RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12547
         (181 letters)



>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
           protease, inhibition, inhibitor, blood CLO; HET: TYS NDG
           NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A*
          Length = 480

 Score = 30.4 bits (69), Expect = 0.31
 Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 14/52 (26%)

Query: 65  MDAAWTHYSWKCEPVDFSNSPSAMRI-AW------GVYIYFLAKISELLDTV 109
                 +Y  + +  DFS+     +          G        I + L+ +
Sbjct: 218 KTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKG-------LIKDALENI 262


>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
           structure initiative, midwest center structural
           genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
           a.4.5.68 d.113.1.6
          Length = 273

 Score = 25.8 bits (56), Expect = 8.1
 Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 9/107 (8%)

Query: 15  GLTIIGLYLYFILSYGPRFMANRKPLNLRYVLIVYNFFQVGISVWLVWEAMDAAWTHYSW 74
           G+ I    +  + S+      +R P     V + Y  F     +    +A +  W +   
Sbjct: 98  GVVISQENIEQLHSFS---RPDRDPRG-WVVTVSYLAFIGEEPLIAGDDAKEVHWFNLER 153

Query: 75  KCEPVDFSNSPSAMRIAWGVYIYFLAKI-----SELLDTVFFVLRKK 116
             + +  S+    + +                 SE++   F  +  K
Sbjct: 154 HGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAFNRVVDK 200


>2vdx_A Corticosteroid-binding globulin; transport protein, cortisol
           binding globulin, glycoprotein, lipid-binding, disease
           mutation, CBG, SERP cleaved; 1.84A {Homo sapiens} PDB:
           2vdy_A*
          Length = 373

 Score = 25.6 bits (57), Expect = 9.6
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 15/53 (28%)

Query: 65  MDAAWTHYSWKCEPVDFSNSPSAMRI--AW------GVYIYFLAKISELLDTV 109
                 +Y  +   ++F +  +A R   ++      G       KI +L   +
Sbjct: 112 SADIKHYYESEVLAMNFQDWATASRQINSYVKNKTQG-------KIVDLFSGL 157


>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
           HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
           b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
           1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
           2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
           2jl3_A* ...
          Length = 336

 Score = 25.9 bits (57), Expect = 9.9
 Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 3/28 (10%)

Query: 123 LHMYHHTVMPMVSWGAAKYYPGGHGTFI 150
             +YH     MV W       G  GT +
Sbjct: 125 TFVYHCAPEGMVPWHVVS---GMSGTLM 149


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,049,069
Number of extensions: 175392
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 19
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.6 bits)