeeeecceeEEEEEEeeccceeeEEEEEEEEEEeccccccccceeeccccch
Confidence 999999999999999999999999999999999875543 334444554444
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-54 Score=498.55 Aligned_cols=512 Identities=15% Similarity=0.169 Sum_probs=370.5
Q ss_pred CCccchHHHHHHHHHHHHcCCCCccEEEEEC-CEEEEeehhHHHhcCHHHHHHhcCCccCCC-CeeEEecCCCHHHHHHH
Q psy12546 34 SYEIEHVQFLSEMIGNLYLNDEFSDTVLIVQ-NEKISVHKVILAARSEYFRALLYGGLCESN-QNEIELHDTNIVAFKCL 111 (765)
Q Consensus 34 ~~~~~~~~~l~~~l~~l~~~~~~sDv~~~v~-~~~~~aHr~ILaarS~yF~~lf~~~~~es~-~~~I~l~~v~~~~f~~l 111 (765)
..+..|...+++.|++|++++.+|||+|.|+ |++|+|||.|||++|+||++||+++|+|+. +.+|.|+++++++|+.
T Consensus 3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~- 81 (557)
T PHA02713 3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKN- 81 (557)
T ss_pred cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHH-
Confidence 4567899999999999999999999999997 899999999999999999999999999864 7889999999999944
Q ss_pred HHHHhcCCccccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccC
Q psy12546 112 LKYIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNL 191 (765)
Q Consensus 112 L~ylYtg~l~~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~ 191 (765)
+|+|+|||++
T Consensus 82 -----------------------------------------------------------------ll~y~Yt~~i----- 91 (557)
T PHA02713 82 -----------------------------------------------------------------IVQYLYNRHI----- 91 (557)
T ss_pred -----------------------------------------------------------------HHHHhcCCCC-----
Confidence 4555555432
Q ss_pred ChhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHH
Q psy12546 192 KDDVILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNG 271 (765)
Q Consensus 192 ~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~ 271 (765)
+.+++.++|.+|++|+++.|+++|++||...|+++||+.++..|..+.+..|.+.|.+|+.+||.++.+.++|+.|+.+.
T Consensus 92 ~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~ 171 (557)
T PHA02713 92 SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEI 171 (557)
T ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHH
Confidence 37899999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HHHHhccCC-CCCC-HHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCCCh-hH
Q psy12546 272 LIQLIQRDS-FYAP-EIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISA-DK 348 (765)
Q Consensus 272 l~~ll~~d~-l~v~-E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~~~-~~ 348 (765)
|.+||++|. +++. |+++|+++++|++++...+. ...++|++||||+|++..+. .+..++++.. ..
T Consensus 172 l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~-----------~~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~ 239 (557)
T PHA02713 172 LFDIISTNDNVYLYREGYKVTILLKWLEYNYITEE-----------QLLCILSCIDIQNLDKKSRL-LLYSNKTINMYPS 239 (557)
T ss_pred HHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHH-----------HHhhhHhhhhHhhcchhhhh-hhcchHHHHhhHH
Confidence 999999987 7885 99999999999999965554 57799999999999998877 5555566543 33
Q ss_pred HHHHHHhhcccccccccCCCcccccCCcccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCc
Q psy12546 349 ILDAIELQTNDKVQYRANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKV 428 (765)
Q Consensus 349 i~~ai~~~~~~~~~f~~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l 428 (765)
+.+.+......+ ...+|. ..+..+.-. .......+. .++. ..-.|.....+
T Consensus 240 c~~~l~~a~~~~--------------~~~~r~-----~~l~~~~g~---~~~~~~~v~---~yd~----~~~~W~~l~~m 290 (557)
T PHA02713 240 CIQFLLDNKQNR--------------NIIPRQ-----LCLVCHDTK---YNVCNPCIL---VYNI----NTMEYSVISTI 290 (557)
T ss_pred HHHHHhhhhhhc--------------ccCCcc-----eEEEEecCc---cccCCCCEE---EEeC----CCCeEEECCCC
Confidence 333332110000 010111 001000000 000000000 0000 00123323344
Q ss_pred CCCccCCCCccccccCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeee
Q psy12546 429 QYRGYLKPEENLATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLW 508 (765)
Q Consensus 429 ~~~~~~~~~~~~a~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~ 508 (765)
|... ....++...+.+||+||.+......+++++|||.+|.|...++ |+.+|.++++++++|+||++||....
T Consensus 291 p~~r---~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~--m~~~R~~~~~~~~~g~IYviGG~~~~-- 363 (557)
T PHA02713 291 PNHI---INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP--MIKNRCRFSLAVIDDTIYAIGGQNGT-- 363 (557)
T ss_pred Cccc---cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC--CcchhhceeEEEECCEEEEECCcCCC--
Confidence 3321 1234555666799999986433335789999999999986654 99999999999999999999996422
Q ss_pred cCCCceeeEEEE-EEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcce---------------eEEEEE
Q psy12546 509 DKDLRSYSYFIE-VSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNK---------------VFHIVS 572 (765)
Q Consensus 509 ~~~~~~y~y~v~-vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~---------------~~~~~~ 572 (765)
.....|+ +++..+.|+.+++|...++.. -.....+.|+++||.++... ...+.+
T Consensus 364 -----~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-----~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (557)
T PHA02713 364 -----NVERTIECYTMGDDKWKMLPDMPIALSSY-----GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK 433 (557)
T ss_pred -----CCCceEEEEECCCCeEEECCCCCcccccc-----cEEEECCEEEEEeCCCcccccccccccccccccccccccce
Confidence 1122344 457788999999999876643 11223589999999875321 112467
Q ss_pred EEEEeec-ccccccCCcccccCCc--ccccccceeEeecccccc---cccccCCccc-ccCCCCCcccccCCc-cEEEec
Q psy12546 573 FEIMYTA-QTVQLSEEGIIIPKHN--VATRELSAKVVEGVSRSL---SSLIDGNTVK-YDWDSGYTCHQLGSG-AILVQL 644 (765)
Q Consensus 573 ~e~~~~~-~~~~~~~~~~~~p~~n--va~~~~~~~~~~g~~~~~---~~~~~gd~~~-~~w~~g~~~~~~~~~-~i~v~l 644 (765)
+|+|.+. +.|+.. .++..|+.+ +|++.++.||++|..... +...--|+.+ ..|+...+++..+.+ ++++-.
T Consensus 434 ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 434 VIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred EEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence 9998764 568866 567677654 566689999999964321 1222337777 589999998877766 688899
Q ss_pred CCceeeccEEEEeeecCCCeeeEEEEEEecCCcceeeeec
Q psy12546 645 GQPYMLDSMRLLLWDCDDRSYSYLVDVSINLWDWEIVADH 684 (765)
Q Consensus 645 ~~~y~i~~~~~~~w~~~~~~y~y~i~vs~d~~~w~~v~~~ 684 (765)
|++|+|||-. ......-|. .....|+.++..
T Consensus 513 ~~iyv~Gg~~-----~~~~~e~yd----~~~~~W~~~~~~ 543 (557)
T PHA02713 513 NTIMMLHCYE-----SYMLQDTFN----VYTYEWNHICHQ 543 (557)
T ss_pred CEEEEEeeec-----ceeehhhcC----cccccccchhhh
Confidence 9999999943 211111122 235678888763
No 5
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.2e-48 Score=450.57 Aligned_cols=505 Identities=17% Similarity=0.224 Sum_probs=352.0
Q ss_pred CCCCccEEEEE--CCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHH
Q psy12546 53 NDEFSDTVLIV--QNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVI 130 (765)
Q Consensus 53 ~~~~sDv~~~v--~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~l 130 (765)
++.+|||+|++ +|++|+|||.|||++|+||++||.++|+ +.+|.|++ ++++|
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~---------------------- 59 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSF---------------------- 59 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHH----------------------
Confidence 88999999998 9999999999999999999999999987 56788888 99998
Q ss_pred HHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHH
Q psy12546 131 LDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQD 210 (765)
Q Consensus 131 l~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~ 210 (765)
+.+|+|||||++.+ +.+++.+++.+|++|+++.
T Consensus 60 --------------------------------------------~~~l~y~Ytg~~~i---~~~~~~~ll~~A~~l~~~~ 92 (534)
T PHA03098 60 --------------------------------------------NEVIKYIYTGKINI---TSNNVKDILSIANYLIIDF 92 (534)
T ss_pred --------------------------------------------HHHHHHhcCCceEE---cHHHHHHHHHHHHHhCcHH
Confidence 56666666666655 4889999999999999999
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHHHHhccCCCCCC-HHHHH
Q psy12546 211 LENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSFYAP-EIDIF 289 (765)
Q Consensus 211 L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~~ll~~d~l~v~-E~~l~ 289 (765)
|++.|+++|...++.+||+.++.+|..|++.+|.+.|.+||.+||.++.++++|..|+.+.+..||++|.+++. |.++|
T Consensus 93 l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~ 172 (534)
T PHA03098 93 LINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVL 172 (534)
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 99999
Q ss_pred HHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcc------cCCCCChhHHHHHHHhhccccccc
Q psy12546 290 RAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVR------SSGIISADKILDAIELQTNDKVQY 363 (765)
Q Consensus 290 ~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~------~~~l~~~~~i~~ai~~~~~~~~~f 363 (765)
+++++|++++..++. .++.+||++|||++|++++|.+++. ...++.++.....+..... +
T Consensus 173 ~av~~W~~~~~~~r~----------~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 238 (534)
T PHA03098 173 EIIIKWLTSKKNNKY----------KDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKY----N 238 (534)
T ss_pred HHHHHHHhcChhhhH----------hHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHh----c
Confidence 999999999977765 4889999999999999999988765 4445433333333221110 1
Q ss_pred ccCCCcccccCCcccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCcCCCccCCCCcccccc
Q psy12546 364 RANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRGYLKPEENLATS 443 (765)
Q Consensus 364 ~~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~~~~~~~~~~~~a~~ 443 (765)
.. ...+|.......++... +. + ......+ .....++.+..++.... ......+..
T Consensus 239 ~~---------~~~~~~~~~~~~~~~~~--g~-~-~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~ 293 (534)
T PHA03098 239 LN---------KILPRSSTFGSIIYIHI--TM-S-IFTYNYI-----------TNYSPLSEINTIIDIHY-VYCFGSVVL 293 (534)
T ss_pred cc---------CCCcCccCCCcceEeec--cc-c-hhhceee-----------ecchhhhhcccccCccc-cccceEEEE
Confidence 00 00001100000000000 00 0 0000000 00001111222221110 011233444
Q ss_pred CCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE-EE
Q psy12546 444 KMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE-VS 522 (765)
Q Consensus 444 ~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~-vs 522 (765)
.+.+|++||.+......+++++||+.+++|...++ |+.+|.++++++++|+||++||.... .+...++ ++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~R~~~~~~~~~~~lyv~GG~~~~-------~~~~~v~~yd 364 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE--LIYPRKNPGVTVFNNRIYVIGGIYNS-------ISLNTVESWK 364 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC--CCcccccceEEEECCEEEEEeCCCCC-------EecceEEEEc
Confidence 55689999987765556789999999999987665 99999999999999999999996421 1112232 45
Q ss_pred ecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCCcccccCCcc--ccc
Q psy12546 523 IDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEEGIIIPKHNV--ATR 599 (765)
Q Consensus 523 ~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~p~~nv--a~~ 599 (765)
+..+.|+.+++|..+++.. -.....+.|+++||....... +..+|+|.+. +.|... .++..|.... +..
T Consensus 365 ~~~~~W~~~~~lp~~r~~~-----~~~~~~~~iYv~GG~~~~~~~--~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~ 436 (534)
T PHA03098 365 PGESKWREEPPLIFPRYNP-----CVVNVNNLIYVIGGISKNDEL--LKTVECFSLNTNKWSKG-SPLPISHYGGCAIYH 436 (534)
T ss_pred CCCCceeeCCCcCcCCccc-----eEEEECCEEEEECCcCCCCcc--cceEEEEeCCCCeeeec-CCCCccccCceEEEE
Confidence 7788999999998765433 112235799999996544332 4567887653 458765 4555554433 344
Q ss_pred ccceeEeeccccccc-----ccccCCcccccCCCCCcccccCCc-cEEEecCCceeeccEEEEeeecCCCeeeEEEE-EE
Q psy12546 600 ELSAKVVEGVSRSLS-----SLIDGNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMRLLLWDCDDRSYSYLVD-VS 672 (765)
Q Consensus 600 ~~~~~~~~g~~~~~~-----~~~~gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~-vs 672 (765)
++..++++|...... .+.-=|+.+..|..-.+.+..+.+ ++++--|+.|++||..- . + +.-.|+ .-
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~---~---~-~~~~v~~yd 509 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKY---E---Y-YINEIEVYD 509 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcC---C---c-ccceeEEEe
Confidence 788999999753221 122226777789987766655444 45556899999999651 1 1 111222 23
Q ss_pred ecCCcceeeeeccCccccceEE
Q psy12546 673 INLWDWEIVADHTRDLCRSWQS 694 (765)
Q Consensus 673 ~d~~~w~~v~~~~~~~~~~~~~ 694 (765)
.+...|..+.+...... +.|.
T Consensus 510 ~~~~~W~~~~~~p~~~~-~~~~ 530 (534)
T PHA03098 510 DKTNTWTLFCKFPKVIG-SLEK 530 (534)
T ss_pred CCCCEEEecCCCccccc-ceee
Confidence 45667988877555544 4443
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.1e-47 Score=430.23 Aligned_cols=437 Identities=12% Similarity=0.129 Sum_probs=318.4
Q ss_pred HHHHHHHHHcCCCCccEEEEECCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEe--cCCCHHHHHHHHHHHhcCCc
Q psy12546 43 LSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIEL--HDTNIVAFKCLLKYIYSGKL 120 (765)
Q Consensus 43 l~~~l~~l~~~~~~sDv~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l--~~v~~~~f~~lL~ylYtg~l 120 (765)
..+++-.|...+.+|||++.+| +.|+|||+|||+.||||++||+++|+|+.+ +|.+ .++++++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l------------ 74 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSL------------ 74 (480)
T ss_pred hhhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHH------------
Confidence 4567778999999999988776 499999999999999999999999999965 4554 37888888
Q ss_pred cccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHH
Q psy12546 121 SFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 200 (765)
Q Consensus 121 ~~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll 200 (765)
+.+|+|+|||++.++ .+++.++|
T Consensus 75 ------------------------------------------------------~~lldy~YTg~l~it---~~nV~~ll 97 (480)
T PHA02790 75 ------------------------------------------------------TSIVIYSYTGKVYID---SHNVVNLL 97 (480)
T ss_pred ------------------------------------------------------HHHHHhheeeeEEEe---cccHHHHH
Confidence 777777777777774 88999999
Q ss_pred HHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCc--cccccCCHHHHHHHhcc
Q psy12546 201 GLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISE--NSFYNLSQNGLIQLIQR 278 (765)
Q Consensus 201 ~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~--~~f~~L~~~~l~~ll~~ 278 (765)
.+|++|+++.++++|++||...|+++||+.++.+|+.|++++|.+.+.+||.+||.++.+. ++|..|+. .+||++
T Consensus 98 ~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~---~~lLss 174 (480)
T PHA02790 98 RASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM---KLILES 174 (480)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH---HHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999876 89999995 689999
Q ss_pred CCCCCC-HHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhcc-ccCCCCCHHHHHHhcccCCCCChhHHHHHHHhh
Q psy12546 279 DSFYAP-EIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTY-VRLPLISLDELLTTVRSSGIISADKILDAIELQ 356 (765)
Q Consensus 279 d~l~v~-E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~-VR~~lls~~~L~~~v~~~~l~~~~~i~~ai~~~ 356 (765)
|.+++. |+++|+++++|++++. .+. ..+.+++++ ||+++|+.+.+..+ . ..+.++..
T Consensus 175 d~L~v~~Ee~V~eav~~Wl~~~~-~~~----------~~l~~~vr~~ir~~~l~~~~l~~~-~-------~~~~~~~~-- 233 (480)
T PHA02790 175 DELNVPDEDYVVDFVIKWYMKRR-NRL----------GNLLLLIKNVIRSNYLSPRGINNV-K-------WILDCTKI-- 233 (480)
T ss_pred ccCCCccHHHHHHHHHHHHHhhH-HHH----------HHHHHHHHhcCChhhCCHHHHHHH-H-------HHHHHHHH--
Confidence 999985 9999999999999862 221 133444444 78888887776431 0 11111111
Q ss_pred cccccccccCCCcccccCCcccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCcCCCccCCC
Q psy12546 357 TNDKVQYRANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRGYLKP 436 (765)
Q Consensus 357 ~~~~~~f~~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~~~~~~~~ 436 (765)
++.. ..+|.... ...++.+ + . ...| ....
T Consensus 234 ------~~~~---------~~~r~~~~----~~~~~~~-~---------------~------~~~~---~~~~------- 262 (480)
T PHA02790 234 ------FHCD---------KQPRKSYK----YPFIEYP-M---------------N------MDQI---IDIF------- 262 (480)
T ss_pred ------hhcc---------cccccccc----ccccccC-C---------------c------ccce---eecc-------
Confidence 0000 00010000 0000000 0 0 0000 0000
Q ss_pred Ccc-ccccCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCcee
Q psy12546 437 EEN-LATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSY 515 (765)
Q Consensus 437 ~~~-~a~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y 515 (765)
... ++...+.+|++||.++.. ...++++|||.++.|...++ |+.+|..+++++++|+||++||.... ....
T Consensus 263 ~~~~~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~~-----~sve 334 (480)
T PHA02790 263 HMCTSTHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPNP-----TSVE 334 (480)
T ss_pred CCcceEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCCC-----CceE
Confidence 011 122344589999986543 34679999999999997765 99999999999999999999996321 1111
Q ss_pred eEEEEEEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCCcccccCC
Q psy12546 516 SYFIEVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEEGIIIPKH 594 (765)
Q Consensus 516 ~y~v~vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~p~~ 594 (765)
.+++..++|..+++|..+++.. ......+.||++||.++.. .++|+|.+. +.|... .++..|..
T Consensus 335 ----~ydp~~n~W~~~~~l~~~r~~~-----~~~~~~g~IYviGG~~~~~-----~~ve~ydp~~~~W~~~-~~m~~~r~ 399 (480)
T PHA02790 335 ----RWFHGDAAWVNMPSLLKPRCNP-----AVASINNVIYVIGGHSETD-----TTTEYLLPNHDQWQFG-PSTYYPHY 399 (480)
T ss_pred ----EEECCCCeEEECCCCCCCCccc-----EEEEECCEEEEecCcCCCC-----ccEEEEeCCCCEEEeC-CCCCCccc
Confidence 2346778999999999776542 2223458999999987542 367887653 558866 56777765
Q ss_pred c--ccccccceeEeecccccccccccCCcccccCCCCCcccccCCc-cEEEecCCceeeccEE
Q psy12546 595 N--VATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMR 654 (765)
Q Consensus 595 n--va~~~~~~~~~~g~~~~~~~~~~gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~ 654 (765)
. ++++.++.+|+||.. . --|+.+..|+...+++..+.+ +++|--|++|+|||..
T Consensus 400 ~~~~~~~~~~IYv~GG~~----e--~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 400 KSCALVFGRRLFLVGRNA----E--FYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred cceEEEECCEEEEECCce----E--EecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 4 345588899999831 1 125566689999888876655 6888899999999953
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=340.30 Aligned_cols=456 Identities=12% Similarity=0.119 Sum_probs=307.9
Q ss_pred cchHhHHHhhhcCcccCC-ccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHh
Q psy12546 143 TLTQNFRALLYGGLCESN-QNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRV 221 (765)
Q Consensus 143 ~~S~yF~amf~~~~~Es~-~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~ 221 (765)
++|+||++||+++|+|+. +++|+|+++++ .. .+.+++++|++ .
T Consensus 47 a~S~YF~amF~~~~~e~~~~~~v~l~~v~~---~~----------------~~~ll~y~Yt~----------------~- 90 (557)
T PHA02713 47 AGSKYFRTLFTTPMIIRDLVTRVNLQMFDK---DA----------------VKNIVQYLYNR----------------H- 90 (557)
T ss_pred hcCHHHHHHhcCCchhhccCceEEeccCCH---HH----------------HHHHHHHhcCC----------------C-
Confidence 589999999999999874 89999999998 55 88999999988 3
Q ss_pred hcChhhHHHHHHHHHHcCcHHHHHHHHHHHhccc--ccccCccccccCCHHHHHHHhccCCCCCCHHHHHHHHHHHHhhC
Q psy12546 222 ILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNA--KQIISENSFYNLSQNGLIQLIQRDSFYAPEIDIFRAVVDWIKAN 299 (765)
Q Consensus 222 ~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~--~~v~~~~~f~~L~~~~l~~ll~~d~l~v~E~~l~~av~~Wi~~n 299 (765)
++.+|+.++|.+|+.++++.|++.|.+||.+++ .+++..-.+ .....+. +|.+++.+++..|
T Consensus 91 -i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~-------------~~~~~~~--~L~~~a~~~i~~~ 154 (557)
T PHA02713 91 -ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHR-------------LYEMSHI--PIVKYIKRMLMSN 154 (557)
T ss_pred -CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHH-------------HHhccch--HHHHHHHHHHHHH
Confidence 688999999999999999999999999999865 333322111 1223333 5789999999999
Q ss_pred CCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCC-C-C-ChhHHHHHHHhhcccccccccCCCcccccCCc
Q psy12546 300 SPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSG-I-I-SADKILDAIELQTNDKVQYRANSPEVEEDGES 376 (765)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~-l-~-~~~~i~~ai~~~~~~~~~f~~~~~~~~~~~~~ 376 (765)
+.++. ..++|++ |+.++|.+++.++. | + +++.+++|+. +|++||.+.
T Consensus 155 f~~v~-----------~~~ef~~------L~~~~l~~lL~~d~~l~v~~Ee~v~eav~-------------~W~~~d~~~ 204 (557)
T PHA02713 155 IPTLI-----------TTDAFKK------TVFEILFDIISTNDNVYLYREGYKVTILL-------------KWLEYNYIT 204 (557)
T ss_pred HHHHh-----------CChhhhh------CCHHHHHHHhccccccCCCcHHHHHHHHH-------------HHHhcCHHH
Confidence 98886 5567777 99999999999876 4 3 4566766655 566666543
Q ss_pred ccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCcCCCccCCCCccccccCCcEEEEeeccCC
Q psy12546 377 SFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRGYLKPEENLATSKMGTMVMQGEMKN 456 (765)
Q Consensus 377 ~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~~~~~~~~~~~~a~~~~~~~viGG~~~~ 456 (765)
|. .+.++|++||||+|++.++. .+..+++++.+.-+..+-. ..+.. .+..++...+++.||...
T Consensus 205 --r~--~~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~---~a~~~-------~~~~~r~~~l~~~~g~~~- 268 (557)
T PHA02713 205 --EE--QLLCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLL---DNKQN-------RNIIPRQLCLVCHDTKYN- 268 (557)
T ss_pred --HH--HHhhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHh---hhhhh-------cccCCcceEEEEecCccc-
Confidence 32 46699999999999998876 5666666665532222200 00000 011112222344455321
Q ss_pred ccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEE-EEEecCCCeEEEeccc
Q psy12546 457 ALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFI-EVSIDQKKWTRVIDYT 535 (765)
Q Consensus 457 ~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v-~vs~~~~~W~~v~~~~ 535 (765)
.....+++|||.++.|....+ |+.+|.++++++++|+||++||.... .. ....| .+++..+.|..+++|.
T Consensus 269 -~~~~~v~~yd~~~~~W~~l~~--mp~~r~~~~~a~l~~~IYviGG~~~~-----~~-~~~~v~~Yd~~~n~W~~~~~m~ 339 (557)
T PHA02713 269 -VCNPCILVYNINTMEYSVIST--IPNHIINYASAIVDNEIIIAGGYNFN-----NP-SLNKVYKINIENKIHVELPPMI 339 (557)
T ss_pred -cCCCCEEEEeCCCCeEEECCC--CCccccceEEEEECCEEEEEcCCCCC-----CC-ccceEEEEECCCCeEeeCCCCc
Confidence 123578999999999997665 99999999999999999999995311 01 11123 2457778899999999
Q ss_pred ccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCCcccccCCccc--ccccceeEeeccccc
Q psy12546 536 RFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEEGIIIPKHNVA--TRELSAKVVEGVSRS 612 (765)
Q Consensus 536 ~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~p~~nva--~~~~~~~~~~g~~~~ 612 (765)
..++.. -.....+.||++||.++... +.++|+|.+. ++|... .++..|..+.+ +.++..+|+||....
T Consensus 340 ~~R~~~-----~~~~~~g~IYviGG~~~~~~---~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~ 410 (557)
T PHA02713 340 KNRCRF-----SLAVIDDTIYAIGGQNGTNV---ERTIECYTMGDDKWKML-PDMPIALSSYGMCVLDQYIYIIGGRTEH 410 (557)
T ss_pred chhhce-----eEEEECCEEEEECCcCCCCC---CceEEEEECCCCeEEEC-CCCCcccccccEEEECCEEEEEeCCCcc
Confidence 876643 11234589999999876542 4578998664 568866 56777766554 458899999996421
Q ss_pred c--------------------cccccCCcccccCCCCCcccccCCc-cEEEecCCceeeccEEEEeeecCCCeeeEEEEE
Q psy12546 613 L--------------------SSLIDGNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDV 671 (765)
Q Consensus 613 ~--------------------~~~~~gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~v 671 (765)
. +.+.--|+.+..|+.-.+++..+.+ ++++--|++|++||.. +.....-.||+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~------~~~~~~~~ve~ 484 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIK------DEKNVKTCIFR 484 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCC------CCCccceeEEE
Confidence 1 1122237777789999888777655 5788889999999954 11111122333
Q ss_pred E-ecC-CcceeeeeccCccccceEEEEeecCCEEEEEEEeccCCcceeEEEEeeeecCCCCC
Q psy12546 672 S-INL-WDWEIVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNTMNEVFHCVHFECPDQSIK 731 (765)
Q Consensus 672 s-~d~-~~w~~v~~~~~~~~~~~~~~~f~~~~~~~ir~~~~~~~~~~~~~~~~~e~~~~~~~ 731 (765)
= .+. ..|+.+++...... +-....+. . .|=++|-.++. ..+||+.....
T Consensus 485 Ydp~~~~~W~~~~~m~~~r~-~~~~~~~~--~--~iyv~Gg~~~~------~~~e~yd~~~~ 535 (557)
T PHA02713 485 YNTNTYNGWELITTTESRLS-ALHTILHD--N--TIMMLHCYESY------MLQDTFNVYTY 535 (557)
T ss_pred ecCCCCCCeeEccccCcccc-cceeEEEC--C--EEEEEeeecce------eehhhcCcccc
Confidence 2 233 47999998654333 21222222 2 33345555552 25677665444
No 8
>KOG4441|consensus
Probab=99.96 E-value=9.8e-29 Score=284.03 Aligned_cols=447 Identities=17% Similarity=0.217 Sum_probs=316.0
Q ss_pred HHHHHhhhccCCC----CcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHh
Q psy12546 129 VILDILGKKQNKG----TTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSH 204 (765)
Q Consensus 129 ~ll~i~~~~~~~~----~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~ 204 (765)
+++.+..+.++.| .++|+||++||+++|+|+.+.+|.|+++++ .. .+.+++++|++
T Consensus 39 v~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~---~~----------------l~~ll~y~Yt~- 98 (571)
T KOG4441|consen 39 VTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDP---ET----------------LELLLDYAYTG- 98 (571)
T ss_pred EEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCH---HH----------------HHHHHHHhhcc-
Confidence 3333444444444 267999999999999999999999999998 65 88999999999
Q ss_pred hhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhccc--ccccCccccccCCHHHHHHHhccCCCC
Q psy12546 205 KYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNA--KQIISENSFYNLSQNGLIQLIQRDSFY 282 (765)
Q Consensus 205 ~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~--~~v~~~~~f~~L~~~~l~~ll~~d~l~ 282 (765)
...|+.+|+..++.+|..+++..+.+.|.+|+.+++ .+++....|. +.+.
T Consensus 99 ---------------~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a-------------~~~~ 150 (571)
T KOG4441|consen 99 ---------------KLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFA-------------ELHS 150 (571)
T ss_pred ---------------eEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HhcC
Confidence 999999999999999999999999999999999864 5666655554 4455
Q ss_pred CCHHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCC--ChhHHHHHHHhhcccc
Q psy12546 283 APEIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGII--SADKILDAIELQTNDK 360 (765)
Q Consensus 283 v~E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~--~~~~i~~ai~~~~~~~ 360 (765)
+. ++.+.+..++.+|+.++. ..+++|. ++.++|..++.++.|. +++.+++|+
T Consensus 151 ~~--~L~~~a~~~i~~~F~~v~-----------~~eefl~------L~~~~l~~ll~~d~l~v~~E~~vf~a~------- 204 (571)
T KOG4441|consen 151 CT--ELLEVADEYILQHFAEVS-----------KTEEFLL------LSLEELIGLLSSDDLNVDSEEEVFEAA------- 204 (571)
T ss_pred cH--HHHHHHHHHHHHHHHHHh-----------ccHHhhC------CCHHHHHhhccccCCCcCCHHHHHHHH-------
Confidence 54 789999999999998886 6677777 9999999999999994 344555554
Q ss_pred cccccCCCcccccCCcccccccccccccceecccccCccceeeeeeccccccchhhHhHhhhccccCcCCCccCCCCccc
Q psy12546 361 VQYRANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRGYLKPEENL 440 (765)
Q Consensus 361 ~~f~~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~~~~~~~~~~~~ 440 (765)
+.|++||.+. | ..+++.++..||+|++++.+|...+...++++.+..+..+- .... +.+++|....
T Consensus 205 ------~~Wv~~d~~~--R-~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l----~ea~-~~~~~~~~~~ 270 (571)
T KOG4441|consen 205 ------MRWVKHDFEE--R-EEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLL----DEAK-KYHLLPQRRP 270 (571)
T ss_pred ------HHHHhcCHhh--H-HHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHH----HHHH-HHhhCcccCc
Confidence 4566666543 3 34899999999999999999999999999888876554441 1110 2222221110
Q ss_pred cccCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE
Q psy12546 441 ATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE 520 (765)
Q Consensus 441 a~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~ 520 (765)
.|+.+|..... ...+.||++||... . ....-.++
T Consensus 271 ---------------------------------------~~~~~~t~~r~-~~~~~l~~vGG~~~-----~-~~~~~~ve 304 (571)
T KOG4441|consen 271 ---------------------------------------VMQSPRTRPRR-SVSGKLVAVGGYNR-----Q-GQSLRSVE 304 (571)
T ss_pred ---------------------------------------cccCCCcccCc-CCCCeEEEECCCCC-----C-CcccceeE
Confidence 02222322222 56789999999642 1 12222344
Q ss_pred -EEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCCcccccCCccc-
Q psy12546 521 -VSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEEGIIIPKHNVA- 597 (765)
Q Consensus 521 -vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~p~~nva- 597 (765)
+.+..+.|..+++|...+|+. -.....++||++||++. ....+.++|+|.+. +.|... .+|..++.+.+
T Consensus 305 ~yd~~~~~w~~~a~m~~~r~~~-----~~~~~~~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~-a~M~~~R~~~~v 376 (571)
T KOG4441|consen 305 CYDPKTNEWSSLAPMPSPRCRV-----GVAVLNGKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPV-APMNTKRSDFGV 376 (571)
T ss_pred EecCCcCcEeecCCCCcccccc-----cEEEECCEEEEEccccC--CCcccceEEEecCCCCceecc-CCccCcccccee
Confidence 345566799999999888843 12234589999999995 22346789998764 558865 67888877554
Q ss_pred -ccccceeEeecccccccccccC----CcccccCCCCCcccccCCc-cEEEecCCceeeccEEEEeeecCCCeeeEEEEE
Q psy12546 598 -TRELSAKVVEGVSRSLSSLIDG----NTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDV 671 (765)
Q Consensus 598 -~~~~~~~~~~g~~~~~~~~~~g----d~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~v 671 (765)
+..+..||++|... ...++. |+.+..|+.-.++++.+++ +.++--|+.|+|||... .+++=.....|
T Consensus 377 ~~l~g~iYavGG~dg--~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~-~~~~l~sve~Y---- 449 (571)
T KOG4441|consen 377 AVLDGKLYAVGGFDG--EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG-SSNCLNSVECY---- 449 (571)
T ss_pred EEECCEEEEEecccc--ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC-CccccceEEEE----
Confidence 45899999999753 333343 8888889999999987777 78999999999999763 22222333222
Q ss_pred EecCCcceeeeeccCccccceEEEEeecCCEEEEEEEeccCCcceeEEEEeeeecCCCCCC
Q psy12546 672 SINLWDWEIVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNTMNEVFHCVHFECPDQSIKL 732 (765)
Q Consensus 672 s~d~~~w~~v~~~~~~~~~~~~~~~f~~~~~~~ir~~~~~~~~~~~~~~~~~e~~~~~~~~ 732 (765)
-.....|..++.....-+ +-... .--.+|=++|.+++ ... .-..|+.......
