Query psy12547
Match_columns 181
No_of_seqs 138 out of 1091
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:08:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 2.9E-55 6.3E-60 369.3 12.7 175 2-178 21-197 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 1E-52 2.3E-57 351.7 14.6 167 8-177 2-176 (250)
3 PTZ00251 fatty acid elongase; 100.0 2.7E-53 5.8E-58 359.1 9.5 164 1-173 15-191 (272)
4 KOG3072|consensus 100.0 4.7E-44 1E-48 299.9 7.4 161 10-178 37-203 (282)
5 PF06210 DUF1003: Protein of u 35.2 1.8E+02 0.0039 21.3 6.6 55 9-66 1-55 (108)
6 COG5548 Small integral membran 29.1 50 0.0011 24.0 2.2 13 29-41 70-82 (105)
7 KOG3187|consensus 24.2 4.3E+02 0.0092 22.1 12.5 122 42-176 9-133 (223)
8 KOG3159|consensus 16.4 48 0.001 29.1 0.0 14 122-135 151-164 (336)
9 COG4420 Predicted membrane pro 15.9 6.2E+02 0.013 20.7 6.4 55 9-66 55-109 (191)
10 PF01333 Apocytochr_F_C: Apocy 13.1 88 0.0019 23.5 0.7 14 103-116 93-106 (118)
No 1
>KOG3071|consensus
Probab=100.00 E-value=2.9e-55 Score=369.27 Aligned_cols=175 Identities=49% Similarity=0.789 Sum_probs=162.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhhhhhhcCCCCCcchhhHHhHhHHHHHHHHHHHHHHHHHhh--ccccceeccC
Q psy12547 2 RTNHWPLLGSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAMDAAW--THYSWKCEPV 79 (181)
Q Consensus 2 r~~~wpl~~sp~~~~~i~~~Yl~~V~~~g~~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~~~~~~--~~~~~~C~~~ 79 (181)
|++ ||++++|+++..++.+|+ +|.+.||++|+||||++||+++.+||++|++.|++++.+.....+ ..+++.|+++
T Consensus 21 ~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c~~~ 98 (274)
T KOG3071|consen 21 RVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRCQPC 98 (274)
T ss_pred ccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 444 999999999999999999 666799999999999999999999999999999997777666555 4799999999
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhhhhHHHHHHhcCCCcceeEeeecccchhhhhhhheeeccccchHHHHHHHHHHHH
Q psy12547 80 DFSNSPSAMRIAWGVYIYFLAKISELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAKYYPGGHGTFIGTINSFVHV 159 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~f~lsK~~El~DTvf~vLrkk~~qlsFLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~ 159 (181)
+.++++..+++.+++|+||+||+.||+||+|+|||||++|+||||+|||++|+..+|..+++.+||+.++.+.+|++||+
T Consensus 99 ~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHv 178 (274)
T KOG3071|consen 99 FPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHV 178 (274)
T ss_pred CCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHH
Confidence 88888888899999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q psy12547 160 IMYTYYALAALGDQLSTCK 178 (181)
Q Consensus 160 iMY~YY~l~a~g~~~~~~~ 178 (181)
+||+||++||+|+|+|+.+
T Consensus 179 iMY~YYflsa~G~~v~~~l 197 (274)
T KOG3071|consen 179 IMYGYYFLSAFGPRVQWYL 197 (274)
T ss_pred HHHHHHHHHhhCcCccccc
Confidence 9999999999999998754
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1e-52 Score=351.67 Aligned_cols=167 Identities=48% Similarity=0.852 Sum_probs=148.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhhhhcCCCCCcchhhHHhHhHHHHHHHHHHHHHHHHHh---h---ccccceeccCCC
Q psy12547 8 LLGSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAMDAA---W---THYSWKCEPVDF 81 (181)
Q Consensus 8 l~~sp~~~~~i~~~Yl~~V~~~g~~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~~~~~---~---~~~~~~C~~~~~ 81 (181)
|++||++++.++++|+++|+ .||++||||||++||+++.+||++|+++|++++.+.+... . |.++..|++.+.
