RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12546
(765 letters)
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 111 bits (279), Expect = 3e-27
Identities = 40/207 (19%), Positives = 85/207 (41%), Gaps = 20/207 (9%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIV------AFKCLLKYIYSGKLSFRNLKDDVILDILG 201
F LL G ES +E+ + + +++Y+Y+G++ + + ++L
Sbjct: 61 FTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI---RVSTGSVHEVLE 117
Query: 202 LSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISE 261
L+ ++ L+ ++L+ L + N +I A+ Y L QL I N ++I +
Sbjct: 118 LADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQD 177
Query: 262 NSFYNLSQNGLIQLIQRDSFYAP-EIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEI 320
FY L + + + E +F V+ W++ N+ E R +E+
Sbjct: 178 EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEE---------RERY-FEEL 227
Query: 321 LTYVRLPLISLDELLTTVRSSGIISAD 347
+RL + L V+ +++ +
Sbjct: 228 FKLLRLSQMKPTYLTRHVKPERLVANN 254
Score = 80.0 bits (198), Expect = 1e-16
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 39 HVQFLSEMIGNLYLNDEFSDTVLI---VQNEKISVHKVILAARSEYFRALLYGGLCESNQ 95
H LS F D L + H+ +LAA +EYF LL G ES
Sbjct: 15 HCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRS 74
Query: 96 NEIELHDTNIV------AFKCLLKYIYSGKL 120
+E+ + + +++Y+Y+G++
Sbjct: 75 GRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI 105
Score = 31.1 bits (71), Expect = 1.1
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 384 MDEILTYVRLPLISLDELLTTVRSSGIISAD 414
+E+ +RL + L V+ +++ +
Sbjct: 224 FEELFKLLRLSQMKPTYLTRHVKPERLVANN 254
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 106 bits (268), Expect = 5e-26
Identities = 38/200 (19%), Positives = 86/200 (43%), Gaps = 16/200 (8%)
Query: 148 FRALL--YGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHK 205
R L + + +IEL +++ + +L YI+SG++ L +D I D++ +
Sbjct: 57 IRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI---RLNEDTIQDVVQAADL 113
Query: 206 YGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFY 265
DL+ ++L + N I D A +Y L ++ + +++ + + + S F
Sbjct: 114 LLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFL 173
Query: 266 NLSQNGLIQLIQRDSFYAP-EIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYV 324
LS L ++I + E +F AV+ WI ++ R +M ++++ +
Sbjct: 174 ELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEI---------RKV-HMKDVMSAL 223
Query: 325 RLPLISLDELLTTVRSSGII 344
+ + L + + ++
Sbjct: 224 WVSGLDSSYLREQMLNEPLV 243
Score = 83.8 bits (208), Expect = 5e-18
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALL--YGGLCESNQ 95
+H L + + F D L++ E+I V K ILAA S Y R L + +
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 72
Query: 96 NEIELHDTNIVAFKCLLKYIYSGKL 120
+IEL +++ + +L YI+SG++
Sbjct: 73 YKIELEGISVMVMREILDYIFSGQI 97
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 104 bits (261), Expect = 6e-26
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 7 DMSSNSHSVLPSVGMSPCTSTTGTTNHSYEIEHVQFLSEMIGNLYLNDEFSDTVLIVQNE 66
S + + V + C L++ +G L+ N F+D L V +
Sbjct: 2 SGGSGGQNTMNMVKVPECR-----------------LADELGGLWENSRFTDCCLCVAGQ 44
Query: 67 KISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLK 126
+ HK ILAARS F A+ + ES +N +E++D FK ++ +IY+GK
Sbjct: 45 EFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---PNL 101
Query: 127 DDVILDIL 134
D + D+L
Sbjct: 102 DKMADDLL 109
Score = 97.3 bits (243), Expect = 1e-23
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A+ + ES +N +E++D FK ++ +IY+GK D + D+L + KY
Sbjct: 60 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---PNLDKMADDLLAAADKYA 116
Query: 208 FQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIIS 260
+ L+ D L L+V NA I A + QL + FI+Y+A ++
Sbjct: 117 LERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 169
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 101 bits (254), Expect = 2e-25
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 43 LSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHD 102
L++ +G L+ N F+D L V ++ HK ILAARS F A+ + ES +N +E++D
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 71
Query: 103 TNIVAFKCLLKYIYSGKL 120
FK ++ +IY+GK
Sbjct: 72 VEPEVFKEMMCFIYTGKA 89
Score = 78.0 bits (193), Expect = 3e-17
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A+ + ES +N +E++D FK ++ +IY+GK D + D+L + KY
Sbjct: 51 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---PNLDKMADDLLAAADKYA 107
Query: 208 FQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQL 243
+ L+ D L L+V NA I A + QL
Sbjct: 108 LERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 92.2 bits (230), Expect = 1e-22
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 49 NLYLNDEFSDTVLIV----QNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTN 104
+++ N+ +D +V + HK +LA S F A+ YG L E EI + D
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKS-EIHIPDVE 59
Query: 105 IVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
AF LLKY+YS ++ +L+ D +L L
Sbjct: 60 PAAFLILLKYMYSDEI---DLEADTVLATL 86
Score = 66.1 bits (162), Expect = 2e-13
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A+ YG L E EI + D AF LLKY+YS ++ +L+ D +L L + KY
Sbjct: 38 FYAMFYGDLAEVKS-EIHIPDVEPAAFLILLKYMYSDEI---DLEADTVLATLYAAKKYI 93
Query: 208 FQDLENSISDYLR 220
L + ++L
Sbjct: 94 VPALAKACVNFLE 106
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 89.5 bits (223), Expect = 2e-21
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
+H + + D V++V+ + H+ +LAA S+YF+ L G QN
Sbjct: 7 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNV 66
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
E+ + A L+ + Y+ L+ + + DIL
Sbjct: 67 YEIDFVSAEALTALMDFAYTATLT---VSTANVGDIL 100
Score = 54.9 bits (133), Expect = 2e-09
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F+ L G QN E+ + A L+ + Y+ L+ + + DIL +
Sbjct: 51 FKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLT---VSTANVGDILSAARLLE 107
Query: 208 FQDLENSISDYL 219
+ + +D L
Sbjct: 108 IPAVSHVCADLL 119
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 94.6 bits (235), Expect = 2e-21