T Consensus 450 DP~t~~W~~~~~M~~~R~--~~g~a---~~~~~iYvvGG~~~-~~~--~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 450 DPETNTWTLIAPMNTRRS--GFGVA---VLNGKIYVVGGFDG-TSA--LSSVERYDPETNQ 502 (571)
T ss_pred cCCCCceeecCCcccccc--cceEE---EECCEEEEECCccC-CCc--cceEEEEcCCCCc
Confidence 245679999998665543 22221 11134556777776 222 3347777766554
No 9
>KOG2075|consensus
Probab=99.95 E-value=4.9e-26 Score=240.66 Aligned_cols=244 Identities=26% Similarity=0.451 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEC-----CEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHH
Q psy12546 40 VQFLSEMIGNLYLNDEFSDTVLIVQ-----NEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKY 114 (765)
Q Consensus 40 ~~~l~~~l~~l~~~~~~sDv~~~v~-----~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~y 114 (765)
...+.+....+++++..+||.|+|| -++|||||.|||..|+.|.+||+|++.+....+|+++++.|.+|..+|+|
T Consensus 98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~f 177 (521)
T KOG2075|consen 98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRF 177 (521)
T ss_pred hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHH
Confidence 4567778888999999999999997 47999999999999999999999999999788999999999999666666
Q ss_pred HhcCCccccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChh
Q psy12546 115 IYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDD 194 (765)
Q Consensus 115 lYtg~l~~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~ 194 (765)
||++.+. + ..+
T Consensus 178 lYsdev~------------------------------------------------------------------~---~~d 188 (521)
T KOG2075|consen 178 LYSDEVK------------------------------------------------------------------L---AAD 188 (521)
T ss_pred Hhcchhh------------------------------------------------------------------h---hHH
Confidence 6665443 2 489
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHH-HHHcCcHHHHHHHHHHHhcccccccCccccccCC--HHH
Q psy12546 195 VILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDC-AYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLS--QNG 271 (765)
Q Consensus 195 ~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~-A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~--~~~ 271 (765)
+++.+|++|++|.++.|++.|.++|+..+...|.+..+.. |..++-++|.+.|.+-|..++...+..+.|..+. .+.
T Consensus 189 tvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~~dt 268 (521)
T KOG2075|consen 189 TVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDSTRDT 268 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhHHHH
Confidence 9999999999999999999999999999999988877777 9999999999999999999999999999999988 999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCCChhHHHH
Q psy12546 272 LIQLIQRDSFYAPEIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGIISADKILD 351 (765)
Q Consensus 272 l~~ll~~d~l~v~E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~~~~~i~~ 351 (765)
++++|+++.+.++|..+|+|+.+|+....+ +.+-+......+.-....+..+|||+|..+++..-+.++++.+..+.++
T Consensus 269 ~~evl~r~~l~~~e~~lfeA~lkw~~~e~~-rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~sgIl~d~e~~~ 347 (521)
T KOG2075|consen 269 YEEVLRRDTLEAREFRLFEAALKWAEAECQ-RSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQSGILTDREPLK 347 (521)
T ss_pred HHHHHhhcccchhHHHHHHHHHhhccCcch-hhcCCCCccchhhhhhheeeeecccccchhhhccCccccCCccccchHh
Confidence 999999999999999999999999998743 3333444444445677889999999999999999999999987666554
Q ss_pred HH
Q psy12546 352 AI 353 (765)
Q Consensus 352 ai 353 (765)
..
T Consensus 348 ~F 349 (521)
T KOG2075|consen 348 LF 349 (521)
T ss_pred hh
Confidence 44
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=2e-25 Score=258.83 Aligned_cols=424 Identities=14% Similarity=0.136 Sum_probs=278.4
Q ss_pred cchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhh
Q psy12546 143 TLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVI 222 (765)
Q Consensus 143 ~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~ 222 (765)
++|+||++||.++|+ +.+|.|++ ++ +. .+.+++++|.+ ...
T Consensus 32 a~S~yF~~mf~~~~~---~~~i~l~~-~~---~~----------------~~~~l~y~Ytg----------------~~~ 72 (534)
T PHA03098 32 SSSEYFKKMFKNNFK---ENEINLNI-DY---DS----------------FNEVIKYIYTG----------------KIN 72 (534)
T ss_pred hhhHHHHHHHhCCCC---CceEEecC-CH---HH----------------HHHHHHHhcCC----------------ceE
Confidence 569999999999999 67899998 77 54 88999999999 788
Q ss_pred cChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHHHHh-ccCCCCCCHHHHHHHHHHHHhhCCC
Q psy12546 223 LTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLI-QRDSFYAPEIDIFRAVVDWIKANSP 301 (765)
Q Consensus 223 l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~~ll-~~d~l~v~E~~l~~av~~Wi~~n~~ 301 (765)
++.+|+.+++.+|+.|+++.|++.|.+||.+++. .+....++ -.+.+++. +|.+++.+++..|+.
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~------------~~nc~~~~~~a~~~~~~--~L~~~~~~~i~~nf~ 138 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKIID------------DNNCIDIYRFSFFYGCK--KLYSAAYNYIRNNIE 138 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC------------HhHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998642 11112222 12334444 789999999999987
Q ss_pred cccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCC--ChhHHHHHHHhhcccccccccCCCcccccCCcccc
Q psy12546 302 EVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGII--SADKILDAIELQTNDKVQYRANSPEVEEDGESSFR 379 (765)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~--~~~~i~~ai~~~~~~~~~f~~~~~~~~~~~~~~~R 379 (765)
++. ..+++++ |+.+.|..++..+.|. +++.+++++..|. +++.+. |
T Consensus 139 ~v~-----------~~~~f~~------l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~-------------~~~~~~--r 186 (534)
T PHA03098 139 LIY-----------NDPDFIY------LSKNELIKILSDDKLNVSSEDVVLEIIIKWL-------------TSKKNN--K 186 (534)
T ss_pred HHh-----------cCchhhc------CCHHHHHHHhcCCCcCcCCHHHHHHHHHHHH-------------hcChhh--h
Confidence 665 3445555 8999999999999984 4667877777554 444333 3
Q ss_pred cccccccccceecccccCccceeeeee------ccccccch----hhHhHhhhccccCcCCCccCCCCccccccCCcEEE
Q psy12546 380 APINMDEILTYVRLPLISLDELLTTVR------SSGIISAD----KILDAIELQTNDKVQYRGYLKPEENLATSKMGTMV 449 (765)
Q Consensus 380 ~~~~~~~ll~~VRlpli~~~~l~~~v~------~~~l~~~~----~l~ea~~~~~~~~l~~~~~~~~~~~~a~~~~~~~v 449 (765)
. .++++++.+||||+|++++|...+. ...++.+. .+.++.. +. +. ..+ +..+....+++
T Consensus 187 ~-~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~---~~~--~~~~~~~~~~~ 255 (534)
T PHA03098 187 Y-KDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKY---NL--NK---ILP--RSSTFGSIIYI 255 (534)
T ss_pred H-hHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHh---cc--cC---CCc--CccCCCcceEe
Confidence 2 3789999999999999998877654 33443221 1112221 11 00 000 00011111333
Q ss_pred EeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEEEEecCCCeE
Q psy12546 450 MQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWT 529 (765)
Q Consensus 450 iGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~~~W~ 529 (765)
.||.+. ....+.+|++..+.|....+ ++. +..+++++.++.+|++||.... ....+-...+.+..+.|.
T Consensus 256 ~~g~~~---~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~lyv~GG~~~~-----~~~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 256 HITMSI---FTYNYITNYSPLSEINTIID--IHY-VYCFGSVVLNNVIYFIGGMNKN-----NLSVNSVVSYDTKTKSWN 324 (534)
T ss_pred ecccch---hhceeeecchhhhhcccccC--ccc-cccceEEEECCEEEEECCCcCC-----CCeeccEEEEeCCCCeee
Confidence 455431 22456789999999996543 332 4457999999999999996421 111111123457788999
Q ss_pred EEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCCcccccCCccccc--ccceeEe
Q psy12546 530 RVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEEGIIIPKHNVATR--ELSAKVV 606 (765)
Q Consensus 530 ~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~p~~nva~~--~~~~~~~ 606 (765)
.+++|..+++.. -.....+.|+++||.++.. .+..+|+|... ++|... .++..|+.+.+.+ ++..+++
T Consensus 325 ~~~~~~~~R~~~-----~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~-~~lp~~r~~~~~~~~~~~iYv~ 395 (534)
T PHA03098 325 KVPELIYPRKNP-----GVTVFNNRIYVIGGIYNSI---SLNTVESWKPGESKWREE-PPLIFPRYNPCVVNVNNLIYVI 395 (534)
T ss_pred ECCCCCcccccc-----eEEEECCEEEEEeCCCCCE---ecceEEEEcCCCCceeeC-CCcCcCCccceEEEECCEEEEE
Confidence 999998665432 1112357999999987433 34578887653 558765 5677777665544 7889999
Q ss_pred eccccccc---ccccCCcccccCCCCCcccccCCc-cEEEecCCceeeccEEEEeeecCCCeeeEEEEEEecCCcceeee
Q psy12546 607 EGVSRSLS---SLIDGNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSINLWDWEIVA 682 (765)
Q Consensus 607 ~g~~~~~~---~~~~gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~vs~d~~~w~~v~ 682 (765)
||...... .+.-=|+.+..|....+.+..+.+ ++++.-|+.|++||..- ..+...++---........|+.+.
T Consensus 396 GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 396 GGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY---IDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC---CCCCcccceEEEecCCCCceeeCC
Confidence 99643222 122226667779998887766555 46777899999999641 111111211111233466899987
Q ss_pred ecc
Q psy12546 683 DHT 685 (765)
Q Consensus 683 ~~~ 685 (765)
...
T Consensus 473 ~~~ 475 (534)
T PHA03098 473 SLN 475 (534)
T ss_pred CCC
Confidence 643
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=247.54 Aligned_cols=393 Identities=13% Similarity=0.080 Sum_probs=255.7
Q ss_pred HHHhhhccCCCC----cchHhHHHhhhcCcccCCcccccc--ccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHh
Q psy12546 131 LDILGKKQNKGT----TLTQNFRALLYGGLCESNQNEIEL--HDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSH 204 (765)
Q Consensus 131 l~i~~~~~~~~~----~~S~yF~amf~~~~~Es~~~~i~l--~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~ 204 (765)
+.+.+..++.|. ++|+||||||+++|+|+++ +|.+ .++++ .. .+.+++++|++
T Consensus 26 ~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~---~~----------------l~~lldy~YTg- 84 (480)
T PHA02790 26 IEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDI---HS----------------LTSIVIYSYTG- 84 (480)
T ss_pred EEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCH---HH----------------HHHHHHhheee-
Confidence 344455566553 5799999999999999965 5665 38887 65 89999999999
Q ss_pred hhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhccc--ccccCccccccCCHHHHHHHhccCCCC
Q psy12546 205 KYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNA--KQIISENSFYNLSQNGLIQLIQRDSFY 282 (765)
Q Consensus 205 ~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~--~~v~~~~~f~~L~~~~l~~ll~~d~l~ 282 (765)
+..|+.+|+.+++.+|..++++.+.+.|.+||.+++ .+++....|. +.++
T Consensus 85 ---------------~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A-------------~~y~ 136 (480)
T PHA02790 85 ---------------KVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMG-------------IEYG 136 (480)
T ss_pred ---------------eEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHH-------------HHhC
Confidence 999999999999999999999999999999999865 5665544443 4445
Q ss_pred CCHHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCC--ChhHHHHHHHhhcccc
Q psy12546 283 APEIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGII--SADKILDAIELQTNDK 360 (765)
Q Consensus 283 v~E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~--~~~~i~~ai~~~~~~~ 360 (765)
+. +|.+++.+++..|+.++.++ ..++|+. |+. .+++.++.|. +++.+++|+..|.+.+
T Consensus 137 ~~--~L~~~a~~fi~~nF~~v~~~---------~~~ef~~------L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 137 LS--NLLCHTKDFIAKHFLELEDD---------IIDNFDY------LSM---KLILESDELNVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred HH--HHHHHHHHHHHHhHHHHhcc---------cchhhhh------CCH---HHhcccccCCCccHHHHHHHHHHHHHhh
Confidence 54 78999999999999887610 1255655 565 4567788884 4567888887665532
Q ss_pred cccccCCCcccccCCcccccccccccccce-ecccccCccceeeeeeccccccchhhHhHhhhccccCcCCCccCCCCcc
Q psy12546 361 VQYRANSPEVEEDGESSFRAPINMDEILTY-VRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRGYLKPEEN 439 (765)
Q Consensus 361 ~~f~~~~~~~~~~~~~~~R~~~~~~~ll~~-VRlpli~~~~l~~~v~~~~l~~~~~l~ea~~~~~~~~l~~~~~~~~~~~ 439 (765)
. . |.+ .+.+++++ ||+++++...+.. + . ..+.++.. ++..+
T Consensus 197 ~-------------~---~~~-~l~~~vr~~ir~~~l~~~~l~~-~------~-~~~~~~~~---~~~~~---------- 238 (480)
T PHA02790 197 R-------------N---RLG-NLLLLIKNVIRSNYLSPRGINN-V------K-WILDCTKI---FHCDK---------- 238 (480)
T ss_pred H-------------H---HHH-HHHHHHHhcCChhhCCHHHHHH-H------H-HHHHHHHH---hhccc----------
Confidence 1 0 111 33334444 7777777665532 0 0 11112221 11000
Q ss_pred ccccCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCcc-EEEEcCeeEEEcceeeeeecCCCceeeEE
Q psy12546 440 LATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNG-ILIKLGTQAIVNHIKLLLWDKDLRSYSYF 518 (765)
Q Consensus 440 ~a~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~-vvvl~g~iYiiGG~~~~~~~~~~~~y~y~ 518 (765)
.++...-+. ...|.+..+.|... .+++ ++++++.+|++||.... ...+-.
T Consensus 239 -~~r~~~~~~-------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~lyviGG~~~~------~~~~~v 289 (480)
T PHA02790 239 -QPRKSYKYP-------------FIEYPMNMDQIIDI---------FHMCTSTHVGEVVYLIGGWMNN------EIHNNA 289 (480)
T ss_pred -ccccccccc-------------ccccCCcccceeec---------cCCcceEEECCEEEEEcCCCCC------CcCCeE
Confidence 000000000 01134556667731 1234 45699999999996321 111112
Q ss_pred EEEEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCCcccccCCccc
Q psy12546 519 IEVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEEGIIIPKHNVA 597 (765)
Q Consensus 519 v~vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~p~~nva 597 (765)
..+++..++|..+++|..+++.. ......+.|+++||.++.+ ++|+|.+. +.|... .++..|..+.+
T Consensus 290 ~~Ydp~~~~W~~~~~m~~~r~~~-----~~v~~~~~iYviGG~~~~~------sve~ydp~~n~W~~~-~~l~~~r~~~~ 357 (480)
T PHA02790 290 IAVNYISNNWIPIPPMNSPRLYA-----SGVPANNKLYVVGGLPNPT------SVERWFHGDAAWVNM-PSLLKPRCNPA 357 (480)
T ss_pred EEEECCCCEEEECCCCCchhhcc-----eEEEECCEEEEECCcCCCC------ceEEEECCCCeEEEC-CCCCCCCcccE
Confidence 23457788999999998776542 1123468999999986543 46887653 457755 56777777654
Q ss_pred --ccccceeEeecccccccccccCCcccccCCCCCcccccCCc-cEEEecCCceeeccEEEEeeecCCCeeeEEEEEEec
Q psy12546 598 --TRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSIN 674 (765)
Q Consensus 598 --~~~~~~~~~~g~~~~~~~~~~gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~vs~d 674 (765)
+.++..||+||.....+...-=|+.+..|+...+++..+.+ ++++--|++|++||.. ..|+ .+
T Consensus 358 ~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~--------e~yd------p~ 423 (480)
T PHA02790 358 VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNA--------EFYC------ES 423 (480)
T ss_pred EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCce--------EEec------CC
Confidence 44889999999643222211226777789999988877666 5667789999999831 1232 24
Q ss_pred CCcceeeeecc
Q psy12546 675 LWDWEIVADHT 685 (765)
Q Consensus 675 ~~~w~~v~~~~ 685 (765)
...|+.+++..
T Consensus 424 ~~~W~~~~~m~ 434 (480)
T PHA02790 424 SNTWTLIDDPI 434 (480)
T ss_pred CCcEeEcCCCC
Confidence 67999998754
No 12
>KOG0783|consensus
Probab=99.88 E-value=1.7e-22 Score=223.29 Aligned_cols=237 Identities=22% Similarity=0.317 Sum_probs=185.2
Q ss_pred hHHHHHHHHHHHHcCC----CCccEEEEECCEEEEeehhHHHhcCHHHHHHhcCCccC--CC----------CeeEEecC
Q psy12546 39 HVQFLSEMIGNLYLND----EFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCE--SN----------QNEIELHD 102 (765)
Q Consensus 39 ~~~~l~~~l~~l~~~~----~~sDv~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~e--s~----------~~~I~l~~ 102 (765)
..+.|...+.+|+... .+.||+|.||+..|+|||.||++||+|||+||...... +. ...|.+++
T Consensus 537 ~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~ 616 (1267)
T KOG0783|consen 537 ASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVED 616 (1267)
T ss_pred ccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeecc
Confidence 3345777788887754 37899999999999999999999999999999653322 11 22466889
Q ss_pred CCHHHHHHHHHHHhcCCcccc---------------------CcchhHHHHHhhhccCCC--------------------
Q psy12546 103 TNIVAFKCLLKYIYSGKLSFR---------------------NLKDDVILDILGKKQNKG-------------------- 141 (765)
Q Consensus 103 v~~~~f~~lL~ylYtg~l~~~---------------------~~~~~~ll~i~~~~~~~~-------------------- 141 (765)
++|.+|+.+|+||||+.+-.+ ....++++.++.+.....
T Consensus 617 i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s~~~~~~~~n~ia~ 696 (1267)
T KOG0783|consen 617 IPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVSRQPLLSLTNDIAQ 696 (1267)
T ss_pred CCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhhccchhhcccHHHH
Confidence 999999999999999954211 111223444433322110
Q ss_pred ----------------------------------CcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhc-Cce
Q psy12546 142 ----------------------------------TTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYS-GKL 186 (765)
Q Consensus 142 ----------------------------------~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYt-g~i 186 (765)
.+.++||..||..-|.|+.+-.+.+-.+..+.|+.+|+|+|+ ++.
T Consensus 697 ~~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~ 776 (1267)
T KOG0783|consen 697 LYNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKV 776 (1267)
T ss_pred HhcCeeEecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchH
Confidence 012999999999999999997777777889999999999994 444
Q ss_pred ecc-c-CChhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCcccc
Q psy12546 187 SFR-N-LKDDVILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSF 264 (765)
Q Consensus 187 ~l~-~-~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f 264 (765)
.+- + -..+.+.+++..||+|.+.+|++.|+..|...|+..++-.++++|..|++.+|+..|++||+.|+..++.....
T Consensus 777 ~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi 856 (1267)
T KOG0783|consen 777 ELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSI 856 (1267)
T ss_pred HHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccH
Confidence 321 1 13567899999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred ccCCHHHHHHH
Q psy12546 265 YNLSQNGLIQL 275 (765)
Q Consensus 265 ~~L~~~~l~~l 275 (765)
..++-..|+.+
T Consensus 857 ~~~dg~~LK~l 867 (1267)
T KOG0783|consen 857 SEWDGFHLKKL 867 (1267)
T ss_pred hhhcchHHHHH
Confidence 66665555443
No 13
>KOG4591|consensus
Probab=99.76 E-value=5.4e-18 Score=159.92 Aligned_cols=176 Identities=22% Similarity=0.425 Sum_probs=146.7
Q ss_pred cchHHHHHHHHHHHHcCCCCccEEEEEC---CEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHH
Q psy12546 37 IEHVQFLSEMIGNLYLNDEFSDTVLIVQ---NEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLK 113 (765)
Q Consensus 37 ~~~~~~l~~~l~~l~~~~~~sDv~~~v~---~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ 113 (765)
..+++.+..-...|++.+.|+|++|+++ .+.+||||.|||+||+++. |.++- .....+..+.++++++|
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~-dekse~~~~dDad~Ea~----- 118 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGG-DEKSEELDLDDADFEAF----- 118 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCC-CcchhhhcccccCHHHH-----
Confidence 4678899999999999999999999997 5789999999999999874 22221 12234556677888887
Q ss_pred HHhcCCccccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCCh
Q psy12546 114 YIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKD 193 (765)
Q Consensus 114 ylYtg~l~~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~ 193 (765)
...++||||+++.+. ++.
T Consensus 119 -------------------------------------------------------------~t~iRWIYTDEidfk-~dD 136 (280)
T KOG4591|consen 119 -------------------------------------------------------------HTAIRWIYTDEIDFK-EDD 136 (280)
T ss_pred -------------------------------------------------------------HHhheeeeccccccc-cch
Confidence 555555555555553 357
Q ss_pred hHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHH
Q psy12546 194 DVILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLI 273 (765)
Q Consensus 194 ~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~ 273 (765)
+.++++..+|++|++.-|++.|++-+...+.++||+.++++|+..+...|...|.+.|..++..+ ..+.|.+++...+.
T Consensus 137 ~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqMs~aLLY 215 (280)
T KOG4591|consen 137 EFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQMSAALLY 215 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhccHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999876 67889999999999
Q ss_pred HHhccCCCCC
Q psy12546 274 QLIQRDSFYA 283 (765)
Q Consensus 274 ~ll~~d~l~v 283 (765)
+++....-+.
T Consensus 216 klId~kTe~~ 225 (280)
T KOG4591|consen 216 KLIDGKTENP 225 (280)
T ss_pred HHHcCCCcch
Confidence 9998766553
No 14
>KOG4682|consensus
Probab=99.71 E-value=6.1e-17 Score=168.03 Aligned_cols=184 Identities=23% Similarity=0.399 Sum_probs=166.4
Q ss_pred HHHHHHcCCCCccEEEEECCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEec----CCCHHHHHHHHHHHhcCCcc
Q psy12546 46 MIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELH----DTNIVAFKCLLKYIYSGKLS 121 (765)
Q Consensus 46 ~l~~l~~~~~~sDv~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~----~v~~~~f~~lL~ylYtg~l~ 121 (765)
-+++|+.+++.+||++-+=|.+...||..|. .|+||.+||.|-|+|+++..|.|. .++..+|
T Consensus 59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al------------- 124 (488)
T KOG4682|consen 59 IYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVAL------------- 124 (488)
T ss_pred HHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHH-------------
Confidence 4567899999999999999999999999996 799999999999999999887773 2444455
Q ss_pred ccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHH
Q psy12546 122 FRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILG 201 (765)
Q Consensus 122 ~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~ 201 (765)
..++.-+|.+++.+ +.+.++.++.
T Consensus 125 -----------------------------------------------------~~a~gsLY~dEveI---~l~dv~gvlA 148 (488)
T KOG4682|consen 125 -----------------------------------------------------QVAFGSLYRDEVEI---KLSDVVGVLA 148 (488)
T ss_pred -----------------------------------------------------HHHHhhhhhhheec---cHHHHHHHHH
Confidence 77777777777776 5999999999
Q ss_pred HHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHHHHhccCCC
Q psy12546 202 LSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSF 281 (765)
Q Consensus 202 ~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~~ll~~d~l 281 (765)
+|..++++.|.+.|.+.+...|++++++..+++|.+|+++.+++.|.+++..|+-.+.+..-+..++.+.+..++.+..|
T Consensus 149 aA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~~ll~SpnL 228 (488)
T KOG4682|consen 149 AACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMKQLLGSPNL 228 (488)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHHHHhCCCCe
Confidence 99999999999999999999999999999999999999999999999999999988888888889999999999999999
Q ss_pred CC-C-HHHHHHHHHHHHhhC
Q psy12546 282 YA-P-EIDIFRAVVDWIKAN 299 (765)
Q Consensus 282 ~v-~-E~~l~~av~~Wi~~n 299 (765)
.+ . |.+|+..+..|+--.
T Consensus 229 fvmq~EfdLyttlk~WmfLq 248 (488)
T KOG4682|consen 229 FVMQVEFDLYTTLKKWMFLQ 248 (488)
T ss_pred EEEEeeehHHHHHHHHHHhh
Confidence 86 5 999999999998644
No 15
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.69 E-value=1.8e-16 Score=143.87 Aligned_cols=108 Identities=35% Similarity=0.614 Sum_probs=88.6
Q ss_pred HHHHHcCCCCccEEEEEC-CEEEEeehhHHHhcCHHHHHHhcCC-ccCCCCeeEEecCCCHHHHHHHHHHHhcCCccccC
Q psy12546 47 IGNLYLNDEFSDTVLIVQ-NEKISVHKVILAARSEYFRALLYGG-LCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRN 124 (765)
Q Consensus 47 l~~l~~~~~~sDv~~~v~-~~~~~aHr~ILaarS~yF~~lf~~~-~~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~ 124 (765)
|+++++++.++|++|.++ +++|+|||.||+++|+||++||.+. +.+.....|.+.++++++|+.+|+|+|++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~------ 74 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTG------ 74 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHS------
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCC------
Confidence 578999999999999999 8999999999999999999999988 66666678999999999995555555554
Q ss_pred cchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHh
Q psy12546 125 LKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSH 204 (765)
Q Consensus 125 ~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~ 204 (765)
.+.+. +.+++.+++.+|+
T Consensus 75 ------------------------------------------------------------~~~~~--~~~~~~~ll~lA~ 92 (111)
T PF00651_consen 75 ------------------------------------------------------------EIEIN--SDENVEELLELAD 92 (111)
T ss_dssp ------------------------------------------------------------EEEEE---TTTHHHHHHHHH
T ss_pred ------------------------------------------------------------cccCC--HHHHHHHHHHHHH
Confidence 44442 2778999999999
Q ss_pred hhCcHHHHHHHHHHHHhh
Q psy12546 205 KYGFQDLENSISDYLRVI 222 (765)
Q Consensus 205 ~~~l~~L~~~c~~~L~~~ 222 (765)
+|+++.|++.|.++|...
T Consensus 93 ~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 93 KLQIPELKKACEKFLQES 110 (111)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHhC
Confidence 999999999999998763
No 16
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.47 E-value=2.3e-13 Score=117.44 Aligned_cols=90 Identities=34% Similarity=0.585 Sum_probs=76.1
Q ss_pred cEEEEECCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHHHhhhc
Q psy12546 58 DTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKK 137 (765)
Q Consensus 58 Dv~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~~ 137 (765)
|++|.++|+.|++||.+|+++|+||++||.+++.++....+.+.++++++|+.+|+|+|++.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~------------------ 62 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGK------------------ 62 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCce------------------
Confidence 78999999999999999999999999999998887777889998999999955555555554
Q ss_pred cCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHH
Q psy12546 138 QNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSIS 216 (765)
Q Consensus 138 ~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~ 216 (765)
+.+ +..++.+++.+|++|++++|.+.|+
T Consensus 63 ------------------------------------------------~~~---~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 63 ------------------------------------------------LDL---PEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred ------------------------------------------------eec---CHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 433 2558899999999999999998874
No 17
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.43 E-value=6.4e-14 Score=125.39 Aligned_cols=102 Identities=32% Similarity=0.576 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHHHHhccCCCCC-CHHHHHHHHHHHHhhCCCccccc
Q psy12546 228 ACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSFYA-PEIDIFRAVVDWIKANSPEVEED 306 (765)
Q Consensus 228 v~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~~ll~~d~l~v-~E~~l~~av~~Wi~~n~~~~~~~ 306 (765)
|+.++.+|..|++.+|.+.|.+||..||.++..+++|.+|+.+.+..||+++.+++ +|.++|+++.+|++++...+.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~-- 78 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENRE-- 78 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHT--
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHH--
Confidence 68899999999999999999999999999999999999999999999999999987 599999999999999966565
Q ss_pred CCcccCCCCchhhhhccccCCCCCHHHHHHhcc
Q psy12546 307 GESSFRAPINMDEILTYVRLPLISLDELLTTVR 339 (765)
Q Consensus 307 ~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~ 339 (765)
+...+++++|||++|++++|.+.|+
T Consensus 79 --------~~~~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 79 --------EHLKELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp --------TTHHHHHCCCHHHCT-HHHHHHCCT
T ss_pred --------HHHHHHHHhCCcccCCHHHHHHHHC
Confidence 5899999999999999999988763
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.29 E-value=2.1e-11 Score=133.78 Aligned_cols=206 Identities=11% Similarity=-0.011 Sum_probs=126.7
Q ss_pred ccccCCcEEEEeeccCCc-----cCCCCeeeecCCCCeeeecccccCCCCCCCccEE-EEcCeeEEEcceeeeee-----
Q psy12546 440 LATSKMGTMVMQGEMKNA-----LLNGDVNNYDMENGYTRHTITEATSSTSCDNGIL-IKLGTQAIVNHIKLLLW----- 508 (765)
Q Consensus 440 ~a~~~~~~~viGG~~~~~-----~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vv-vl~g~iYiiGG~~~~~~----- 508 (765)
++...+.+||+||..... ...+++++|||.++.|...+. +++.+|..++++ +++|+||++||.....+
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~ 137 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFA 137 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHh
Confidence 444455699999986432 134689999999999997664 466666666665 78999999999753211
Q ss_pred -----cCCC-----------------ceeeEEEE-EEecCCCeEEEecccc-cccCceEEEEeecccEEEEEEEeecCCc
Q psy12546 509 -----DKDL-----------------RSYSYFIE-VSIDQKKWTRVIDYTR-FYCRSWQFLYFPTQVVQYIRVVGTNNTV 564 (765)
Q Consensus 509 -----~~~~-----------------~~y~y~v~-vs~~~~~W~~v~~~~~-~~~~~~~~~~f~~~~~ryI~ivg~~~~~ 564 (765)
+... ..+.-.|+ +++..++|+.+++|.. .++.. -.......|+|+||....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~-----~~~~~~~~iyv~GG~~~~ 212 (346)
T TIGR03547 138 DLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGS-----AIVHKGNKLLLINGEIKP 212 (346)
T ss_pred hHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCc-----eEEEECCEEEEEeeeeCC
Confidence 1000 00112344 4567789999999974 34432 112234799999998643
Q ss_pred ceeEEEEEEEEEe-ec--ccccccCCcccccCC----c-----ccccccceeEeeccccccc--cc-------------c
Q psy12546 565 NKVFHIVSFEIMY-TA--QTVQLSEEGIIIPKH----N-----VATRELSAKVVEGVSRSLS--SL-------------I 617 (765)
Q Consensus 565 ~~~~~~~~~e~~~-~~--~~~~~~~~~~~~p~~----n-----va~~~~~~~~~~g~~~~~~--~~-------------~ 617 (765)
. ....++++|. .+ +.|... .++..|.. . ++++...++|++|...... .. +
T Consensus 213 ~--~~~~~~~~y~~~~~~~~W~~~-~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 289 (346)
T TIGR03547 213 G--LRTAEVKQYLFTGGKLEWNKL-PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKA 289 (346)
T ss_pred C--ccchheEEEEecCCCceeeec-CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCce
Confidence 2 1223344443 22 357755 45554431 1 3456889999999642100 00 0
Q ss_pred c----CCcccccCCCCCcccccCCc-cEEEecCCceeeccEE
Q psy12546 618 D----GNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMR 654 (765)
Q Consensus 618 ~----gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~ 654 (765)
+ =|+....|....+.+....+ ++++--|++|+|||-.
