RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12546
         (765 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 38  EHVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNE 97
            H   +   +  L   D  +D V++V  E+   HK +L A S  F ++    L  +    
Sbjct: 7   RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVI 66

Query: 98  IELHDTNIVAFKCLLKYIYSGKLSF 122
               + N   F  LL ++Y+ +L+ 
Sbjct: 67  NLDPEINPEGFNILLDFMYTSRLNL 91


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 39  HVQFLSEMIGNLYLNDEFSDTVLIVQNEKISVHKVILAARSEYFRALLYGGLCESNQNEI 98
           H   L      + L     D V++V +++   H+ +LA  S+ F       L   N    
Sbjct: 11  HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEI-----LFHRNSQHY 65

Query: 99  ELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDIL 134
            L   +   F+ +L+Y Y+  L     K + + D+L
Sbjct: 66  TLDFLSPKTFQQILEYAYTATLQA---KAEDLDDLL 98



 Score = 35.4 bits (81), Expect = 0.005
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 157 CESNQNEIELHDTNIVAFKCLLKYIYSGKLSFRNLKDDVILDILGLSHKYGFQDLENSIS 216
              N     L   +   F+ +L+Y Y+  L     K + + D+L  +     + LE    
Sbjct: 58  FHRNSQHYTLDFLSPKTFQQILEYAYTATLQA---KAEDLDDLLYAAEILEIEYLEEQCL 114

Query: 217 DYLRVI 222
             L  I
Sbjct: 115 KMLETI 120


>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain
           {Micromonospora viridifaciens [TaxId: 1881]}
          Length = 142

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 460 NGDVNN-YDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLL--LWDKDLRSYS 516
           +G  +N  D       HT      +    + I + LG    ++ ++        + +   
Sbjct: 18  DGRASNVIDGNPSTFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSANEQVAD 77

Query: 517 YFIEVSIDQKKWTRVIDYTRFYCRS-WQFLYFPTQVVQYIRVVGT-NNTVNKVFHIVSFE 574
           Y I  S++   W   +   RF      Q   FP +  +YIR+V     T +K   +   E
Sbjct: 78  YEIYTSLNGTTWDGPVASGRFTTSLAPQRAVFPARDARYIRLVALSEQTGHKYAAVAELE 137

Query: 575 IM 576
           + 
Sbjct: 138 VE 139


>d1k3ia2 b.18.1.1 (A:-12-150) Galactose oxidase, N-terminal domain
           {Fungi (Fusarium sp.) [TaxId: 29916]}
          Length = 162

 Score = 31.5 bits (70), Expect = 0.19
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 464 NNYDMENGYTRHTITEATSSTSCDNGILIKLGTQAIVNHIKLLL---WDKDLRSYSYFIE 520
              D       HT   A       +   I + T   VN + +L     +++     + + 
Sbjct: 41  KAIDGNKDTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVY 100

Query: 521 VSIDQKKWTRVIDYTRFYC-RSWQFLYFPTQVVQYIRVVGT-NNTVNKVFHIVSFEIMYT 578
           +S D   W   +    ++   + ++  F T+  +Y+R+V            I    + + 
Sbjct: 101 LSSDGTNWGSPVASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINV-FQ 159

Query: 579 AQT 581
           A +
Sbjct: 160 ASS 162


>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla
           campanulata) [TaxId: 81759]}
          Length = 119

 Score = 27.3 bits (60), Expect = 3.7
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 618 DGNTVKYD-----WDSGYTCHQLGSGAILVQLGQPYMLDSMRLLLW 658
           D N V YD     W +       G  A+L   G   ++ +  + +W
Sbjct: 39  DCNLVLYDNNNPIWATNTGGLGNGCRAVLQPDGVLVVITNENVTVW 84


>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
           [TaxId: 274]}
          Length = 224

 Score = 27.3 bits (60), Expect = 5.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 111 LLKYIYSGKLSFRNLKDDVILDILGKKQNKGTTLTQNFRALL 152
           +++ I +G++ FRN K   I   +GK       L  N RA +
Sbjct: 148 IIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFI 189


>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 215

 Score = 27.1 bits (59), Expect = 7.7
 Identities = 9/96 (9%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 400 ELLTTVRSSGIISADKILDAIELQTNDKVQYRGYLKPEENLATSKMGTMVMQGEMKNALL 459
             +  +++ GII + ++  A       K   R     ++    + +   +     +    
Sbjct: 10  RTVEMLKAEGIIRSKEVERAFL-----KYP-RYLSVEDKYKKYAHIDEPLPIPAGQTVSA 63

Query: 460 NGD-VNNYDMENGYTRHTITEATSSTSCDNGILIKL 494
                   ++ N      I E  + +  +  ++ ++
Sbjct: 64  PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEI 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,837,064
Number of extensions: 135832
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 13
Length of query: 765
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 673
Effective length of database: 1,144,436
Effective search space: 770205428
Effective search space used: 770205428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)