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 19 VGMSPCTSTTGTTNHSYEIE-HVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAA 77
V + + N ++ L++ +G L+ N F+D L V ++ HK ILAA
Sbjct: 136 VSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAA 195
Query: 78 RSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKL 120
RS F A+ + ES +N +E++D FK ++ +IY+GK
Sbjct: 196 RSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 238
Score = 94.2 bits (234), Expect = 4e-21
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A+ + ES +N +E++D FK ++ +IY+GK D + D+L + KY
Sbjct: 200 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---PNLDKMADDLLAAADKYA 256
Query: 208 FQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIIS 260
+ L+ D L L+V NA I A + QL + FI+Y+A ++
Sbjct: 257 LERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 87.3 bits (217), Expect = 1e-20
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 29 GTTNHSYEI-EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLY 87
G+ + + H + + L D +D V++V E+ HK +L A S F ++
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 60
Query: 88 GGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
L + + N F LL ++Y+ +L+ L++ I+ ++
Sbjct: 61 DQLKRNLSVINLDPEINPEGFNILLDFMYTSRLN---LREGNIMAVM 104
Score = 51.1 bits (123), Expect = 6e-08
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F ++ L + + N F LL ++Y+ +L+ L++ I+ ++ +
Sbjct: 55 FYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLN---LREGNIMAVMATAMYLQ 111
Query: 208 FQDLENSISDYLR 220
+ + ++ +++
Sbjct: 112 MEHVVDTCRKFIK 124
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 85.4 bits (212), Expect = 1e-19
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 17 PSVGMSPCTSTTGTTNHSYEIE-HVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVIL 75
S G+ T + + H L + + F D L++ E+I V K IL
Sbjct: 7 HSSGVDLGTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNIL 66
Query: 76 AARSEYFRALL--YGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLS 121
AA S Y R L + + +IEL +++ + +L YI+SG++
Sbjct: 67 AAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIR 114
Score = 47.3 bits (113), Expect = 2e-06
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 148 FRALL--YGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHK 205
R L + + +IEL +++ + +L YI+SG++ L +D I D++ +
Sbjct: 73 IRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIR---LNEDTIQDVVQAADL 129
Query: 206 YGFQDLENSISDYL 219
DL+ ++L
Sbjct: 130 LLLTDLKTLCCEFL 143
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 80.0 bits (198), Expect = 7e-18
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 23 PCTSTTGTTNHSYEI-EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEY 81
P S + + +YE H + + + D D ++V+ ++ H+ +LAA S Y
Sbjct: 2 PHMSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSY 61
Query: 82 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
F + G ++ + + F+ L+++ Y+ KL L D + ++
Sbjct: 62 FHS-RIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLI---LSKDNVDEVC 110
Score = 46.1 bits (110), Expect = 4e-06
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F + G ++ + + F+ L+++ Y+ KL L D + ++
Sbjct: 62 FHSR-IVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLI---LSKDNVDEVCRCVEFLS 117
Query: 208 FQDLENSISDYLR 220
++E S +L+
Sbjct: 118 VHNIEESCFQFLK 130
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 78.8 bits (195), Expect = 1e-17
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 28 TGTTNHSYEI-EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALL 86
G+ + YE H + + + D D LIV+ ++ H+ +LAA SEYF L
Sbjct: 3 LGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQAL 62
Query: 87 YGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
G +++ + F LL++ Y+ KL L + I +++
Sbjct: 63 VGQT-KNDLVVSLPEEVTARGFGPLLQFAYTAKLL---LSRENIREVI 106
Score = 45.7 bits (109), Expect = 4e-06
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F L G +++ + F LL++ Y+ KL L + I +++ +
Sbjct: 58 FWQALVGQT-KNDLVVSLPEEVTARGFGPLLQFAYTAKLL---LSRENIREVIRCAEFLR 113
Query: 208 FQDLENSISDYL 219
+LE+S +L
Sbjct: 114 MHNLEDSCFSFL 125
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 78.8 bits (195), Expect = 1e-17
Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
H + + + D D + V+ ++ H+ +LAA S YF + + G + N
Sbjct: 11 VHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA-DGELNI 69
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
+ + F+ L+++ Y+ KL L + + ++
Sbjct: 70 TLPEEVTVKGFEPLIQFAYTAKLI---LSKENVDEVC 103
Score = 46.4 bits (111), Expect = 2e-06
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F + + G + N + + F+ L+++ Y+ KL L + + ++
Sbjct: 55 FHSRIVGQA-DGELNITLPEEVTVKGFEPLIQFAYTAKLI---LSKENVDEVCKCVEFLS 110
Query: 208 FQDLENSISDYLR 220
++E S +L+
Sbjct: 111 VHNIEESCFQFLK 123
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 77.6 bits (192), Expect = 2e-17
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
H + L E + D +++ + H+ +LA+ SEYF A+ N
Sbjct: 4 HHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVF 61
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
++ F+ LL++IY+G L NL + +I
Sbjct: 62 LDQSQVKADGFQKLLEFIYTGTL---NLDSWNVKEIH 95
Score = 44.9 bits (107), Expect = 6e-06
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F A+ N ++ F+ LL++IY+G L NL + +I +
Sbjct: 48 FGAIYRST--SENNVFLDQSQVKADGFQKLLEFIYTGTL---NLDSWNVKEIHQAADYLK 102
Query: 208 FQDLENSISDYLR 220
+++ +
Sbjct: 103 VEEVVTKCKIKME 115
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 76.5 bits (189), Expect = 6e-17
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 31 TNHSYEIEHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGL 90
HS + L E+ ++ D L V H +LA S +F++L
Sbjct: 5 VQHSVRV-----LQEL-NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSL----Y 54
Query: 91 CESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
+ + + L F LL + Y+G L L +L
Sbjct: 55 GDGSGGSVVLPAGFAEIFGLLLDFFYTGHL---ALTSGNRDQVL 95
Score = 44.1 bits (105), Expect = 1e-05
