BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12547
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSK|B Chain B, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|E Chain E, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|H Chain H, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|K Chain K, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
Length = 214
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 81 FSNSPSAMRIAWGVYIYFLAKISELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAK 140
+ SP +M ++ G + K SE +DT F ++K +Q L +Y G +
Sbjct: 4 LTQSPKSMSVSVGERVTLSCKASENVDTYVFWFQQKPDQSPKLLLY----------GPSN 53
Query: 141 YYPGGHGTFIGTINSFVHVIMYTYYALAALGD 172
Y G F G+ ++ + + L D
Sbjct: 54 RYTGVPDRFTGSGSTTDFTLTISSVQAEDLAD 85
>pdb|4A34|A Chain A, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|B Chain B, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|C Chain C, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|D Chain D, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|E Chain E, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|F Chain F, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|G Chain G, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|H Chain H, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|I Chain I, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|J Chain J, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|K Chain K, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|L Chain L, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|M Chain M, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|N Chain N, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|O Chain O, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|P Chain P, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|Q Chain Q, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|R Chain R, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|S Chain S, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
pdb|4A34|T Chain T, Crystal Structure Of The Fucose Mutarotase In Complex With
L-Fucose From Streptococcus Pneumoniae
Length = 147
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 102 ISELLDTVFFVLRKK---HNQITFLHMYHHTVMPMVSWGAAKYYPGGHGTFIGTINSFVH 158
I ELLD++ +++ + I F+++ +P + WG + GHGT + TI
Sbjct: 50 IPELLDSILYLMPLDSYVDSSIQFMNVVSGDDIPKI-WGTYRQMIEGHGTDLKTITYLRR 108
Query: 159 VIMYTY----YALAALGD 172
Y YA+ A G+
Sbjct: 109 EDFYERSKKAYAIVATGE 126
>pdb|2VGD|A Chain A, Crystal Structure Of Environmental Isolated Gh11 In
Complex With Xylobiose And Feruloyl-Arabino-Xylotriose
Length = 218
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 122 FLHMYHHTVMPMV------SWGAAKYYPGGHGTFIGTINS 155
+L +Y T P+V SWG+ + PG GTF+GT+NS
Sbjct: 97 YLALYGWTTNPLVEYYVVDSWGSWRP-PGSDGTFLGTVNS 135
>pdb|2VUL|A Chain A, Thermostable Mutant Of Environmentally Isolated Gh11
Xylanase
Length = 216
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 122 FLHMYHHTVMPMV------SWGAAKYYPGGHGTFIGTINS 155
+L +Y T P+V SWG+ + PG GTF+GT+NS
Sbjct: 97 YLALYGWTTNPLVEYYVVDSWGSWRP-PGSDGTFLGTVNS 135
>pdb|2VUJ|A Chain A, Environmentally Isolated Gh11 Xylanase
Length = 219
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 122 FLHMYHHTVMPMV------SWGAAKYYPGGHGTFIGTINS 155
+L +Y T P+V SWG+ + PG GTF+GT+NS
Sbjct: 97 YLALYGWTTNPLVEYYVVDSWGSWRP-PGSDGTFLGTVNS 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,915,470
Number of Sequences: 62578
Number of extensions: 230776
Number of successful extensions: 438
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 6
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)