T Consensus 290 ~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 290 WSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred eEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 0 03344469988888776544 5677889999999953
No 19
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.27 E-value=7.5e-12 Score=111.21 Aligned_cols=98 Identities=31% Similarity=0.492 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHHHHhccCCCCC-CHHHHHHHHHHHHhhCCCccccc
Q psy12546 228 ACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSFYA-PEIDIFRAVVDWIKANSPEVEED 306 (765)
Q Consensus 228 v~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~~ll~~d~l~v-~E~~l~~av~~Wi~~n~~~~~~~ 306 (765)
|+.++.+|..|++..|.+.|.+|+.+||..+.+.++|..|+.+.+..+|++|.+++ +|.++++++.+|++++...+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~--- 77 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERR--- 77 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHH---
Confidence 46788889999999999999999999999999999999999999999999999986 59999999999999995333
Q ss_pred CCcccCCCCchhhhhccccCCCCCHHHHHH
Q psy12546 307 GESSFRAPINMDEILTYVRLPLISLDELLT 336 (765)
Q Consensus 307 ~~~~~~~~~~~~~ll~~VR~~lls~~~L~~ 336 (765)
.....++++|||++|++++|..
T Consensus 78 --------~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 78 --------RHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred --------HHHHHHHHhCCCCCCCHHHHHh
Confidence 2678999999999999998765
No 20
>KOG2838|consensus
Probab=99.24 E-value=2.2e-11 Score=120.72 Aligned_cols=209 Identities=17% Similarity=0.258 Sum_probs=132.9
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEECCEEEEeehhHHHhcCHHHHHHhcCCccCCCC--eeEEecCCCHHHHHHHHHHH
Q psy12546 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQ--NEIELHDTNIVAFKCLLKYI 115 (765)
Q Consensus 38 ~~~~~l~~~l~~l~~~~~~sDv~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~--~~I~l~~v~~~~f~~lL~yl 115 (765)
..+..|..+++..++.....|+-++.....|||||++||+|||+|+.+....-.-... -.|...+++-++|+++|+|+
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999988654221111 13556689999999999999
Q ss_pred hcCCccccCcc---hhHHHHHhhhccCCC---------------------------------------------------
Q psy12546 116 YSGKLSFRNLK---DDVILDILGKKQNKG--------------------------------------------------- 141 (765)
Q Consensus 116 Ytg~l~~~~~~---~~~ll~i~~~~~~~~--------------------------------------------------- 141 (765)
|||..-..++. ++.+.+ ++..+.+.
T Consensus 192 ~tgEfgmEd~~fqn~diL~Q-L~edFG~~kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~ 270 (401)
T KOG2838|consen 192 ITGEFGMEDLGFQNSDILEQ-LCEDFGCFKKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIA 270 (401)
T ss_pred HhcccchhhcCCchHHHHHH-HHHhhCCchhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHH
Confidence 99988755544 333222 21111110
Q ss_pred CcchHhHHHhhhcCcccCCc---------ccccccc-ccHHHH-HHHHHhHhcCceecccCC-hhHHHHHHHHHhhhCcH
Q psy12546 142 TTLTQNFRALLYGGLCESNQ---------NEIELHD-TNIVAF-KCLLKYIYSGKLSFRNLK-DDVILDILGLSHKYGFQ 209 (765)
Q Consensus 142 ~~~S~yF~amf~~~~~Es~~---------~~i~l~~-v~~~~f-~~lL~yiYtg~i~l~~~~-~~~vl~ll~~A~~~~l~ 209 (765)
.+.|++||.++....+|..+ +.|.+.+ +=|.+| -.+|.++||+.+.++-.. -+.-+.-|.-|
T Consensus 271 aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSea------ 344 (401)
T KOG2838|consen 271 AARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEA------ 344 (401)
T ss_pred HhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHH------
Confidence 01399999999877665432 2444433 334444 356889999988754111 00000000000
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhccc
Q psy12546 210 DLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNA 255 (765)
Q Consensus 210 ~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~ 255 (765)
+.+...---..+....++.++..|..+.+..|.++|.+-|..++
T Consensus 345 --kAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~ac 388 (401)
T KOG2838|consen 345 --KAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKAC 388 (401)
T ss_pred --HHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00000000012234556777888888888888888888887765
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.17 E-value=1.3e-10 Score=126.27 Aligned_cols=193 Identities=12% Similarity=0.092 Sum_probs=125.0
Q ss_pred ccCCcEEEEeeccCCccCCCCeeeecCCCCee---eecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEE
Q psy12546 442 TSKMGTMVMQGEMKNALLNGDVNNYDMENGYT---RHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYF 518 (765)
Q Consensus 442 ~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W---~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~ 518 (765)
...+.+|++||.+.... .+++++||+.++.| +...+ +||.+|.++++++++++||++||.... . ....
T Consensus 70 ~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~GG~~~~------~-~~~~ 140 (323)
T TIGR03548 70 SVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIG-NLPFTFENGSACYKDGTLYVGGGNRNG------K-PSNK 140 (323)
T ss_pred EECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEEECCEEEEEeCcCCC------c-cCce
Confidence 34456899999876544 46899999999998 24455 599999999999999999999995311 0 1112
Q ss_pred EE-EEecCCCeEEEecccc-cccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCCccc---cc
Q psy12546 519 IE-VSIDQKKWTRVIDYTR-FYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEEGII---IP 592 (765)
Q Consensus 519 v~-vs~~~~~W~~v~~~~~-~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~---~p 592 (765)
++ +++..+.|+.+++|.. .++.. ........|+|+||.++.. ...+++|... +.|... .++. .|
T Consensus 141 v~~yd~~~~~W~~~~~~p~~~r~~~-----~~~~~~~~iYv~GG~~~~~----~~~~~~yd~~~~~W~~~-~~~~~~~~p 210 (323)
T TIGR03548 141 SYLFNLETQEWFELPDFPGEPRVQP-----VCVKLQNELYVFGGGSNIA----YTDGYKYSPKKNQWQKV-ADPTTDSEP 210 (323)
T ss_pred EEEEcCCCCCeeECCCCCCCCCCcc-----eEEEECCEEEEEcCCCCcc----ccceEEEecCCCeeEEC-CCCCCCCCc
Confidence 22 4567889999998864 32221 1112347899999987542 2345776543 558755 2221 23
Q ss_pred CC--c---ccccccceeEeecccccc----------------------------------cccccCCcccccCCCCCccc
Q psy12546 593 KH--N---VATRELSAKVVEGVSRSL----------------------------------SSLIDGNTVKYDWDSGYTCH 633 (765)
Q Consensus 593 ~~--n---va~~~~~~~~~~g~~~~~----------------------------------~~~~~gd~~~~~w~~g~~~~ 633 (765)
.. . ++..+.+.++++|..... +.++-=|+.+..|..-.+++
T Consensus 211 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 290 (323)
T TIGR03548 211 ISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP 290 (323)
T ss_pred eeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence 22 1 222367899999975321 12223366666798766665
Q ss_pred -ccCCc-cEEEecCCceeeccE
Q psy12546 634 -QLGSG-AILVQLGQPYMLDSM 653 (765)
Q Consensus 634 -~~~~~-~i~v~l~~~y~i~~~ 653 (765)
+.+.+ ++++--+++|++|+-
T Consensus 291 ~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 291 FFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred ccccCchheEEECCEEEEEecc
Confidence 34444 467777899999993
No 22
>KOG0511|consensus
Probab=99.10 E-value=1.3e-10 Score=120.26 Aligned_cols=226 Identities=17% Similarity=0.197 Sum_probs=161.0
Q ss_pred HHHHHHHHHHcCCC---CccEEEEE-CCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhc
Q psy12546 42 FLSEMIGNLYLNDE---FSDTVLIV-QNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYS 117 (765)
Q Consensus 42 ~l~~~l~~l~~~~~---~sDv~~~v-~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYt 117 (765)
....++..++++.- ..|++|.+ +|+.|-|||..|++||++|..-+..-+ .+..+|+-..+-+.+|..+|+|+|-
T Consensus 132 P~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl 209 (516)
T KOG0511|consen 132 PPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYL 209 (516)
T ss_pred CcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHH
Confidence 34556666666654 46888887 688899999999999998866553322 1334565557889999999999998
Q ss_pred CC---cc------------ccCcch--------hH-------------HHHHhhhc--------cC--------------
Q psy12546 118 GK---LS------------FRNLKD--------DV-------------ILDILGKK--------QN-------------- 139 (765)
Q Consensus 118 g~---l~------------~~~~~~--------~~-------------ll~i~~~~--------~~-------------- 139 (765)
+. .. +..++. +. ...+.+++ ..
T Consensus 210 ~~na~~~~qynallsi~~kF~~e~l~~~~~kdr~~~~sR~~k~~q~~~tq~~~~~~Li~~~~~~ykt~~dl~Ns~~~~fs 289 (516)
T KOG0511|consen 210 NTNAEWKDQYNALLSIEVKFSKEKLSLEISKDRMEDLSRICKVCQCESTQKIIEKELIHQRYAEYKTHRDLDNSPMKRFS 289 (516)
T ss_pred hhhhhhhhHHHHHHhhhhhccHHHhHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccchhhccChhheee
Confidence 71 11 110000 00 00011110 00
Q ss_pred -CC--------------C---cchHhHHHhhhcCcccCC-c---cccccccccHHHHHHHHHhHhcCceecccCChhHHH
Q psy12546 140 -KG--------------T---TLTQNFRALLYGGLCESN-Q---NEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVIL 197 (765)
Q Consensus 140 -~~--------------~---~~S~yF~amf~~~~~Es~-~---~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl 197 (765)
++ . ...+||+.||.|.+.|+. . ....++.....+.+..++|+|+++..+ .++-+.
T Consensus 290 l~~ayiql~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi---~~~~A~ 366 (516)
T KOG0511|consen 290 LQGAYIQLPEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDI---IFDVAS 366 (516)
T ss_pred eccccccccccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccc---hHHHHh
Confidence 00 0 018899999999999954 2 255667777888899999999999887 499999
Q ss_pred HHHHHHhhhCcH--H-HHHHHHHHHHh---hcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHH
Q psy12546 198 DILGLSHKYGFQ--D-LENSISDYLRV---ILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNG 271 (765)
Q Consensus 198 ~ll~~A~~~~l~--~-L~~~c~~~L~~---~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~ 271 (765)
+++..|+++.+. + |+.++.-.|.+ .++.-++.+++..|.......|.+.+..|+..|+..++..+++...-...
T Consensus 367 dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s 446 (516)
T KOG0511|consen 367 DVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTS 446 (516)
T ss_pred hHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhc
Confidence 999999999775 2 66666666644 45567899999999999999999999999999999998888887544333
Q ss_pred H
Q psy12546 272 L 272 (765)
Q Consensus 272 l 272 (765)
.
T Consensus 447 ~ 447 (516)
T KOG0511|consen 447 V 447 (516)
T ss_pred c
Confidence 3
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.08 E-value=1.4e-09 Score=119.43 Aligned_cols=201 Identities=7% Similarity=-0.102 Sum_probs=125.3
Q ss_pred ccCCcEEEEeeccCCccCCCCeeeecC--CCCeeeecccccCC-CCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEE
Q psy12546 442 TSKMGTMVMQGEMKNALLNGDVNNYDM--ENGYTRHTITEATS-STSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYF 518 (765)
Q Consensus 442 ~~~~~~~viGG~~~~~~l~~~v~~YD~--~~~~W~~~~~~~m~-~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~ 518 (765)
...+.+||+||... +++++||+ ..+.|...++ |+ .+|.++++++++++||++||.....-+.. ......
T Consensus 15 ~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~--~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~-~~~~~~ 86 (346)
T TIGR03547 15 IIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIAD--FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGS-PQVFDD 86 (346)
T ss_pred EECCEEEEEccccC-----CeeEEEECCCCCCCceECCC--CCCCCcccceEEEECCEEEEEeCCCCCCCCCc-ceeccc
Confidence 44566899999743 46899996 6789998775 88 68999999999999999999642100000 001112
Q ss_pred E-EEEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcce-------------------------------
Q psy12546 519 I-EVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNK------------------------------- 566 (765)
Q Consensus 519 v-~vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~------------------------------- 566 (765)
+ .+++..+.|+.+++. ..+.+.-. ...+...+.|+++||.++...
T Consensus 87 v~~Yd~~~~~W~~~~~~-~p~~~~~~--~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDTR-SPVGLLGA--SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred EEEEECCCCEEecCCCC-CCCcccce--eEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 3 246778899999842 22222100 011123579999999874310
Q ss_pred eEEEEEEEEEeec-ccccccCCcccc-cCCc--ccccccceeEeecccccc--cc-c--ccCCcccccCCCCCcccccCC
Q psy12546 567 VFHIVSFEIMYTA-QTVQLSEEGIII-PKHN--VATRELSAKVVEGVSRSL--SS-L--IDGNTVKYDWDSGYTCHQLGS 637 (765)
Q Consensus 567 ~~~~~~~e~~~~~-~~~~~~~~~~~~-p~~n--va~~~~~~~~~~g~~~~~--~~-~--~~gd~~~~~w~~g~~~~~~~~ 637 (765)
..-+..+|+|.+. ++|... .++.. |..+ ++....+.+|++|..... .. . .+=|+....|....+++..+.
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~ 242 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS 242 (346)
T ss_pred cCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC
Confidence 0012578998654 558876 45543 4444 345578999999974311 11 1 111344457998888876531
Q ss_pred -------c-cEEEecCCceeeccEE
Q psy12546 638 -------G-AILVQLGQPYMLDSMR 654 (765)
Q Consensus 638 -------~-~i~v~l~~~y~i~~~~ 654 (765)
+ .+++--|++|++||..
T Consensus 243 ~~~~~~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 243 SSQEGLAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred CccccccEEeeeEECCEEEEeecCC
Confidence 1 1567789999999964
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.04 E-value=1.7e-09 Score=120.02 Aligned_cols=206 Identities=10% Similarity=-0.034 Sum_probs=121.5
Q ss_pred ccccCCcEEEEeeccCC-----ccCCCCeeeecCCCCeeeecccccCCCCCCCccEEE-EcCeeEEEcceeeeeecC---
Q psy12546 440 LATSKMGTMVMQGEMKN-----ALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILI-KLGTQAIVNHIKLLLWDK--- 510 (765)
Q Consensus 440 ~a~~~~~~~viGG~~~~-----~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvv-l~g~iYiiGG~~~~~~~~--- 510 (765)
++...+.+||+||.... ....+++++||+.+++|...+. +++.+|..+++++ .+++||++||.....++.
T Consensus 80 ~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~ 158 (376)
T PRK14131 80 AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFE 158 (376)
T ss_pred EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHh
Confidence 34445568999998641 1224689999999999997764 3456666666666 899999999974311100
Q ss_pred ------------------------CCceeeEEEE-EEecCCCeEEEecccc-cccCceEEEEeecccEEEEEEEeecCCc
Q psy12546 511 ------------------------DLRSYSYFIE-VSIDQKKWTRVIDYTR-FYCRSWQFLYFPTQVVQYIRVVGTNNTV 564 (765)
Q Consensus 511 ------------------------~~~~y~y~v~-vs~~~~~W~~v~~~~~-~~~~~~~~~~f~~~~~ryI~ivg~~~~~ 564 (765)
....+...++ +++..+.|+.++++.. .++.. -.......|+++||....
T Consensus 159 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~-----a~v~~~~~iYv~GG~~~~ 233 (376)
T PRK14131 159 DLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGS-----AVVIKGNKLWLINGEIKP 233 (376)
T ss_pred hhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcc-----eEEEECCEEEEEeeeECC
Confidence 0000112233 5677889999998875 33321 112234689999997432
Q ss_pred ceeEEEEEEEEE-ee--cccccccCCcccccCC-----c-----ccccccceeEeeccccc--cccc-------------
Q psy12546 565 NKVFHIVSFEIM-YT--AQTVQLSEEGIIIPKH-----N-----VATRELSAKVVEGVSRS--LSSL------------- 616 (765)
Q Consensus 565 ~~~~~~~~~e~~-~~--~~~~~~~~~~~~~p~~-----n-----va~~~~~~~~~~g~~~~--~~~~------------- 616 (765)
.. ....+..+ ++ ++.|... .++..|.. . .+.+.++.+|++|.... +...
T Consensus 234 ~~--~~~~~~~~~~~~~~~~W~~~-~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 310 (376)
T PRK14131 234 GL--RTDAVKQGKFTGNNLKWQKL-PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKK 310 (376)
T ss_pred Cc--CChhheEEEecCCCcceeec-CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcc
Confidence 11 01111111 22 2457654 33433321 1 34457889999996421 0000
Q ss_pred ---cc-CCcccccCCCCCcccccCCc-cEEEecCCceeeccEE
Q psy12546 617 ---ID-GNTVKYDWDSGYTCHQLGSG-AILVQLGQPYMLDSMR 654 (765)
Q Consensus 617 ---~~-gd~~~~~w~~g~~~~~~~~~-~i~v~l~~~y~i~~~~ 654 (765)
.. -|+.+..|+.....++.+.+ ++++--|.+|++||-.
T Consensus 311 ~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 311 SWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred eeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 00 14555679988888877555 4666778999999954
No 25
>PLN02153 epithiospecifier protein
Probab=99.02 E-value=6.3e-09 Score=113.97 Aligned_cols=232 Identities=14% Similarity=0.096 Sum_probs=136.4
Q ss_pred cCCcEEEEeeccCC-ccCCCCeeeecCCCCeeeecccccC-CCCCC---CccEEEEcCeeEEEcceeeeeecCCCceeeE
Q psy12546 443 SKMGTMVMQGEMKN-ALLNGDVNNYDMENGYTRHTITEAT-SSTSC---DNGILIKLGTQAIVNHIKLLLWDKDLRSYSY 517 (765)
Q Consensus 443 ~~~~~~viGG~~~~-~~l~~~v~~YD~~~~~W~~~~~~~m-~~~R~---~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y 517 (765)
....+||+||.... ....+++++||+.++.|...++ | ..+|. .+++++++++||++||.... ..++
T Consensus 31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~------~~~~- 101 (341)
T PLN02153 31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPA--NGDVPRISCLGVRMVAVGTKLYIFGGRDEK------REFS- 101 (341)
T ss_pred ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCc--cCCCCCCccCceEEEEECCEEEEECCCCCC------CccC-
Confidence 34468999998542 3345789999999999996654 4 34443 68899999999999996421 1111
Q ss_pred EEE-EEecCCCeEEEecccc---cccCceEEEEeecccEEEEEEEeecCCcce---eEEEEEEEEEeec-ccccccCC-c
Q psy12546 518 FIE-VSIDQKKWTRVIDYTR---FYCRSWQFLYFPTQVVQYIRVVGTNNTVNK---VFHIVSFEIMYTA-QTVQLSEE-G 588 (765)
Q Consensus 518 ~v~-vs~~~~~W~~v~~~~~---~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~---~~~~~~~e~~~~~-~~~~~~~~-~ 588 (765)
.++ +++..+.|+.+++|.. +..|..... ......|+|.||.+.... .-.+..+++|... ++|...+. +
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~---~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSM---ASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEE---EEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 222 3567789999998732 333432211 122368999999864321 1123467887654 45875521 1
Q ss_pred -ccccCC--cccccccceeEeeccccc----------ccccccCCcccccCCCCCcc---cccCCc-cEEEecCCceeec
Q psy12546 589 -IIIPKH--NVATRELSAKVVEGVSRS----------LSSLIDGNTVKYDWDSGYTC---HQLGSG-AILVQLGQPYMLD 651 (765)
Q Consensus 589 -~~~p~~--nva~~~~~~~~~~g~~~~----------~~~~~~gd~~~~~w~~g~~~---~~~~~~-~i~v~l~~~y~i~ 651 (765)
...|+. .+++.+.+.++++|...+ .+.+.-=|+.+..|..-.+. +..+.+ +.++--++.|++|
T Consensus 179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~G 258 (341)
T PLN02153 179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFG 258 (341)
T ss_pred CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEEC
Confidence 113333 345668889999885321 01111115666679876543 233333 3555568999999
Q ss_pred cEEEEeeecC------C----CeeeEEEEEEecCCcceeeeeccC-ccccceE
Q psy12546 652 SMRLLLWDCD------D----RSYSYLVDVSINLWDWEIVADHTR-DLCRSWQ 693 (765)
Q Consensus 652 ~~~~~~w~~~------~----~~y~y~i~vs~d~~~w~~v~~~~~-~~~~~~~ 693 (765)
|.. |+.. . -.|. ...+...|+.+.+... ...|.|.
T Consensus 259 G~~---~~~~~~~~~~~~~~n~v~~----~d~~~~~W~~~~~~~~~~~pr~~~ 304 (341)
T PLN02153 259 GEV---WPDLKGHLGPGTLSNEGYA----LDTETLVWEKLGECGEPAMPRGWT 304 (341)
T ss_pred ccc---CCccccccccccccccEEE----EEcCccEEEeccCCCCCCCCCccc
Confidence 953 3210 1 1232 2345678999976433 3455553
No 26
>PLN02193 nitrile-specifier protein
Probab=99.01 E-value=1.3e-08 Score=116.08 Aligned_cols=264 Identities=11% Similarity=0.075 Sum_probs=148.8
Q ss_pred ccCCcEEEEeeccCC-ccCCCCeeeecCCCCeeeecccc-cCCC-CCCCccEEEEcCeeEEEcceeeeeecCCCceeeEE
Q psy12546 442 TSKMGTMVMQGEMKN-ALLNGDVNNYDMENGYTRHTITE-ATSS-TSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYF 518 (765)
Q Consensus 442 ~~~~~~~viGG~~~~-~~l~~~v~~YD~~~~~W~~~~~~-~m~~-~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~ 518 (765)
...+.+||+||.... ....+++++||+.+++|...... .+|. +|..+++++++++||++||..... .++-.
T Consensus 173 ~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~------~~ndv 246 (470)
T PLN02193 173 QVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR------QYNGF 246 (470)
T ss_pred EECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC------CCccE
Confidence 334458999998542 23446899999999999964431 1233 356788999999999999964321 11111
Q ss_pred EEEEecCCCeEEEecccc-cccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEee-cccccccCC--cccccCC
Q psy12546 519 IEVSIDQKKWTRVIDYTR-FYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYT-AQTVQLSEE--GIIIPKH 594 (765)
Q Consensus 519 v~vs~~~~~W~~v~~~~~-~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~-~~~~~~~~~--~~~~p~~ 594 (765)
-.+++..+.|++++++.. +..|....+ ....+.|+|.||.++.+. +..+++|.. +++|..... ++..|+.
T Consensus 247 ~~yD~~t~~W~~l~~~~~~P~~R~~h~~---~~~~~~iYv~GG~~~~~~---~~~~~~yd~~t~~W~~~~~~~~~~~~R~ 320 (470)
T PLN02193 247 YSFDTTTNEWKLLTPVEEGPTPRSFHSM---AADEENVYVFGGVSATAR---LKTLDSYNIVDKKWFHCSTPGDSFSIRG 320 (470)
T ss_pred EEEECCCCEEEEcCcCCCCCCCccceEE---EEECCEEEEECCCCCCCC---cceEEEEECCCCEEEeCCCCCCCCCCCC
Confidence 134577889999998732 222322111 123478999999987553 335677644 345765421 2333444
Q ss_pred c--ccccccceeEeecccccc-cccccCCcccccCCCCCcc---cccCCc-cEEEecCCceeeccEEEE---eeecCCCe
Q psy12546 595 N--VATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTC---HQLGSG-AILVQLGQPYMLDSMRLL---LWDCDDRS 664 (765)
Q Consensus 595 n--va~~~~~~~~~~g~~~~~-~~~~~gd~~~~~w~~g~~~---~~~~~~-~i~v~l~~~y~i~~~~~~---~w~~~~~~ 664 (765)
+ ++.+..+.++++|...+. +.+.-=|+.+..|..-.++ +..+.+ +.++.-++.|++|+-.-. ..+.....
T Consensus 321 ~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 321 GAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred CcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccce
Confidence 3 344578899999864321 2222226667779876554 334444 455667899999996410 00000011
Q ss_pred eeEEEEEEecCCcceeeeecc----CccccceEEEE--eecCCEEEEEEEeccCCcceeE
Q psy12546 665 YSYLVDVSINLWDWEIVADHT----RDLCRSWQSIS--FSRRPVVFVRIIGTHNTMNEVF 718 (765)
Q Consensus 665 y~y~i~vs~d~~~w~~v~~~~----~~~~~~~~~~~--f~~~~~~~ir~~~~~~~~~~~~ 718 (765)
++=--..-.+...|+.+.... ....|+|...+ +....=++| |.|-.+..|+.|
T Consensus 401 ~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~-~fGG~~~~~~~~ 459 (470)
T PLN02193 401 TDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLV-MHGGKAPTNDRF 459 (470)
T ss_pred eccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEE-EEcCCCCccccc
Confidence 110012224566899887643 34667776432 221222233 666665444443
No 27
>PLN02153 epithiospecifier protein
Probab=98.99 E-value=3.8e-09 Score=115.74 Aligned_cols=204 Identities=14% Similarity=0.002 Sum_probs=122.7
Q ss_pred cCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccC-----CCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeE
Q psy12546 443 SKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEAT-----SSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSY 517 (765)
Q Consensus 443 ~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m-----~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y 517 (765)
....+||+||.+.... .+++++||+.+++|....+ | |.+|..|++++.+++||++||............+ .
T Consensus 84 ~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~--~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~ 159 (341)
T PLN02153 84 VGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTK--LDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF-R 159 (341)
T ss_pred ECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEecc--CCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc-c
Confidence 3446899999876544 3689999999999997654 5 7899999999999999999996421000001111 2
Q ss_pred EEE-EEecCCCeEEEeccccc-ccCceEEEEeecccEEEEEEEeecCCc-----ceeEEEEEEEEEeec-ccccccC-Cc
Q psy12546 518 FIE-VSIDQKKWTRVIDYTRF-YCRSWQFLYFPTQVVQYIRVVGTNNTV-----NKVFHIVSFEIMYTA-QTVQLSE-EG 588 (765)
Q Consensus 518 ~v~-vs~~~~~W~~v~~~~~~-~~~~~~~~~f~~~~~ryI~ivg~~~~~-----~~~~~~~~~e~~~~~-~~~~~~~-~~ 588 (765)
.++ +++..+.|+.++++... ..|+-.. .....+.|+|+||.++. ...+.+..+++|... +.|.... .+
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~---~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAG---FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcce---EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 233 46777899999887532 1222111 11234689999887532 122334568887543 4577552 11
Q ss_pred -ccccCCc--ccccccceeEeeccccc-------ccccc----cCCcccccCCCCCcc-----cccC--CccEEEec-CC
Q psy12546 589 -IIIPKHN--VATRELSAKVVEGVSRS-------LSSLI----DGNTVKYDWDSGYTC-----HQLG--SGAILVQL-GQ 646 (765)
Q Consensus 589 -~~~p~~n--va~~~~~~~~~~g~~~~-------~~~~~----~gd~~~~~w~~g~~~-----~~~~--~~~i~v~l-~~ 646 (765)
+..|+.. .+++....++++|.... ...+. -=|+.+-.|+.-.++ +... .+.+.|.. ++
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~ 316 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNG 316 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcce
Confidence 3445444 34557889999996321 12222 125556669865432 2111 12355544 37
Q ss_pred ceeeccE
Q psy12546 647 PYMLDSM 653 (765)
Q Consensus 647 ~y~i~~~ 653 (765)
+|+.||.
T Consensus 317 ~~~~gG~ 323 (341)
T PLN02153 317 LLMHGGK 323 (341)
T ss_pred EEEEcCc
Confidence 9999986
No 28
>KOG2075|consensus
Probab=98.94 E-value=6.1e-09 Score=111.84 Aligned_cols=207 Identities=21% Similarity=0.354 Sum_probs=154.4
Q ss_pred cchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhh
Q psy12546 143 TLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVI 222 (765)
Q Consensus 143 ~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~ 222 (765)
..|+.|.+||++++.|+...+|.++|+.+.+|..+|+|||++ ...
T Consensus 140 ~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsd-----------------------------------ev~ 184 (521)
T KOG2075|consen 140 DGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSD-----------------------------------EVK 184 (521)
T ss_pred cchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcc-----------------------------------hhh
Confidence 459999999999999998999999999999999999999994 778
Q ss_pred cChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHHHHhccCCCCCCHHHHHHHHHHHHhhCCCc
Q psy12546 223 LTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSFYAPEIDIFRAVVDWIKANSPE 302 (765)
Q Consensus 223 l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~~ll~~d~l~v~E~~l~~av~~Wi~~n~~~ 302 (765)
+..+|++.++.+|++|..+.|.+.|.+||..+.. +...+..|.++..+ ..|.++.+.|+.=+..++++
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~-----------~~naf~~L~q~A~l-f~ep~Li~~c~e~id~~~~~ 252 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNLM-----------ADNAFLELFQRAKL-FDEPSLISICLEVIDKSFED 252 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHh-hcCHHHHHHHHHHhhhHHHh
Confidence 8999999999999999999999999999998742 23333333332111 13558888888888877655
Q ss_pred ccccCCcccCCCCchhhhhccccCCCCC--HHHHHHhcccCCC-CChhHHHHHHHhhcccccccccCCCcccccCCcccc
Q psy12546 303 VEEDGESSFRAPINMDEILTYVRLPLIS--LDELLTTVRSSGI-ISADKILDAIELQTNDKVQYRANSPEVEEDGESSFR 379 (765)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~VR~~lls--~~~L~~~v~~~~l-~~~~~i~~ai~~~~~~~~~f~~~~~~~~~~~~~~~R 379 (765)
-...+.++ . +. .+.+.++++.+.+ +.+..+++|...|...... .....-+++. +
T Consensus 253 al~~EGf~-----------d------id~~~dt~~evl~r~~l~~~e~~lfeA~lkw~~~e~~----rs~~~~~~~~--~ 309 (521)
T KOG2075|consen 253 ALTPEGFC-----------D------IDSTRDTYEEVLRRDTLEAREFRLFEAALKWAEAECQ----RSGGPVNGQN--K 309 (521)
T ss_pred hhCcccee-----------e------hhhHHHHHHHHHhhcccchhHHHHHHHHHhhccCcch----hhcCCCCccc--h
Confidence 44222221 1 33 5678888888888 5666788888877654321 1122222222 2
Q ss_pred cccccccccceecccccCccceeeeeeccccccchhhHhHh
Q psy12546 380 APINMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAI 420 (765)
Q Consensus 380 ~~~~~~~ll~~VRlpli~~~~l~~~v~~~~l~~~~~l~ea~ 420 (765)
+..+.+.+..+|||+|..+.+...+++.++......++-+
T Consensus 310 -~~vl~~~l~lirfp~m~~Eefa~~~e~sgIl~d~e~~~~F 349 (521)
T KOG2075|consen 310 -RKVLGRALSLIRFPFMNIEEFARGVEQSGILTDREPLKLF 349 (521)
T ss_pred -hhhhhheeeeecccccchhhhccCccccCCccccchHhhh
Confidence 2378899999999999999999999999998887655555
No 29
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.92 E-value=4.7e-09 Score=116.52 Aligned_cols=146 Identities=14% Similarity=-0.006 Sum_probs=95.1
Q ss_pred CCCeeeecCCCCeeeecccccCCC-CCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEEEEecCCCeEEEecccccc
Q psy12546 460 NGDVNNYDMENGYTRHTITEATSS-TSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFY 538 (765)
Q Consensus 460 ~~~v~~YD~~~~~W~~~~~~~m~~-~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~~~~ 538 (765)
.+++++|||.+|.|....+ |+. +|.++++++.+++||++||.... .......|..+.+++.+.|..+++|...+
T Consensus 188 ~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~~~~~iYv~GG~~~~---~~~~~~~~~~~~~~~~~~W~~~~~~p~~~ 262 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVIKGNKLWLINGEIKP---GLRTDAVKQGKFTGNNLKWQKLPDLPPAP 262 (376)
T ss_pred CceEEEEECCCCeeeECCc--CCCCCCCcceEEEECCEEEEEeeeECC---CcCChhheEEEecCCCcceeecCCCCCCC
Confidence 3679999999999997654 885 78899999999999999996321 00112234445567888999999997654
Q ss_pred cCceEEE---EeecccEEEEEEEeecCCcce--------------eEEEEEEEEEeec-ccccccCCcccccCCcccc--
Q psy12546 539 CRSWQFL---YFPTQVVQYIRVVGTNNTVNK--------------VFHIVSFEIMYTA-QTVQLSEEGIIIPKHNVAT-- 598 (765)
Q Consensus 539 ~~~~~~~---~f~~~~~ryI~ivg~~~~~~~--------------~~~~~~~e~~~~~-~~~~~~~~~~~~p~~nva~-- 598 (765)
...-+.- .+......-|+|+||.+.... .-.+.++|+|... +.|... .++..|....+.