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F++L + + + L F LL + Y+G L L +L + +
Sbjct: 50 FQSLY----GDGSGGSVVLPAGFAEIFGLLLDFFYTGHL---ALTSGNRDQVLLAARELR 102
Query: 208 FQDLENSISDYL 219
+ +
Sbjct: 103 VPEAVELCQSFK 114
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 76.2 bits (188), Expect = 6e-17
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
++ L + + F D +IV++ K HK IL+A S YF L
Sbjct: 13 QYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF-----SVAGQV 67
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
+EL F +L YIYS K+ ++ D++ +++
Sbjct: 68 VELSFIRAEIFAEILNYIYSSKIV--RVRSDLLDELI 102
Score = 42.7 bits (101), Expect = 3e-05
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F L +EL F +L YIYS K+ ++ D++ +++ G
Sbjct: 57 FHQLF-----SVAGQVVELSFIRAEIFAEILNYIYSSKIV--RVRSDLLDELIKSGQLLG 109
Query: 208 FQDLEN 213
+ +
Sbjct: 110 VKFIAA 115
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 76.9 bits (190), Expect = 6e-17
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 27 TTGTTNHSYEIEHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALL 86
++G++ HS + L E+ ++ D L V H +LA S +F+ +
Sbjct: 2 SSGSSGHSVRV-----LQEL-NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRI- 54
Query: 87 YGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
+ + L F LL + Y+G L+ L +L
Sbjct: 55 ---YGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLA---LTSGNRDQVL 96
Score = 45.3 bits (108), Expect = 7e-06
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F+ + + + L F LL + Y+G L+ L +L + +
Sbjct: 51 FQRIY----GDGTGGSVVLPAGFAEIFGLLLDFFYTGHLA---LTSGNRDQVLLAAKELR 103
Query: 208 FQDLENSISDYLRVILTVHNACSI 231
+ + +
Sbjct: 104 VPEAVELCQSFQPQTSVGQAQSGL 127
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 76.5 bits (189), Expect = 7e-17
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
H L + L D V++V +++ H+ +LA S+ F L N
Sbjct: 10 SHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQH 64
Query: 98 IELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
L + F+ +L+Y Y+ L K + + D+L
Sbjct: 65 YTLDFLSPKTFQQILEYAYTATLQ---AKAEDLDDLL 98
Score = 44.9 bits (107), Expect = 8e-06
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F L N L + F+ +L+Y Y+ L K + + D+L +
Sbjct: 54 FEILF-----HRNSQHYTLDFLSPKTFQQILEYAYTATLQ---AKAEDLDDLLYAAEILE 105
Query: 208 FQDLENSISDYL 219
+ LE L
Sbjct: 106 IEYLEEQCLKML 117
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 74.2 bits (183), Expect = 4e-16
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 31 TNHSYEIEHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGL 90
HS + ++ L++ D +V HK +LAA SEYF+ L
Sbjct: 8 PQHSQHV--LEQLNQQ----RQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---- 57
Query: 91 CESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
++ + L +N +L+++Y+ KL +L + + D+L
Sbjct: 58 -VDQKDVVHLDISNAAGLGQVLEFMYTAKL---SLSPENVDDVL 97
Score = 40.3 bits (95), Expect = 3e-04
Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 22/85 (25%)
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
F+ L ++ + L +N +L+++Y+ KL +L + + D+L
Sbjct: 53 FKMLF-----VDQKDVVHLDISNAAGLGQVLEFMYTAKL---SLSPENVDDVL------- 97
Query: 208 FQDLENSISDYLRVILTVHNACSIF 232
+++ +L+ + + AC
Sbjct: 98 ------AVATFLQ-MQDIITACHAL 115
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 69.2 bits (170), Expect = 3e-14
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
+ E + L + D ++V+ H+ +LAA S YFR L S
Sbjct: 15 NFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDL----FNNSRSAV 70
Query: 98 IEL-HDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
+EL +F+ +L + Y+G+L ++ ++
Sbjct: 71 VELPAAVQPQSFQQILSFCYTGRL---SMNVGDQDLLM 105
Score = 36.1 bits (84), Expect = 0.009
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 148 FRALLYGGLCESNQNEIEL-HDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKY 206
FR L S +EL +F+ +L + Y+G+L ++ ++ +
Sbjct: 59 FRDLF----NNSRSAVVELPAAVQPQSFQQILSFCYTGRL---SMNVGDQDLLMYTAGFL 111
Query: 207 GFQDLENSISDYLRVILT 224
Q++ +++ + +
Sbjct: 112 QIQEIMEKGTEFFLKVSS 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.2 bits (187), Expect = 3e-14
Identities = 106/720 (14%), Positives = 205/720 (28%), Gaps = 302/720 (41%)
Query: 11 NSHSVLPSVGMSPCTSTTGTTNHSYEIEHVQFLSEMIGNLY-----LNDEFSDTV----- 60
+++S P T + G+ H + + L ++F+ +
Sbjct: 2 DAYST------RPLTLSHGSLEHVLLVPT---------ASFFIASQLQEQFNKILPEPTE 46
Query: 61 -LIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGK 119
+E + L + + G S + + + F +L +
Sbjct: 47 GFAADDEPTTP--AELVGK--------FLGYVSS-----LVEPSKVGQFDQVLNLCLT-- 89
Query: 120 LSFRN--LK-DDV------ILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEIELHDTN 170
F N L+ +D+ +L K L +N+ + + + ++
Sbjct: 90 -EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKSNS- 143
Query: 171 IVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISDY---LRVILTVHN 227
A L + + G ++ I G G Q + DY LR
Sbjct: 144 --A---LFRAVGEGNAQ--------LVAIFG-----G-Q---GNTDDYFEELR------- 174
Query: 228 ACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSFYAPEID 287
++ Y + +V I ++A+ L + + + + ++
Sbjct: 175 --DLYQ-TY-------HVLVGDLIKFSAET------LSELIR----TTLDAEKVFTQGLN 214
Query: 288 IFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELL------------ 335
I ++W++ +P D + PI+ PLI + +L
Sbjct: 215 I----LEWLE--NPSNTPDKDYLLSIPISC---------PLIGVIQLAHYVVTAKLLGFT 259
Query: 336 ----------TTVRSSGIISADKILDAIELQTNDKVQYRANSPEVEEDGESSFRAPINMD 385
T S G+++A AI A + ES F +
Sbjct: 260 PGELRSYLKGATGHSQGLVTA----VAI-----------AETD----SWESFFVSVRKAI 300
Query: 386 EILTY--VR----LPLISLDELLTTVRSS-----GI---------ISADKILDAIELQTN 425
+L + VR P SL + + S G+ ++ +++ D + +TN
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTN 357
Query: 426 DKVQYRGYLKPEENLATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTS 485
+L + + S L+NG N ++ S
Sbjct: 358 ------SHLPAGKQVEIS--------------LVNGAKN----------LVVSGPPQS-- 385
Query: 486 CDNGILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYT----RFYCRS 541
L L LR +DQ + I ++ +F S
Sbjct: 386 -----LYGLNLT--------------LRKAK--APSGLDQSR----IPFSERKLKF---S 417
