BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12548
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FPN|A Chain A, The Crystal Structure Of The Ywmb Protein From Bacillus
           Subtilis
          Length = 216

 Score = 28.1 bits (61), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 25  SFVHVIMYTYYALAALGDQWQKYLWWKKYITTLQL 59
           S  HV+   + +++A  D+W++Y+   K+   LQ+
Sbjct: 158 SVEHVVEPNFVSISAFTDEWEEYIXTSKHKXNLQI 192


>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
 pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
           Mirabilis Lipase
          Length = 307

 Score = 25.8 bits (55), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 102 YNKAYGSSTPKGKGKDGKEVANGV 125
           +N  Y  + PK  G +G E+ NGV
Sbjct: 188 FNNKYPQALPKTPGGEGDEIVNGV 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,433,995
Number of Sequences: 62578
Number of extensions: 232723
Number of successful extensions: 352
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 9
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)