T Consensus 2 l~~~~~~~~~~~~~Yl~~V~-~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~ 80 (250)
T PF01151_consen 2 LMSNPWFPILIVVLYLLFVF-LGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDF 80 (250)
T ss_pred cccCCHHHHHHHHHHHHHHH-HHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC
Confidence 47899999999999999995 9999999999999999999999999999999999888432 1 457889964432
Q ss_pred -CCCccchhhHHHHHHHHHHHHHhhhhHHHHHHhcCCCcceeEeeecccchhhhhhhheeeccccchHHHHHHHHHHHHH
Q psy12547 82 -SNSPSAMRIAWGVYIYFLAKISELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAKYYPGGHGTFIGTINSFVHVI 160 (181)
Q Consensus 82 -~~~~~~~~~~~~~~~f~lsK~~El~DTvf~vLrkk~~qlsFLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~i 160 (181)
+++....++++|.|+|++||++|++||+|+||||| |+||||||||++|++++|..+++.++|+.++++++|++||++
T Consensus 81 ~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~i 158 (250)
T PF01151_consen 81 DPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVI 158 (250)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHH
Confidence 23334556899999999999999999999999999 999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHhcCCC-CCCC
Q psy12547 161 MYTYYALAALGDQ-LSTC 177 (181)
Q Consensus 161 MY~YY~l~a~g~~-~~~~ 177 (181)
||+||+++|+|.| .+++
T Consensus 159 MY~YY~l~a~g~~~~~~~ 176 (250)
T PF01151_consen 159 MYSYYFLSALGIRKVPRW 176 (250)
T ss_pred HHHHHHHHhcccccchhH
Confidence 9999999999987 4343
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=2.7e-53 Score=359.06 Aligned_cols=164 Identities=22% Similarity=0.407 Sum_probs=143.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhhhcC----CCCCc-chhhHHhHhHHHHHHHHHHHHHHHHH----hh--
Q psy12547 1 KRTNHWPLLGSPIPGLTIIGLYLYFILSYGPRFMAN----RKPLN-LRYVLIVYNFFQVGISVWLVWEAMDA----AW-- 69 (181)
Q Consensus 1 ~r~~~wpl~~sp~~~~~i~~~Yl~~V~~~g~~~M~~----Rkp~~-Lk~~~~~yN~~l~~~S~~~~~~~~~~----~~-- 69 (181)
+|+++| |++||++++.++++|+++|+ .||++||| |||++ ||+++++||++|+++|++++.+.... ..
T Consensus 15 ~~~~~w-l~~~~~~~~~i~~~Yl~~V~-~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~ 92 (272)
T PTZ00251 15 HAVQKW-LASNVDICVYIAAAYLTFVF-KGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRKY 92 (272)
T ss_pred HHHHHH-HHhCCHHHHHHHHHHHHHHH-HHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 588999 89999999999999999997 99999974 99999 99999999999999999998887633 23
Q ss_pred ccccceeccCCCCCCc-cchhhHHHHHHHHHHHHHhhhhHHHHHHhcCCCcceeEeeecccchhhhhhhheeeccccchH
Q psy12547 70 THYSWKCEPVDFSNSP-SAMRIAWGVYIYFLAKISELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAKYYPGGHGT 148 (181)
Q Consensus 70 ~~~~~~C~~~~~~~~~-~~~~~~~~~~~f~lsK~~El~DTvf~vLrkk~~qlsFLHvyHH~~~~~~~w~~~~~~~~~~~~ 148 (181)
|.++..|+.. +++ ..++.++|+|+|++||++||+||+|+||||| |+||||||||++|++.+|..+ .++++..
T Consensus 93 g~~~~~C~~~---~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~--~~g~~~~ 165 (272)
T PTZ00251 93 GLHDTLCTFR---EDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSY--QQGSSIW 165 (272)
T ss_pred CcceeeecCC---CCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHH--hCCCcHH
Confidence 5577788642 222 2356899999999999999999999999999 999999999999999999975 3444444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12547 149 -FIGTINSFVHVIMYTYYALAALGDQ 173 (181)
Q Consensus 149 -~~~~~Ns~VH~iMY~YY~l~a~g~~ 173 (181)
+++.+|++||++||+||+++|+|+|
T Consensus 166 ~~~~~lNs~VH~iMY~YY~lsa~g~~ 191 (272)
T PTZ00251 166 ICAAAMNYFVHSIMYFYFALSEAGFK 191 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4699999999999999999999987
No 4
>KOG3072|consensus
Probab=100.00 E-value=4.7e-44 Score=299.90 Aligned_cols=161 Identities=31% Similarity=0.483 Sum_probs=139.8
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhhhcCCCCCcchhhHHhHhHHHHHHHHHHHH----HHHHHhh--ccccceeccCCCCC
Q psy12547 10 GSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVW----EAMDAAW--THYSWKCEPVDFSN 83 (181)
Q Consensus 10 ~sp~~~~~i~~~Yl~~V~~~g~~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~----~~~~~~~--~~~~~~C~~~~~~~ 83 (181)
+.+...+.++++|++.++ .|+++|+|||||+|++++.+||..++++|+..+. |++.... |.....|+..+...
