RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12547
         (181 letters)



>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the
           cytochrome b6f complex, transmembrane anchor
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 45

 Score = 24.8 bits (54), Expect = 1.3
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 10/46 (21%)

Query: 89  RIAWGVYIYFLAKISELLDTVFFVLRKKH------NQITFLHMYHH 128
           RI     + F + +  LL  V  VL+KK        ++ F H +HH
Sbjct: 4   RIQG--LLVFFSFV--LLTQVLLVLKKKQFEKVQLAEMNFHHHHHH 45


>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
           flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 380

 Score = 25.2 bits (54), Expect = 5.6
 Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 6/133 (4%)

Query: 43  RYVLIVYNFFQVGISVWLVWEAMDAAWTHYSWKCEPVDFSNSPSAMRIAWGVYIYFLAKI 102
                +      G +   +    D +    +     +    +P      +   +   AK+
Sbjct: 149 EQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT---FERGLELHAKV 205

Query: 103 SELLDTVFFVLRKKHNQITFLHMYHHTVMPMVSWGAAKYYPGGHGTFIGTINSFVHVIMY 162
           +   +     L K   Q+           P   + +        G  IG    F++V   
Sbjct: 206 TIFAEGCHGHLAK---QLYKKFDLRANCEPQGGFQSIPKLTFPGGLLIGCSPGFMNVPKI 262

Query: 163 TYYALAALGDQLS 175
                A     L+
Sbjct: 263 KGTHTAMKSGTLA 275


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,649
Number of extensions: 35181
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 19
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.6 bits)