Query: 542 WQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTV---QLSEEGII-------I 591
+FL P V FH S ++ A + L + + I
Sbjct: 418 NRFL--P---------------VASPFH--S-HLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 592 PKHNVAT----RELSAKVVEGVSRSLSSLIDGNTVKY-DWDS----GYTCHQL--GSGAI 640
P ++ R LS + E ++D W++ T H L G G
Sbjct: 458 PVYDTFDGSDLRVLSGSISE-------RIVDCIIRLPVKWETTTQFKAT-HILDFGPGGA 509
Score = 57.4 bits (138), Expect = 2e-08
Identities = 77/530 (14%), Positives = 153/530 (28%), Gaps = 190/530 (35%)
Query: 259 ISENSFYNLSQNGLIQLIQRDSFYAPEIDIFRAVVDWIKANSPEVEEDGESSFRAPINMD 318
+ SF+ SQ ++ F + + D E +
Sbjct: 22 VPTASFFIASQ-------LQEQFNK-----------ILPEPTEGFAADDEPT-------- 55
Query: 319 EILTYVRLPLISLDELLTTVRSSGIISADKILDAIELQTNDKVQYRANSPEVEEDGESSF 378
+ EL+ K L + S VE F
Sbjct: 56 -----------TPAELVG-----------KFLGYV-------------SSLVEPSKVGQF 80
Query: 379 RAPINMDEILTYVRLPLISLDELLTTV-RSSGIISADKILDAIELQTNDKVQY--RGYL- 434
D++L + L E + I + L T K + + Y+
Sbjct: 81 ------DQVL------NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 435 ------KPEENLATSKMGTMVMQGEMKNALL---NGDVNNY--DMENGYTRHTITEATSS 483
+P + + S + V +G + + G+ ++Y ++ + Y T
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-------TYH 181
Query: 484 TSCDNGILIKLGTQAIVNHIKLL--LWDKDLRSYSYFIEVSIDQKKW------TRVIDYT 535
L+ I + L L L + F + ++ +W T DY
Sbjct: 182 V------LVG---DLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYL 231
Query: 536 RFYCRSWQFLYFPTQVVQYI---RVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIP 592
S + Q+ Y+ +++G T ++ + T +G++
Sbjct: 232 LSIPISCPLIGV-IQLAHYVVTAKLLGF--TPGELRSYLK------GATGHS--QGLV-- 278
Query: 593 KHNVATRELSAKVVEGVSRSLSSLIDGNTVKYD----WDSGYTCHQ----LGSGAILVQ- 643
+A + + S S + K + G C++ +++
Sbjct: 279 ---------TAVAIA-ETDSWESFFV-SVRKAITVLFF-IGVRCYEAYPNTSLPPSILED 326
Query: 644 -----LGQP-YML---DSMRLLLWDCDDRSYSYL-----VDVS-INLWDWEIVADHTRDL 688
G P ML + + + D +++ S+L V++S +N +V+ + L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 689 C------RSW-------QS-ISFSRRPVV----FVRIIGTHNTMNEVFHC 720
R QS I FS R + F+ + FH
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-------ASPFHS 429
Score = 38.1 bits (88), Expect = 0.014
Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 72/229 (31%)
Query: 99 ELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQN-----------KGTTLTQN 147
+L+ T+ A + + F++ ILDI+ N KG + +N
Sbjct: 1634 DLYKTSKAA-QDVWN---RADNHFKDTYGFSILDIV--INNPVNLTIHFGGEKGKRIREN 1687
Query: 148 FRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSG---KLS----------------F 188
+ A+++ + + ++ + Y + LS F
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKE---INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 189 RNLKDDVILDI--------LG----LSHKYGFQDLENSISDYLRVI----LTVHNACSIF 232
+LK ++ LG L+ + SI + V+ +T+ A
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADV--M--SIESLVEVVFYRGMTMQVAVPRD 1800
Query: 233 DCAY-YYDLKQLN--KIVLSF----IDYNAKQIISENSF------YNLS 268
+ Y + +N ++ SF + Y +++ + YN+
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module,
sugar-binding protein, pectin, plant cell WALL,
galacturonic acid; 1.35A {Yersinia enterocolitica} PDB:
2jd9_A
Length = 145
Score = 67.1 bits (164), Expect = 2e-13
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 490 ILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVID--YTRFYCRSWQFLYF 547
+ ++L + + +I ++ + R + I S D K W + + T ++ + L F
Sbjct: 46 VQLELDKEQSIENILIVPFKPTERKLKFSIFYSNDGKNWQPLAEGLETSSADKNGEKLTF 105
Query: 548 PTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTV 582
+YI++ VN I I +A +
Sbjct: 106 TPVTAKYIKLDTFGTDVNNWSAINEIAI-NSAAAL 139
Score = 54.0 bits (130), Expect = 8e-09
Identities = 12/104 (11%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSI 673
+++ DG+ W + G + ++L + ++++ ++ + +R + + S
Sbjct: 27 ANIADGDVKTR-WAAS------GESWVQLELDKEQSIENILIVPFKPTERKLKFSIFYSN 79
Query: 674 NLWDWEIVADH--TRDLCRSWQSISFSRRPVVFVRIIGTHNTMN 715
+ +W+ +A+ T ++ + ++F+ ++++ +N
Sbjct: 80 DGKNWQPLAEGLETSSADKNGEKLTFTPVTAKYIKLDTFGTDVN 123
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 66.1 bits (162), Expect = 2e-13
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 39 HVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEI 98
L ++ L DT++ V +++ H ++LA S+
Sbjct: 15 GSDRLVQL--AARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRR---------GQWA 63
Query: 99 ELHDTNIVAFKCLLKYIYSGKLS 121
+ F LL ++Y +
Sbjct: 64 LGEGISPSTFAQLLNFVYGESVE 86
Score = 38.4 bits (90), Expect = 0.001
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 158 ESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSISD 217
+ F LL ++Y + L+ + + + G Q LE +
Sbjct: 57 GRRGQWALGEGISPSTFAQLLNFVYGESVE---LQPGELRPLQEAARALGVQSLEEACWR 113
Query: 218 YLR 220
Sbjct: 114 ARG 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 2e-09
Identities = 81/544 (14%), Positives = 172/544 (31%), Gaps = 146/544 (26%)
Query: 204 HKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENS 263
H+Y ++D+ +S + + FDC D++ + K +LS + II
Sbjct: 14 HQYQYKDI---LSVFEDAFV------DNFDC---KDVQDMPKSILSKEEI--DHIIMSKD 59
Query: 264 --------FYNLSQNGLIQLIQRDSFYAPEIDIFRAVVDWIKA------NSPEVEEDGES 309
F+ L +++Q+ F ++ R ++ + P +
Sbjct: 60 AVSGTLRLFWTLLSKQE-EMVQK--FVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 310 SFRAPI-NMDEILT--YV-RL-PLISLDELLTTVRSSGIIS-------------ADKILD 351
R + N +++ V RL P + L + L +R + + D L
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 352 -AIELQTNDKVQY----RANSPEV----------------EEDGESSFRAPINMDEILTY 390
++ + + K+ + NSPE + S + + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 391 VR-------LP--LISLDELLTTVRSSGIISA-D---KILDAIELQTNDK-------VQY 430
+R L+ L V+++ +A + KIL L T K
Sbjct: 234 LRRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAAT 285
Query: 431 RGYLKPEENLATSKMGTMVMQGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGI 490
++ + + T + E+K+ LL Y + N
Sbjct: 286 TTHISLDHHSMT------LTPDEVKSLLLK-----------YLDCRPQDLPREVLTTNPR 328
Query: 491 LIKLGTQAIVNHIKLLLWDKDLRSYSY-----FIEVSIDQKKWTRVIDYTRFYCRSWQFL 545