T Consensus 263 ~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~-~~lp~~r~~~~av~ 341 (376)
T PRK14131 263 GGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV-GELPQGLAYGVSVS 341 (376)
T ss_pred cCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc-CcCCCCccceEEEE
Confidence 2111110 112223467999999874321 0123467887653 558755 456666555433
Q ss_pred cccceeEeecccc
Q psy12546 599 RELSAKVVEGVSR 611 (765)
Q Consensus 599 ~~~~~~~~~g~~~ 611 (765)
+....++++|...
T Consensus 342 ~~~~iyv~GG~~~ 354 (376)
T PRK14131 342 WNNGVLLIGGETA 354 (376)
T ss_pred eCCEEEEEcCCCC
Confidence 3788999999643
No 30
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.89 E-value=2.2e-08 Score=108.78 Aligned_cols=197 Identities=9% Similarity=-0.081 Sum_probs=120.0
Q ss_pred cccCCcEEEEeeccCCcc---------CCCCeeeec-CCCC-eeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeec
Q psy12546 441 ATSKMGTMVMQGEMKNAL---------LNGDVNNYD-MENG-YTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWD 509 (765)
Q Consensus 441 a~~~~~~~viGG~~~~~~---------l~~~v~~YD-~~~~-~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~ 509 (765)
+...+.+||+||.+.... ...++..|+ +..+ .|....+ |+.+|.+++.|+++++||++||....
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~--lp~~r~~~~~~~~~~~lyviGG~~~~--- 84 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ--LPYEAAYGASVSVENGIYYIGGSNSS--- 84 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc--CCccccceEEEEECCEEEEEcCCCCC---
Confidence 344556899999875421 123677674 4433 7886554 99999999999999999999996421
Q ss_pred CCCceeeEEEEEEecCCCe----EEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccc
Q psy12546 510 KDLRSYSYFIEVSIDQKKW----TRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQL 584 (765)
Q Consensus 510 ~~~~~y~y~v~vs~~~~~W----~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~ 584 (765)
...+....++++.+.| ..+++|...++.. -.......|+++||...... +..+++|... +.|..
T Consensus 85 ---~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-----~~~~~~~~iYv~GG~~~~~~---~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 85 ---ERFSSVYRITLDESKEELICETIGNLPFTFENG-----SACYKDGTLYVGGGNRNGKP---SNKSYLFNLETQEWFE 153 (323)
T ss_pred ---CCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-----eEEEECCEEEEEeCcCCCcc---CceEEEEcCCCCCeeE
Confidence 1111111234556665 7888887665432 11123479999999753322 3567887653 55876
Q ss_pred cCCcccc-cCCcc--cccccceeEeecccccc-cccccCCcccccCCCCCcccc---cC--Cc--cEEEecCCceeeccE
Q psy12546 585 SEEGIII-PKHNV--ATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQ---LG--SG--AILVQLGQPYMLDSM 653 (765)
Q Consensus 585 ~~~~~~~-p~~nv--a~~~~~~~~~~g~~~~~-~~~~~gd~~~~~w~~g~~~~~---~~--~~--~i~v~l~~~y~i~~~ 653 (765)
. .++.. |+... ++...+.+|++|..... +...-=|+.+..|+.-.++.+ +. .+ ++++.-+++|++||.
T Consensus 154 ~-~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 154 L-PDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF 232 (323)
T ss_pred C-CCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCc
Confidence 5 33332 33333 34578899999964311 111122666667987765432 21 12 355656899999996
Q ss_pred E
Q psy12546 654 R 654 (765)
Q Consensus 654 ~ 654 (765)
.
T Consensus 233 ~ 233 (323)
T TIGR03548 233 N 233 (323)
T ss_pred C
Confidence 4
No 31
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=98.85 E-value=1.7e-08 Score=93.40 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=80.6
Q ss_pred ccccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCC--CeeeEEEEEEecCCcceeeeec--cCcc
Q psy12546 613 LSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDD--RSYSYLVDVSINLWDWEIVADH--TRDL 688 (765)
Q Consensus 613 ~~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~--~~y~y~i~vs~d~~~w~~v~~~--~~~~ 688 (765)
...++|||..+ .|.+.+ ...+.+|.|+||+++.|++|++.....+. +..+|.|++|.|+.+|+.+.+. ....
T Consensus 17 ~~~~~Dg~~~t-~W~~~~---~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~dg~~w~~~~~~~~~~~~ 92 (129)
T PF00754_consen 17 ASNAFDGDPST-AWCSNW---DDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSNDGSNWTTVASQFYGNTN 92 (129)
T ss_dssp GGGGGSSSTTS-SEEESS---SSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESSSSSEEEEEETEEEESS
T ss_pred HHheEeCCCCC-EEECCC---CCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeecccccccccccceeeccC
Confidence 57789999655 798875 33444799999999999999985554333 6778999999999999999984 3334
Q ss_pred ccceEE-EEeecCCEEEEEEEec-cCCcceeEEEEe
Q psy12546 689 CRSWQS-ISFSRRPVVFVRIIGT-HNTMNEVFHCVH 722 (765)
Q Consensus 689 ~~~~~~-~~f~~~~~~~ir~~~~-~~~~~~~~~~~~ 722 (765)
....+. ..++|..+|||||..+ .++.+..+++..
T Consensus 93 ~~~~~~~~~~~~~~~ryiri~~~~~~~~~~~~~i~E 128 (129)
T PF00754_consen 93 SGSVVTISFFPPVKARYIRITVTSWNGNNGWVSIAE 128 (129)
T ss_dssp SSSSEEEEEEEEEEEEEEEEEEEEEESCSSEEEEEE
T ss_pred CCceEEEEeCCCeEEEEEEEEEEEECCCCceEEEEe
Confidence 445555 4555789999999998 466666666544
No 32
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=98.78 E-value=5.7e-08 Score=92.18 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=80.5
Q ss_pred ccccccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeec----CCCeeeEEEEEEecCCcceeeeecc-
Q psy12546 611 RSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDC----DDRSYSYLVDVSINLWDWEIVADHT- 685 (765)
Q Consensus 611 ~~~~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~----~~~~y~y~i~vs~d~~~w~~v~~~~- 685 (765)
..+..+ |||..+ .|..+.. -.+.+|.|+||+++.|++|.+ .|.. ..+...|.|++|.|+.+|+.+.+..
T Consensus 24 ~~~~~~-dg~~~t-~W~~~~~---~~~~wi~vDL~~~~~i~~v~i-~~~~~~~~~~~~~~~~i~~s~dg~~W~~~~~~~~ 97 (143)
T cd00057 24 WEASRA-RLNSDN-AWTPAVN---DPPQWLQVDLGKTRRVTGIQT-QGRKGGGSSEWVTSYKVQYSLDGETWTTYKDKGE 97 (143)
T ss_pred CCcCee-ecCCCC-cccCCCC---CCCceEEEECCCCEEEEEEEE-ccCCCCCccCeeEEEEEEEECCCCCEeEEEcCCc
Confidence 445566 999865 7998763 123479999999999999998 5544 3467789999999999999998721
Q ss_pred ------CccccceEEEEee-cCCEEEEEEEeccCCcceeEEEEeeeecC
Q psy12546 686 ------RDLCRSWQSISFS-RRPVVFVRIIGTHNTMNEVFHCVHFECPD 727 (765)
Q Consensus 686 ------~~~~~~~~~~~f~-~~~~~~ir~~~~~~~~~~~~~~~~~e~~~ 727 (765)
+..+...+.+.|+ |..+|||||+.+.... .+.+ .||+++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~pv~aRyvRl~~~~~~~--~~~l-e~evyG 143 (143)
T cd00057 98 EKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNG--NISL-RLELYG 143 (143)
T ss_pred EEEEeCCcCCCeEEEEeCCCCEEEEEEEEEEeecCC--ccEE-EEEEcC
Confidence 2233357888898 4889999999887554 4555 888763
No 33
>KOG0783|consensus
Probab=98.73 E-value=1.1e-08 Score=115.12 Aligned_cols=133 Identities=23% Similarity=0.351 Sum_probs=92.8
Q ss_pred CCccEEEEE-CCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhc-CCcccc--CcchhHH
Q psy12546 55 EFSDTVLIV-QNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYS-GKLSFR--NLKDDVI 130 (765)
Q Consensus 55 ~~sDv~~~v-~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYt-g~l~~~--~~~~~~l 130 (765)
+.-|+.+++ +|+.++|||++|++|++||..||..-|.|+..-.+..-.+..+.|+.+|+|+|+ ++..+- ..+++++
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 344666666 899999999999999999999999999998875555556679999999999994 444321 1122322
Q ss_pred HH---HhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhC
Q psy12546 131 LD---ILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207 (765)
Q Consensus 131 l~---i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~ 207 (765)
-+ |+++.. -..|+.++. ..+++. ++..++-.+|..|-+|.
T Consensus 789 ~~il~iaDqll------------------------i~~Lk~Ice---~~ll~k----------l~lk~~~~llefaamY~ 831 (1267)
T KOG0783|consen 789 FEILSIADQLL------------------------ILELKSICE---QSLLRK----------LNLKTLPTLLEFAAMYH 831 (1267)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHH---HHHHhH----------hcccchHHHHHHHHHhh
Confidence 22 222110 112233333 333332 24778899999999999
Q ss_pred cHHHHHHHHHHHHhhcC
Q psy12546 208 FQDLENSISDYLRVILT 224 (765)
Q Consensus 208 l~~L~~~c~~~L~~~l~ 224 (765)
...|+..|.+|+..++.
T Consensus 832 ak~L~~~C~dfic~N~~ 848 (1267)
T KOG0783|consen 832 AKELYSRCIDFICHNIE 848 (1267)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 99999999999987554
No 34
>PLN02193 nitrile-specifier protein
Probab=98.62 E-value=1.4e-07 Score=107.72 Aligned_cols=151 Identities=11% Similarity=-0.006 Sum_probs=98.5
Q ss_pred cCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccC---CCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEE
Q psy12546 443 SKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEAT---SSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFI 519 (765)
Q Consensus 443 ~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m---~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v 519 (765)
..+.+||+||.+.... .+++++||+.+++|....+ | |.+|..|++++.+++||++||.....+ ...+
T Consensus 227 ~~~~lYvfGG~~~~~~-~ndv~~yD~~t~~W~~l~~--~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~-------~~~~ 296 (470)
T PLN02193 227 IGSTLYVFGGRDASRQ-YNGFYSFDTTTNEWKLLTP--VEEGPTPRSFHSMAADEENVYVFGGVSATAR-------LKTL 296 (470)
T ss_pred ECCEEEEECCCCCCCC-CccEEEEECCCCEEEEcCc--CCCCCCCccceEEEEECCEEEEECCCCCCCC-------cceE
Confidence 3445899999876543 4789999999999997554 6 789999999999999999999643211 1112
Q ss_pred -EEEecCCCeEEEecccc-cccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeec-ccccccCC--cccccCC
Q psy12546 520 -EVSIDQKKWTRVIDYTR-FYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTA-QTVQLSEE--GIIIPKH 594 (765)
Q Consensus 520 -~vs~~~~~W~~v~~~~~-~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~-~~~~~~~~--~~~~p~~ 594 (765)
.+++..+.|+.+++... ...|....+ ....+.|+++||.++.. +..+++|... +.|+.... ....|+.
T Consensus 297 ~~yd~~t~~W~~~~~~~~~~~~R~~~~~---~~~~gkiyviGG~~g~~----~~dv~~yD~~t~~W~~~~~~g~~P~~R~ 369 (470)
T PLN02193 297 DSYNIVDKKWFHCSTPGDSFSIRGGAGL---EVVQGKVWVVYGFNGCE----VDDVHYYDPVQDKWTQVETFGVRPSERS 369 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCCCCcEE---EEECCcEEEEECCCCCc----cCceEEEECCCCEEEEeccCCCCCCCcc
Confidence 24567789999875211 111221111 11236799999987642 3567887553 45775521 1234444
Q ss_pred c--ccccccceeEeeccc
Q psy12546 595 N--VATRELSAKVVEGVS 610 (765)
Q Consensus 595 n--va~~~~~~~~~~g~~ 610 (765)
. .+++....++++|..
T Consensus 370 ~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 370 VFASAAVGKHIVIFGGEI 387 (470)
T ss_pred eeEEEEECCEEEEECCcc
Confidence 3 445578899999974
No 35
>smart00612 Kelch Kelch domain.
Probab=98.02 E-value=7.3e-06 Score=61.40 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=38.7
Q ss_pred EEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcC
Q psy12546 447 TMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLG 495 (765)
Q Consensus 447 ~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g 495 (765)
+|++||.+... ..+++++|||.++.|...++ |+.+|..+++++++|
T Consensus 2 iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQ-RLKSVEVYDPETNKWTPLPS--MPTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCc-eeeeEEEECCCCCeEccCCC--CCCccccceEEEeCC
Confidence 79999987633 34789999999999997664 999999999998875
No 36
>KOG4693|consensus
Probab=98.02 E-value=4.5e-05 Score=76.62 Aligned_cols=196 Identities=11% Similarity=0.136 Sum_probs=121.2
Q ss_pred cEEEEeeccCCccCCCCeeeecCCCCeeeec-ccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE-EEe
Q psy12546 446 GTMVMQGEMKNALLNGDVNNYDMENGYTRHT-ITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE-VSI 523 (765)
Q Consensus 446 ~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~-~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~-vs~ 523 (765)
.+|+-||++.....-+-..+|||+++.|... ++--.|-.|..|+++|.++.+||.||..- +-..++-.+. ...
T Consensus 90 ~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~-----~a~~FS~d~h~ld~ 164 (392)
T KOG4693|consen 90 KAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE-----DAQRFSQDTHVLDF 164 (392)
T ss_pred eEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHH-----HHHhhhccceeEec
Confidence 4789999987654445678999999999852 22125668999999999999999999532 2223333333 345
Q ss_pred cCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEEEE------EEEEe-ecccccccCCcccccCC--
Q psy12546 524 DQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVS------FEIMY-TAQTVQLSEEGIIIPKH-- 594 (765)
Q Consensus 524 ~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~------~e~~~-~~~~~~~~~~~~~~p~~-- 594 (765)
+.-.|..+-. +..-..|.+.|-........+|-||+....-.||..+ +-+.. .+..|.-.+.--..|.+
T Consensus 165 ~TmtWr~~~T--kg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 165 ATMTWREMHT--KGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred cceeeeehhc--cCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 5668998854 3444677776655566789999999998888887532 11111 12225433211222322
Q ss_pred ccccc--ccceeEeecccccccccccC--------CcccccCCC-----CCcccccCCccEEEecCCceeeccE
Q psy12546 595 NVATR--ELSAKVVEGVSRSLSSLIDG--------NTVKYDWDS-----GYTCHQLGSGAILVQLGQPYMLDSM 653 (765)
Q Consensus 595 nva~~--~~~~~~~~g~~~~~~~~~~g--------d~~~~~w~~-----g~~~~~~~~~~i~v~l~~~y~i~~~ 653 (765)
...+. ....++.+|- |.+||- |+.+.-|.- .|+|.- +....+|--|+.|..|+-
T Consensus 243 SHS~fvYng~~Y~FGGY----ng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aR-RRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 243 SHSTFVYNGKMYMFGGY----NGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSAR-RRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred ccceEEEcceEEEeccc----chhhhhhhcceeecccccchheeeeccCCCCCcc-cceeEEEECCEEEEecCC
Confidence 22222 5667777775 444554 666666762 233322 122366667888887774
No 37
>KOG4682|consensus
Probab=98.01 E-value=1.9e-05 Score=83.45 Aligned_cols=253 Identities=16% Similarity=0.153 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhcCCccccCcchhHHHHHhhhccCCC---CcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHh
Q psy12546 106 VAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKG---TTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIY 182 (765)
Q Consensus 106 ~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~~~~~~---~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiY 182 (765)
..+...-+|+|-. +..+.++.|+++.+++.+=.-| ..-|+||++||.|.|+|+++..|.|+-.++..=..
T Consensus 50 ~~ll~t~kyiyq~-lf~q~enSDv~l~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~------ 122 (488)
T KOG4682|consen 50 KKLLQTQKYIYQN-LFLQGENSDVILEALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVV------ 122 (488)
T ss_pred HHHHHHHHHHHHH-HHhcCCCcceehhhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCCcccHH------
Confidence 3455666788864 3447788899999888875433 34599999999999999999877775544400000
Q ss_pred cCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCcc
Q psy12546 183 SGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISEN 262 (765)
Q Consensus 183 tg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~ 262 (765)
..+.++.=||.. ...|+.+.++.++.+|..++++.|.+.|.+.|..++
T Consensus 123 ---------al~~a~gsLY~d----------------EveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~l------- 170 (488)
T KOG4682|consen 123 ---------ALQVAFGSLYRD----------------EVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETL------- 170 (488)
T ss_pred ---------HHHHHHhhhhhh----------------heeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-------
Confidence 134444444444 567889999999999999999999999999998854
Q ss_pred ccccCCHHHHHHHhccCCCCCCHHHHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCC
Q psy12546 263 SFYNLSQNGLIQLIQRDSFYAPEIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSG 342 (765)
Q Consensus 263 ~f~~L~~~~l~~ll~~d~l~v~E~~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~ 342 (765)
++...+.......- -.++.|-+.+.+|+.+|.-... ... +|. .++.+-+..++.+..
T Consensus 171 -----spkta~~yYea~ck-Ygle~vk~kc~ewl~~nl~~i~-----------~~q-~l~-----ei~~~Lm~~ll~Spn 227 (488)
T KOG4682|consen 171 -----SPKTACGYYEAACK-YGLESVKKKCLEWLLNNLMTIQ-----------NVQ-LLK-----EISINLMKQLLGSPN 227 (488)
T ss_pred -----ChhhhhHhhhhhhh-hhhHHHHHHHHHHHHHhhHhhh-----------hHH-HHH-----hcCHHHHHHHhCCCC
Confidence 33333333332111 1356899999999999975543 222 333 367766667777777
Q ss_pred CC--C-hhHHHHHHHhhcccccc--cccCCC--------cc---cccCCc--cc--ccccccccccceecccccCc-cce
Q psy12546 343 II--S-ADKILDAIELQTNDKVQ--YRANSP--------EV---EEDGES--SF--RAPINMDEILTYVRLPLISL-DEL 401 (765)
Q Consensus 343 l~--~-~~~i~~ai~~~~~~~~~--f~~~~~--------~~---~~~~~~--~~--R~~~~~~~ll~~VRlpli~~-~~l 401 (765)
|. . +-.+...+..|.--+.. |++..+ |. +.+.+. +. -.......++.+.|+..+.. -.=
T Consensus 228 Lfvmq~EfdLyttlk~WmfLql~pd~~~~lk~~~~ETdvw~tf~~~~~e~~~fl~t~~g~~y~~vF~~LRlq~it~~~~d 307 (488)
T KOG4682|consen 228 LFVMQVEFDLYTTLKKWMFLQLVPDWNGSLKQLLTETDVWFTFQRKDFEGMAFLETEIGRPYVSVFRHLRLQYITSDLAD 307 (488)
T ss_pred eEEEEeeehHHHHHHHHHHhhhcccccchhccCccccceeEEeeecchhhchhhccccCCchHHHHHHHHHHHHHhccch
Confidence 64 3 44566666665322211 332111 11 111110 00 00113457788888874443 344
Q ss_pred eeeeeccccccchhhHhHh
Q psy12546 402 LTTVRSSGIISADKILDAI 420 (765)
Q Consensus 402 ~~~v~~~~l~~~~~l~ea~ 420 (765)
+.+++.+.++..+-+.+-.
T Consensus 308 lkii~~dniiP~ewld~vt 326 (488)
T KOG4682|consen 308 LKIIEQDNIIPSEWLDSVT 326 (488)
T ss_pred hhhhhhcCcCcHHHHHHHH
Confidence 5567777777766443333
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.79 E-value=4.9e-05 Score=57.21 Aligned_cols=46 Identities=4% Similarity=0.101 Sum_probs=35.1
Q ss_pred CCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE-EEecCCCeEEEeccc
Q psy12546 484 TSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE-VSIDQKKWTRVIDYT 535 (765)
Q Consensus 484 ~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~-vs~~~~~W~~v~~~~ 535 (765)
||.++++++++++||++||... + ..+...++ +++..++|..+++|.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-----~-~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-----N-NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-----T-SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-----c-CceeeeEEEEeCCCCEEEEcCCCC
Confidence 5899999999999999999754 1 23333343 567888999999984
No 39
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=97.70 E-value=0.00031 Score=66.36 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=67.5
Q ss_pred ccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEe-eecCCCeeeEEEEEEecCCcceeeee------ccCc
Q psy12546 615 SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLL-WDCDDRSYSYLVDVSINLWDWEIVAD------HTRD 687 (765)
Q Consensus 615 ~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~-w~~~~~~y~y~i~vs~d~~~w~~v~~------~~~~ 687 (765)
+.|+++ ..-.|.... .-...+|.||||+++.|+++.+-. |..+.....|.+ +|.|+.+|..+.+ ..+.
T Consensus 26 ~rL~~~-~~~~W~~~~---~~~~~wlqvDLg~~~~v~~i~~qg~~~~~~~~~~~~~-~s~dg~~W~~~~~~~~~~f~gn~ 100 (139)
T smart00231 26 ARLNGG-SDGAWCPAK---NSLPPWIQVDLGRTRTVTGVITGGRHGDGDGVTYKLL-YSDDGNNWTTYKDGNSKVFPGNS 100 (139)
T ss_pred cCcCcC-CCCcccCCC---CCCCceeEeeccCcEEEEEEEecccCCCCcEEEEEEE-EEeCCCCEeEEeCCCeEEEeCcc
Confidence 345554 223676432 112347999999999999998743 665555544555 9999999998753 1222
Q ss_pred cccceEEEEeec-CCEEEEEEEeccCCcceeEEEEeeeecC
Q psy12546 688 LCRSWQSISFSR-RPVVFVRIIGTHNTMNEVFHCVHFECPD 727 (765)
Q Consensus 688 ~~~~~~~~~f~~-~~~~~ir~~~~~~~~~~~~~~~~~e~~~ 727 (765)
+...-+...|++ ..+|||||+.+.-. +.. |..+|.++
T Consensus 101 d~~~~~~~~~~~~v~ARyvRi~p~~~~-~~~--~~r~ElyG 138 (139)
T smart00231 101 DAGTVVVNEFPPPIVARYIRILPTGWN-GNI--ILRVELLG 138 (139)
T ss_pred CCCceEEEecCCCEEEEEEEEEEeEcC-CCc--EEEEEEEc
Confidence 234556678885 48999999988322 122 56777653
No 40
>KOG2716|consensus
Probab=97.65 E-value=0.00032 Score=70.72 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=79.6
Q ss_pred EEEEECCEEEEeehhHHHhcCHHHHHHhcCCcc--CCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHHHhhh
Q psy12546 59 TVLIVQNEKISVHKVILAARSEYFRALLYGGLC--ESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGK 136 (765)
Q Consensus 59 v~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~--es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~ 136 (765)
|.+-|||+.|..+|.-|.....+|++|+.+++. ....+.|-| |-+|.-|+.+|+||--|.+++++
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe------------ 73 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPE------------ 73 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCcc------------
Confidence 557899999999999999999999999998763 333456777 77999998888888877666442
Q ss_pred ccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHH
Q psy12546 137 KQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSIS 216 (765)
Q Consensus 137 ~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~ 216 (765)
+...+.+++.-|.+|+|++|.+.|.
T Consensus 74 -------------------------------------------------------~~kel~El~~EA~fYlL~~Lv~~C~ 98 (230)
T KOG2716|consen 74 -------------------------------------------------------SEKELKELLREAEFYLLDGLVELCQ 98 (230)
T ss_pred -------------------------------------------------------chHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4778999999999999999999999
Q ss_pred HHHHhh
Q psy12546 217 DYLRVI 222 (765)
Q Consensus 217 ~~L~~~ 222 (765)
..+...
T Consensus 99 ~~i~~~ 104 (230)
T KOG2716|consen 99 SAIARL 104 (230)
T ss_pred HHhhhc
Confidence 987654
No 41
>KOG0379|consensus
Probab=97.63 E-value=0.0021 Score=73.65 Aligned_cols=255 Identities=13% Similarity=0.064 Sum_probs=156.3
Q ss_pred CCcEEEEeeccCCccCCC-CeeeecCCCCeeeecccc-cCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE-
Q psy12546 444 KMGTMVMQGEMKNALLNG-DVNNYDMENGYTRHTITE-ATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE- 520 (765)
Q Consensus 444 ~~~~~viGG~~~~~~l~~-~v~~YD~~~~~W~~~~~~-~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~- 520 (765)
.+.++|.||......... +++.+|..+..|....+. .-|.+|..+.+++++.+||++||..- ..+ +...+.
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-----~~~-~~~~l~~ 143 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-----KYR-NLNELHS 143 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC-----CCC-ChhheEe
Confidence 345789999876655433 699999999999875543 24578999999999999999999542 111 111121
Q ss_pred EEecCCCeEEEecccc-cccCceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEee-cccccccC--CcccccCCcc
Q psy12546 521 VSIDQKKWTRVIDYTR-FYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYT-AQTVQLSE--EGIIIPKHNV 596 (765)
Q Consensus 521 vs~~~~~W~~v~~~~~-~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~-~~~~~~~~--~~~~~p~~nv 596 (765)
.+....+|........ +..|.-+.+ +....+++|-||.+...+ .+..+.+|.. +..|.... ..-..|+...
T Consensus 144 ~d~~t~~W~~l~~~~~~P~~r~~Hs~---~~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH 218 (482)
T KOG0379|consen 144 LDLSTRTWSLLSPTGDPPPPRAGHSA---TVVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGH 218 (482)
T ss_pred ccCCCCcEEEecCcCCCCCCcccceE---EEECCEEEEECCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCc
Confidence 3466778999987655 333332211 223489999999999885 2334444433 23466554 2345576765
Q ss_pred ccc--ccceeEeecccccccccccC----CcccccCCCCCccccc---CCc-cEEEecCCceeeccEEEEeeecCCCeee
Q psy12546 597 ATR--ELSAKVVEGVSRSLSSLIDG----NTVKYDWDSGYTCHQL---GSG-AILVQLGQPYMLDSMRLLLWDCDDRSYS 666 (765)
Q Consensus 597 a~~--~~~~~~~~g~~~~~~~~~~g----d~~~~~w~~g~~~~~~---~~~-~i~v~l~~~y~i~~~~~~~w~~~~~~y~ 666 (765)
+.+ +....+++|.. ..++.++= |..+..|..-.+.-++ +.+ ..++.-.+.+++|+-..-.=..-...|.
T Consensus 219 ~~~~~~~~~~v~gG~~-~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~ 297 (482)
T KOG0379|consen 219 AMVVVGNKLLVFGGGD-DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYG 297 (482)
T ss_pred eEEEECCeEEEEeccc-cCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccc
Confidence 554 67778888865 12332222 5666778855544333 233 2557788899999977410002346777
Q ss_pred EEEEEEecCCcceeeeecc--CccccceEEEEeecCCE-EEEEEEeccCCc
Q psy12546 667 YLVDVSINLWDWEIVADHT--RDLCRSWQSISFSRRPV-VFVRIIGTHNTM 714 (765)
Q Consensus 667 y~i~vs~d~~~w~~v~~~~--~~~~~~~~~~~f~~~~~-~~ir~~~~~~~~ 714 (765)
|.++ ...|..+.... ....|.|....+..... -..++.|.....
T Consensus 298 l~~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (482)
T KOG0379|consen 298 LDLE----TLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQIL 344 (482)
T ss_pred cccc----ccceeeeeccccccccccccccceeeccCCccceeeecCcccc
Confidence 8777 67888887765 55566777666664333 333455543433
No 42
>PF13964 Kelch_6: Kelch motif
Probab=97.62 E-value=9.7e-05 Score=56.51 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=35.8
Q ss_pred CCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEE-EEEecCCCeEEEeccccc
Q psy12546 484 TSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFI-EVSIDQKKWTRVIDYTRF 537 (765)
Q Consensus 484 ~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v-~vs~~~~~W~~v~~~~~~ 537 (765)
||.++++|+++|+||++||.... ..+.-.+ .+++..++|+.+++|...
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~------~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS------GKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC------CCccccEEEEcCCCCcEEECCCCCCC
Confidence 58999999999999999996442 1122223 345778899999999864
No 43
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.58 E-value=0.00014 Score=65.40 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=65.6
Q ss_pred cchHhHHHhhhcC-cccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHh
Q psy12546 143 TLTQNFRALLYGG-LCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRV 221 (765)
Q Consensus 143 ~~S~yF~amf~~~-~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~ 221 (765)
+.|+||++||.+. +.+....+|.+.++++++|+.+++| +|.. ..
T Consensus 32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-------------------~Y~~----------------~~ 76 (111)
T PF00651_consen 32 ARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEY-------------------MYTG----------------EI 76 (111)
T ss_dssp HHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHH-------------------HHHS----------------EE
T ss_pred ccchhhhhccccccccccccccccccccccccccccccc-------------------ccCC----------------cc
Confidence 3699999999998 7888888999999999888876655 3444 44
Q ss_pred hcC-hhhHHHHHHHHHHcCcHHHHHHHHHHHhcc
Q psy12546 222 ILT-VHNACSIFDCAYYYDLKQLNKIVLSFIDYN 254 (765)
Q Consensus 222 ~l~-~~nv~~il~~A~~~~~~~L~~~c~~fi~~n 254 (765)
.++ .+++..++.+|+.|+++.|.+.|.++|.++
T Consensus 77 ~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 77 EINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp EEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 555 899999999999999999999999999875
No 44
>PF13964 Kelch_6: Kelch motif
Probab=97.57 E-value=7.9e-05 Score=57.00 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=34.1
Q ss_pred ccCCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCC
Q psy12546 442 TSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTS 485 (765)
Q Consensus 442 ~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R 485 (765)
...+.+||+||........+++++||+.+++|...++ |+.+|
T Consensus 9 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 9 VVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred EECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 3445699999998855556899999999999997664 99887
No 45
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=97.45 E-value=0.0017 Score=61.95 Aligned_cols=132 Identities=19% Similarity=0.097 Sum_probs=84.4
Q ss_pred CcccccccceeEeeccccc-----ccccccCCcccccCCCCCcccccCCc--cEEEecCCceeeccEEEEee-e-cCCCe
Q psy12546 594 HNVATRELSAKVVEGVSRS-----LSSLIDGNTVKYDWDSGYTCHQLGSG--AILVQLGQPYMLDSMRLLLW-D-CDDRS 664 (765)
Q Consensus 594 ~nva~~~~~~~~~~g~~~~-----~~~~~~gd~~~~~w~~g~~~~~~~~~--~i~v~l~~~y~i~~~~~~~w-~-~~~~~ 664 (765)
.|+|..+...+...+.+.. +..++|||... .|..|.-.|..... |-.||||+.|.|.+|++..- | |..|.
T Consensus 2 ~NvA~~~~a~QSS~~~~~~~~~~~A~~AVDGn~~~-~~~~~scthT~~e~~PWW~VDL~~~~~V~~V~I~NR~Dcc~~rl 80 (151)
T smart00607 2 ENVAGRGPATQSTYGRGAPPGLSHASAAIDGNRAS-FTPEGSCSHTEKRSNPWWRVDLLQYMTIHSVTITNRGDCCGERI 80 (151)
T ss_pred ccccCCCceeeccccCCCCccccCHhHcCcCCccC-CCCCCccccCCCCCCCeEEEeCCCeEEeeEEEEecCCCCCCccc
Confidence 4777765555544332221 45678999755 78888666765432 78999999999999997443 2 34477
Q ss_pred eeEEEEEEecCCcc---eeeeeccCccccceEEEEeec---CCEEEEEEEeccCCcceeEEEEeeeecCCC
Q psy12546 665 YSYLVDVSINLWDW---EIVADHTRDLCRSWQSISFSR---RPVVFVRIIGTHNTMNEVFHCVHFECPDQS 729 (765)
Q Consensus 665 y~y~i~vs~d~~~w---~~v~~~~~~~~~~~~~~~f~~---~~~~~ir~~~~~~~~~~~~~~~~~e~~~~~ 729 (765)
-.|.|+|+....+. ....-.... -..-+.++|.- -..||++|.=+. .++.+|+=.+|+.+-.
