Query psy12547
Match_columns 181
No_of_seqs 138 out of 1091
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 22:08:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12547.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12547hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 41.7 6.2 0.00045 21.3 1.6 13 104-116 16-28 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 33.1 6 0.00044 22.3 0.7 13 104-116 15-27 (45)
3 d1tuba2 d.79.2.1 (A:246-440) T 6.8 58 0.0042 22.9 0.5 28 93-127 137-164 (195)
4 d2v5pc1 g.1.1.1 (C:6-63) Insul 6.0 1E+02 0.0076 17.8 1.3 14 103-116 6-19 (58)
5 d1wqji1 g.1.1.1 (I:2-63) Insul 5.8 1.1E+02 0.0078 17.9 1.3 14 103-116 7-20 (62)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 4.9 2.5E+02 0.018 14.4 4.2 23 35-57 5-27 (37)
7 g1mso.1 g.1.1.1 (B:,A:) Insuli 4.6 1.8E+02 0.013 16.2 1.6 14 103-116 9-22 (51)
8 d1wlqc_ a.4.5.52 (C:) DNA repl 4.4 2.2E+02 0.016 19.8 2.5 26 97-122 26-51 (187)
9 d2d8za2 g.39.1.3 (A:33-64) Fou 3.8 79 0.0058 16.1 -0.4 14 29-42 10-24 (32)
10 d1d4ba_ d.15.2.1 (A:) Cell dea 3.5 28 0.002 23.6 -3.2 22 107-128 96-121 (122)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=41.72 E-value=6.2 Score=21.34 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.5
Q ss_pred hhhhHHHHHHhcC
Q psy12547 104 ELLDTVFFVLRKK 116 (181)
Q Consensus 104 El~DTvf~vLrkk 116 (181)
-++--+++||+||
T Consensus 16 v~laQi~lVlKKK 28 (37)
T d1vf5c3 16 VMLAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHH
Confidence 3566789999999
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=33.11 E-value=6 Score=22.28 Aligned_cols=13 Identities=54% Similarity=0.769 Sum_probs=10.6
Q ss_pred hhhhHHHHHHhcC
Q psy12547 104 ELLDTVFFVLRKK 116 (181)
Q Consensus 104 El~DTvf~vLrkk 116 (181)
-.+--+|+||+||
T Consensus 15 v~laQi~LVLKKK 27 (45)
T d1q90a3 15 VLLTQVLLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567789999999
No 3
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.76 E-value=58 Score=22.89 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCcceeEeeec
Q psy12547 93 GVYIYFLAKISELLDTVFFVLRKKHNQITFLHMYH 127 (181)
Q Consensus 93 ~~~~f~lsK~~El~DTvf~vLrkk~~qlsFLHvyH 127 (181)
..-.-.+.|+.+=.|..+ +|| .|||||=
T Consensus 137 TsI~~~f~~i~~~Fdkl~---~rk----Aflh~Y~ 164 (195)
T d1tuba2 137 TAIAEAWARLDHKFDLMY---AKR----AFVHWYV 164 (195)
T ss_dssp TTHHHHHHHHHHHHHHHT---TTT----CCTTTGG
T ss_pred hhHHHHHHHHHHHHHHHH---hhc----hHHHHhc
Confidence 344556777777777766 444 7999984
No 4
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.03 E-value=1e+02 Score=17.79 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=11.2
Q ss_pred HhhhhHHHHHHhcC
Q psy12547 103 SELLDTVFFVLRKK 116 (181)
Q Consensus 103 ~El~DTvf~vLrkk 116 (181)
-||+||.-+|-.-+
T Consensus 6 s~LVdaL~~VCg~r 19 (58)
T d2v5pc1 6 GELVDTLQFVCGDR 19 (58)
T ss_dssp HHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 38999999988655
No 5
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.84 E-value=1.1e+02 Score=17.94 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.3
Q ss_pred HhhhhHHHHHHhcC
Q psy12547 103 SELLDTVFFVLRKK 116 (181)
Q Consensus 103 ~El~DTvf~vLrkk 116 (181)
-||+||.-||-.-+
T Consensus 7 s~LvdaL~~VCG~r 20 (62)
T d1wqji1 7 AELVDALQFVCGDR 20 (62)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccC
Confidence 38999999998655
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.95 E-value=2.5e+02 Score=14.35 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=16.7
Q ss_pred cCCCCCcchhhHHhHhHHHHHHH
Q psy12547 35 ANRKPLNLRYVLIVYNFFQVGIS 57 (181)
Q Consensus 35 ~~Rkp~~Lk~~~~~yN~~l~~~S 57 (181)
.|++|.+|.+--..|-+.++..-
T Consensus 5 pn~q~veLNrtsLy~GlLlifvl 27 (37)
T d2axtl1 5 PNRQPVELNRTSLYLGLLLILVL 27 (37)
T ss_dssp SSCCCBCCCHHHHHHHHHHHHHH
T ss_pred CCCCccccchhhHHHHHHHHHHH
Confidence 47889999888877776655433
No 7
>g1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=1.8e+02 Score=16.23 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.6
Q ss_pred HhhhhHHHHHHhcC
Q psy12547 103 SELLDTVFFVLRKK 116 (181)
Q Consensus 103 ~El~DTvf~vLrkk 116 (181)
-||+|+..+|-.-|
T Consensus 9 s~LVdaL~~vCg~r 22 (51)
T g1mso.1 9 SHLVEALYLVCGER 22 (51)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccC
Confidence 38999999998765
No 8
>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.41 E-value=2.2e+02 Score=19.78 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhHHHHHHhcCCCccee
Q psy12547 97 YFLAKISELLDTVFFVLRKKHNQITF 122 (181)
Q Consensus 97 f~lsK~~El~DTvf~vLrkk~~qlsF 122 (181)
=.|+...+-+||+.=.++.|..+.+|
T Consensus 26 ~~L~~~f~~ldtv~~~l~~R~~~~tf 51 (187)
T d1wlqc_ 26 QVLVEMFHSMDTIVSMLHNRSETVTF 51 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCBH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 36788899999997777666545443
No 9
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.84 E-value=79 Score=16.15 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=9.1
Q ss_pred hhhhh-hcCCCCCcc
Q psy12547 29 YGPRF-MANRKPLNL 42 (181)
Q Consensus 29 ~g~~~-M~~Rkp~~L 42 (181)
.|+|+ ||+-+||=+
T Consensus 10 ~GQry~~rd~~PyC~ 24 (32)
T d2d8za2 10 SGQRFTARDDFAYCL 24 (32)
T ss_dssp TTSCCEESSSSEECH
T ss_pred cCceeeecCCCeehH
Confidence 35554 888888744
No 10
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.48 E-value=28 Score=23.57 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCC----cceeEeeecc
Q psy12547 107 DTVFFVLRKKHN----QITFLHMYHH 128 (181)
Q Consensus 107 DTvf~vLrkk~~----qlsFLHvyHH 128 (181)
||+|++|++.++ +=.-+|.-||
T Consensus 96 nT~lmvL~~gqkW~P~~~~~~~~~~~ 121 (122)
T d1d4ba_ 96 DTCLMVLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp CCCCCEECSSCCCCCCCCSCCTTCCC
T ss_pred CCEEEEECCCCccCCCcCcceeeecc
Done!