+ + ++I + + WD + + IE S++ + +Y + + +
Sbjct: 329 RLSIIAESIRDGLAT--WDN-WKHVNCDKLTTIIESSLNVLEPA---EYRKMF---DRLS 379
Query: 546 YFPTQV---VQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEEGIIIP-------KHN 595
FP + ++ + + V +V+ Y+ Q E I IP
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 596 VATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRL 655
L +V+ ++ D + + + Y +G L + P + R+
Sbjct: 440 ENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRM 495
Query: 656 LLWD 659
+ D
Sbjct: 496 VFLD 499
Score = 53.7 bits (128), Expect = 2e-07
Identities = 49/367 (13%), Positives = 100/367 (27%), Gaps = 123/367 (33%)
Query: 462 DVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLW---DKDLRSYSYF 518
+ + D+++ + ++ D+ +I V+ L W K F
Sbjct: 32 NFDCKDVQD-MPKSILS----KEEIDH--IIMSKDA--VSGTLRLFWTLLSKQEEMVQKF 82
Query: 519 IEVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYT 578
+E + +Y +FL P + Q + T MY
Sbjct: 83 VEEVLRI-------NY--------KFLMSPIKTEQRQPSMMT--------------RMYI 113
Query: 579 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLID------------GNTV---- 622
Q +L + + K+NV +R + + ++L L G T
Sbjct: 114 EQRDRLYNDNQVFAKYNV-SRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 623 ---------KYD----W-DSGYT-------------CHQL-GSGAILVQLGQPYML---- 650
K D W + +Q+ + L
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 651 --DSMRLLLWDCDDRSY--SYLV--DVSINLWDWEIVA--DH-------TRD--LCRSWQ 693
+R LL + Y LV +V + + + TR +
Sbjct: 230 IQAELRRLL---KSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 694 SISFSRRPVVFVRIIGTHNTMNEVF-HCVHFECPDQSIKLPS-AGQPSPSCLSVVTAQFQ 751
+ + + + + T + + + + D LP +P LS++ +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPRRLSIIAESIR 338
Query: 752 PAETTLE 758
T +
Sbjct: 339 DGLATWD 345
Score = 46.4 bits (109), Expect = 3e-05
Identities = 65/499 (13%), Positives = 126/499 (25%), Gaps = 161/499 (32%)
Query: 65 NEKISVH------KVILAA---RSEYFRALLYG-------GLCESNQNEIE----LHDTN 104
+ + + K +A S + + C S + +E L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 105 IVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALLYGGLCESNQNEI 164
+ + + KL +++ + +L K + LL +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYE--------NCLL-----------V 249
Query: 165 --ELHDTNIV-AF--KCLLKYIYSGKLSFRNL---KDDVILDILGLSHKY---------G 207
+ + AF C + L + + D L +
Sbjct: 250 LLNVQNAKAWNAFNLSC------------KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 208 FQD----------LENSISDYLRVILTVH-NACSIF-----------DCAYYYDLKQLNK 245
L+ D R +LT + SI D + + +L
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 246 IVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSFYAPEIDIFRAVVD---------WI 296
I+ S ++ L R F + +F W
Sbjct: 358 IIESSLN-------------VLEPA-----EYRKMFD--RLSVFPPSAHIPTILLSLIWF 397
Query: 297 KANSPEVEEDGESSFRAP-INMDEILTYVRLPLISLDELLTTVRSSGIISADKILDAIEL 355
+V + + + + +P I L+ + + I+D
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDH--Y 453
Query: 356 QTNDKVQYRANSPEVEEDGES-SFRA----PINMDEILTYVRLPLISLDELLTTVRSSGI 410
P D S I E +T R+ + L +R
Sbjct: 454 NIPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 411 --ISADKILDAIELQTNDKVQYRGYL-------------------KPEENLATSKMGTMV 449
++ IL+ + Y+ Y+ K EENL SK T +
Sbjct: 513 AWNASGSILNTL----QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDL 567
Query: 450 MQGEMKNALLNGDVNNYDM 468
++ AL+ D ++
Sbjct: 568 LR----IALMAEDEAIFEE 582
Score = 46.0 bits (108), Expect = 5e-05
Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 47/231 (20%)
Query: 38 EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAAR----SEYFRALLYGGLCES 93
+ ++ ++ + SD +++V +HK L + S +Y L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 94 NQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILG---------KKQNKGTTL 144
+NE LH + + + + + D +G ++ +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 145 TQNFRALLYGGLCESNQNEIELHDTNIVAFKCLL----------KYIYSGKLSFRNLKDD 194
+FR L + +I T A +L YI + L +
Sbjct: 497 FLDFRFL---------EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 195 VILDILGLSHKYGFQDLENSISDYLRVILTVHNACSIFDCAYYYDLKQLNK 245
ILD L K + + +D LR+ L + +IF+ A+ KQ+ +
Sbjct: 548 -ILDFL---PKIEENLICSKYTDLLRIALMAEDE-AIFEEAH----KQVQR 589
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 32 carbohydrate-binding module; HET:
MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Length = 161
Score = 53.4 bits (128), Expect = 2e-08
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 490 ILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQFLYFPT 549
I L V+ ++L ++K+ + + +EV + V+D T + + P
Sbjct: 69 ATIDLEGNNFVDFLELH-FEKEGFRFQFKVEVEDESGNRETVLDMTSNTEDNKKSYNIPV 127
Query: 550 QV-VQYIRVVGTNNTVN 565
+ + I T
Sbjct: 128 KKEISKIHATITGKAPG 144
Score = 37.2 bits (86), Expect = 0.007
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 614 SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSI 673
S++ DG+ W S + L +D + L ++ + + + V+V
Sbjct: 47 SNITDGDLSSL-WISDNGAM---PANATIDLEGNNFVDFLELH-FEKEGFRFQFKVEVED 101
Query: 674 NLWDWEIVADHTRDLCRSWQSISFS-RRPVVFVRIIGTHNTMN 715
+ E V D T + + +S + ++ + + T
Sbjct: 102 ESGNRETVLDMTSNTEDNKKSYNIPVKKEISKIHATITGKAPG 144
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2
hydrolase, family 89 glycoside hydrolase, mucin
carbohydrate-active enzyme; HET: NDG GAL; 1.90A
{Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A*
2vca_A
Length = 914
Score = 54.3 bits (130), Expect = 1e-07
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 490 ILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYT--RFYCRSWQFLYF 547
I + LG ++ I++ D+ Y Y I S D + + ++ +
Sbjct: 65 IEVDLGGIYELSKIEIFNKDE--AVYKYNIYASEDGENFNKIAYKNNDNVSDSNGNMHTI 122
Query: 548 PTQVVQYIRVVGTNNTVNKVFHIVSFEI 575
IR+ N+ + +I +
Sbjct: 123 DNVRAGKIRIDVVQNSNSDRVNIAEINV 150
Score = 42.0 bits (98), Expect = 8e-04
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 614 SSLIDGNTVKYDWDSGYTCHQLGSGA-ILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVS 672
IDG+ Y W+S I V LG Y L + + D + Y Y + S