T Consensus 81 ~~~eI~IG~s~~~~~~~n~~c~~~~~-~~~~~~~~~~c~~~~~GRYV~i~Lpg--~~~~L~LCEVeV~~~~ 148 (151)
T smart00607 81 TGARILIGNSLENGGINNPNCSTGGL-MAGGETKTFCCPPPMIGRYVTVYLPK--PNESLILCEVEVNALF 148 (151)
T ss_pred cceEEEECCcccccCCcCcccCCCce-eCCCceEEEeCCCCCeeEEEEEEecC--CCccEEEeEEEEcccC
Confidence 77999999654332 211111111 11234566652 467999998554 5678999999987653
No 46
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.30 E-value=0.00035 Score=53.21 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=37.6
Q ss_pred cEEEEeecc-CCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEE
Q psy12546 446 GTMVMQGEM-KNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILI 492 (765)
Q Consensus 446 ~~~viGG~~-~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvv 492 (765)
.+||.||.+ ......++++.||+.+++|... + .+|.+|..|++++
T Consensus 3 ~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~-~-~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 3 KLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI-G-DLPPPRSGHTATV 48 (49)
T ss_pred EEEEECCcCCCCCCEecCEEEEECCCCEEEEC-C-CCCCCccceEEEE
Confidence 479999998 3444558999999999999977 4 4999999999876
No 47
>KOG1230|consensus
Probab=97.29 E-value=0.0069 Score=64.95 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=131.1
Q ss_pred ccCCcEEEEeeccCCc---cCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEc-CeeEEEcceeeeeecCCCceeeE
Q psy12546 442 TSKMGTMVMQGEMKNA---LLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKL-GTQAIVNHIKLLLWDKDLRSYSY 517 (765)
Q Consensus 442 ~~~~~~~viGG~~~~~---~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~-g~iYiiGG~~~~~~~~~~~~y~y 517 (765)
+.+..+++.||+--+. ..-++...||..++.|+...+..-|.||+.|++|+.- |.+|+.||-...- .-.+.|-|
T Consensus 76 PekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSP--nq~qF~HY 153 (521)
T KOG1230|consen 76 PEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASP--NQEQFHHY 153 (521)
T ss_pred cCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCc--chhhhhhh
Confidence 4445789999964332 2357888999999999987764467899999988876 9999999964320 00112222
Q ss_pred EE--EEEecCCCeEEEecccccccCceEEEEeecccEEEEEEEeecCCcceeEEE-EEEEEEeeccc--cc-ccCCc-cc
Q psy12546 518 FI--EVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHI-VSFEIMYTAQT--VQ-LSEEG-II 590 (765)
Q Consensus 518 ~v--~vs~~~~~W~~v~~~~~~~~~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~-~~~e~~~~~~~--~~-~~~~~-~~ 590 (765)
.- ...+....|+.+.--..+..|+-..+ + .-.|++-|-||....+.-+++ .-+.|. +-.+ |. +.+.| -.
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRM--v-awK~~lilFGGFhd~nr~y~YyNDvy~F-dLdtykW~Klepsga~P 229 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRM--V-AWKRQLILFGGFHDSNRDYIYYNDVYAF-DLDTYKWSKLEPSGAGP 229 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCcccee--E-EeeeeEEEEcceecCCCceEEeeeeEEE-eccceeeeeccCCCCCC
Confidence 22 23467788999986655555553332 1 113555566655544554443 234442 2222 32 22112 12
Q ss_pred ccCC---cccccccceeEeecccccccc-------------cc---cCCcccccCC----CCCcccccCCc--cEEEecC
Q psy12546 591 IPKH---NVATRELSAKVVEGVSRSLSS-------------LI---DGNTVKYDWD----SGYTCHQLGSG--AILVQLG 645 (765)
Q Consensus 591 ~p~~---nva~~~~~~~~~~g~~~~~~~-------------~~---~gd~~~~~w~----~g~~~~~~~~~--~i~v~l~ 645 (765)
.|+. -.++-++.+.|.+|-|+-++. +| +|+..-+.|+ +|+. +.+++| ..+-.-+
T Consensus 230 tpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~k-PspRsgfsv~va~n~ 308 (521)
T KOG1230|consen 230 TPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVK-PSPRSGFSVAVAKNH 308 (521)
T ss_pred CCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCC-CCCCCceeEEEecCC
Confidence 2333 234447888899997754421 11 2222235566 3332 233444 3566677
Q ss_pred CceeeccEEEEeeecCC---Ceee--EEEEEEecCCcceeeeeccCccc
Q psy12546 646 QPYMLDSMRLLLWDCDD---RSYS--YLVDVSINLWDWEIVADHTRDLC 689 (765)
Q Consensus 646 ~~y~i~~~~~~~w~~~~---~~y~--y~i~vs~d~~~w~~v~~~~~~~~ 689 (765)
|.+..|||-=|-.+.+. -.|+ |..+ .+.+.|....-.+..+.
T Consensus 309 kal~FGGV~D~eeeeEsl~g~F~NDLy~fd--lt~nrW~~~qlq~~~S~ 355 (521)
T KOG1230|consen 309 KALFFGGVCDLEEEEESLSGEFFNDLYFFD--LTRNRWSEGQLQGKKSP 355 (521)
T ss_pred ceEEecceecccccchhhhhhhhhhhhhee--cccchhhHhhhccCCCC
Confidence 99999998522222221 1222 3223 34667766655444444
No 48
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.21 E-value=0.00082 Score=58.85 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=46.1
Q ss_pred EEEEECCEEEEeehhHHH-hcCHHHHHHhcCC---ccCCCCeeEEecCCCHHHHHHHHHHHhcC
Q psy12546 59 TVLIVQNEKISVHKVILA-ARSEYFRALLYGG---LCESNQNEIELHDTNIVAFKCLLKYIYSG 118 (765)
Q Consensus 59 v~~~v~~~~~~aHr~ILa-arS~yF~~lf~~~---~~es~~~~I~l~~v~~~~f~~lL~ylYtg 118 (765)
|.|.|||+.|.+-+..|. ....+|.+|+.+. .......++-+ |-+|..|+.+|+|+.++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTG 63 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHT
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhc
Confidence 678999999999999998 4467999999864 33445567777 67999998888887773
No 49
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.10 E-value=0.00031 Score=52.80 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=31.1
Q ss_pred cccCCcEEEEeeccCCccCCCCeeeecCCCCeeeeccc
Q psy12546 441 ATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTIT 478 (765)
Q Consensus 441 a~~~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~ 478 (765)
+...+.+||+||.+......+++++||+.+++|...++
T Consensus 8 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 8 VVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp EEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred EEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 44455699999999866666899999999999997665
No 50
>KOG0511|consensus
Probab=97.05 E-value=0.0013 Score=69.32 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=47.5
Q ss_pred EEEEeehhHHHhcCHHHHHHhcCCccCCCC-e---eEEecCCCHHHHHHHHHHHhcCCcccc
Q psy12546 66 EKISVHKVILAARSEYFRALLYGGLCESNQ-N---EIELHDTNIVAFKCLLKYIYSGKLSFR 123 (765)
Q Consensus 66 ~~~~aHr~ILaarS~yF~~lf~~~~~es~~-~---~I~l~~v~~~~f~~lL~ylYtg~l~~~ 123 (765)
.++|||+++++ |++||..||.|++.|+.. . ...++.....+.+.+|+|+|++..++.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~ 361 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDII 361 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccch
Confidence 57999999995 889999999999999542 2 345566778889999999999998865
No 51
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.04 E-value=0.00098 Score=50.68 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=34.3
Q ss_pred CCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE-EEecCCCeEEEecc
Q psy12546 484 TSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE-VSIDQKKWTRVIDY 534 (765)
Q Consensus 484 ~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~-vs~~~~~W~~v~~~ 534 (765)
||..|++++++++||++||. .......+...+. .++....|+.+++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~----~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY----GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc----ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58899999999999999997 1112234444454 45777899999876
No 52
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.03 E-value=0.00084 Score=57.09 Aligned_cols=70 Identities=27% Similarity=0.491 Sum_probs=60.5
Q ss_pred cchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhh
Q psy12546 143 TLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVI 222 (765)
Q Consensus 143 ~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~ 222 (765)
+.|+||++||.+++.++.+..+.+++.++++|+.+|+|+| . . ...
T Consensus 20 ~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly----~---------------~----------------~~~ 64 (90)
T smart00225 20 ACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLY----T---------------G----------------KLD 64 (90)
T ss_pred hcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeec----C---------------c----------------eee
Confidence 3599999999999999889999999999999999999987 1 1 334
Q ss_pred cChhhHHHHHHHHHHcCcHHHHHHH
Q psy12546 223 LTVHNACSIFDCAYYYDLKQLNKIV 247 (765)
Q Consensus 223 l~~~nv~~il~~A~~~~~~~L~~~c 247 (765)
+...++..++.+|..|+++.|.+.|
T Consensus 65 ~~~~~~~~l~~~a~~~~~~~l~~~c 89 (90)
T smart00225 65 LPEENVEELLELADYLQIPGLVELC 89 (90)
T ss_pred cCHHHHHHHHHHHHHHCcHHHHhhh
Confidence 5566889999999999999999887
No 53
>KOG2838|consensus
Probab=96.97 E-value=0.00043 Score=69.68 Aligned_cols=149 Identities=26% Similarity=0.390 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEE-E-CC--------------EEEEeehhHHHhcCHHHHHHhcCCccCCC---------C
Q psy12546 41 QFLSEMIGNLYLNDEFSDTVLI-V-QN--------------EKISVHKVILAARSEYFRALLYGGLCESN---------Q 95 (765)
Q Consensus 41 ~~l~~~l~~l~~~~~~sDv~~~-v-~~--------------~~~~aHr~ILaarS~yF~~lf~~~~~es~---------~ 95 (765)
..+-.+|..+++..-+.|+.++ + +| .++.|||+|.|+||++||.++.....+.. .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 4566778888887766665544 2 32 47999999999999999999965443322 1
Q ss_pred eeEEecC-CCHHHH-HHHHHHHhcCCccccCcchhHHHHHhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHH
Q psy12546 96 NEIELHD-TNIVAF-KCLLKYIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVA 173 (765)
Q Consensus 96 ~~I~l~~-v~~~~f-~~lL~ylYtg~l~~~~~~~~~ll~i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~ 173 (765)
..|.+.+ +=|.+| ..+|++|||+.+++.-.. .+..+. |.+.|.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~h------------kce~Si---------gSLSea-------------- 344 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAH------------KCEDSI---------GSLSEA-------------- 344 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcc------------cCCccc---------ccHHHH--------------
Confidence 2455544 444544 678999999999864211 000000 000000
Q ss_pred HHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHHH
Q psy12546 174 FKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVILTVHNACS 230 (765)
Q Consensus 174 f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~~ 230 (765)
+++. -.|+-.. +-...+++++.+|.+|.+.-|.++|++.+......+++..
T Consensus 345 -kAit---naGkpn~--~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 345 -KAIT---NAGKPND--LQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNG 395 (401)
T ss_pred -HHHH---cCCCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 1111 1232221 2367889999999999999999999999988776655433
No 54
>KOG0379|consensus
Probab=96.92 E-value=0.0055 Score=70.24 Aligned_cols=83 Identities=6% Similarity=0.002 Sum_probs=60.5
Q ss_pred CcEEEEeeccCCccCCCCeeeecCCCCeeeecccc-cCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE-EE
Q psy12546 445 MGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITE-ATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE-VS 522 (765)
Q Consensus 445 ~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~-~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~-vs 522 (765)
..+|++||.+.......++++||+.+++|..+..- .+|.+|.+|++++.+.++||.||+... .. +...+. +.
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~-----~~-~~ndl~i~d 196 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT-----GD-SLNDLHIYD 196 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc-----cc-ceeeeeeec
Confidence 35789999986444457899999999999864321 258899999999999999999997432 11 222222 34
Q ss_pred ecCCCeEEEec
Q psy12546 523 IDQKKWTRVID 533 (765)
Q Consensus 523 ~~~~~W~~v~~ 533 (765)
+....|.++.-
T Consensus 197 ~~~~~W~~~~~ 207 (482)
T KOG0379|consen 197 LETSTWSELDT 207 (482)
T ss_pred cccccceeccc
Confidence 56668999974
No 55
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.78 E-value=0.00038 Score=61.80 Aligned_cols=86 Identities=29% Similarity=0.516 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCC-C-ChhHHHHHHHhhcccccccc
Q psy12546 287 DIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGI-I-SADKILDAIELQTNDKVQYR 364 (765)
Q Consensus 287 ~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l-~-~~~~i~~ai~~~~~~~~~f~ 364 (765)
++.+++.+++..|+.+.. ..+++++ ++.+.|..++..+.+ + ++..+++++..|....
T Consensus 15 ~L~~~~~~~i~~nf~~v~-----------~~~~f~~------L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~---- 73 (103)
T PF07707_consen 15 ELAEACLRFIAKNFNEVS-----------KSDEFLE------LPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN---- 73 (103)
T ss_dssp HHHHHHHHHHHHTHHHHT-----------TSHHHHC------S-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHHHHHHc-----------cchhhhc------CCHHHHHHHHhccccccccHHHHHHHHHHHHHhC----
Confidence 789999999999988775 4557777 999999999999998 3 5568988888765543
Q ss_pred cCCCcccccCCcccccccccccccceecccccCccceeeee
Q psy12546 365 ANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTV 405 (765)
Q Consensus 365 ~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~~v 405 (765)
... | ...+.+++++||+|+|++.+|.+.|
T Consensus 74 ---------~~~--r-~~~~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 74 ---------PEN--R-EEHLKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp ---------HHH--H-TTTHHHHHCCCHHHCT-HHHHHHCC
T ss_pred ---------HHH--H-HHHHHHHHHhCCcccCCHHHHHHHH
Confidence 221 3 3488999999999999998887655
No 56
>KOG1987|consensus
Probab=96.74 E-value=0.00081 Score=72.18 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=99.6
Q ss_pred CEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHHHhhhccCCCCcc
Q psy12546 65 NEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKGTTL 144 (765)
Q Consensus 65 ~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~~~~~~~~~ 144 (765)
+..+.+|+.+++++|+.|+.|+..+..+.....+.+.+..++.++++..|.|+..-.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~----------------------- 165 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQV----------------------- 165 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccch-----------------------
Confidence 455999999999999999999988776666666677788888887777777765332
Q ss_pred hHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHH---HHHHHHhhhCcHHHHHHHHHHHHh
Q psy12546 145 TQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVIL---DILGLSHKYGFQDLENSISDYLRV 221 (765)
Q Consensus 145 S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl---~ll~~A~~~~l~~L~~~c~~~L~~ 221 (765)
. ..+.+. .++..|.+++...|+..|...+..
T Consensus 166 -------------------------------------------~---~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~ 199 (297)
T KOG1987|consen 166 -------------------------------------------S---SVERIFEKHPDLAAAFKYKNRHLKLACMPVLLS 199 (297)
T ss_pred -------------------------------------------H---HHHHhhcCChhhhhccccccHHHHHHHHHHHHH
Confidence 0 123332 677789999999999999999999
Q ss_pred hcChhhHHHHHHHHHHcCcHHHHHHHHHHHhc
Q psy12546 222 ILTVHNACSIFDCAYYYDLKQLNKIVLSFIDY 253 (765)
Q Consensus 222 ~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~ 253 (765)
.+...+++..+..+..+++..+...|..++..
T Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 200 LIETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred HHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999887
No 57
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.47 E-value=0.0054 Score=64.60 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=40.5
Q ss_pred hcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCcc-ccccCCHHHHHHH
Q psy12546 222 ILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISEN-SFYNLSQNGLIQL 275 (765)
Q Consensus 222 ~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~-~f~~L~~~~l~~l 275 (765)
.++++||+.|+..|+..+++.|.+.|..|+..|+.+++.++ ++.-|+.+.+..|
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 45677777777778888888888888888888888777644 5666666666555
No 58
>KOG1230|consensus
Probab=96.30 E-value=0.02 Score=61.55 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=82.3
Q ss_pred cccCCcEEEEeeccCCcc-----CCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCcee
Q psy12546 441 ATSKMGTMVMQGEMKNAL-----LNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSY 515 (765)
Q Consensus 441 a~~~~~~~viGG~~~~~~-----l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y 515 (765)
+...+.+++.||+-.+.. --++.|.+|..++.|..+..-.-|++|++|-+++-..++.+.||+.-. .+.|
T Consensus 129 a~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~-----nr~y 203 (521)
T KOG1230|consen 129 AVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS-----NRDY 203 (521)
T ss_pred EeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC-----CCce
Confidence 334445788999865533 247899999999999976654578999999999999999999998543 4556
Q ss_pred eEEEE---EEecCCCeEEEecccc--cccCceEEEEeecccEEEEEEEeecCC
Q psy12546 516 SYFIE---VSIDQKKWTRVIDYTR--FYCRSWQFLYFPTQVVQYIRVVGTNNT 563 (765)
Q Consensus 516 ~y~v~---vs~~~~~W~~v~~~~~--~~~~~~~~~~f~~~~~ryI~ivg~~~~ 563 (765)
.|+=. ++++.=+|..+-+ +. +..|+- --|.+.+..-|.+.||+.-
T Consensus 204 ~YyNDvy~FdLdtykW~Klep-sga~PtpRSG--cq~~vtpqg~i~vyGGYsK 253 (521)
T KOG1230|consen 204 IYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSG--CQFSVTPQGGIVVYGGYSK 253 (521)
T ss_pred EEeeeeEEEeccceeeeeccC-CCCCCCCCCc--ceEEecCCCcEEEEcchhH
Confidence 55544 4566779999976 22 333321 1255666778888888754
No 59
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.05 E-value=0.0093 Score=45.15 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=25.3
Q ss_pred CCCCccEEEE-cCeeEEEcceeeeeecCCCceeeEEEEEEecCCCeEEEeccc
Q psy12546 484 TSCDNGILIK-LGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYT 535 (765)
Q Consensus 484 ~R~~~~vvvl-~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~ 535 (765)
||..|+++.+ ++++|++||.... ...++-.-.++...++|++++++.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-----~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-----GSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE------TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-----CcccCCEEEEECCCCEEEECCCCC
Confidence 5888888888 5999999997653 111211123467788999997764
No 60
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.69 E-value=0.005 Score=54.09 Aligned_cols=83 Identities=29% Similarity=0.484 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhCCCcccccCCcccCCCCchhhhhccccCCCCCHHHHHHhcccCCCC--ChhHHHHHHHhhcccccccc
Q psy12546 287 DIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTVRSSGII--SADKILDAIELQTNDKVQYR 364 (765)
Q Consensus 287 ~l~~av~~Wi~~n~~~~~~~~~~~~~~~~~~~~ll~~VR~~lls~~~L~~~v~~~~l~--~~~~i~~ai~~~~~~~~~f~ 364 (765)
++.+++.+|+..|+.... ..++++. ++.+.+..++..+.+. ++..+++++..|.+.+
T Consensus 15 ~L~~~~~~~i~~nf~~~~-----------~~~~f~~------L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~---- 73 (101)
T smart00875 15 ELLEKALRFILKNFLEVA-----------QSEEFLE------LSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD---- 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHh-----------cCcHHhc------CCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC----
Confidence 788999999999977665 3356666 8999999999999984 5667888877665533
Q ss_pred cCCCcccccCCcccccccccccccceecccccCccceee
Q psy12546 365 ANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLT 403 (765)
Q Consensus 365 ~~~~~~~~~~~~~~R~~~~~~~ll~~VRlpli~~~~l~~ 403 (765)
.. +.. .+..++.+||+|+|++..+.+
T Consensus 74 ---------~~---~~~-~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 ---------PE---RRR-HLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred ---------HH---HHH-HHHHHHHhCCCCCCCHHHHHh
Confidence 11 223 678999999999999876543
No 61
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=95.68 E-value=0.1 Score=49.08 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=62.1
Q ss_pred ccEEEEcCeeEEEcceeeeeec---CCCceeeEEEEEEecCCCeEEEecc----c--c-cccCceEEEEeec-ccEEEEE
Q psy12546 488 NGILIKLGTQAIVNHIKLLLWD---KDLRSYSYFIEVSIDQKKWTRVIDY----T--R-FYCRSWQFLYFPT-QVVQYIR 556 (765)
Q Consensus 488 ~~vvvl~g~iYiiGG~~~~~~~---~~~~~y~y~v~vs~~~~~W~~v~~~----~--~-~~~~~~~~~~f~~-~~~ryI~ 556 (765)
.-+.+-.++.+.|.++...... ...+...|.+++|.|..+|+.+.+. . . ......+.+.|.+ ...||||
T Consensus 46 ~wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv~aRyvR 125 (143)
T cd00057 46 QWLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFPPPIVARYIR 125 (143)
T ss_pred ceEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEEeCCCCEEEEEEE
Confidence 4467788999999998765222 2344568999999999999998862 1 1 1223567788876 5689999
Q ss_pred EEeecCCcceeEEEEEEEEE
Q psy12546 557 VVGTNNTVNKVFHIVSFEIM 576 (765)
Q Consensus 557 ivg~~~~~~~~~~~~~~e~~ 576 (765)
++.+.... .+++ +||+|
T Consensus 126 l~~~~~~~--~~~l-e~evy 142 (143)
T cd00057 126 ILPTTWNG--NISL-RLELY 142 (143)
T ss_pred EEEeecCC--ccEE-EEEEc
Confidence 99876544 6777 89886
No 62
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=95.65 E-value=0.17 Score=46.16 Aligned_cols=87 Identities=26% Similarity=0.260 Sum_probs=62.6
Q ss_pred CCccEEEEcCeeEEEcceeeeeecCCC--ceeeEEEEEEecCCCeEEEecc--cccccCceEEEEeec-ccEEEEEEEee
Q psy12546 486 CDNGILIKLGTQAIVNHIKLLLWDKDL--RSYSYFIEVSIDQKKWTRVIDY--TRFYCRSWQFLYFPT-QVVQYIRVVGT 560 (765)
Q Consensus 486 ~~~~vvvl~g~iYiiGG~~~~~~~~~~--~~y~y~v~vs~~~~~W~~v~~~--~~~~~~~~~~~~f~~-~~~ryI~ivg~ 560 (765)
...-+.+-.+..|-|.|+.+..+.... +..+|.|+++.|+.+|+.+... ........+.+.|.. ..+|||||...
T Consensus 36 ~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~dg~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ryiri~~~ 115 (129)
T PF00754_consen 36 SPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSNDGSNWTTVASQFYGNTNSGSVVTISFFPPVKARYIRITVT 115 (129)
T ss_dssp STEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESSSSSEEEEEETEEEESSSSSSEEEEEEEEEEEEEEEEEEE
T ss_pred CCceEEEEeeeeEecceeeecccccccceeeeeeeeeeecccccccccccceeeccCCCceEEEEeCCCeEEEEEEEEEE
Confidence 344567778999999999886443332 5668999999999999999984 344455666655554 66899999987
Q ss_pred -cCCcceeEEEEE
Q psy12546 561 -NNTVNKVFHIVS 572 (765)
Q Consensus 561 -~~~~~~~~~~~~ 572 (765)
.++.+....+.+
T Consensus 116 ~~~~~~~~~~i~E 128 (129)
T PF00754_consen 116 SWNGNNGWVSIAE 128 (129)
T ss_dssp EEESCSSEEEEEE
T ss_pred EECCCCceEEEEe
Confidence 356666555544
No 63
>KOG4693|consensus
Probab=95.54 E-value=0.082 Score=53.81 Aligned_cols=89 Identities=9% Similarity=0.083 Sum_probs=60.3
Q ss_pred EEEEeeccCC-ccC-------CCCeeeecCCCCeeeecccccC-CCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeE
Q psy12546 447 TMVMQGEMKN-ALL-------NGDVNNYDMENGYTRHTITEAT-SSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSY 517 (765)
Q Consensus 447 ~~viGG~~~~-~~l-------~~~v~~YD~~~~~W~~~~~~~m-~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y 517 (765)
.|+.||+... ... -..+..+|..++-|...++.+| |.+|..|++.+-+|++|+.||..+.+=..-..-|
T Consensus 194 MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy-- 271 (392)
T KOG4693|consen 194 MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLY-- 271 (392)
T ss_pred EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhccee--
Confidence 6899997533 222 2345568999999998777655 6889999999999999999998764211111111
Q ss_pred EEEEEecCCCeEEEeccccccc
Q psy12546 518 FIEVSIDQKKWTRVIDYTRFYC 539 (765)
Q Consensus 518 ~v~vs~~~~~W~~v~~~~~~~~ 539 (765)
.+.+....|..+..-.++-|
T Consensus 272 --~FdP~t~~W~~I~~~Gk~P~ 291 (392)
T KOG4693|consen 272 --CFDPKTSMWSVISVRGKYPS 291 (392)
T ss_pred --ecccccchheeeeccCCCCC
Confidence 22366678888876554433
No 64
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=95.33 E-value=0.013 Score=44.32 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=21.9
Q ss_pred CcEEEEeeccCCccCCCCeeeecCCCCeeeecc
Q psy12546 445 MGTMVMQGEMKNALLNGDVNNYDMENGYTRHTI 477 (765)
Q Consensus 445 ~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~ 477 (765)
+.++++||.+......++++.||+.+++|+...
T Consensus 13 ~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 13 NSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp TEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 458999999987656689999999999999764
No 65
>KOG1724|consensus
Probab=95.31 E-value=0.24 Score=47.69 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=82.9
Q ss_pred CCEEEEeehhHHHhcCHHHHHHhcC-CccCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHHHhhhccCCCC
Q psy12546 64 QNEKISVHKVILAARSEYFRALLYG-GLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKGT 142 (765)
Q Consensus 64 ~~~~~~aHr~ILaarS~yF~~lf~~-~~~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~~~~~~~ 142 (765)
+|+.|.+-..++ ..|..+++++.. +..... ..|.|+.|....|..|++|.+--+-+....
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~----------------- 73 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPAN----------------- 73 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccC-CccccCccCHHHHHHHHHHHHHcccccccc-----------------
Confidence 799999988876 478888888864 222222 579999999999999999999855432211
Q ss_pred cchHhHHHhhhcCcccC--CccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHH
Q psy12546 143 TLTQNFRALLYGGLCES--NQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLR 220 (765)
Q Consensus 143 ~~S~yF~amf~~~~~Es--~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~ 220 (765)
.|. ......|+.-+.+-|+ ++..++.+++.+|+++.++.|.+.|++.+.
T Consensus 74 --------------~~~~~~~~~~~i~~WD~~Flk---------------~d~~tLfdli~AAnyLdi~gLl~~~ck~va 124 (162)
T KOG1724|consen 74 --------------PEDKELPEETDIPEWDAEFLK---------------VDQGTLFDLILAANYLDIKGLLDLTCKTVA 124 (162)
T ss_pred --------------cccccccccCCccHHHHHHHh---------------cCHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 011 1223335555553333 257799999999999999999999999987
Q ss_pred hhcChhhH
Q psy12546 221 VILTVHNA 228 (765)
Q Consensus 221 ~~l~~~nv 228 (765)
..+...+-
T Consensus 125 ~mikgktp 132 (162)
T KOG1724|consen 125 NMIKGKTP 132 (162)
T ss_pred HHHccCCH
Confidence 76654443
No 66
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.09 E-value=0.12 Score=46.13 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=47.5
Q ss_pred EEEEE-CCEEEEeehhHHHhcCHHHHHHhcCCcc-CCCCeeEEecCCCHHHHHHHHHHHhcCC
Q psy12546 59 TVLIV-QNEKISVHKVILAARSEYFRALLYGGLC-ESNQNEIELHDTNIVAFKCLLKYIYSGK 119 (765)
Q Consensus 59 v~~~v-~~~~~~aHr~ILaarS~yF~~lf~~~~~-es~~~~I~l~~v~~~~f~~lL~ylYtg~ 119 (765)
++|+. +|+.|.+.+.+. ..|..++.|+.+.-. ......|.+++++..+|+.+++|++--.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~ 65 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHV 65 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcc
Confidence 45554 899999999987 589999999975322 2222589999999999999999998754
No 67
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.03 E-value=0.027 Score=42.65 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=28.8
Q ss_pred ccCCcEEEEeec--cCCccCCCCeeeecCCCCeeeeccc
Q psy12546 442 TSKMGTMVMQGE--MKNALLNGDVNNYDMENGYTRHTIT 478 (765)
Q Consensus 442 ~~~~~~~viGG~--~~~~~l~~~v~~YD~~~~~W~~~~~ 478 (765)
...+.+||+||+ .......++++.||+++++|.....
T Consensus 9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 445679999999 4445556899999999999996543
No 68
>KOG3473|consensus
Probab=94.96 E-value=0.17 Score=43.41 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=43.9
Q ss_pred EEEEE-CCEEEEeehhHHHhcCHHHHHHhcCC--ccCCCCeeEEecCCCHHHHHHHHHHH
Q psy12546 59 TVLIV-QNEKISVHKVILAARSEYFRALLYGG--LCESNQNEIELHDTNIVAFKCLLKYI 115 (765)
Q Consensus 59 v~~~v-~~~~~~aHr~ILaarS~yF~~lf~~~--~~es~~~~I~l~~v~~~~f~~lL~yl 115 (765)
|+++- +|.+|-.-|.+ |.-|.-.|+||.|. +.+....+|.+++++...++.+.+|+
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl 77 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYL 77 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHh
Confidence 44444 67777777765 56789999999975 45556679999999999999888887
No 69
>PF13854 Kelch_5: Kelch motif
Probab=94.65 E-value=0.031 Score=40.93 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=21.8
Q ss_pred CCCCCCCccEEEEcCeeEEEccee
Q psy12546 481 TSSTSCDNGILIKLGTQAIVNHIK 504 (765)
Q Consensus 481 m~~~R~~~~vvvl~g~iYiiGG~~ 504 (765)
+|.+|.+|++++.+++||+.||..
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCcc
Confidence 367899999999999999999975
No 70
>PLN02772 guanylate kinase
Probab=94.56 E-value=0.06 Score=59.08 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=47.4
Q ss_pred CcEEEEeeccCCccCCCCeeeecCCCCeeeecc--cccCCCCCCCccEEEE-cCeeEEEcce
Q psy12546 445 MGTMVMQGEMKNALLNGDVNNYDMENGYTRHTI--TEATSSTSCDNGILIK-LGTQAIVNHI 503 (765)
Q Consensus 445 ~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~--~~~m~~~R~~~~vvvl-~g~iYiiGG~ 503 (765)
..+||+||.+........+++||..++.|.... . .-|.+|..|+++++ +++|+|+++-
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G-~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLG-TGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccC-CCCCCCCcceEEEECCceEEEEeCC
Confidence 358999998775545678999999999999654 3 36789999999888 7899999974
No 71
>KOG2714|consensus
Probab=94.43 E-value=0.15 Score=55.32 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=51.9
Q ss_pred EEEEECCEEEEeehhHHHhcC--HHHHHHhcCCccCCCCee--EEecCCCHHHHHHHHHHHhcCCcccc
Q psy12546 59 TVLIVQNEKISVHKVILAARS--EYFRALLYGGLCESNQNE--IELHDTNIVAFKCLLKYIYSGKLSFR 123 (765)
Q Consensus 59 v~~~v~~~~~~aHr~ILaarS--~yF~~lf~~~~~es~~~~--I~l~~v~~~~f~~lL~ylYtg~l~~~ 123 (765)
|.|-|||+.|.-.|.-|+-.. .+|.+|+.+.+.....+. |-| |-+|+.|..+|+||-|+.++..
