RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12547
(181 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 185 bits (471), Expect = 2e-59
Identities = 83/168 (49%), Positives = 106/168 (63%), Gaps = 4/168 (2%)
Query: 7 PLLGSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAMD 66
PLL SP P + II LYL F+ GP+ M NRKP +L+ +LIV+N F V +S++ + +
Sbjct: 1 PLLSSPWPVILIIVLYLVFVF-LGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59
Query: 67 AAW-THYSWKCEPVDFSNSPSAMRIAWGVYIY--FLAKISELLDTVFFVLRKKHNQITFL 123
A + V +S P A+R+ + Y FL+K ELLDTVF VLRKK Q++FL
Sbjct: 60 GAGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFL 119
Query: 124 HMYHHTVMPMVSWGAAKYYPGGHGTFIGTINSFVHVIMYTYYALAALG 171
H+YHH M + SW KY PGGH FI +NSFVHVIMY YY LAALG
Sbjct: 120 HVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALG 167
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 52.9 bits (127), Expect = 9e-09
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 96 IYFLAKISELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAKYYPGGHGTFI--GTI 153
++ ++K+ E DT F ++ K ++ FL +HH + + +W + Y G +I +
Sbjct: 117 LFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMS---YQQGSSIWICAAAM 171
Query: 154 NSFVHVIMYTYYALAALG 171
N FVH IMY Y+AL+ G
Sbjct: 172 NYFVHSIMYFYFALSEAG 189
>gnl|CDD|238843 cd01699, RNA_dep_RNAP, RNA_dep_RNAP: RNA-dependent RNA polymerase
(RdRp) is an essential protein encoded in the genomes of
all RNA containing viruses with no DNA stage. RdRp
catalyzes synthesis of the RNA strand complementary to a
given RNA template. RdRps of many viruses are products
of processing of polyproteins. Some RdRps consist of one
polypeptide chain, and others are complexes of several
subunits. The domain organization and the 3D structure
of the catalytic center of a wide range of RdRps,
including those with a low overall sequence homology,
are conserved. The catalytic center is formed by several
motifs containing a number of conserved amino acid
residues. This subfamily represents the RNA-dependent
RNA polymerases from all positive-strand RNA eukaryotic
viruses with no DNA stage.
Length = 278
Score = 34.2 bits (79), Expect = 0.025
Identities = 34/175 (19%), Positives = 49/175 (28%), Gaps = 42/175 (24%)
Query: 10 GSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISV-WLVWEAMDAA 68
P+ + +YL + M NR VGI+ W +
Sbjct: 44 PRPLDYNIALRMYLGPFEAK---LMKNR----------GGLPIAVGINPYSRDWTILANK 90
Query: 69 WTHYSWKCEPVDFSN-----SPSAMRIAWGVYIYFLAKISELLDTVFFVLRKKHNQITFL 123
+S +D+S SP + +Y EL R +T
Sbjct: 91 LRSFSPVAIALDYSRFDSSLSPQLLEAEHSIYNALYDDDDEL------ERRNLLRSLT-- 142
Query: 124 HMYHHTVMPMVSWGAAKYY-----PGGH-GTFIGTINSFVHVIMYTYYALAALGD 172
+ H V Y P G T I NS ++ I YA LG
Sbjct: 143 NNSLHIGFNEV------YKVRGGRPSGDPLTSI--GNSIINCI-LVRYAFRKLGG 188
>gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 308
Score = 29.6 bits (67), Expect = 0.80
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 163 TYYALAALGDQLSTCKNP 180
T+Y L+ LGD L+TC +P
Sbjct: 210 TFYGLSGLGDLLATCTSP 227
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 28.4 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 90 IAWGV-YIYFLAKISELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAKY 141
WG+ ++Y + S +D V LRK+ ++I F+ + H V + AA Y
Sbjct: 15 QDWGIDHVYGIPGDS--IDAVVDALRKEQDKIKFIQVRHEEV---AALAAAAY 62
>gnl|CDD|116035 pfam07413, Herpes_UL37_2, Betaherpesvirus immediate-early
glycoprotein UL37. This family consists of several
Betaherpesvirus immediate-early glycoprotein UL37
sequences. The human cytomegalovirus (HCMV) UL37
immediate-early regulatory protein is a type I integral
membrane N-glycoprotein which traffics through the ER
and the Golgi network.
Length = 273
Score = 27.5 bits (61), Expect = 4.6
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 24 YFILSYGPRFMA---NRKPLNLRYVLIVYNFFQVGISVWLVWEAMDAAWTHYS 73
YF+ PR K + V N VG V W + A WT YS
Sbjct: 161 YFLQDICPRLSRRIYRLKVSRPKRFSTVRNETCVGRFVRNTWTSSWANWTKYS 213
>gnl|CDD|220443 pfam09852, DUF2079, Predicted membrane protein (DUF2079). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 451
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 6 WPLLGSPIPGLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAM 65
PLL SP L + L L +LS + + L +Y L + F + +
Sbjct: 251 LPLLSSPTWLLAALPLLLLNLLSG----SPSYRSLGYQYSLPLVPFLFLA--AIDGLARL 304
Query: 66 DAAWTHYSWK 75
+ + K
Sbjct: 305 QSPRSRPKLK 314
>gnl|CDD|234782 PRK00499, rnpA, ribonuclease P; Reviewed.
Length = 114
Score = 26.3 bits (59), Expect = 5.3
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 13/33 (39%)
Query: 32 RFMANRKPLNLRYVLIVY------NFFQVGISV 58
+ +ANR+ +VY F+VGISV
Sbjct: 19 KSVANRQ-------FVVYVLKNEQPHFRVGISV 44
>gnl|CDD|219138 pfam06690, DUF1188, Protein of unknown function (DUF1188). This
family consists of several hypothetical archaeal
proteins of around 260 residues in length which seem to
be specific to Methanobacterium, Methanococcus and
Methanopyrus species. The function of this family is
unknown.
Length = 252
Score = 26.6 bits (59), Expect = 8.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 23 LYFILSYGPRFMANRKPLNLRYVLIV 48
L IL+ G +FM + LIV
Sbjct: 76 LKEILNEGIKFMESINGTPGNPDLIV 101
>gnl|CDD|236884 PRK11234, nfrB, bacteriophage N4 adsorption protein B; Provisional.
Length = 727
Score = 26.6 bits (59), Expect = 9.8
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 16 LTIIGLYLY-FILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAMDAAWTHYSW 74
L ++ L LY + F++ L+ NF G+ V + + + +Y
Sbjct: 369 LQLLLLLLYESLWPDAWHFLSIFSGSAWLMTLLWLNF---GLMVNRIVQRVIFVTGYYGL 425
Query: 75 KCEPVDFSNSPSAMRIAWGVYIYFLAKI 102
S +R+ WG I F+A
Sbjct: 426 T------QGLLSVLRLLWGNLINFMANW 447
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.479
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,708,196
Number of extensions: 901920
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 30
Length of query: 181
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 90
Effective length of database: 6,901,388
Effective search space: 621124920
Effective search space used: 621124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)