Sbjct: 45 DLAIDGDLSTY-WESS------NDYKWIEVDLGGIYELSKIEIFNKD--EAVYKYNIYAS 95
Query: 673 INLWDWEIVADHT--RDLCRSWQSISFSRRPVVFVRIIGTHNTMN 715
+ ++ +A + + +RI N+ +
Sbjct: 96 EDGENFNKIAYKNNDNVSDSNGNMHTIDNVRAGKIRIDVVQNSNS 140
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 89 glycoside hydrolase, family 32
carbohyd binding module; HET: GAL; 1.55A {Clostridium
perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Length = 161
Score = 50.3 bits (120), Expect = 2e-07
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 3/131 (2%)
Query: 585 SEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQL 644
S +P+ N+ S G IDG W + Y + +I ++L
Sbjct: 19 SHMASALPQGNMKATATSEHPDVGNEGLAKFAIDGKENTI-WHTKYNPVEELPQSITLEL 77
Query: 645 GQPYMLDSMRLL--LWDCDDRSYSYLVDVSINLWDWEIVADHTRDLCRSWQSISFSRRPV 702
G Y ++ L + Y + VS + ++ +++ D S +++ F+
Sbjct: 78 GGSYEINKFTYLPRSGAKNGNITKYELHVSEDGNNFRKISEGNWDDSGSLKTLKFNSTKA 137
Query: 703 VFVRIIGTHNT 713
V+++
Sbjct: 138 THVKLVALEGV 148
Score = 45.3 bits (107), Expect = 1e-05
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 490 ILIKLGTQAIVNHIKLL--LWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQFLYF 547
I ++LG +N L K+ Y + VS D + ++ + S + L F
Sbjct: 73 ITLELGGSYEINKFTYLPRSGAKNGNITKYELHVSEDGNNFRKISEGNWDDSGSLKTLKF 132
Query: 548 PTQVVQYIRVVGTNNT 563
+ ++++V
Sbjct: 133 NSTKATHVKLVALEGV 148
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 89 glycoside hydrolase, family 32
carbohyd binding module; HET: MSE; 1.55A {Clostridium
perfringens}
Length = 149
Score = 48.6 bits (116), Expect = 7e-07
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 490 ILIKLGTQAIVNHIKLLLWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFY--CRSWQFLYF 547
+ L + ++ I ++ + Y IE+S D +WT+++D + +
Sbjct: 65 VTFDLSKEKDISAIDIV-SKGN-SPLKYSIEISNDGTEWTKIVDENNNEENKAVYSNILK 122
Query: 548 PTQVVQYIRVVGTNNTV 564
++ +++R + V
Sbjct: 123 SGKIGRFVRFNFNSENV 139
Score = 37.5 bits (87), Expect = 0.005
Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 9/136 (6%)
Query: 577 YTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLG 636
+ + L G + N+A ++ + V + ++L DGN W G +
Sbjct: 7 HHHHSSGLVPRGSHMASENLAMKDETKVEVTSNNSEANNLRDGNENTL-WVPGQEEEK-- 63
Query: 637 SGAILVQLGQPYMLDSMRLLLWDCDDRSYSYLVDVSINLWDWEIVADHTRDLCRSWQSIS 696
++ L + + ++ ++ + Y +++S + +W + D + +
Sbjct: 64 --SVTFDLSKEKDISAIDIVSKG--NSPLKYSIEISNDGTEWTKIVDENNNEENKAVYSN 119
Query: 697 FSRRPVV--FVRIIGT 710
+ + FVR
Sbjct: 120 ILKSGKIGRFVRFNFN 135
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 46.5 bits (111), Expect = 1e-06
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 223 LTVHNACSIFDCAYYYDLKQLNKIVLSFIDYNAKQIISENSFYNLSQNGLIQLIQRDSFY 282
+ V N + A + +L + Q+ + F +L L +I
Sbjct: 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG--V 65
Query: 283 APEIDIFRAVVDWIKANSPEVEEDGESSFRAPINMDEILTYVRL 326
+ A+ WI N E R + + T ++
Sbjct: 66 PCSQNPTEAIEAWINFNKEE---------REAF-AESLRTSLKE 99
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside
hydrolase, GH84C, hydrolase; HET: GAL; 1.49A
{Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Length = 150
Score = 46.8 bits (111), Expect = 3e-06
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 602 SAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGA-ILVQLGQPYMLDSMRLL--LW 658
S++ G + S DG+ + W S ++ + ++L Y ++ ++
Sbjct: 17 SSEETSGENAPASFASDGDMNTF-WHSKWSSPAHEGPHHLTLELDNVYEINKVKYAPRQD 75
Query: 659 DCDDRSYSYLVDVSINLWDWEIVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNT 713
+ R Y V VS++ ++ V T + + + I F +VR+ T +
Sbjct: 76 SKNGRITGYKVSVSLDGENFTEVKTGTLEDNAAIKFIEFDSVDAKYVRLDVTDSV 130
Score = 44.9 bits (106), Expect = 1e-05
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 490 ILIKLGTQAIVNHIKLL--LWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQFLYF 547
+ ++L +N +K K+ R Y + VS+D + +T V T + +F+ F
Sbjct: 55 LTLELDNVYEINKVKYAPRQDSKNGRITGYKVSVSLDGENFTEVKTGTLEDNAAIKFIEF 114
Query: 548 PTQVVQYIRVVGTNNT 563
+ +Y+R+ T++
Sbjct: 115 DSVDAKYVRLDVTDSV 130
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is
predominantly composed of B strands., structural
genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB:
2kd7_A
Length = 159
Score = 46.4 bits (110), Expect = 4e-06
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 490 ILIKLGTQAIVNHIKLL--LWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQFLYF 547
I+I + + + I+LL + E S D W + + + Y
Sbjct: 57 IIIDMNHRVKIAQIELLPRGRGSNNPIKVVRFEASEDGTNWESIGQFGFTNQDAALKYYV 116
Query: 548 PTQVVQYIRVVGTNNTVNKVF-HIVSFEIMYTAQTVQ 583
+ +YI++V + N I ++ T ++
Sbjct: 117 KSSTARYIKLVIPDGVGNGTVAAIRELDVRGTVVNLE 153
Score = 41.4 bits (97), Expect = 2e-04
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 614 SSLIDGNTVKYDWDSGYTCHQLGSGA-ILVQLGQPYMLDSMRLL--LWDCDDRSYSYLVD 670
LIDGN + W S + I++ + + + LL ++ +
Sbjct: 31 KHLIDGNIETF-WHSRWQGGSDPLPYEIIIDMNHRVKIAQIELLPRGRGSNNPIKVVRFE 89
Query: 671 VSINLWDWEIVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNTMNEVF 718
S + +WE + + +++++ N
Sbjct: 90 ASEDGTNWESIGQFGFTNQDAALKYYVKSSTARYIKLVIPDGVGNGTV 137
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A,
Q8A9F0_bactn, BT_0865, PSI-2, protein structure
initiative; 3.00A {Bacteroides thetaiotaomicron}
Length = 169
Score = 45.7 bits (108), Expect = 1e-05
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 490 ILIKLGTQAIVNHIKLL--LWDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQFLYF 547
I+I + + ++LL + S D WT + + + Y
Sbjct: 67 IVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEYYV 126
Query: 548 PTQVVQYIRVVGTNNTVNKVF 568
+ +YIR+ ++ N
Sbjct: 127 KSIKARYIRLTIPDDGGNSTV 147
Score = 44.5 bits (105), Expect = 3e-05
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 9/143 (6%)
Query: 577 YTAQTVQLSEEGIIIPKHNVATRELSAKVV---EGVSRSLSSLIDGNTVKYDWDSGYTCH 633
YT + +EG I K + + + LIDG+T + W + +
Sbjct: 3 YTGFCII--KEGTKISKSGWEVLSFTTQEASGEGAGNGLAKCLIDGDTETF-WHAKWQGG 59
Query: 634 QLGSGA-ILVQLGQPYMLDSMRLL--LWDCDDRSYSYLVDVSINLWDWEIVADHTRDLCR 690
I++ + Q + + LL ++ S + +W +
Sbjct: 60 SDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQD 119