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~ 80 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDAS 80 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCc
Confidence 668899999999999997655 699999998876555443 555 7799999999999999988753
No 72
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.37 E-value=0.25 Score=39.50 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=44.4
Q ss_pred EEEEE-CCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhc
Q psy12546 59 TVLIV-QNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYS 117 (765)
Q Consensus 59 v~~~v-~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYt 117 (765)
|+|+. +|+.|.+.+.++. .|..++.||.+.-.+.. .|.+++++...|+.+++|++-
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 44554 8999999999875 89999999976322222 899999999999999999873
No 73
>KOG4276|consensus
Probab=93.50 E-value=0.59 Score=40.12 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=53.6
Q ss_pred cEEEecCCceeeccEEEEeeecCC-Cee--eEEEEEEecCCcceeeeeccCc--cccceEEEEee------cCCEEEEEE
Q psy12546 639 AILVQLGQPYMLDSMRLLLWDCDD-RSY--SYLVDVSINLWDWEIVADHTRD--LCRSWQSISFS------RRPVVFVRI 707 (765)
Q Consensus 639 ~i~v~l~~~y~i~~~~~~~w~~~~-~~y--~y~i~vs~d~~~w~~v~~~~~~--~~~~~~~~~f~------~~~~~~ir~ 707 (765)
+.+||||---+...-- |.--.++ |+. +...+.|+|++.|+.+..+..+ .|..=|..+.+ ..|-||+||
T Consensus 9 wf~iDLG~~vip~~y~-lrh~rgygRsalRnW~fQgS~DgktWt~l~vH~DD~sl~epGstAtWpi~~a~~~~~fRffRi 87 (113)
T KOG4276|consen 9 WFAIDLGLEVIPTAYT-LRHARGYGRSALRNWKFQGSKDGKTWTDLRVHVDDKSLCEPGSTATWPITAANDLLPFRFFRI 87 (113)
T ss_pred eEEEecCceEeeeeee-eeecccccHHHhhheeeeccccCCcceeEEEEeccccccCCCccccccccCcccccceEEEEE
Confidence 6899999644433322 2333343 322 2788999999999999886543 23222333332 127899999
Q ss_pred EeccCCc---ceeEEEEeeeecC
Q psy12546 708 IGTHNTM---NEVFHCVHFECPD 727 (765)
Q Consensus 708 ~~~~~~~---~~~~~~~~~e~~~ 727 (765)
+-+..++ .....|..||.++
T Consensus 88 ~q~G~nasgqThylscsgfElYG 110 (113)
T KOG4276|consen 88 VQNGKNASGQTHYLSCSGFELYG 110 (113)
T ss_pred EecCCCCCCccceeEeeeEEEEE
Confidence 9774433 3445566777765
No 74
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=92.88 E-value=1.4 Score=49.67 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=93.9
Q ss_pred eecCCCcee--eEEEEEEecCCCeEEE-ecc-----ccccc-CceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEe
Q psy12546 507 LWDKDLRSY--SYFIEVSIDQKKWTRV-IDY-----TRFYC-RSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMY 577 (765)
Q Consensus 507 ~~~~~~~~y--~y~v~vs~~~~~W~~v-~~~-----~~~~~-~~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~ 577 (765)
.|......+ .+.|+.|.|.++|..+ ++. +...- -.-..|.|+...-||.||+- ++.+....+..+++-.
T Consensus 133 ~w~~~~~~~~~~v~VeaSdDl~~W~~l~~~~~l~~L~~~~~~l~~~~I~L~~~~~rYLRl~~--~~~~~~p~l~~~~l~~ 210 (429)
T PF13163_consen 133 DWPQSNFNWQARVSVEASDDLQHWRPLAGDAQLMDLSNGGQRLVQDRIELPGSNARYLRLTW--NDPQSAPPLTSVSLES 210 (429)
T ss_pred EeecCCCCceEEEEEEEecCcccceEccCCceEEEeccCCcceeeeeEccCCCCCceEEEEe--CCCCCCCcceeEEeee
Confidence 464444444 8999999999999999 543 22211 12235777777889999986 2222222222222211
Q ss_pred ecccccccCCcccccCCcccccccceeEeecccccccccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEe
Q psy12546 578 TAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLL 657 (765)
Q Consensus 578 ~~~~~~~~~~~~~~p~~nva~~~~~~~~~~g~~~~~~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~ 657 (765)
.... ..++ +. ...|..+-.-+.-+.+.+.++|..++.|..+++
T Consensus 211 ~~~~------------~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~~~lp~~~Pv~~l~I-- 253 (429)
T PF13163_consen 211 QQSA------------APPA----------------------DS-PEQWSQGLQPDKDSAGEYVFRLPGALPVSRLRI-- 253 (429)
T ss_pred ccCC------------Cccc----------------------cC-ceEEeeccccccCCCceEEEECCCCcceeEEEE--
Confidence 0000 0000 00 123444443333344568889999999999998
Q ss_pred eecCCCeeeEEEEE---EecCCcceeeeeccC-------ccccceEEEEeecCCEEEEEEEecc
Q psy12546 658 WDCDDRSYSYLVDV---SINLWDWEIVADHTR-------DLCRSWQSISFSRRPVVFVRIIGTH 711 (765)
Q Consensus 658 w~~~~~~y~y~i~v---s~d~~~w~~v~~~~~-------~~~~~~~~~~f~~~~~~~ir~~~~~ 711 (765)
.....-|---|+| +.++.-|+.++.-.- ..-++ ..+.+++.++||+||+--.
T Consensus 254 -~l~~~N~~~pv~i~~R~~~~~~W~~l~~~~lyrl~~~g~~~~s-~~l~l~~~~~r~~Rl~v~n 315 (429)
T PF13163_consen 254 -NLPQPNTVRPVTIESRSDADQPWRPLASGVLYRLQQDGQEQSS-PPLALPGTPVRYWRLQVDN 315 (429)
T ss_pred -ecCCCCcEEEEEEEEEcCCCCCCeEeccEEEEEeecCCCcccC-CcEecCCCcceeEEEEEec
Confidence 3333322333343 345679999987333 12222 4588899999999998654
No 75
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=92.16 E-value=0.91 Score=42.69 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=70.4
Q ss_pred cccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCCCeee---EEEEEEecCCcceeeeeccCcccc
Q psy12546 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS---YLVDVSINLWDWEIVADHTRDLCR 690 (765)
Q Consensus 614 ~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~---y~i~vs~d~~~w~~v~~~~~~~~~ 690 (765)
..|+|||+.+ .|.|--+ .+..|-+++.+...|..+.+.+=-..|-+|. -.|.+.++..+++.+....-....
T Consensus 21 ~~L~D~~~~T-yWQSDg~----qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~~dl~e~~~v~l~~p~ 95 (139)
T cd08366 21 DQLRDDSLDT-YWQSDGP----QPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTSPHDLQEVRTVELEEPN 95 (139)
T ss_pred HHhcCCCCCc-cCCCCCC----CCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECCcCchhheEEEEcCCCC
Confidence 7799999988 5998643 3556999999999999998733222455555 445555567789999988877777
Q ss_pred ceEEEEeec------CCEEEEEEEeccC
Q psy12546 691 SWQSISFSR------RPVVFVRIIGTHN 712 (765)
Q Consensus 691 ~~~~~~f~~------~~~~~ir~~~~~~ 712 (765)
+|..+.|.. ..+.||+|.-..|
T Consensus 96 Gwv~i~l~~~~~~~~~~~~~iqi~I~~n 123 (139)
T cd08366 96 GWVHIPLEDNRDGKPLRTFFLQIAILSN 123 (139)
T ss_pred EEEEEEccCCCCCCeeEEEEEEEEEecc
Confidence 999999885 4567888887754
No 76
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=91.71 E-value=1.4 Score=41.12 Aligned_cols=90 Identities=20% Similarity=0.364 Sum_probs=60.4
Q ss_pred ccEEEecCCceeeccEEEEeeec-----CCCeeeEEEEEEecCCc--ceeeeecc-CccccceEEEEeecC---CEEEEE
Q psy12546 638 GAILVQLGQPYMLDSMRLLLWDC-----DDRSYSYLVDVSINLWD--WEIVADHT-RDLCRSWQSISFSRR---PVVFVR 706 (765)
Q Consensus 638 ~~i~v~l~~~y~i~~~~~~~w~~-----~~~~y~y~i~vs~d~~~--w~~v~~~~-~~~~~~~~~~~f~~~---~~~~ir 706 (765)
|.+.|+|.++-.|.++-+--... ...--.|.|..+.|..+ |..+++.+ ....++.|.+.++.. +++|||
T Consensus 32 ~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~~~~~~~i~ 111 (135)
T PF07738_consen 32 GWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPPRQPVRYIK 111 (135)
T ss_dssp EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS--S--EEEEE
T ss_pred eEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCchhcCcEEE
Confidence 46999999999999998733332 11222488888887773 99999988 677889999999966 599999
Q ss_pred EEeccCCcceeEEEE-eeeecC
Q psy12546 707 IIGTHNTMNEVFHCV-HFECPD 727 (765)
Q Consensus 707 ~~~~~~~~~~~~~~~-~~e~~~ 727 (765)
+.-+.|--++.+-|+ .|++.+
T Consensus 112 l~i~sN~G~~~ytclyr~rVhG 133 (135)
T PF07738_consen 112 LRILSNHGNEEYTCLYRFRVHG 133 (135)
T ss_dssp EEE--BSS-SSEEEE-EEEEEE
T ss_pred EEEEcCCCCCceEEEEEEEEEe
Confidence 999999877755554 666543
No 77
>KOG1665|consensus
Probab=90.97 E-value=0.98 Score=44.94 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=59.8
Q ss_pred cEEEEECCEEEEeehhHHHhcCH--HHHHHhcCCc---cCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHH
Q psy12546 58 DTVLIVQNEKISVHKVILAARSE--YFRALLYGGL---CESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILD 132 (765)
Q Consensus 58 Dv~~~v~~~~~~aHr~ILaarS~--yF~~lf~~~~---~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~ 132 (765)
=|.+-+||++|---+.-|..|=| .+.+||.+.- .++.+..+-| |-+|..|+-+|.|+-.|.++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~----------- 77 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIP----------- 77 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCcee-----------
Confidence 35677888888877777766643 5677776521 2333334444 66777775555555555443
Q ss_pred HhhhccCCCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHH
Q psy12546 133 ILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLE 212 (765)
Q Consensus 133 i~~~~~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~ 212 (765)
. .+.-+++++|..|++|++-.|+
T Consensus 78 -------------------------------------------------------~--~s~i~~lgvLeeArff~i~sL~ 100 (302)
T KOG1665|consen 78 -------------------------------------------------------S--LSDIDCLGVLEEARFFQILSLK 100 (302)
T ss_pred -------------------------------------------------------e--cCCccHHHHHHHhhHHhhHhHH
Confidence 2 1355788999999999999998
Q ss_pred HHHHH
Q psy12546 213 NSISD 217 (765)
Q Consensus 213 ~~c~~ 217 (765)
+..++
T Consensus 101 ~hle~ 105 (302)
T KOG1665|consen 101 DHLED 105 (302)
T ss_pred hHHhh
Confidence 88776
No 78
>KOG4152|consensus
Probab=90.15 E-value=0.68 Score=51.28 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=45.2
Q ss_pred EEEEeeccCCccCCCCeeeecCCCCeeeecccc-cCCCCCCCccEEEEcCeeEEEccee
Q psy12546 447 TMVMQGEMKNALLNGDVNNYDMENGYTRHTITE-ATSSTSCDNGILIKLGTQAIVNHIK 504 (765)
Q Consensus 447 ~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~-~m~~~R~~~~vvvl~g~iYiiGG~~ 504 (765)
++|.||.++.-+ ++.|..|.++-.|.+.--+ --|.||+-|+..++++++|+.||.-
T Consensus 218 mvvyGGM~G~RL--gDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 218 MVVYGGMSGCRL--GDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred EEEEcccccccc--cceeEEecceeecccccccCCCCCCcccccceeecceeEEeccee
Confidence 688899887543 7899999999999863221 1356899999999999999999964
No 79
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.86 E-value=0.54 Score=50.19 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=44.3
Q ss_pred CcEEEEeeccCC----ccCCCCeeeecCCCCeeeecccccCCCCCCCccEEEEcC-eeEEEcceee
Q psy12546 445 MGTMVMQGEMKN----ALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLG-TQAIVNHIKL 505 (765)
Q Consensus 445 ~~~~viGG~~~~----~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g-~iYiiGG~~~ 505 (765)
..+||.||.-.+ ....+++.+|||..|+|..+.. ..|.....+..+++++ ++|+.||..-
T Consensus 93 ~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t-~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 93 GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT-RSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred CeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc-ccccccccceeEecCCceEEEEccccH
Confidence 358999986432 2345789999999999997665 2444555666788888 9999999653
No 80
>smart00612 Kelch Kelch domain.
Probab=87.82 E-value=0.59 Score=34.22 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=26.0
Q ss_pred eeEEEcceeeeeecCCCceeeEEEE-EEecCCCeEEEecccccccC
Q psy12546 496 TQAIVNHIKLLLWDKDLRSYSYFIE-VSIDQKKWTRVIDYTRFYCR 540 (765)
Q Consensus 496 ~iYiiGG~~~~~~~~~~~~y~y~v~-vs~~~~~W~~v~~~~~~~~~ 540 (765)
+||++||... ......++ +++..+.|..+++|...++.
T Consensus 1 ~iyv~GG~~~-------~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 39 (47)
T smart00612 1 KIYVVGGFDG-------GQRLKSVEVYDPETNKWTPLPSMPTPRSG 39 (47)
T ss_pred CEEEEeCCCC-------CceeeeEEEECCCCCeEccCCCCCCcccc
Confidence 5899999642 11222343 56788899999999877654
No 81
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=87.69 E-value=0.88 Score=34.27 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=26.4
Q ss_pred cCeeEEEcceeeeeecCCCceeeEEEEEEecCCCeEEEeccccccc
Q psy12546 494 LGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYC 539 (765)
Q Consensus 494 ~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~~~~~ 539 (765)
++++|+.||... ......+-.-.++++...|++++++..+++
T Consensus 1 g~~~~vfGG~~~----~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 1 GNKLYVFGGYDD----DGGTRLNDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred CCEEEEECCcCC----CCCCEecCEEEEECCCCEEEECCCCCCCcc
Confidence 578999999652 111112222245678889999988766544
No 82
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.43 E-value=7.8 Score=35.30 Aligned_cols=120 Identities=14% Similarity=0.211 Sum_probs=77.4
Q ss_pred EEEE-ECCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHHHhhhc
Q psy12546 59 TVLI-VQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKK 137 (765)
Q Consensus 59 v~~~-v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~~ 137 (765)
|.+. .+|..|.+.+.| |-||-..+.|+... .+.+ -.|..+.|...+|..+++|+=...-...+...+
T Consensus 4 i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n-~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d--------- 71 (158)
T COG5201 4 IELESIDGEIFRVDENI-AERSILIKNMLCDS-TACN-YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDEND--------- 71 (158)
T ss_pred eEEEecCCcEEEehHHH-HHHHHHHHHHhccc-cccC-CCCcccchhHHHHHHHHHHHHhccccCCCccCh---------
Confidence 4444 378888888765 57888888887432 2222 246677899999999999987655433221100
Q ss_pred cCCCCcchHhHHHhhhcCcccCCccccccccccHHHH--HHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHH
Q psy12546 138 QNKGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAF--KCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSI 215 (765)
Q Consensus 138 ~~~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f--~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c 215 (765)
+.+....|..| +.++.| +.+.++++..+|+++.++.|.++|
T Consensus 72 --------------------------~~~rks~p~D~wdr~Fm~v-----------DqemL~eI~laaNYL~ikpLLd~g 114 (158)
T COG5201 72 --------------------------LEIRKSKPSDFWDRFFMEV-----------DQEMLLEICLAANYLEIKPLLDLG 114 (158)
T ss_pred --------------------------HhhhccCCccHHHHHHHHh-----------hHHHHHHHHHhhccccchHHHHHH
Confidence 11110000000 233332 688999999999999999999999
Q ss_pred HHHHHhhcChhh
Q psy12546 216 SDYLRVILTVHN 227 (765)
Q Consensus 216 ~~~L~~~l~~~n 227 (765)
++.+...+....
T Consensus 115 CKivaemirgkS 126 (158)
T COG5201 115 CKIVAEMIRGKS 126 (158)
T ss_pred HHHHHHHHccCC
Confidence 998877665444
No 83
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=86.63 E-value=1.7 Score=36.49 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcChhhHH
Q psy12546 192 KDDVILDILGLSHKYGFQDLENSISDYLRVILTVHNAC 229 (765)
Q Consensus 192 ~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~~~nv~ 229 (765)
+.+.+++++.+|++++++.|.+.|++.+...+...++-
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~e 49 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPE 49 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HH
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHH
Confidence 57899999999999999999999999998777655443
No 84
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=83.79 E-value=9.9 Score=35.52 Aligned_cols=83 Identities=23% Similarity=0.249 Sum_probs=48.9
Q ss_pred EEEEcCeeEEEcceeee-eecCCCceeeEEEEEEecCCCeEEEec---c--ccc-ccCceEEEEeecc-cEEEEEEEeec
Q psy12546 490 ILIKLGTQAIVNHIKLL-LWDKDLRSYSYFIEVSIDQKKWTRVID---Y--TRF-YCRSWQFLYFPTQ-VVQYIRVVGTN 561 (765)
Q Consensus 490 vvvl~g~iYiiGG~~~~-~~~~~~~~y~y~v~vs~~~~~W~~v~~---~--~~~-~~~~~~~~~f~~~-~~ryI~ivg~~ 561 (765)
+-+-.|.++.|.|+... .|..+.....|.+ +|.+..+|..+.+ . ... ....-....|.+. ..||||++...
T Consensus 47 lqvDLg~~~~v~~i~~qg~~~~~~~~~~~~~-~s~dg~~W~~~~~~~~~~f~gn~d~~~~~~~~~~~~v~ARyvRi~p~~ 125 (139)
T smart00231 47 IQVDLGRTRTVTGVITGGRHGDGDGVTYKLL-YSDDGNNWTTYKDGNSKVFPGNSDAGTVVVNEFPPPIVARYIRILPTG 125 (139)
T ss_pred eEeeccCcEEEEEEEecccCCCCcEEEEEEE-EEeCCCCEeEEeCCCeEEEeCccCCCceEEEecCCCEEEEEEEEEEeE
Confidence 44556777888777653 2433333334555 9999999998742 1 111 1344556678764 68999999862
Q ss_pred CCcceeEEEEEEEEE
Q psy12546 562 NTVNKVFHIVSFEIM 576 (765)
Q Consensus 562 ~~~~~~~~~~~~e~~ 576 (765)
- .... ...+|.|
T Consensus 126 ~--~~~~-~~r~Ely 137 (139)
T smart00231 126 W--NGNI-ILRVELL 137 (139)
T ss_pred c--CCCc-EEEEEEE
Confidence 2 2212 2356765
No 85
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.85 E-value=3 Score=43.13 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=43.4
Q ss_pred cEEEEeeccCCccCCCCeeeecCCC----CeeeecccccCCCCCCCccEEEE-cCeeEEEccee
Q psy12546 446 GTMVMQGEMKNALLNGDVNNYDMEN----GYTRHTITEATSSTSCDNGILIK-LGTQAIVNHIK 504 (765)
Q Consensus 446 ~~~viGG~~~~~~l~~~v~~YD~~~----~~W~~~~~~~m~~~R~~~~vvvl-~g~iYiiGG~~ 504 (765)
.+.++||.... .+.+..|+|.. ..|.+..+ .|..+|.+..+.++ ||++.|+||..
T Consensus 79 ~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~-~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 79 RLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN-DMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc-cccCCCccccceECCCCCEEEEeCcC
Confidence 36778987542 24577788765 68998887 49999999998887 99999999965
No 86
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=82.07 E-value=7 Score=38.58 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=69.1
Q ss_pred CcccccCCCCCcccccCCccEEEecCCceeeccEEEEeee----cCCCeeeEEEEEEecCCcceeeee--ccCccccceE
Q psy12546 620 NTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWD----CDDRSYSYLVDVSINLWDWEIVAD--HTRDLCRSWQ 693 (765)
Q Consensus 620 d~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~----~~~~~y~y~i~vs~d~~~w~~v~~--~~~~~~~~~~ 693 (765)
|..+ ||.+.-.. .+..|+++|.+|-++-+|..=-+. |+-+ .|.|-+++|..++..+-. -.++.....=
T Consensus 31 dqsS-RWss~~~~---~~QyiiLkL~~paiV~sItFGKy~K~HvCNlK--~fkv~gG~~~~~m~ell~~gLkND~~~Etf 104 (199)
T PF06588_consen 31 DQSS-RWSSSSNS---PPQYIILKLESPAIVKSITFGKYEKPHVCNLK--KFKVYGGMDEENMIELLHGGLKNDSNPETF 104 (199)
T ss_pred Cccc-cccCCCCC---CCcEEEEEcCCCeEEEEEeccccccCccccce--eeEEeccCCHHHHHHHHhhhccCCCCCceE
Confidence 5555 89877533 334699999999999999752222 2223 389999999999988865 2233332211
Q ss_pred EEEe-e------cCCEEEEEEEec-cCCcceeEEEEeeeecCCCCC
Q psy12546 694 SISF-S------RRPVVFVRIIGT-HNTMNEVFHCVHFECPDQSIK 731 (765)
Q Consensus 694 ~~~f-~------~~~~~~ir~~~~-~~~~~~~~~~~~~e~~~~~~~ 731 (765)
.+.- . .-|+|||+||=- .=+.|--|-++++|.-+..++
T Consensus 105 ~l~~~~~~~~~~~fP~rYIKIvPL~swGpsFNfSIWyVeL~Gi~dp 150 (199)
T PF06588_consen 105 NLKHKTNNGIENYFPCRYIKIVPLQSWGPSFNFSIWYVELSGIDDP 150 (199)
T ss_pred EeEEecCCcccceeeeeeeEEechhhcCCCCceEEEEEEEeccCCH
Confidence 1111 1 238999999964 335566677889998877553
No 87
>KOG1778|consensus
Probab=81.92 E-value=0.69 Score=49.56 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=100.1
Q ss_pred EEEECCEEEEeehhHHHhcCHHHHHHhcCCccCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHHHhhhccC
Q psy12546 60 VLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQN 139 (765)
Q Consensus 60 ~~~v~~~~~~aHr~ILaarS~yF~~lf~~~~~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~~~~ 139 (765)
++...+..+++|+.+|+..|+.|..+....-..+....+.+..++..++..+..++|.. +...
T Consensus 30 ~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~---------------- 92 (319)
T KOG1778|consen 30 IVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH---------------- 92 (319)
T ss_pred hhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh----------------
Confidence 33445678999999999999999988866533334456777888999998888888876 2111
Q ss_pred CCCcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHH
Q psy12546 140 KGTTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYL 219 (765)
Q Consensus 140 ~~~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L 219 (765)
+ .....+.++.+...|.++.++..|...+
T Consensus 93 -----------------------------------e----------------~~~~~ihll~~~~~~~v~~~~~d~~~~~ 121 (319)
T KOG1778|consen 93 -----------------------------------E----------------MVFFDIHLLALSHVYVVPQPKADCDPIL 121 (319)
T ss_pred -----------------------------------H----------------HHHHHHHHHhhhhhhhccCccccCCccc
Confidence 1 1345566666667777888888777777
Q ss_pred Hh-hcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCc
Q psy12546 220 RV-ILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISE 261 (765)
Q Consensus 220 ~~-~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~ 261 (765)
.. .++..++..++..+..++...|..++...|...+.....+
T Consensus 122 ~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t 164 (319)
T KOG1778|consen 122 ECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQT 164 (319)
T ss_pred cchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc
Confidence 65 6788899999999999999999999999888776555553
No 88
>KOG2716|consensus
Probab=81.06 E-value=3.8 Score=41.78 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=57.9
Q ss_pred chHhHHHhhhcCcc-cCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhh
Q psy12546 144 LTQNFRALLYGGLC-ESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVI 222 (765)
Q Consensus 144 ~S~yF~amf~~~~~-Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~ 222 (765)
...||++|+..++. +.....-.+-|-+|.-|+.+|+||=.|.+. +|+
T Consensus 26 ~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~--------------------LPe------------ 73 (230)
T KOG2716|consen 26 FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVD--------------------LPE------------ 73 (230)
T ss_pred hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhccccc--------------------Ccc------------
Confidence 36799999998874 444444455688999999999998877541 111
Q ss_pred cChhhHHHHHHHHHHcCcHHHHHHHHHHHhcc
Q psy12546 223 LTVHNACSIFDCAYYYDLKQLNKIVLSFIDYN 254 (765)
Q Consensus 223 l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n 254 (765)
+...+.+++.-|..|.+..|.+.|..-+...
T Consensus 74 -~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 74 -SEKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred -chHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 3345566777799999999999999987654
No 89
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=78.56 E-value=6.6 Score=44.41 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=50.9
Q ss_pred EEEecCCc-eeeccEEEEeeecCCCee--eEEEEEEecCCcceee-ee-----ccCcccc-ceEEEEeecCCEEEEEEEe
Q psy12546 640 ILVQLGQP-YMLDSMRLLLWDCDDRSY--SYLVDVSINLWDWEIV-AD-----HTRDLCR-SWQSISFSRRPVVFVRIIG 709 (765)
Q Consensus 640 i~v~l~~~-y~i~~~~~~~w~~~~~~y--~y~i~vs~d~~~w~~v-~~-----~~~~~~~-~~~~~~f~~~~~~~ir~~~ 709 (765)
-++++.+. =.+..++| -|+..++.. .+.||.|-|.++|..+ .| .++..-| .-..|.|+....||.||+-
T Consensus 116 ~Lld~s~~~~~l~~L~L-~w~~~~~~~~~~v~VeaSdDl~~W~~l~~~~~l~~L~~~~~~l~~~~I~L~~~~~rYLRl~~ 194 (429)
T PF13163_consen 116 WLLDLSALKEPLDALRL-DWPQSNFNWQARVSVEASDDLQHWRPLAGDAQLMDLSNGGQRLVQDRIELPGSNARYLRLTW 194 (429)
T ss_pred EEEECcccccchhheEE-EeecCCCCceEEEEEEEecCcccceEccCCceEEEeccCCcceeeeeEccCCCCCceEEEEe
Confidence 47777766 46677776 897666554 7999999999999999 44 2222221 2346899999999999997
No 90
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=74.42 E-value=11 Score=33.34 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=32.1
Q ss_pred chHhHHHhhhcCccc-CCccccccccccHHHHHHHHHhHhcCc
Q psy12546 144 LTQNFRALLYGGLCE-SNQNEIELHDTNIVAFKCLLKYIYSGK 185 (765)
Q Consensus 144 ~S~yF~amf~~~~~E-s~~~~i~l~~v~~~~f~~lL~yiYtg~ 185 (765)
.|..++.|+.+...+ .+...|.+++++..+|+.+++|++...
T Consensus 23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~ 65 (104)
T smart00512 23 QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHV 65 (104)
T ss_pred HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcc
Confidence 478888888754322 223689999999999999999996543
No 91
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=73.92 E-value=30 Score=32.12 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=68.2
Q ss_pred cccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCCCeee-EEEEEEe--cCCcceeeeeccCcccc
Q psy12546 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS-YLVDVSI--NLWDWEIVADHTRDLCR 690 (765)
Q Consensus 614 ~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~-y~i~vs~--d~~~w~~v~~~~~~~~~ 690 (765)
+.|+|||..+| |.|.-+- +..+|.+++.+.-.|..+.+ .-+..|-+|. -.|.|.. +-.+=+.+.+..-....
T Consensus 17 ~~L~D~~~~ty-WQSdG~q---phh~i~l~f~k~v~i~~l~i-~~~~~DeSYtP~~I~V~~G~~~~dL~e~~~v~l~~p~ 91 (129)
T cd08159 17 SRLTDGNYDTY-WQSDGSQ---GSHWIRLFMKKDVLIRVLAI-FVDMADSSYMPSLVVVYGGHSPSDLRELKDVNIRPSN 91 (129)
T ss_pred HHhcCCCCCcc-CCCCCCC---CCEEEEEEEcCCcEEEEEEE-EecCCCCCcCCcEEEEEecCCHHHhheeEEEEecCCC
Confidence 77899999885 8876431 22358999988888999988 3333556655 4555554 33455666666656667
Q ss_pred ceEEEEee-cCCEEEEEEEec---cCCcceeEE
Q psy12546 691 SWQSISFS-RRPVVFVRIIGT---HNTMNEVFH 719 (765)
Q Consensus 691 ~~~~~~f~-~~~~~~ir~~~~---~~~~~~~~~ 719 (765)
+|-.+.|. +.-..||+|.-. .||.....|
T Consensus 92 Gwv~i~~~~~~~~~~iqI~I~~nhqnG~DthiR 124 (129)
T cd08159 92 GWVALLEDDTLKCPYIEIRIKRCRSDGIDTRIR 124 (129)
T ss_pred ceEEEEcCCcEEEEEEEEEEHHhccCCccceee
Confidence 89999887 456788999877 445544444
No 92
>KOG2715|consensus
Probab=73.64 E-value=12 Score=35.84 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=41.3
Q ss_pred cEEEEECCEEEEeehhHHHhcCHHHH-HHhcCCccC---CCCeeEEecCCCHHHHHHHHHHHhcCCcccc
Q psy12546 58 DTVLIVQNEKISVHKVILAARSEYFR-ALLYGGLCE---SNQNEIELHDTNIVAFKCLLKYIYSGKLSFR 123 (765)
Q Consensus 58 Dv~~~v~~~~~~aHr~ILaarS~yF~-~lf~~~~~e---s~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~ 123 (765)
=|.|-|||+.|---|.-|+.-+.-|. .+....+.- ....---+-|-+|..|-.+|+|+-.|++.++
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~ 91 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLN 91 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhh
Confidence 36677899999999999988774554 444433211 1111223336678888777777776666543
No 93
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=70.45 E-value=76 Score=34.15 Aligned_cols=171 Identities=16% Similarity=0.138 Sum_probs=96.2
Q ss_pred CCCeEEEecccccccCceEEEEeec---ccEEEEEEEeecCCcceeEEEEEEEEEeeccc-ccccCCccccc--CCcccc
Q psy12546 525 QKKWTRVIDYTRFYCRSWQFLYFPT---QVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQT-VQLSEEGIIIP--KHNVAT 598 (765)
Q Consensus 525 ~~~W~~v~~~~~~~~~~~~~~~f~~---~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~p--~~nva~ 598 (765)
...|+.+-+.+. |+..+.-+|.. ++...||+----+|--.. +-+|..... |.. ..+ .-|+|.
T Consensus 110 ~~~W~ell~~t~--l~~~~~h~f~v~~~~~~THvRLni~PDGGiaR-----lRvyG~~~~d~~~-----~~~~~~~DLaa 177 (322)
T TIGR02961 110 STEWVELLPRTE--LGPSQHHYFEVSSKQRFTHIRLNIYPDGGIAR-----LRVYGIVVPDWSL-----LDADETVDLAA 177 (322)
T ss_pred CCCCcEeecccc--cCCCceeeEEcCCCCceEEEEEEEECCCCeee-----EEeeccccCCccc-----cccccccceee
Confidence 446999987763 34455556652 344566655444443332 223322211 221 111 236777
Q ss_pred cccceeEeecc----cccccccccCCcccccCCCCCccc---ccCCccEEEecCCceeeccEEEEeeecCCCeee----E
Q psy12546 599 RELSAKVVEGV----SRSLSSLIDGNTVKYDWDSGYTCH---QLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS----Y 667 (765)
Q Consensus 599 ~~~~~~~~~g~----~~~~~~~~~gd~~~~~w~~g~~~~---~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~----y 667 (765)
......|+.=. +...|-|..|...+ |..||-.- ..|..+++|+||.|=+|.+|.+ |+..-..+ .