T Consensus 37 ~~~~~si~is~~Y~v~if-~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~~~~~~~Gf~~s~C~~~~~~~ 115 (282)
T KOG3072|consen 37 EHWPLSIHISIAYLVLIF-GGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFLAVFRAAGFKGSYCDANNLGL 115 (282)
T ss_pred hccchhHHHHHHHHHHHH-HHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCc
Confidence 345567899999999997 9999999999999999999999999999997544 4443333 66778999876543
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhHHHHHHhcCCCcceeEeeecccchhhhhhhheeeccccchHHHHHHHHHHHHHHHH
Q psy12547 84 SPSAMRIAWGVYIYFLAKISELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAKYYPGGHGTFIGTINSFVHVIMYT 163 (181)
Q Consensus 84 ~~~~~~~~~~~~~f~lsK~~El~DTvf~vLrkk~~qlsFLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~ 163 (181)
+ ..++|+|+|.+||..|+.||+|+||||| |++|||||||++++++.|.++.- ..+.+.+++.+|.+||++||+
T Consensus 116 ~----~~~fW~~~fvlSK~~ElgDT~FiVLRKr--PliFlHWYHHi~~~iy~~~~y~~-~~a~~rw~i~mNy~vHa~MY~ 188 (282)
T KOG3072|consen 116 S----VSGFWSWLFVLSKAPELGDTIFIVLRKR--PLIFLHWYHHILVLIYAWHSYIE-KVAWGRWFIWMNYLVHAFMYS 188 (282)
T ss_pred c----hHHHHHHHHHHHhhhhhhceeEEEeccC--ccEEEechhhheeeeeeeeeccc-CCcCceEEEEEehhHHHHHHH
Confidence 3 3799999999999999999999999999 79999999999999999998753 345567889999999999999
Q ss_pred HHHHHhcCCCCCCCC
Q psy12547 164 YYALAALGDQLSTCK 178 (181)
Q Consensus 164 YY~l~a~g~~~~~~~ 178 (181)
||+++|+|.|+||.+
T Consensus 189 YY~lrsl~ir~Pk~v 203 (282)
T KOG3072|consen 189 YYALRSLGIRLPKSV 203 (282)
T ss_pred HHHHHHcCCCCChHH
Confidence 999999999999865
No 5
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.20 E-value=1.8e+02 Score=21.33 Aligned_cols=55 Identities=11% Similarity=-0.055 Sum_probs=33.7
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhhhcCCCCCcchhhHHhHhHHHHHHHHHHHHHHHH
Q psy12547 9 LGSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAMD 66 (181)
Q Consensus 9 ~~sp~~~~~i~~~Yl~~V~~~g~~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~~~ 66 (181)
++|+.+.+..+++.++-+ ......-.+++|+--+ .++-|+++++..++.+.-++.
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi--~~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~ap~Ilm 55 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWI--LLNILAPPRPAFDPYP-FILLNLVLSLEAAYQAPLILM 55 (108)
T ss_pred CCcHHHHHHHHHHHHHHH--HHHhhccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHH
Confidence 366666555555444443 3444444445666555 557899999999987665443
No 6
>COG5548 Small integral membrane protein [Function unknown]
Probab=29.07 E-value=50 Score=24.02 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=11.6
Q ss_pred hhhhhhcCCCCCc
Q psy12547 29 YGPRFMANRKPLN 41 (181)
Q Consensus 29 ~g~~~M~~Rkp~~ 41 (181)
.++|.||.|||..