Query: 691 SWQSISFSRRPVVFVRIIGTHNT 713
+ ++R+ +
Sbjct: 120 AALEYYVKSIKARYIRLTIPDDG 142
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase,
hydrolase; 2.00A {Bifidobacterium longum}
Length = 1376
Score = 45.0 bits (105), Expect = 1e-04
Identities = 23/228 (10%), Positives = 57/228 (25%), Gaps = 15/228 (6%)
Query: 346 ADKILDAIELQTNDKVQYRANSPEVEEDGESSFRAPINMDEILTYVRLPLISLDELLTTV 405
+A + + +Y + E+ + ++ + +L +
Sbjct: 1135 TRTKAEAQDKVKEIRGKYDSKRAELSDAAWQQYQDTLVKARVLINKNGATAEDFTKAYDI 1194
Query: 406 RSSGIISADKILDAIELQTNDKVQYRGYLKPEENLATSKMGTMVMQGEMKNA--LLNGDV 463
+ D +AT A +G+
Sbjct: 1195 LVALDEYMKTAPGNESSDKYDVAADGSDELGGYTVATGSEEPTAGLPSEGPADLAQDGND 1254
Query: 464 NNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLL----LWDKDLRSYSYFI 519
+ + HT + + L +N ++ L + + + Y I
Sbjct: 1255 STH-------WHTSWSENAVGNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKI 1307
Query: 520 EVSIDQKKWTRVIDYTRFY-CRSWQFLYFPTQV-VQYIRVVGTNNTVN 565
+++ V+ F WQ F V +R+ ++
Sbjct: 1308 TLTLADGTTKDVVTDAEFSTTTMWQKASFDAVENVTAVRLTVLSSAGQ 1355
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate
binding module, toxin, secreted, virulence, hydrolase,
glycosidase; HET: MSE BTB; 1.45A {Clostridium
perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Length = 192
Score = 42.7 bits (100), Expect = 1e-04
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 451 QGEMKNALLNGDVNNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDK 510
+G N L +GD N T ++ I + LG + ++ I+ ++
Sbjct: 37 EGNEANLL-DGDDNTG-------VWYKTLNGDTSLAGEFIGLDLGKEIKLDGIRFVIGKN 88
Query: 511 DLRS----YSYFIEVSIDQKKWTRVIDYTR---FYCRSWQFLYFPTQV-VQYIRVVGTNN 562
S + +E S+D + WT + +Y + + F T + +YIR+ N
Sbjct: 89 GGGSSDKWNKFKLEYSLDNESWTTIKEYDKTGAPAGKDVIEESFETPISAKYIRLTNMEN 148
Query: 563 TVNKVFHIVSFEI 575
+NK F I
Sbjct: 149 -INKWLTFSEFAI 160
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 43.9 bits (102), Expect = 2e-04
Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 6/192 (3%)
Query: 528 WTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKVFHIVSFEIMYTAQTVQLSEE 587
+ + I N ++ I Q +
Sbjct: 532 AQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLNTALSSFAVISEKVAQSFIQEALSFDL 591
Query: 588 GIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGA-ILVQLGQ 646
+I P+ T G + S DG+ + W S ++ + ++L
Sbjct: 592 TLINPRTVKITASSEET--SGENAPASFASDGDMNTF-WHSKWSSPAHEGPHHLTLELDN 648
Query: 647 PYMLDSMRLL-LWDC-DDRSYSYLVDVSINLWDWEIVADHTRDLCRSWQSISFSRRPVVF 704
Y ++ ++ D + R Y V VS++ ++ V T + + + I F +
Sbjct: 649 VYEINKVKYAPRQDSKNGRITGYKVSVSLDGENFTEVKTGTLEDNAAIKFIEFDSVDAKY 708
Query: 705 VRIIGTHNTMNE 716
VR+ T + ++
Sbjct: 709 VRLDVTDSVSDQ 720
Score = 41.2 bits (95), Expect = 0.001
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 464 NNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLL---WDKDLRSYSYFIE 520
D + H+ + + + + ++L +N +K R Y +
Sbjct: 617 FASDGDMNTFWHSKWSSPAHEG-PHHLTLELDNVYEINKVKYAPRQDSKNG-RITGYKVS 674
Query: 521 VSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNT 563
VS+D + +T V T + +F+ F + +Y+R+ T++
Sbjct: 675 VSLDGENFTEVKTGTLEDNAAIKFIEFDSVDAKYVRLDVTDSV 717
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta-
propeller; HET: LBT CIT; 1.70A {Micromonospora
viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB:
1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A
1eus_A*
Length = 601
Score = 41.3 bits (95), Expect = 0.001
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 460 NGDVNNYDMENGYTR-HTITEATSSTSCDNGILIKLGTQAIVNHIKLLLWDKDLRS---Y 515
+G +N N T HT + + I + LG ++ ++ ++ +
Sbjct: 477 DGRASNVIDGNPSTFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYT-RRQNSANEQVA 535
Query: 516 SYFIEVSIDQKKWTRVIDYTRF-YCRSWQFLYFPTQVVQYIRVVGTNNTVNKVF 568
Y I S++ W + RF + Q FP + +YIR+V + +
Sbjct: 536 DYEIYTSLNGTTWDGPVASGRFTTSLAPQRAVFPARDARYIRLVALSEQTGHKY 589
Score = 33.2 bits (74), Expect = 0.37
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 626 WDSGYTCHQLGSGA--ILVQLGQPYMLDSMRLL--LWDCDDRSYSYLVDVSINLWDW-EI 680
W + ++ I + LG + + ++ +++ Y + S+N W
Sbjct: 492 WHTEWSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSANEQVADYEIYTSLNGTTWDGP 551
Query: 681 VADHTRDLCRSWQSISFSRRPVVFVRIIGT 710
VA + Q F R ++R++
Sbjct: 552 VASGRFTTSLAPQRAVFPARDARYIRLVAL 581
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen,
carbohydrate-binding module, sugar-binding protein; HET:
GAL; 2.25A {Clostridium perfringens}
Length = 143
Score = 38.7 bits (90), Expect = 0.002
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 490 ILIKLGTQAIVNHIKLLLWDKDL---RSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQFLY 546
+ + LG V+ I + Y I + + V + T + +
Sbjct: 55 LSVNLGKARKVSSIAIT-PRTSGNNGFITKYEIHAINNGVETL-VAEGTWEENNLVKTVT 112
Query: 547 FPTQV-VQYIRVVGTNNT 563
F + + + I++
Sbjct: 113 FDSPIDAEEIKITAIQGV 130
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 39.8 bits (94), Expect = 0.003
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 16/84 (19%)
Query: 138 QNKGTTLTQNFRA-------------LLYGGLCESNQNEI-ELHDTNIVAFKCLLKYIYS 183
TT F LYGG N EI ++HD V FK ++ S
Sbjct: 96 TFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGFKSMM--AAS 153
Query: 184 GKLSFRNLKDDVILDILGLSHKYG 207
F + D + +I G
Sbjct: 154 VPGMFDAVSDGELFEIFQEIAACG 177
Score = 37.2 bits (87), Expect = 0.018
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 86 LYGGLCESNQNEI-ELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKGTTL 144
LYGG N EI ++HD V FK ++ S F + D + +I + G+ +
Sbjct: 123 LYGGGVPGNLPEIRKMHDAGAVGFKSMM--AASVPGMFDAVSDGELFEIFQEIAACGSVI 180
Query: 145 T 145
Sbjct: 181 V 181
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG, BTR319D.BT_411;
3.00A {Bacteroides thetaiotaomicron}
Length = 172
Score = 38.0 bits (88), Expect = 0.004
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 490 ILIKLGTQAIVNHIKLLL------WDKDLRSYSYFIEVSIDQKKWTRVIDYTRFYCRSWQ 543
+ +G + + S + ++E SID + W ++ D+T
Sbjct: 67 FVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASIDNENWVKLKDWTSPKIGEPN 126
Query: 544 FLYFPTQV-VQYIRVVGTNNTVN 565
+YIR V T+