T Consensus 178 ~~nGg~vl~~sD~~fg~~~Nli~pg~~~~--mgDGWETrRrR~pG~DW~IvkLg~~G~I~~i~V---DT~~FkGN~P~~~ 252 (322)
T TIGR02961 178 LENGGVVVACSDAHFGHPDNLIGPGRGRN--MGDGWETARRRDPGNDWAIVRLGAPGEIERIEV---DTAHFKGNYPDSC 252 (322)
T ss_pred cccCCEEEEecccccCCHHHccCCCcccc--cccCcceeeccCCCCCEEEEEcCCCCeEEEEEE---eCCccCCCCCCeE
Confidence 77766665321 22335566665433 44555332 2344589999999999999988 66654444 3
Q ss_pred EEEEEe-----------cCCcceeeeeccCccccceEEEEe----ecCCEEEEEEEeccCC
Q psy12546 668 LVDVSI-----------NLWDWEIVADHTRDLCRSWQSISF----SRRPVVFVRIIGTHNT 713 (765)
Q Consensus 668 ~i~vs~-----------d~~~w~~v~~~~~~~~~~~~~~~f----~~~~~~~ir~~~~~~~ 713 (765)
.||-.. +...|..+...++-.. .-+..++ ..+++..||+.---++
T Consensus 253 si~a~~~~~~~~~~~~~~~~~W~~llp~t~l~~-~~~h~f~~~~~~~~~~THvRlnI~PDG 312 (322)
T TIGR02961 253 SLQAADLEGGEDEQLITQSMFWVELLPRTKLGP-DTEHVFESSLAASGPVTHVRLNIIPDG 312 (322)
T ss_pred EEEEEeCCCCCchhhhccCCCceEcccccccCC-CcEeeecccccCCCceEEEEEEEECCC
Confidence 333221 1336999988877766 4344444 4578899998766554
No 94
>KOG3473|consensus
Probab=68.33 E-value=11 Score=32.56 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=50.9
Q ss_pred chHhHHHhhhcCc--ccCCccccccccccHHHHHHHHHhH-----hcCc-eecc--cCChhHHHHHHHHHhhhC
Q psy12546 144 LTQNFRALLYGGL--CESNQNEIELHDTNIVAFKCLLKYI-----YSGK-LSFR--NLKDDVILDILGLSHKYG 207 (765)
Q Consensus 144 ~S~yF~amf~~~~--~Es~~~~i~l~~v~~~~f~~lL~yi-----Ytg~-i~l~--~~~~~~vl~ll~~A~~~~ 207 (765)
.|+-.||||.|.. .|....++.++++..-.++.+.+|+ |++. ..+. +++++.++++|.+|+++.
T Consensus 38 tSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 38 TSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 4888999999765 5666779999999999999999998 5554 2211 357899999999998764
No 95
>KOG1724|consensus
Probab=68.11 E-value=21 Score=34.51 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=66.7
Q ss_pred hHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHhhcC
Q psy12546 145 TQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRVILT 224 (765)
Q Consensus 145 S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~~l~ 224 (765)
|...++++...-.......|+|+.++...|+.+++|++..+-.-....... + . -...++..-=.+||+ ++
T Consensus 27 s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~--~---~---~~~~~i~~WD~~Flk--~d 96 (162)
T KOG1724|consen 27 SQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDK--E---L---PEETDIPEWDAEFLK--VD 96 (162)
T ss_pred hHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccc--c---c---cccCCccHHHHHHHh--cC
Confidence 555566665433333337899999999999999999988553211000000 0 0 000113333345655 78
Q ss_pred hhhHHHHHHHHHHcCcHHHHHHHHHHHhccc
Q psy12546 225 VHNACSIFDCAYYYDLKQLNKIVLSFIDYNA 255 (765)
Q Consensus 225 ~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~ 255 (765)
..++.+++.+|..++++.|.+.|++.+....
T Consensus 97 ~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 97 QGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988754
No 96
>KOG4152|consensus
Probab=67.84 E-value=5.3 Score=44.58 Aligned_cols=200 Identities=12% Similarity=0.078 Sum_probs=95.8
Q ss_pred EEEeeccCCccCCCCeeeecCCCCeeeecccc--cCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEEEEecC
Q psy12546 448 MVMQGEMKNALLNGDVNNYDMENGYTRHTITE--ATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQ 525 (765)
Q Consensus 448 ~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~--~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~ 525 (765)
+++||-+... ..+.+.|+-.+|+|.- ++- -.|.+-..||.+-.+.+||+.||+.-. =+++..-| |..-.+
T Consensus 46 viFGGGNEGi--iDELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdGtrilvFGGMvEY-GkYsNdLY----ELQasR 117 (830)
T KOG4152|consen 46 VIFGGGNEGI--IDELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDGTRILVFGGMVEY-GKYSNDLY----ELQASR 117 (830)
T ss_pred EEecCCcccc--hhhhhhhccccceeec-chhcCCCCCchhhcceEecCceEEEEccEeee-ccccchHH----Hhhhhh
Confidence 4467755432 2568899999999992 210 133344458889999999999997431 01111111 111223
Q ss_pred CCeEEEeccccc----ccCceEEEEeecccEEEEEEEeec-CCcce--------eEEEEEEEEEeeccc--ccccC--Cc
Q psy12546 526 KKWTRVIDYTRF----YCRSWQFLYFPTQVVQYIRVVGTN-NTVNK--------VFHIVSFEIMYTAQT--VQLSE--EG 588 (765)
Q Consensus 526 ~~W~~v~~~~~~----~~~~~~~~~f~~~~~ryI~ivg~~-~~~~~--------~~~~~~~e~~~~~~~--~~~~~--~~ 588 (765)
-.|.++-+.+.. -|.-.-. .|.. +..--|+-||- |..++ .-++-.+|.-.-+.. |.+.. ..
T Consensus 118 WeWkrlkp~~p~nG~pPCPRlGH-SFsl-~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv 195 (830)
T KOG4152|consen 118 WEWKRLKPKTPKNGPPPCPRLGH-SFSL-VGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGV 195 (830)
T ss_pred hhHhhcCCCCCCCCCCCCCccCc-eeEE-eccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCC
Confidence 468888764322 1211000 1111 11223333432 21111 113444554323332 55543 23
Q ss_pred ccccCCcc-ccc-------ccceeEeecccccccc-cccCCcccccCCCCCcc---cccCCc-cEEEecCCceeeccEEE
Q psy12546 589 IIIPKHNV-ATR-------ELSAKVVEGVSRSLSS-LIDGNTVKYDWDSGYTC---HQLGSG-AILVQLGQPYMLDSMRL 655 (765)
Q Consensus 589 ~~~p~~nv-a~~-------~~~~~~~~g~~~~~~~-~~~gd~~~~~w~~g~~~---~~~~~~-~i~v~l~~~y~i~~~~~ 655 (765)
+..|++.. |++ +.+..|-+|-+.+|=- |--=|..+..|+.--.. +.+++- ...+--.+.|+.|+-.-
T Consensus 196 ~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVP 275 (830)
T KOG4152|consen 196 LPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVP 275 (830)
T ss_pred CCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceee
Confidence 45565543 433 2334566776654411 00003444558754322 122222 35666778899988654
Q ss_pred Ee
Q psy12546 656 LL 657 (765)
Q Consensus 656 ~~ 657 (765)
|+
T Consensus 276 l~ 277 (830)
T KOG4152|consen 276 LV 277 (830)
T ss_pred ee
Confidence 44
No 97
>KOG2437|consensus
Probab=67.83 E-value=7.7 Score=43.37 Aligned_cols=79 Identities=8% Similarity=0.148 Sum_probs=51.0
Q ss_pred cEEEEeeccCCc-----cCCCCeeeecCCCCeeeecccccCCCC-------CCCccEEEEcCe--eEEEcceeeeeecCC
Q psy12546 446 GTMVMQGEMKNA-----LLNGDVNNYDMENGYTRHTITEATSST-------SCDNGILIKLGT--QAIVNHIKLLLWDKD 511 (765)
Q Consensus 446 ~~~viGG~~~~~-----~l~~~v~~YD~~~~~W~~~~~~~m~~~-------R~~~~vvvl~g~--iYiiGG~~~~~~~~~ 511 (765)
.+|++|-+-+++ ....+.|.||..++.|. +.+ |... --+|+++|.+.+ +|+.||.. |+.+
T Consensus 326 KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~-~ls--~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~---~~~~ 399 (723)
T KOG2437|consen 326 KLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWM-LLS--EDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI---LTCN 399 (723)
T ss_pred HHhhhhhccccccccccccccceEEEecCCceeE-Eec--ccccccCCcceeecceeeEecCcceEEEecCee---ccCC
Confidence 467777654332 23568999999999998 433 3332 236899999888 99999975 4454
Q ss_pred Ccee--eEEEEEEecCCCeEEEe
Q psy12546 512 LRSY--SYFIEVSIDQKKWTRVI 532 (765)
Q Consensus 512 ~~~y--~y~v~vs~~~~~W~~v~ 532 (765)
...| .|. +++....|...+
T Consensus 400 e~~f~GLYa--f~~~~~~w~~l~ 420 (723)
T KOG2437|consen 400 EPQFSGLYA--FNCQCQTWKLLR 420 (723)
T ss_pred CccccceEE--EecCCccHHHHH
Confidence 3333 221 245556676655
No 98
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=66.25 E-value=19 Score=35.87 Aligned_cols=108 Identities=22% Similarity=0.321 Sum_probs=64.0
Q ss_pred ccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeee-cCCCeee---EEEEEEecCCcceeeeeccCcccc
Q psy12546 615 SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWD-CDDRSYS---YLVDVSINLWDWEIVADHTRDLCR 690 (765)
Q Consensus 615 ~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~-~~~~~y~---y~i~vs~d~~~w~~v~~~~~~~~~ 690 (765)
.|.|||+.+ .|.|.-. | +.+|-|++.+--.|..|.|.+ | ..|-+|- -.|.+.++-.+++.+....-....
T Consensus 50 ~LrD~~~~T-yWQSDG~--q--pH~I~i~f~k~v~I~~l~iyv-d~~~DeSYtPs~I~V~aG~~~~dl~e~~~v~l~~p~ 123 (193)
T PF03256_consen 50 LLRDGSTET-YWQSDGS--Q--PHWITIQFHKRVIISSLSIYV-DYKQDESYTPSKISVRAGNSPHDLQEVKTVELEEPN 123 (193)
T ss_dssp HCHSS-TT---EE--SS--S--SEEEEEEEEEEEEE-EEEEEE-EHHHHGGGSEEEEEEEEESSTTT-EEEEEEEECC-E
T ss_pred eeeCCChhH-hhccCCC--C--CEEEEEEEcCCcEEEEEEEEE-ccCcCCCCCceEEEEEEeCCcCceEEEEEEEecCCC
Confidence 444999999 5998532 1 346999999999999999843 3 2345554 445555566688888876666677
Q ss_pred ceEEEEeec---CC--EEEEEEEec---cCCcceeEEEEeeeecCC
Q psy12546 691 SWQSISFSR---RP--VVFVRIIGT---HNTMNEVFHCVHFECPDQ 728 (765)
Q Consensus 691 ~~~~~~f~~---~~--~~~ir~~~~---~~~~~~~~~~~~~e~~~~ 728 (765)
+|..+.+.. .+ +.||+|.-. .||.....|.+.+-.|..
T Consensus 124 GWv~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~ 169 (193)
T PF03256_consen 124 GWVHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRP 169 (193)
T ss_dssp EEEEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE--
T ss_pred ccEEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCC
Confidence 999998852 33 458998876 446655666444444444
No 99
>KOG2437|consensus
Probab=65.87 E-value=8.4 Score=43.07 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=83.6
Q ss_pred cEEEEeeccCCccCCCCeeeecCCCCeeeeccccc-CCCCCCCccEEEEcC--eeEEEcceeeeee--cCCCceeeEEEE
Q psy12546 446 GTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEA-TSSTSCDNGILIKLG--TQAIVNHIKLLLW--DKDLRSYSYFIE 520 (765)
Q Consensus 446 ~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~-m~~~R~~~~vvvl~g--~iYiiGG~~~~~~--~~~~~~y~y~v~ 520 (765)
-+|+-||+++...+ .+.|.|....|.|...-... .|-.|+.|-+|+-.. ++|..|-.-..-- ..+.|+ -.-+
T Consensus 274 CiYLYGGWdG~~~l-~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~Rs--DfW~ 350 (723)
T KOG2437|consen 274 CVYLYGGWDGTQDL-ADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRS--DFWR 350 (723)
T ss_pred EEEEecCcccchhH-HHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccccccccc--ceEE
Confidence 37889999998766 68999999999998532211 466788899998877 8999997533211 111222 2224
Q ss_pred EEecCCCeEEEecccccccCceEEEEeec-ccE----EEEEEEeecCCcceeEEEEEEEEEee-cccccc
Q psy12546 521 VSIDQKKWTRVIDYTRFYCRSWQFLYFPT-QVV----QYIRVVGTNNTVNKVFHIVSFEIMYT-AQTVQL 584 (765)
Q Consensus 521 vs~~~~~W~~v~~~~~~~~~~~~~~~f~~-~~~----ryI~ivg~~~~~~~~~~~~~~e~~~~-~~~~~~ 584 (765)
.+.+++.|..+.--+.. -+| ....|.- .+| +.|++-||+....+..-...+-++.. ..+|..
T Consensus 351 FDi~~~~W~~ls~dt~~-dGG-P~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 351 FDIDTNTWMLLSEDTAA-DGG-PKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred EecCCceeEEecccccc-cCC-cceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 55678889877532221 122 2333443 232 47999999988877544445555533 244554
No 100
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=62.95 E-value=1.5e+02 Score=31.30 Aligned_cols=60 Identities=23% Similarity=0.169 Sum_probs=39.3
Q ss_pred eeeecCCCCee-eecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCce-eeEEEEEEecCC
Q psy12546 463 VNNYDMENGYT-RHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRS-YSYFIEVSIDQK 526 (765)
Q Consensus 463 v~~YD~~~~~W-~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~-y~y~v~vs~~~~ 526 (765)
|.-.|.+-+.. .|.+++ +..+-+.|-..+.++.+|++||..+. .+.|. ..|.+.|.+...
T Consensus 133 VfLiDleFGC~tah~lpE-l~dG~SFHvslar~D~VYilGGHsl~---sd~Rpp~l~rlkVdLllG 194 (337)
T PF03089_consen 133 VFLIDLEFGCCTAHTLPE-LQDGQSFHVSLARNDCVYILGGHSLE---SDSRPPRLYRLKVDLLLG 194 (337)
T ss_pred EEEEeccccccccccchh-hcCCeEEEEEEecCceEEEEccEEcc---CCCCCCcEEEEEEeecCC
Confidence 44567777744 345553 67778888888899999999998765 22222 246666665433
No 101
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=61.70 E-value=11 Score=30.09 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=29.3
Q ss_pred chHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhc
Q psy12546 144 LTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYS 183 (765)
Q Consensus 144 ~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYt 183 (765)
.|..++.|+.+...+.. .|+|++++...|+.+++|++.
T Consensus 22 ~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 22 QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 48889999975333332 899999999999999999864
No 102
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=57.31 E-value=9.5 Score=32.97 Aligned_cols=67 Identities=21% Similarity=0.389 Sum_probs=44.9
Q ss_pred HhHHHhhhcC---cccCCccccccccccHHHHHHHHHhHhc-CceecccCChhHHHHHHHHHhhhCcHHH-HHHH
Q psy12546 146 QNFRALLYGG---LCESNQNEIELHDTNIVAFKCLLKYIYS-GKLSFRNLKDDVILDILGLSHKYGFQDL-ENSI 215 (765)
Q Consensus 146 ~yF~amf~~~---~~Es~~~~i~l~~v~~~~f~~lL~yiYt-g~i~l~~~~~~~vl~ll~~A~~~~l~~L-~~~c 215 (765)
.+|.+|+.+. .....+.++-| |-+|+.|+.+|+|+-+ +.+... +...+..++.-|.+|+++.| .+.|
T Consensus 23 s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~--~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 23 SLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIP--DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp STTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-----TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCC--CchhHHHHHHHHHHcCCCccccCCC
Confidence 3677788754 33344455544 7899999999999999 566542 35567888899999999888 5554
No 103
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=57.16 E-value=2.4e+02 Score=32.59 Aligned_cols=123 Identities=13% Similarity=0.074 Sum_probs=75.8
Q ss_pred CcccccccceeEeecc----cccccccccCCcccccCCCCCccc---ccCCccEEEecCCceeeccEEEEeeecCCCeee
Q psy12546 594 HNVATRELSAKVVEGV----SRSLSSLIDGNTVKYDWDSGYTCH---QLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS 666 (765)
Q Consensus 594 ~nva~~~~~~~~~~g~----~~~~~~~~~gd~~~~~w~~g~~~~---~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~ 666 (765)
-|+|...+...++.=. +...|-+..|... +|..||-.- ..|..|++|+||.|=+|.+|.+ |+..-.++
T Consensus 185 ~dLa~~~nGg~v~~~sD~~fg~~~nli~pg~~~--~mgDGWETrRrR~pg~Dw~iv~Lg~~G~I~~v~v---DT~~FkGN 259 (516)
T PRK13797 185 SDLAAAYLGGVVVAASDMHYGDRHNLNASGDAR--AMGEGWETRRRRGPGHDWAVVRLATQGTIVRAEV---DTRHFRGN 259 (516)
T ss_pred cchhhhccCCEEEEecccccCCHHHccCCCCcc--cccccccccccCCCCCCEEEEEeCCCCEEEEEEE---eCCccCCC
Confidence 3666666666665221 1223556666543 366666442 3344589999999999999998 76664445
Q ss_pred E----EEEEEe-c----------CCcceeeeeccCccccceEEEEe---ecCCEEEEEEEeccCCcceeEEEEee
Q psy12546 667 Y----LVDVSI-N----------LWDWEIVADHTRDLCRSWQSISF---SRRPVVFVRIIGTHNTMNEVFHCVHF 723 (765)
Q Consensus 667 y----~i~vs~-d----------~~~w~~v~~~~~~~~~~~~~~~f---~~~~~~~ir~~~~~~~~~~~~~~~~~ 723 (765)
| .|+.-. + ...|..+...++-..- ..-+| .++++..||+..--++--..+.+.-.
T Consensus 260 ~P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~~~l~~~--~~h~f~~~~~~~~THvrl~i~PDGGvsRlRv~G~ 332 (516)
T PRK13797 260 APRAVALWAADAPDLLDPDDLAAITEWRPLLPRTRVQPN--TRHLFDLEVPVQATHVRVDAIPDGGLARLRLTGA 332 (516)
T ss_pred CCCeEEEEEEecCCCCchhhhccCCCceEcCCCcccCCC--ceeeeecCCCCCceEEEEEEECCCCeeeEEEeee
Confidence 3 333321 1 2359999987776553 34556 36788999998887776444444433
No 104
>PF13854 Kelch_5: Kelch motif
Probab=56.29 E-value=11 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=19.9
Q ss_pred CcEEEEeeccC-CccCCCCeeeecCCC
Q psy12546 445 MGTMVMQGEMK-NALLNGDVNNYDMEN 470 (765)
Q Consensus 445 ~~~~viGG~~~-~~~l~~~v~~YD~~~ 470 (765)
+.+|+.||++. +....++++.||..+
T Consensus 15 ~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 15 NNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CEEEEEcCccCCCCCEECcEEEEECCC
Confidence 45899999994 555567899888765
No 105
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.48 E-value=27 Score=37.76 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=54.6
Q ss_pred CCCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceee-eeecCCCceeeEEEEEEecCCCeEEEecccccc
Q psy12546 460 NGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKL-LLWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFY 538 (765)
Q Consensus 460 ~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~-~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~~~~ 538 (765)
+.+|..|||..+.|+..-. ..-.+++..+++.-++++-.|.|.-- .++ ....+...+-.+..+|..+.+..-..
T Consensus 195 n~ev~sy~p~~n~W~~~G~-~pf~~~aGsa~~~~~n~~~lInGEiKpGLR----t~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGE-NPFYGNAGSAVVIKGNKLTLINGEIKPGLR----TAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred cccccccccccchhhhcCc-CcccCccCcceeecCCeEEEEcceecCCcc----ccceeEEEeccCceeeeeccCCCCCC
Confidence 4578899999999996554 24578899888889998888888521 111 12234445556778999998887766
Q ss_pred cCc
Q psy12546 539 CRS 541 (765)
Q Consensus 539 ~~~ 541 (765)
|..
T Consensus 270 ~~~ 272 (381)
T COG3055 270 GSN 272 (381)
T ss_pred CCC
Confidence 544
No 106
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=50.09 E-value=2e+02 Score=26.84 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=64.9
Q ss_pred cccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCCCeee-EEEEEEec--CCcceeeeeccCc-cc
Q psy12546 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS-YLVDVSIN--LWDWEIVADHTRD-LC 689 (765)
Q Consensus 614 ~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~-y~i~vs~d--~~~w~~v~~~~~~-~~ 689 (765)
+.|+|||..+| |.|.-+ .++.+|-+++..--.|-.+.+.+ |..|-+|- -.|.|..- -.+=..+....-. ..
T Consensus 17 ~~L~D~~~~TY-WQSDG~---q~pH~I~i~f~~~v~i~~l~i~v-~~~DeSYtPs~I~I~~G~~~~dL~e~~~v~l~~~~ 91 (131)
T cd08667 17 DRMTDGETSTY-WQSDGS---ARSHWIRLKMKPDVVLRHLSIAV-AATDQSYMPQQVTVSVGRSASSLQEVRDVHIPSNV 91 (131)
T ss_pred HHhhcCCCCcc-CccCCC---CCCeEEEEEecCCeEEEEEEEEE-cCCCCCcCCcEEEEEecCCHhhheeeEEEEcCCCC
Confidence 77899999985 998753 23446999999999999988855 45566665 45666553 3344445444432 23
Q ss_pred cceEEEEee-cCCEEEEEEEec---cCCcceeEE
Q psy12546 690 RSWQSISFS-RRPVVFVRIIGT---HNTMNEVFH 719 (765)
Q Consensus 690 ~~~~~~~f~-~~~~~~ir~~~~---~~~~~~~~~ 719 (765)
-+|..+... +.-..||+|.-. .|+.....|
T Consensus 92 ~Gwv~l~~~~~~~~~~iqI~I~~nhqnG~DthIR 125 (131)
T cd08667 92 TGYVTLLENANISYLVVQINIKRCHSDGCDTRIH 125 (131)
T ss_pred ceeEEEEcCCceEEEEEEEEeHHhccCCccceee
Confidence 378888543 344567888777 445444433
No 107
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=49.37 E-value=1.5e+02 Score=30.08 Aligned_cols=113 Identities=9% Similarity=0.059 Sum_probs=56.6
Q ss_pred CCeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEEEEecCCCeEEEecccccccC
Q psy12546 461 GDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYCR 540 (765)
Q Consensus 461 ~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~~~~~~ 540 (765)
..++.|+..++.|+.... +.+.......-+.++|.+|=+..... .+....-+.+++..+.|....++......
T Consensus 70 ~~~~Vys~~~~~Wr~~~~-~~~~~~~~~~~v~~~G~lyw~~~~~~------~~~~~~IvsFDl~~E~f~~~i~~P~~~~~ 142 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIEC-SPPHHPLKSRGVCINGVLYYLAYTLK------TNPDYFIVSFDVSSERFKEFIPLPCGNSD 142 (230)
T ss_pred ccEEEEEeCCCCcccccc-CCCCccccCCeEEECCEEEEEEEECC------CCCcEEEEEEEcccceEeeeeecCccccc
Confidence 468999999999996543 11111111225677888888764221 11112455677788889853333322221
Q ss_pred ceEEEEeecccEEEEEEEeecCCcceeEEEEEEEEEeeccccc
Q psy12546 541 SWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQ 583 (765)
Q Consensus 541 ~~~~~~f~~~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~~~~~ 583 (765)
......+..- .+.+-++......+ .++++.+|-+ ..+.|.
T Consensus 143 ~~~~~~L~~~-~G~L~~v~~~~~~~-~~~IWvl~d~-~~~~W~ 182 (230)
T TIGR01640 143 SVDYLSLINY-KGKLAVLKQKKDTN-NFDLWVLNDA-GKQEWS 182 (230)
T ss_pred cccceEEEEE-CCEEEEEEecCCCC-cEEEEEECCC-CCCcee
Confidence 2222222211 24455555433222 2666666643 223365
No 108
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=45.93 E-value=2.5e+02 Score=26.12 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=60.4
Q ss_pred cccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCCCeee-EEEEEEecCC-cc--eeeeeccCccc
Q psy12546 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS-YLVDVSINLW-DW--EIVADHTRDLC 689 (765)
Q Consensus 614 ~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~-y~i~vs~d~~-~w--~~v~~~~~~~~ 689 (765)
+.|+|||..+| |.|.-+ .|+.+|-+++.+-=.|..+.+++ +..|-+|- -.|.|..-.. +. +.+....-...
T Consensus 17 ~~L~D~~~~ty-WQSdG~---q~pH~I~i~f~k~v~I~~l~i~v-~~~DeSYtPs~I~V~~G~~~~dL~~e~~~V~~~~~ 91 (131)
T cd08665 17 NKLTDGNPKTY-WESNGS---TGSHYINIHMHRGVVIRQLYMLV-ASEDSSYMPARVVVLGGDSPSCITTELNAVNVSPT 91 (131)
T ss_pred HHhhcCCCCce-EccCCC---CCCeEEEEEECCCcEEEEEEEEe-cCCCCCcCCeeEEEEecCCHHHhhheeEEEEccCC
Confidence 77999999885 987753 35667999999999999999877 56667666 6677766333 22 23444433334
Q ss_pred cceEEEEeec-CCEEEEEEEecc
Q psy12546 690 RSWQSISFSR-RPVVFVRIIGTH 711 (765)
Q Consensus 690 ~~~~~~~f~~-~~~~~ir~~~~~ 711 (765)
-+|-.+.-.. +--.||+|.=..
T Consensus 92 ~g~v~ll~~~~~~~~~iqI~I~~ 114 (131)
T cd08665 92 ASRVVLLENMTRFWPIIQIRIKR 114 (131)
T ss_pred cceEEEcccCcccceEEEEEEhh
Confidence 4665542221 222468887653
No 109
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=42.49 E-value=2.1e+02 Score=26.60 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=60.5
Q ss_pred cccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCCCeee-EEEEEEecC--CcceeeeeccCccc-
Q psy12546 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS-YLVDVSINL--WDWEIVADHTRDLC- 689 (765)
Q Consensus 614 ~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~-y~i~vs~d~--~~w~~v~~~~~~~~- 689 (765)
+.|+|||..+| |.|.-+ .|+.+|-+++..--.|..+.|.+ |-.|-+|. -.|.|.... .+=..+....-...
T Consensus 18 ~~L~D~~~~ty-WQSDG~---q~pH~I~i~f~k~v~i~~l~l~v-d~~DeSYtP~~I~V~~G~~~~dL~e~~~v~v~~~~ 92 (131)
T cd08365 18 SRLTDGNTSTY-WQSDGS---QGSHWIRLKMKPDVLVRHLSLAV-DATDSSYMPQRVVVAGGRSASNLQELRDVNIPPSV 92 (131)
T ss_pred HHhhcCCCCce-EccCCC---CCCEEEEEEEcCCcEEEEEEEEe-cCCCCCCCCcEEEEEecCCHHHheeEEEEEccCCC
Confidence 77999999984 987743 24456999999998999998854 34455555 445544422 33334444333323
Q ss_pred cceEEEEee-cCCEEEEEEEec---cCCcceeEE
Q psy12546 690 RSWQSISFS-RRPVVFVRIIGT---HNTMNEVFH 719 (765)
Q Consensus 690 ~~~~~~~f~-~~~~~~ir~~~~---~~~~~~~~~ 719 (765)
-+|=.+... +....||+|.-. .||.....|
T Consensus 93 ~g~v~ll~~~~~~~~~iqI~I~~nhqnG~DthiR 126 (131)
T cd08365 93 TGYVTLLEDATISQPYIEIRIKRCRSDGIDTRIH 126 (131)
T ss_pred ceeEEEccCCceeeEEEEEEEHHHccCCccceee
Confidence 355544222 334578888877 445444443
No 110
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=39.86 E-value=3.4e+02 Score=29.38 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=54.5
Q ss_pred CCccEEEecCCceeeccEEEEeeecCCCeeeE----EEEEEe----------cCCcceeeeeccCccccceEEEEee---
Q psy12546 636 GSGAILVQLGQPYMLDSMRLLLWDCDDRSYSY----LVDVSI----------NLWDWEIVADHTRDLCRSWQSISFS--- 698 (765)
Q Consensus 636 ~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~y----~i~vs~----------d~~~w~~v~~~~~~~~~~~~~~~f~--- 698 (765)
|..+++|+||.|=+|.++.+ |+..-.-+| .||... +...|+.+...+.-.. + +.-+|.
T Consensus 60 g~DW~ivkLg~~G~I~~v~v---DTa~F~GN~p~~~siea~~~~~~~~~~~~~~~~W~ell~~t~l~~-~-~~h~f~v~~ 134 (322)
T TIGR02961 60 GHDWCIVRLGVPGVIHGVDI---DTSFFTGNYPPAVSIEACLSPEPSPEILLDSTEWVELLPRTELGP-S-QHHYFEVSS 134 (322)
T ss_pred CCCEEEEEeCCCcEEEEEEE---eCcccCCCCCCeEEEEEEeCCCCCccccccCCCCcEeecccccCC-C-ceeeEEcCC
Confidence 33479999999999999998 666533343 444332 2346999998777655 3 445565
Q ss_pred cCCEEEEEEEeccCCcceeEEE
Q psy12546 699 RRPVVFVRIIGTHNTMNEVFHC 720 (765)
Q Consensus 699 ~~~~~~ir~~~~~~~~~~~~~~ 720 (765)
.+++..||+..--++--..|.+
T Consensus 135 ~~~~THvRLni~PDGGiaRlRv 156 (322)
T TIGR02961 135 KQRFTHIRLNIYPDGGIARLRV 156 (322)
T ss_pred CCceEEEEEEEECCCCeeeEEe
Confidence 6788999998887775334443
No 111
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=39.85 E-value=89 Score=29.89 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCccEEEecCCceeeccEEEEeeecCCCeee----EEEEEE------------ecCCcceeeeeccCccccceEEEEe--
Q psy12546 636 GSGAILVQLGQPYMLDSMRLLLWDCDDRSYS----YLVDVS------------INLWDWEIVADHTRDLCRSWQSISF-- 697 (765)
Q Consensus 636 ~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~----y~i~vs------------~d~~~w~~v~~~~~~~~~~~~~~~f-- 697 (765)
|..+++|+||.|=.|-+|.+ |+..-..+ ..||.. .+...|..+...+.-.. .-+..+.