T Consensus 70 ~~~R~~~sRKpvP 82 (105)
T COG5548 70 FALRLVRSRKPVP 82 (105)
T ss_pred cchhccccCCCcc
Confidence 7999999999975
No 7
>KOG3187|consensus
Probab=24.19 E-value=4.3e+02 Score=22.10 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=65.4
Q ss_pred chhhHHhHhHHHHHHHHHHHHHHHHHhhccccceeccCCCCCCccchhhHHHHHHHHHHHHHhhhhHHHHHH--hcCCCc
Q psy12547 42 LRYVLIVYNFFQVGISVWLVWEAMDAAWTHYSWKCEPVDFSNSPSAMRIAWGVYIYFLAKISELLDTVFFVL--RKKHNQ 119 (181)
Q Consensus 42 Lk~~~~~yN~~l~~~S~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~f~lsK~~El~DTvf~vL--rkk~~q 119 (181)
-+..+.+||+.+.+.-.++.........++. ++. .+ -....+...+.--.-++|.+.... -|.+.=
T Consensus 9 ~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~----~~~---~~-----y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v 76 (223)
T KOG3187|consen 9 KKSYLFLYNLVSFVGWIVLLLATVVLYLTKG----SPA---VL-----YDSIEKVLKFCQTLALLEIINASFGLVKSSPV 76 (223)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccCC----Ccc---cc-----HHHHHHHHHHHHHHHHHHHHHHHhccccCCce
Confidence 4678999999999974433333222111111 110 11 112223333334444555554444 333334
Q ss_pred ceeEeeecccchhhhhhhheeeccccch-HHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy12547 120 ITFLHMYHHTVMPMVSWGAAKYYPGGHG-TFIGTINSFVHVIMYTYYALAALGDQLST 176 (181)
Q Consensus 120 lsFLHvyHH~~~~~~~w~~~~~~~~~~~-~~~~~~Ns~VH~iMY~YY~l~a~g~~~~~ 176 (181)
+++.|+-|-..++...-....+...+.+ ......=+..-.+=|+||+.+..|- .|+
T Consensus 77 ~t~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~-~p~ 133 (223)
T KOG3187|consen 77 VTLFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV-LPK 133 (223)
T ss_pred eeeeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC-Cch
Confidence 5778888877665544433333222222 3334566888999999999999986 454
No 8
>KOG3159|consensus
Probab=16.41 E-value=48 Score=29.14 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=10.6
Q ss_pred eEeeecccchhhhh
Q psy12547 122 FLHMYHHTVMPMVS 135 (181)
Q Consensus 122 FLHvyHH~~~~~~~ 135 (181)
-=.+|||+|+++-+
T Consensus 151 r~raYHH~T~L~~a 164 (336)
T KOG3159|consen 151 RNRAYHHCTMLLNA 164 (336)
T ss_pred CCceeeeEEeEecc
Confidence 34599999998744
No 9
>COG4420 Predicted membrane protein [Function unknown]
Probab=15.92 E-value=6.2e+02 Score=20.65 Aligned_cols=55 Identities=16% Similarity=0.008 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhhhcCCCCCcchhhHHhHhHHHHHHHHHHHHHHHH
Q psy12547 9 LGSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAMD 66 (181)
Q Consensus 9 ~~sp~~~~~i~~~Yl~~V~~~g~~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~~~ 66 (181)
.+||.+.+.-+++.++-+ .+.-.-.-..||+--+++ +=|+++++.+++.+.-++.
T Consensus 55 ~Gsw~fil~~~~~ll~Wi--~lNl~~~~~~~wDpyPFi-~LnLllS~~AaiqAp~Ilm 109 (191)
T COG4420 55 GGSWAFILTFTLLLLLWI--VLNLFLVPGLAWDPYPFI-LLNLLLSTLAAIQAPLILM 109 (191)
T ss_pred cCChHHHHHHHHHHHHHH--HHHHhhhcCCcCCCccHH-HHHHHHHHHHHHHHhHHHH
Confidence 467777766666665554 345555555788765555 6699999999887655443
No 10
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=13.15 E-value=88 Score=23.53 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=11.2
Q ss_pred HhhhhHHHHHHhcC
Q psy12547 103 SELLDTVFFVLRKK 116 (181)
Q Consensus 103 ~El~DTvf~vLrkk 116 (181)
.=++--+|+|||||
T Consensus 93 ~v~laQi~LVLKKK 106 (118)
T PF01333_consen 93 AVMLAQIFLVLKKK 106 (118)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHheeeeehh
Confidence 34567889999999
Done!