Sbjct: 127 VNMDVPATQARYIRFVITDTYPT 149
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 39.1 bits (92), Expect = 0.005
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 152 LYGGLCESNQNEI-ELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYG 207
+GGL N + + +LHD ++ FK + G F+ D+ +L + G
Sbjct: 128 FWGGLVPGNIDHLQDLHDGGVIGFKAFM--SECGTDDFQFSHDETLLKGMKKIAALG 182
Score = 39.1 bits (92), Expect = 0.005
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 86 LYGGLCESNQNEI-ELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGKKQNKGTTL 144
+GGL N + + +LHD ++ FK + G F+ D+ +L + K G+ L
Sbjct: 128 FWGGLVPGNIDHLQDLHDGGVIGFKAFM--SECGTDDFQFSHDETLLKGMKKIAALGSIL 185
Query: 145 T 145
Sbjct: 186 A 186
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 33.7 bits (76), Expect = 0.26
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 15/169 (8%)
Query: 403 TTVRSSGIISADKILDAI--ELQTNDKVQYRGYLKPEENLATSKMGTMVMQGEMKNALLN 460
G+ +A +++ + + + T M ++
Sbjct: 547 QNPYQPGVKTATRVIKPLIDRTFATVVKFFNQKFNAHLDATTDYMPHKMISNV------- 599
Query: 461 GDVNNYDMENGYTRHTITEATSSTSCDNG--ILIKLGTQAIVNHIKLLLWDKDLRSYSYF 518
+ N ++ R I+ A G + I+L +I++ ++
Sbjct: 600 EQIKNLPLQVKANRVLISPANEVVKWAAGNSVEIELDAIYPGENIQINFGKDAPCTW-GR 658
Query: 519 IEVSIDQKKWTRVIDYTRFYCRSWQFLYFPTQVVQYIRVVGTNNTVNKV 567
+E+S D K+W S V+++R ++ +V
Sbjct: 659 LEISTDAKEWK---TVDLKQKESRLSAGLQKAPVKFVRFTNVSDEEQQV 704
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 32.6 bits (75), Expect = 0.52
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 152 LYGGLCESNQNEI-ELHDTNIVAFKCLLKYIYSGKLS--FRNLKDDVILDILGLSHKYG 207
GGL N + + EL + +V FKC + + FR++ D + G
Sbjct: 142 QLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELG 200
Score = 32.2 bits (74), Expect = 0.64
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 86 LYGGLCESNQNEI-ELHDTNIVAFKCLLKYIYSGKLS--FRNLKDDVILDILGKKQNKGT 142
GGL N + + EL + +V FKC + + FR++ D K G
Sbjct: 142 QLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQ 201
Query: 143 TLT 145
+
Sbjct: 202 PVL 204
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 31.0 bits (71), Expect = 1.2
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 5/28 (17%)
Query: 128 DVILDILGKKQNKGTTLTQNFRALLYGG 155
D++LD L G + L G
Sbjct: 210 DIVLDCLC-----GDNTGKGLSLLKPLG 232
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein,
protein structure initiative, PSI-2; 2.50A {Bacillus
subtilis}
Length = 153
Score = 30.2 bits (68), Expect = 1.3
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 329 ISLDELLTTVRSSGIISADKILDAIELQTNDKV---QYRANSPEVEED-----GESSFRA 380
I +++L + +R +G S ++ AI ++TN V +D S
Sbjct: 35 IDINQLQSMLRQAGSFSIQEVEYAI-METNGMVSVLPKSDFDKPTNKDMQIPSKSVSLPI 93
Query: 381 PINMDEILTYVRLPLISLDE--LLTTVRSSGIISADKILDAIELQTNDKV 428
+ +D + L +DE L ++ I + +L A E N +
Sbjct: 94 TLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFA-EWHKNKPL 142
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 30.6 bits (70), Expect = 1.9
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 128 DVILDILGKKQNKGTTLTQNFRALLYGG 155
D ++D G +A GG
Sbjct: 237 DKVVDHTG-----ALYFEGVIKATANGG 259
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 30.3 bits (69), Expect = 2.4
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 128 DVILDILGKKQNKGTTLTQNFRALLYGG 155
D IL+I G G L Q+ +A+ G
Sbjct: 259 DHILEIAG-----GAGLGQSLKAVAPDG 281
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.1 bits (66), Expect = 5.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 128 DVILDILGKKQNKGTTLTQNFRALLYGG 155
D+I+++L L+++ L +GG
Sbjct: 241 DIIIEMLA-----NVNLSKDLSLLSHGG 263
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase,
lipoprotein, PSI-2, protein initiative; 1.90A
{Bacteroides thetaiotaomicron}
Length = 469
Score = 29.2 bits (65), Expect = 5.9
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 490 ILIKLGTQAIVNHIKLLLW-DKDLRSYSYFIEVSIDQKKWTRVIDYTRF----YCRSWQF 544
I+ L + + + + R+ + +E ++D K W + + T +
Sbjct: 368 IIFTLPKTIEFDCLMIEEVIELGHRTTKWSVEYTVDGKNWITIPEATDKQAIGHKW---I 424
Query: 545 LYFPTQVVQYIRVV 558
+ + +R+
Sbjct: 425 VRLAPVKAKQVRLR 438
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 28.7 bits (65), Expect = 7.1
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 128 DVILDILGKKQNKGTTLTQNFRALLYGG 155
++ILD +G G+ +N L G
Sbjct: 233 NLILDCIG-----GSYWEKNVNCLALDG 255
>2y24_A Xylanase; hydrolase, GH5 family, aldotetraouronic acid; HET: XYP
GCV PG4 PGE; 1.39A {Erwinia chrysanthemi} PDB: 1nof_A*
Length = 383
Score = 28.7 bits (63), Expect = 7.8
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 680 IVADHTRDLCRSWQSISFSRRPVVFVRIIGTHNTMNEVFHCVHFECPD 727
IVA+ + +V IIG H +
Sbjct: 169 IVAESLGFNPALTDPVLKDSDASKYVSIIGGHLYGTTPKPYPLAQNAG 216
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex
aeolicus} PDB: 2egi_A 2egr_A
Length = 128
Score = 27.5 bits (62), Expect = 7.8
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 12/54 (22%)
Query: 77 ARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVI 130
AR E+ R+ G +++ +V +Y DDV
Sbjct: 32 ARGEFLRSK---GF---PYSKMRDMGLEVVLLNAYCEYKKPLFY------DDVF 73
>1s5u_A Protein YBGC; structural genomics, hypothetical protein,
thioesterase fold, PSI, protein structure initiative;
1.70A {Escherichia coli} SCOP: d.38.1.1
Length = 138
Score = 27.5 bits (62), Expect = 9.5
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 12/54 (22%)
Query: 77 ARSEYFRALLYGGLCESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVI 130
AR+E R +Q + V K ++Y +L DD++
Sbjct: 37 ARTEMLRHH---HF---SQQALMAERVAFVVRKMTVEYYAPARL------DDML 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,539,356
Number of extensions: 701294
Number of successful extensions: 1414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1360
Number of HSP's successfully gapped: 97
Length of query: 765
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 664
Effective length of database: 3,881,772
Effective search space: 2577496608
Effective search space used: 2577496608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)