Query psy12547
Match_columns 181
No_of_seqs 138 out of 1091
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:08:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wb6_A AFV1-102; archaeal viru 12.2 94 0.0032 21.7 1.6 14 102-115 40-53 (130)
2 1q90_A Apocytochrome F; membra 12.1 34 0.0012 28.2 -0.8 13 104-116 262-274 (292)
3 1m5a_B Insulin B chain; alpha 8.8 1.8E+02 0.0062 15.8 1.6 13 104-116 10-22 (30)
4 2koe_A Human cannabinoid recep 7.8 46 0.0016 18.0 -1.2 18 148-165 7-24 (40)
5 3hi2_B Motility quorum-sensing 7.2 1.1E+02 0.0036 21.4 0.3 14 33-46 3-17 (101)
6 4dkl_A MU-type opioid receptor 6.6 3.1E+02 0.011 22.0 3.0 16 150-165 427-442 (464)
7 1vf5_C Cytochrome F; photosynt 6.5 2E+02 0.0069 23.6 1.6 13 104-116 265-277 (289)
8 3aa0_C 21MER peptide from leuc 6.4 1.4E+02 0.0047 15.4 0.4 14 28-41 7-20 (26)
9 2ks9_A Substance-P receptor; w 6.3 3.4E+02 0.012 21.1 3.0 16 150-165 293-308 (364)
10 3eml_A Human adenosine A2A rec 6.2 3.4E+02 0.012 22.0 3.0 18 148-165 436-453 (488)
No 1
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=12.18 E-value=94 Score=21.65 Aligned_cols=14 Identities=50% Similarity=0.973 Sum_probs=12.0
Q ss_pred HHhhhhHHHHHHhc
Q psy12547 102 ISELLDTVFFVLRK 115 (181)
Q Consensus 102 ~~El~DTvf~vLrk 115 (181)
..||+|..|+|..|
T Consensus 40 msefldsmflviek 53 (130)
T 2wb6_A 40 MSEFLDSMFLVIEK 53 (130)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 46999999999965
No 2
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=12.08 E-value=34 Score=28.20 Aligned_cols=13 Identities=54% Similarity=0.769 Sum_probs=10.8
Q ss_pred hhhhHHHHHHhcC
Q psy12547 104 ELLDTVFFVLRKK 116 (181)
Q Consensus 104 El~DTvf~vLrkk 116 (181)
=++--+|+||+||
T Consensus 262 v~laQi~LVLKKK 274 (292)
T 1q90_A 262 VLLTQVLLVLKKK 274 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhheeehh
Confidence 4567889999999
No 3
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=8.83 E-value=1.8e+02 Score=15.77 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=10.9
Q ss_pred hhhhHHHHHHhcC
Q psy12547 104 ELLDTVFFVLRKK 116 (181)
Q Consensus 104 El~DTvf~vLrkk 116 (181)
||+|+..+|-.-|
T Consensus 10 ~LVdaL~~vCgdR 22 (30)
T 1m5a_B 10 HLVEALYLVCGER 22 (30)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHhccC
Confidence 7899999988665
No 4
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=7.76 E-value=46 Score=18.02 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12547 148 TFIGTINSFVHVIMYTYY 165 (181)
Q Consensus 148 ~~~~~~Ns~VH~iMY~YY 165 (181)
.+.+.+|+.+.++.|+..
T Consensus 7 ~~l~~~ns~lNPiIY~~~ 24 (40)
T 2koe_A 7 SMLCLLNSTVNPIIYALR 24 (40)
T ss_dssp HHHHHHHHHSSTTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 346788999999999654
No 5
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=7.21 E-value=1.1e+02 Score=21.45 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=8.9
Q ss_pred hhcCCCC-CcchhhH
Q psy12547 33 FMANRKP-LNLRYVL 46 (181)
Q Consensus 33 ~M~~Rkp-~~Lk~~~ 46 (181)
-|++|+| ++|..+-
T Consensus 3 ~MEKrtPhy~L~~ik 17 (101)
T 3hi2_B 3 HMEKRTPHTRLSQVK 17 (101)
T ss_dssp -CEESSCSSCHHHHH
T ss_pred cCccCCCCCcHHHHH
Confidence 3888888 5665443
No 6
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=6.58 E-value=3.1e+02 Score=22.03 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12547 150 IGTINSFVHVIMYTYY 165 (181)
Q Consensus 150 ~~~~Ns~VH~iMY~YY 165 (181)
.+.+|+.++++.|++.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 5688999999999875
No 7
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=6.54 E-value=2e+02 Score=23.58 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.8
Q ss_pred hhhhHHHHHHhcC
Q psy12547 104 ELLDTVFFVLRKK 116 (181)
Q Consensus 104 El~DTvf~vLrkk 116 (181)
=++--+|+||+||
T Consensus 265 v~laQi~LVLKKK 277 (289)
T 1vf5_C 265 VMLAQLMLILKKK 277 (289)
T ss_dssp HHHHHHHHHHHTG
T ss_pred HHHHHHhheeehh
Confidence 4567889999999
No 8
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=6.41 E-value=1.4e+02 Score=15.36 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=10.5
Q ss_pred HhhhhhhcCCCCCc
Q psy12547 28 SYGPRFMANRKPLN 41 (181)
Q Consensus 28 ~~g~~~M~~Rkp~~ 41 (181)
++.|+-||+.+|-+
T Consensus 7 klrpkr~kkqqps~ 20 (26)
T 3aa0_C 7 KLRPKRNKKQQPTQ 20 (26)
T ss_pred hcCcchhhccCCcc
Confidence 36788898888754
No 9
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=6.26 E-value=3.4e+02 Score=21.06 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12547 150 IGTINSFVHVIMYTYY 165 (181)
Q Consensus 150 ~~~~Ns~VH~iMY~YY 165 (181)
.+.+|+.++++.|.+.
T Consensus 293 l~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999999875
No 10
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=6.19 E-value=3.4e+02 Score=22.01 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12547 148 TFIGTINSFVHVIMYTYY 165 (181)
Q Consensus 148 ~~~~~~Ns~VH~iMY~YY 165 (181)
.+.+.+|+.++++.|++.
T Consensus 436 ~~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 436 IVLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhhhhhc
Confidence 356689999999999875
Done!