T Consensus 50 g~DW~IikLg~~G~I~~i~I---DT~~F~GN~P~~~sv~~~~~~~~~~~~~~~~~~~~W~~llp~~~l~~-~~~h~f~~~ 125 (152)
T PF03561_consen 50 GHDWAIIKLGAPGVIRGIEI---DTAHFKGNYPPSVSVEGAYLPDDDDPEIIELDSEEWVELLPRTKLGP-DKRHYFKLE 125 (152)
T ss_dssp T-EEEEEE-SSSCEEEEEEE---E-TT-SSSB-SEEEEEEE--SS----S---TT-TTEEEEEEEEE--T-T-EEEEE-T
T ss_pred CCCEEEEECCCCCEEEEEEE---ecccccCCCCCEEEEEEEEcCCCcccccccccCCCceEeecceEcCC-CcccEeccc
Confidence 33479999999988888887 66552222 333332 24558999998777666 3343333
Q ss_pred --ecCCEEEEEEEeccCC
Q psy12546 698 --SRRPVVFVRIIGTHNT 713 (765)
Q Consensus 698 --~~~~~~~ir~~~~~~~ 713 (765)
..+++.+||+..--++
T Consensus 126 ~~~~~~~THvRl~i~PDG 143 (152)
T PF03561_consen 126 INNEKPFTHVRLNIYPDG 143 (152)
T ss_dssp ECECS-BSEEEEEEESS-
T ss_pred cCCCCceeEEEEEEeCCC
Confidence 3678899998765544
No 112
>PRK13257 allantoicase; Provisional
Probab=38.41 E-value=2.1e+02 Score=31.09 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=54.8
Q ss_pred CCccEEEecCCceeeccEEEEeeecCCCeeeE----EEEEEec-------CCcceeeeeccCccccceEEEEee---cCC
Q psy12546 636 GSGAILVQLGQPYMLDSMRLLLWDCDDRSYSY----LVDVSIN-------LWDWEIVADHTRDLCRSWQSISFS---RRP 701 (765)
Q Consensus 636 ~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~y----~i~vs~d-------~~~w~~v~~~~~~~~~~~~~~~f~---~~~ 701 (765)
|..|++|+||.|=.|.++.+ |+..-.-+| .||.... ...|+.+...+.-.. . +.-+|. +++
T Consensus 75 g~DW~IirLg~~G~I~~v~V---DTa~F~GN~p~~~siea~~~~~~~~~~~~~W~ellp~~~l~p-~-~~h~f~v~~~~~ 149 (336)
T PRK13257 75 GHDWAIVRLGVPGVIRGVDV---DTAHFTGNYPPAASVEACYVPDGYPSDAAEWTEIVPATTLQG-D-SHHYFEVDDARR 149 (336)
T ss_pred CCCEEEEEcCCCcEEEEEEE---eccccCCCCCCeEEEEEEecCCCCCccCCCceEeccccccCC-C-cEeeEEcCCCCc
Confidence 44479999999999999998 666533343 3443322 235999998776655 3 334444 578
Q ss_pred EEEEEEEeccCCcceeEEEEe
Q psy12546 702 VVFVRIIGTHNTMNEVFHCVH 722 (765)
Q Consensus 702 ~~~ir~~~~~~~~~~~~~~~~ 722 (765)
+..||+..--++--..|.+.-
T Consensus 150 ~THvRLniyPDGGvaRlRv~G 170 (336)
T PRK13257 150 FTHVRLNIYPDGGVARLRVYG 170 (336)
T ss_pred eEEEEEEEECCCCeeEEEEee
Confidence 899999888777644555443
No 113
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=37.99 E-value=99 Score=33.65 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=46.4
Q ss_pred CCcccccccceeEeecc---cccccccccCCcccccCCCCCcccccCC-------ccEEEecCCceeeccEEEEeeec
Q psy12546 593 KHNVATRELSAKVVEGV---SRSLSSLIDGNTVKYDWDSGYTCHQLGS-------GAILVQLGQPYMLDSMRLLLWDC 660 (765)
Q Consensus 593 ~~nva~~~~~~~~~~g~---~~~~~~~~~gd~~~~~w~~g~~~~~~~~-------~~i~v~l~~~y~i~~~~~~~w~~ 660 (765)
..|++.....+-++.|. -|+...|+||...+.|=..-|.++-..+ ..|.|...+|..|+.|| .|..
T Consensus 224 ~~~i~a~p~~v~~l~~~~~d~r~~~~Li~~~~~t~d~~~~Wlap~~~~~~~~~~~~~i~~~f~~p~~is~ir--iwNY 299 (329)
T PF14652_consen 224 PNNITAFPPSVNVLPGYTDDPRTPDKLIDGVNNTCDDRHMWLAPFLPGLNDNEQPNVIYFIFDEPVTISMIR--IWNY 299 (329)
T ss_pred hhheeccCcccccCcccccCccchhhcccCccCCCCcccceeccccCCccccccccEEEEEeCCCeEEEEEE--EEec
Confidence 46777666666676554 3677889999666655444455544433 36999999999999999 4874
No 114
>KOG3840|consensus
Probab=34.70 E-value=1.8e+02 Score=30.82 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=37.7
Q ss_pred CccEEEEECCEEEEeehhHHHhcC-HHHHHHhcCCccC---CCCeeEEec-CCCHHHHHHHHHHHhcCCc
Q psy12546 56 FSDTVLIVQNEKISVHKVILAARS-EYFRALLYGGLCE---SNQNEIELH-DTNIVAFKCLLKYIYSGKL 120 (765)
Q Consensus 56 ~sDv~~~v~~~~~~aHr~ILaarS-~yF~~lf~~~~~e---s~~~~I~l~-~v~~~~f~~lL~ylYtg~l 120 (765)
---++..+++.+|-+-+.+|.+.- ...-.||.+++.- ....+.++. +++...|+++|+|--+|.+
T Consensus 95 ~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~i 164 (438)
T KOG3840|consen 95 GDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTM 164 (438)
T ss_pred CcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCce
Confidence 335778889999999999886442 1245566554321 112344443 4666667555555555544
No 115
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=34.11 E-value=4e+02 Score=24.96 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=59.2
Q ss_pred cccccCCcccccCCCCCcccccCCccEEEecCCceeeccEEEEeeecCCCeee-EEEEEEec-CCcceeeeeccCccc-c
Q psy12546 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS-YLVDVSIN-LWDWEIVADHTRDLC-R 690 (765)
Q Consensus 614 ~~~~~gd~~~~~w~~g~~~~~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~-y~i~vs~d-~~~w~~v~~~~~~~~-~ 690 (765)
+.|+|||..+| |.|.-+ .|+.+|-+++..-=.|..+.+.+ |-.+-+|- -.|.|..- ..+-+.+.+..-... -
T Consensus 22 ~~L~D~~~~ty-WQSdG~---qgpH~I~l~f~~~v~i~~l~i~v-~~~DeSYtP~~I~V~~G~~~dL~ei~~V~i~~~~~ 96 (134)
T cd08666 22 SCLTDGDPDTY-WESDGS---QGQHWIRLHMKKGTIIKKLLLTV-DATDDNYMPKRVAVYGGEGDNLKKLNDVSIDETLI 96 (134)
T ss_pred HHhccCCCCcc-EecCCC---CCCeEEEEEECCCcEeeEEEEEe-cCCCCCcCCcEEEEEecCccChhheEEEEeCCCCC
Confidence 77999999885 987642 45667999998888898888743 22445444 34444432 334445544443332 2
Q ss_pred ceEEEEeecCCEE--EEEEEec---cCCcceeEE
Q psy12546 691 SWQSISFSRRPVV--FVRIIGT---HNTMNEVFH 719 (765)
Q Consensus 691 ~~~~~~f~~~~~~--~ir~~~~---~~~~~~~~~ 719 (765)
+|=.+ .++-... ||+|.-. .|+.....|
T Consensus 97 g~V~i-l~~~~~~~~~iqI~I~~nhqnG~DthIR 129 (134)
T cd08666 97 GDVCI-LEDMTTHLPVIEIRIKECKDEGIDVRIR 129 (134)
T ss_pred CeEEE-ecCCceEeEEEEEEeHHhccCCccceee
Confidence 45555 3443443 5777766 445544444
No 116
>KOG2723|consensus
Probab=33.44 E-value=1.2e+02 Score=31.01 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=34.7
Q ss_pred CCccEE-EEECCEEEEeehhHH-HhcCHHHHHHhcCCccC--CCCeeEEecCCCHHHHHHHHHHHhcCCc
Q psy12546 55 EFSDTV-LIVQNEKISVHKVIL-AARSEYFRALLYGGLCE--SNQNEIELHDTNIVAFKCLLKYIYSGKL 120 (765)
Q Consensus 55 ~~sDv~-~~v~~~~~~aHr~IL-aarS~yF~~lf~~~~~e--s~~~~I~l~~v~~~~f~~lL~ylYtg~l 120 (765)
.+.|++ +-|||+.+..-..-| +-.-....+||.+...- ..+...-| +-+-..|+.||+||-|..+
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l 74 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKAL 74 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhccccc
Confidence 455655 557887776555423 33344566666652211 11223444 5566677777777766433
No 117
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=32.69 E-value=2.2e+02 Score=29.79 Aligned_cols=128 Identities=14% Similarity=0.214 Sum_probs=85.2
Q ss_pred cHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcH-HHHHHHHHHHHhhcChhhHHHHHHHH------HHcCcHH
Q psy12546 170 NIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQ-DLENSISDYLRVILTVHNACSIFDCA------YYYDLKQ 242 (765)
Q Consensus 170 ~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~-~L~~~c~~~L~~~l~~~nv~~il~~A------~~~~~~~ 242 (765)
....++.++.-+-..+-.+ +...++.+|.+|..++.. ..+...+..+...|...++-++|.-+ ..|.++-
T Consensus 69 ~r~llEtiV~lLP~e~~sv---sc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~ 145 (258)
T PF03000_consen 69 QRELLETIVSLLPPEKGSV---SCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDL 145 (258)
T ss_pred HHHHHHHHHHhCCCCCCcc---cHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHH
Confidence 3455577777777766655 488999999999999874 56666777777788888888877766 4567777
Q ss_pred HHHHHHHHHhcc------------------cccccC----cccc-------ccCCHHHHHHHhccCCC--CCCHHHHHHH
Q psy12546 243 LNKIVLSFIDYN------------------AKQIIS----ENSF-------YNLSQNGLIQLIQRDSF--YAPEIDIFRA 291 (765)
Q Consensus 243 L~~~c~~fi~~n------------------~~~v~~----~~~f-------~~L~~~~l~~ll~~d~l--~v~E~~l~~a 291 (765)
+......|+... -..+.. .+.| .+|+...+..|...=.- ....+.|++|
T Consensus 146 V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrA 225 (258)
T PF03000_consen 146 VQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRA 225 (258)
T ss_pred HHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHH
Confidence 777777777751 000000 0111 25667766666643222 2236689999
Q ss_pred HHHHHhhCC
Q psy12546 292 VVDWIKANS 300 (765)
Q Consensus 292 v~~Wi~~n~ 300 (765)
+..|++.+.
T Consensus 226 ID~YLk~Hp 234 (258)
T PF03000_consen 226 IDIYLKAHP 234 (258)
T ss_pred HHHHHHHcc
Confidence 999999884
No 118
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=29.85 E-value=32 Score=36.87 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=65.3
Q ss_pred CEEEEeehhHHHhcCHHHHHHhcCCc---cCCCCeeEEecCCCHHHHHHHHHHHhcCCccccCcchhHHHHHhhhccCCC
Q psy12546 65 NEKISVHKVILAARSEYFRALLYGGL---CESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKG 141 (765)
Q Consensus 65 ~~~~~aHr~ILaarS~yF~~lf~~~~---~es~~~~I~l~~v~~~~f~~lL~ylYtg~l~~~~~~~~~ll~i~~~~~~~~ 141 (765)
.+.|.+.+..|-..=.||+..+.... .+...-.|.+ .-+-.+|
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF--------------------------------- 58 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIF--------------------------------- 58 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHH---------------------------------
Confidence 46799999999999999999996522 2222223333 4566777
Q ss_pred CcchHhHHHhhhcCcccCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHHHHHHHHHHh
Q psy12546 142 TTLTQNFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDYLRV 221 (765)
Q Consensus 142 ~~~S~yF~amf~~~~~Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~~~c~~~L~~ 221 (765)
+=|++|+....-. +++.|++.+|..+++++|++|.+.|..|+..
T Consensus 59 ---------------------------------~WLm~yv~~~~p~---l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~ 102 (317)
T PF11822_consen 59 ---------------------------------EWLMRYVKGEPPS---LTPSNVVSILISSEFLQMESLVEECLQYCHD 102 (317)
T ss_pred ---------------------------------HHHHHHhhcCCCc---CCcCcEEEeEehhhhhccHHHHHHHHHHHHH
Confidence 4455555443333 3689999999999999999999999999966
Q ss_pred hc
Q psy12546 222 IL 223 (765)
Q Consensus 222 ~l 223 (765)
++
T Consensus 103 ~~ 104 (317)
T PF11822_consen 103 HM 104 (317)
T ss_pred hH
Confidence 54
No 119
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=29.78 E-value=99 Score=25.78 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=34.8
Q ss_pred hcChhhHHHHHHHHHHcCcHHHHHHHHHHHhcccccccCccccccCCHHHHHHHhc
Q psy12546 222 ILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQ 277 (765)
Q Consensus 222 ~l~~~nv~~il~~A~~~~~~~L~~~c~~fi~~n~~~v~~~~~f~~L~~~~l~~ll~ 277 (765)
.++.+..++++.+|..+++..|.+.|..++...+. ..+.+.+..++.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~---------gks~eeir~~fg 56 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK---------GKSPEEIRKYFG 56 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT---------TS-HHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc---------CCCHHHHHHHcC
Confidence 55778899999999999999999999999987653 235566666654
No 120
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=29.14 E-value=5.3e+02 Score=27.09 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=62.2
Q ss_pred CeeeecCCCCeeeecccccCCCCCCCccEEEEcCeeEEEcceee--eeecCCCceeeEEEEEEecCCCeEEEecccc-cc
Q psy12546 462 DVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKL--LLWDKDLRSYSYFIEVSIDQKKWTRVIDYTR-FY 538 (765)
Q Consensus 462 ~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvvl~g~iYiiGG~~~--~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~~-~~ 538 (765)
.+..||+.+++-..... ++..--.=|+++++++||..==... ..||.+ +..-.-++.-..+.|=...+... ..
T Consensus 69 ~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~--tl~~~~~~~y~~EGWGLt~dg~~Li~ 144 (264)
T PF05096_consen 69 SLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN--TLKKIGTFPYPGEGWGLTSDGKRLIM 144 (264)
T ss_dssp EEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESSSSEEEEEETT--TTEEEEEEE-SSS--EEEECSSCEEE
T ss_pred EEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEecCCeEEEEccc--cceEEEEEecCCcceEEEcCCCEEEE
Confidence 57899999997665444 5554455679999999998643221 234433 33333345567889998887544 45
Q ss_pred cCceEEEEeec----ccEEEEEEEeecCCcceeEEEEEEEEE
Q psy12546 539 CRSWQFLYFPT----QVVQYIRVVGTNNTVNKVFHIVSFEIM 576 (765)
Q Consensus 539 ~~~~~~~~f~~----~~~ryI~ivg~~~~~~~~~~~~~~e~~ 576 (765)
+.|-..|+|-. ...|.|.+...... +-.+.++|++
T Consensus 145 SDGS~~L~~~dP~~f~~~~~i~V~~~g~p---v~~LNELE~i 183 (264)
T PF05096_consen 145 SDGSSRLYFLDPETFKEVRTIQVTDNGRP---VSNLNELEYI 183 (264)
T ss_dssp E-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE
T ss_pred ECCccceEEECCcccceEEEEEEEECCEE---CCCcEeEEEE
Confidence 56667788876 26788887743333 3347788886
No 121
>KOG0278|consensus
Probab=28.88 E-value=82 Score=32.52 Aligned_cols=51 Identities=18% Similarity=0.063 Sum_probs=34.5
Q ss_pred CCcEEEEeeccCCccCCCCeeeecCCCCeeeecccccCCCCCCCccEEE-----EcCeeEEEcceeee
Q psy12546 444 KMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILI-----KLGTQAIVNHIKLL 506 (765)
Q Consensus 444 ~~~~~viGG~~~~~~l~~~v~~YD~~~~~W~~~~~~~m~~~R~~~~vvv-----l~g~iYiiGG~~~~ 506 (765)
+.+.||.||++. -+.+||-.++.=+..- ...++|-|- -+|-+|++|..++.
T Consensus 235 ~k~~fVaGged~------~~~kfDy~TgeEi~~~------nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 235 KKEFFVAGGEDF------KVYKFDYNTGEEIGSY------NKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CCceEEecCcce------EEEEEeccCCceeeec------ccCCCCceEEEEECCCCceeeccCCCce
Confidence 347999999875 4788898887644221 234444322 39999999997664
No 122
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.22 E-value=8.4e+02 Score=25.88 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=52.0
Q ss_pred CCeeeecCCCCeeeecccccCCCCCCC--ccEEE-EcCeeEEEcceeeeeecCCCceeeEEEEEEecCCCeEEEeccc-c
Q psy12546 461 GDVNNYDMENGYTRHTITEATSSTSCD--NGILI-KLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYT-R 536 (765)
Q Consensus 461 ~~v~~YD~~~~~W~~~~~~~m~~~R~~--~~vvv-l~g~iYiiGG~~~~~~~~~~~~y~y~v~vs~~~~~W~~v~~~~-~ 536 (765)
..+..||+...+|...-. .-.. ..+.. -++++||.|-+... + ..-.+...+..+.+.|+.+.... .
T Consensus 16 ~~lC~yd~~~~qW~~~g~-----~i~G~V~~l~~~~~~~Llv~G~ft~~--~---~~~~~la~yd~~~~~w~~~~~~~s~ 85 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-----GISGTVTDLQWASNNQLLVGGNFTLN--G---TNSSNLATYDFKNQTWSSLGGGSSN 85 (281)
T ss_pred CEEEEEECCCCEeecCCC-----CceEEEEEEEEecCCEEEEEEeeEEC--C---CCceeEEEEecCCCeeeecCCcccc
Confidence 356779999999994433 1111 22332 37888888865432 1 12334556678889999988743 3
Q ss_pred cccCceEEEEeecccEEEEEEEee
Q psy12546 537 FYCRSWQFLYFPTQVVQYIRVVGT 560 (765)
Q Consensus 537 ~~~~~~~~~~f~~~~~ryI~ivg~ 560 (765)
..-.....+.+...-..-+.+-|.
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGR 109 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEece
Confidence 444454555554443333444554
No 123
>PRK13257 allantoicase; Provisional
Probab=25.06 E-value=9.2e+02 Score=26.29 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=95.5
Q ss_pred CCeEEEecccccccCceEEEEeec---ccEEEEEEEeecCCcceeEEEEEEEEEeeccc-ccccCCcccccCCccccccc
Q psy12546 526 KKWTRVIDYTRFYCRSWQFLYFPT---QVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQT-VQLSEEGIIIPKHNVATREL 601 (765)
Q Consensus 526 ~~W~~v~~~~~~~~~~~~~~~f~~---~~~ryI~ivg~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~p~~nva~~~~ 601 (765)
..|+.+.+.+. |+..+.-+|.. .+...||+----+|--..|. +|..... |... ..-.-++|...+
T Consensus 123 ~~W~ellp~~~--l~p~~~h~f~v~~~~~~THvRLniyPDGGvaRlR-----v~G~~~~d~~~~----~~~~iDLaa~~n 191 (336)
T PRK13257 123 AEWTEIVPATT--LQGDSHHYFEVDDARRFTHVRLNIYPDGGVARLR-----VYGEPQPDWAFL----DAGEVDLAALEN 191 (336)
T ss_pred CCceEeccccc--cCCCcEeeEEcCCCCceEEEEEEEECCCCeeEEE-----EeeeecCChhhc----cccccchhhhhc
Confidence 36999987663 44445556652 23455665544444333322 2222111 2211 011246676666
Q ss_pred ceeEeecc----cccccccccCCcccccCCCCCccc---ccCCccEEEecCCceeeccEEEEeeecCCCeee----EEEE
Q psy12546 602 SAKVVEGV----SRSLSSLIDGNTVKYDWDSGYTCH---QLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYS----YLVD 670 (765)
Q Consensus 602 ~~~~~~g~----~~~~~~~~~gd~~~~~w~~g~~~~---~~~~~~i~v~l~~~y~i~~~~~~~w~~~~~~y~----y~i~ 670 (765)
...++.=. +...|-|+.|... +|..||-.- ..|..|++|+||.|=+|..|.+ |+..-..+ ..||
T Consensus 192 Gg~v~~~SD~hfg~~~Nll~Pg~~~--~mgDGWETrRrR~pG~DW~iikLg~~G~I~~ieV---DT~~FkGN~P~~~si~ 266 (336)
T PRK13257 192 GGRVVACSNQHFGSPSNLLLPGRGV--NMGDGWETRRRREPGNDWVIVALAAPGVIRKIEV---DTAHFKGNFPDRCSLQ 266 (336)
T ss_pred CCEEEEecccccCCHHHeeCCCccc--ccccccccccccCCCCCEEEEEcCCCCEEEEEEE---eCcccCCCCCCeEEEE
Confidence 66665221 2333566666654 466666442 2234489999999999999988 66554434 3333
Q ss_pred EEe-----------cCCcceeeeeccCccccceEEEEee-----cCCEEEEEEEeccCCc
Q psy12546 671 VSI-----------NLWDWEIVADHTRDLCRSWQSISFS-----RRPVVFVRIIGTHNTM 714 (765)
Q Consensus 671 vs~-----------d~~~w~~v~~~~~~~~~~~~~~~f~-----~~~~~~ir~~~~~~~~ 714 (765)
--. +...|..+...++-.. .-+. +|. .+++..||+.---++-
T Consensus 267 ~~~~~~~~~~~~~~~~~~W~~Llp~tkl~p-d~~h-~F~~~~~~~~~~THvRl~I~PDGG 324 (336)
T PRK13257 267 AAYVEGGTDSSLITQSMFWPELLPEQKLQM-DTRH-RFEAELAALGPVTHVRLNIFPDGG 324 (336)
T ss_pred EEecCCCcccccccccCcCeEcccccccCC-CcEe-eecccccCCCceEEEEEEEECCCC
Confidence 221 2235999988777666 3343 443 5788999987665553
No 124
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=24.66 E-value=2.1e+02 Score=26.59 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=37.4
Q ss_pred EEEecC-CceeeccEEEEeeecCCCeeeEEEEEEecC-CcceeeeeccCcc-------ccceEEEEee
Q psy12546 640 ILVQLG-QPYMLDSMRLLLWDCDDRSYSYLVDVSINL-WDWEIVADHTRDL-------CRSWQSISFS 698 (765)
Q Consensus 640 i~v~l~-~~y~i~~~~~~~w~~~~~~y~y~i~vs~d~-~~w~~v~~~~~~~-------~~~~~~~~f~ 698 (765)
-.|..| ++|.|-|.- |+.+.|. ==.||||+|+ ++|...--..... .-+|...+|+
T Consensus 20 ~~v~~~~~~v~i~G~A---~~g~g~~-I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~ 83 (131)
T PF03404_consen 20 ETVKAGDGTVTIRGYA---WSGGGRG-IARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYD 83 (131)
T ss_dssp EEEESESEEEEEEEEE---E-STT---EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEE
T ss_pred CEEccCCcEEEEEEEE---EeCCCcc-eEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeec
Confidence 466777 888888865 6876632 3589999995 5699887766655 4588888877
No 125
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=24.49 E-value=1.1e+02 Score=27.02 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=41.8
Q ss_pred ccEEEEeeec---CCCeeeEEEEEE-ecCCcceeee---eccCccccceEEEEeecCCEEEEEEEeccCC
Q psy12546 651 DSMRLLLWDC---DDRSYSYLVDVS-INLWDWEIVA---DHTRDLCRSWQSISFSRRPVVFVRIIGTHNT 713 (765)
Q Consensus 651 ~~~~~~~w~~---~~~~y~y~i~vs-~d~~~w~~v~---~~~~~~~~~~~~~~f~~~~~~~ir~~~~~~~ 713 (765)
|---+|.|+- ......|.||.. ..+..|+.|. ..+...| .......++...=++||....++
T Consensus 34 nf~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~C-dlt~~~~~~~~~Y~~rV~A~~~~ 102 (107)
T PF01108_consen 34 NFKHILRWDPGPGSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSC-DLTDETSDPSESYYARVRAEVGN 102 (107)
T ss_dssp TTEEEEEEEESTTSSSTEEEEEEEEESSTSCEEEECCEEEESSSEE-ECTTCCTTTTSEEEEEEEEEETT
T ss_pred CCceEEEeCCCCCCCCCeEEEEEEEecCCcceeeccceecccccce-eCcchhhcCcCCEEEEEEEEeCC
Confidence 3345679997 336667999999 7888999993 3445666 43333344667778888776444
No 126
>KOG2714|consensus
Probab=23.47 E-value=1.2e+02 Score=33.81 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=45.3
Q ss_pred HhHHHhhhcCcc-cCCccccccccccHHHHHHHHHhHhcCceecccCChhHHHHHHHHHhhhCcHHHH
Q psy12546 146 QNFRALLYGGLC-ESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLE 212 (765)
Q Consensus 146 ~yF~amf~~~~~-Es~~~~i~l~~v~~~~f~~lL~yiYtg~i~l~~~~~~~vl~ll~~A~~~~l~~L~ 212 (765)
.+|.+++++.|. ++...-..+-|-+|+.|..||+|+-||.+.++.. .....+..-|.+|++..|.
T Consensus 36 SffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~--~~~~llhdEA~fYGl~~ll 101 (465)
T KOG2714|consen 36 SFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGV--FPERLLHDEAMFYGLTPLL 101 (465)
T ss_pred hHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccC--chhhhhhhhhhhcCcHHHH
Confidence 479999998875 4445556777899999999999999999987521 1222233356666665554
No 127
>PLN02772 guanylate kinase
Probab=21.36 E-value=1.5e+02 Score=33.08 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=45.0
Q ss_pred CCCCCccEEEEcCeeEEEcceeeeeecCCCceeeEEEE-EEecCCCeEEEec-ccccc-cCceEEEEeecccEEEEEEEe
Q psy12546 483 STSCDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIE-VSIDQKKWTRVID-YTRFY-CRSWQFLYFPTQVVQYIRVVG 559 (765)
Q Consensus 483 ~~R~~~~vvvl~g~iYiiGG~~~~~~~~~~~~y~y~v~-vs~~~~~W~~v~~-~~~~~-~~~~~~~~f~~~~~ryI~ivg 559 (765)
.++..+.++++++++|++||..- ....+..+. ++....+|..-.- .+.+. |.| + .+..-...-|.|++
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d------~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G-h--Sa~v~~~~rilv~~ 93 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHE------GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG-Y--SAVVLNKDRILVIK 93 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCC------CccccceEEEEECCCCcEecccccCCCCCCCCc-c--eEEEECCceEEEEe
Confidence 36788899999999999999432 111222333 3345568887652 12221 222 1 01111125677777
Q ss_pred ecCCcceeEEEEEEEE
Q psy12546 560 TNNTVNKVFHIVSFEI 575 (765)
Q Consensus 560 ~~~~~~~~~~~~~~e~ 575 (765)
.-.+.+++ +|=+|+
T Consensus 94 ~~~~~~~~--~w~l~~ 107 (398)
T PLN02772 94 KGSAPDDS--IWFLEV 107 (398)
T ss_pred CCCCCccc--eEEEEc
Confidence 66666653 444554
No 128
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=21.34 E-value=2.3e+02 Score=31.36 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=37.3
Q ss_pred EEecCCceeeccEEEEeeecCCCeeeEEEEEEecC-CcceeeeeccCccccceEEEEee
Q psy12546 641 LVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSINL-WDWEIVADHTRDLCRSWQSISFS 698 (765)
Q Consensus 641 ~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~vs~d~-~~w~~v~~~~~~~~~~~~~~~f~ 698 (765)
.+..|+++.|.|+- |+.+.. ==.||||+|+ +.|+..--.......+|+...|+
T Consensus 270 ~~~~~~~~~i~G~A---~~G~~~--I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~ 323 (367)
T cd02114 270 IVAPAGELALRGIA---FDGGSG--IRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLT 323 (367)
T ss_pred EecCCCeEEEEEEE---EcCCCC--EEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEE
Confidence 45678899999864 776443 3579999995 58998854333444578988775
No 129
>KOG2445|consensus
Probab=21.23 E-value=1e+03 Score=25.55 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=46.9
Q ss_pred EEEecCCcceeeeeccCccccceEEEEeecCCEEEEEEEeccCCcceeEEEEeeeecCCCCCCCCCCCCCCccccc
Q psy12546 670 DVSINLWDWEIVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNTMNEVFHCVHFECPDQSIKLPSAGQPSPSCLSV 745 (765)
Q Consensus 670 ~vs~d~~~w~~v~~~~~~~~~~~~~~~f~~~~~~~ir~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 745 (765)
|-.-+...|.+|+......| -...|.|.|--.|--.++.|...- ..++++++.--.+- ...+..+|....+
T Consensus 205 e~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~kD--gv~I~~v~~~~s~i--~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVATKD--GVRIFKVKVARSAI--EEEEVLAPDLMTD 275 (361)
T ss_pred EecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEeecC--cEEEEEEeeccchh--hhhcccCCCCccc
Confidence 56667789999999888878 778899999888766666554332 26777777433222 4445555555443
No 130
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=20.30 E-value=72 Score=30.42 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=51.1
Q ss_pred ecccccccccccCCcccccCCCCCcccccCCc--cEEEecCCceeeccEEEEeeecCCCeeeEEEEEEe----------c
Q psy12546 607 EGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSG--AILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSI----------N 674 (765)
Q Consensus 607 ~g~~~~~~~~~~gd~~~~~w~~g~~~~~~~~~--~i~v~l~~~y~i~~~~~~~w~~~~~~y~y~i~vs~----------d 674 (765)
++-.+...+||++|+.. .|-.+ ..|.. .+++||.+|..|++|++-++ + |-+|||=. |
T Consensus 15 ed~~~~A~NLL~~d~~r-~W~~~----~~gek~~~V~lQl~~~~~I~~IDIGN~----g--SAfiEVlVg~S~~~~~~~~ 83 (153)
T PF01834_consen 15 EDPVHPAENLLKSDTYR-KWKCA----KAGEKQASVELQLEKASQITSIDIGNE----G--SAFIEVLVGRSSWSSTASD 83 (153)
T ss_dssp S-SSSHGGGGSCGGGCH-HEEHS----STT-SEEEEEEEEEEEE--SEEEEEEE----B---SEEEEEEE-STTS--SSG
T ss_pred CCCCCchhhccCcccCC-ccccc----CCCCceEEEEEEecCceEEEEEeccCC----C--eEEEEEEeeccccccccCC
Confidence 44455568889988643 45533 45555 59999999999999998222 2 44567622 4
Q ss_pred CCcceeeee---ccCccccceE----EEEeecC---------CEEEEEEEeccC
Q psy12546 675 LWDWEIVAD---HTRDLCRSWQ----SISFSRR---------PVVFVRIIGTHN 712 (765)
Q Consensus 675 ~~~w~~v~~---~~~~~~~~~~----~~~f~~~---------~~~~ir~~~~~~ 712 (765)
+.-|..+.. .+..++|.+. .=.|.+. --.-||||.|+-
T Consensus 84 ~~f~~Ll~~ssfMsp~eSk~~~n~nrVr~F~~~~l~~~~~~~kWDrvkivC~QP 137 (153)
T PF01834_consen 84 QDFEVLLPSSSFMSPSESKNGTNRNRVRMFGKDKLNKAAAEEKWDRVKIVCSQP 137 (153)
T ss_dssp GGSEEEEEEEESS-HHHHHHTSSTTEEEEE-TTTS-HHHHHS-EEEEEEEEE-T
T ss_pred CCcEEEEeccCCcCHHHHhCcCCcceeEeechhhcChhhhhcCccEEEEEEeCC
Confidence 445666655 3334443332 2334432 235677777743
No 131
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=20.25 E-value=4e+02 Score=28.30 Aligned_cols=108 Identities=12% Similarity=0.210 Sum_probs=55.0
Q ss_pred EEEE-eeccCCccCCCCeeee--cCCC-Cee-------eecccccCCCCCCCccEEEE--cCe--eEEEcceeeeeecCC
Q psy12546 447 TMVM-QGEMKNALLNGDVNNY--DMEN-GYT-------RHTITEATSSTSCDNGILIK--LGT--QAIVNHIKLLLWDKD 511 (765)
Q Consensus 447 ~~vi-GG~~~~~~l~~~v~~Y--D~~~-~~W-------~~~~~~~m~~~R~~~~vvvl--~g~--iYiiGG~~~~~~~~~ 511 (765)
.|+| ||+..++.++.+...- |... |+- .+++.+ .|.+|-+|.+-|+ -|+ ..+.||....
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGd-vP~aRYGHt~~vV~SrGKta~VlFGGRSY~----- 113 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGD-VPEARYGHTINVVHSRGKTACVLFGGRSYM----- 113 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCC-CCcccccceEEEEEECCcEEEEEECCcccC-----
Confidence 4554 8888777665554433 2222 111 235553 7888988887554 333 5666774321
Q ss_pred CceeeEEEEEEecCCCeEEEecccc--------cccCceE-------EEEeeccc--EEEEEEEeecCCccee
Q psy12546 512 LRSYSYFIEVSIDQKKWTRVIDYTR--------FYCRSWQ-------FLYFPTQV--VQYIRVVGTNNTVNKV 567 (765)
Q Consensus 512 ~~~y~y~v~vs~~~~~W~~v~~~~~--------~~~~~~~-------~~~f~~~~--~ryI~ivg~~~~~~~~ 567 (765)
---.-..++|..|.|..- +.|-+-. -..|.... ..-|||.||+.-.++.
T Consensus 114 -------P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~ 179 (337)
T PF03089_consen 114 -------PPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDS 179 (337)
T ss_pred -------CccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCC
Confidence 000012346777775311 1121101 12333333 3589999999877654
Done!