Query psy12548
Match_columns 151
No_of_seqs 129 out of 954
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:10:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 43.9 44 0.0015 19.1 4.2 26 78-103 11-36 (37)
2 4dkl_A MU-type opioid receptor 14.4 1.1E+02 0.0037 24.2 2.8 17 19-35 426-442 (464)
3 3vw7_A Proteinase-activated re 13.9 86 0.0029 25.1 2.1 18 18-35 434-451 (484)
4 3eml_A Human adenosine A2A rec 13.0 1.2E+02 0.0043 24.0 2.8 18 18-35 436-453 (488)
5 2koe_A Human cannabinoid recep 12.0 30 0.001 18.6 -0.9 17 18-34 7-23 (40)
6 2ks9_A Substance-P receptor; w 11.7 1.5E+02 0.005 22.6 2.8 17 19-35 292-308 (364)
7 4eiy_A Adenosine receptor A2A/ 11.7 1.4E+02 0.0049 23.3 2.8 18 18-35 395-412 (447)
8 3rze_A Histamine H1 receptor, 11.6 1.5E+02 0.005 23.3 2.8 18 18-35 412-429 (452)
9 3pbl_A D(3) dopamine receptor, 11.3 1.5E+02 0.0051 23.6 2.8 18 18-35 441-458 (481)
10 3uon_A Human M2 muscarinic ace 10.9 1.1E+02 0.0036 24.3 1.8 18 18-35 427-444 (467)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=43.91 E-value=44 Score=19.10 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q psy12548 78 GYPRWSVYFTLPNAIFFYYLFSDFYN 103 (151)
Q Consensus 78 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 103 (151)
+..+..++++.+..+...+||.++|.
T Consensus 11 ELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhhhhcc
Confidence 34567788999988999999999885
No 2
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=14.36 E-value=1.1e+02 Score=24.17 Aligned_cols=17 Identities=24% Similarity=0.596 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy12548 19 FIGTINSFVHVIMYTYY 35 (151)
Q Consensus 19 ~~~~lNs~VHviMY~YY 35 (151)
+.+.+|+.++|+.|.+.
T Consensus 426 ~L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 426 ALGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHh
Confidence 47789999999999875
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=13.87 E-value=86 Score=25.06 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12548 18 TFIGTINSFVHVIMYTYY 35 (151)
Q Consensus 18 ~~~~~lNs~VHviMY~YY 35 (151)
.+.+.+|+.++|+.|.+.
T Consensus 434 ~~L~~~ns~iNPiIY~~~ 451 (484)
T 3vw7_A 434 VCVSSISCCIDPLIYYYA 451 (484)
T ss_dssp HHHHTTHHHHHHHHHHHT
T ss_pred HHHHHhccccchHHHHHh
Confidence 356779999999999874
No 4
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=12.97 E-value=1.2e+02 Score=24.00 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12548 18 TFIGTINSFVHVIMYTYY 35 (151)
Q Consensus 18 ~~~~~lNs~VHviMY~YY 35 (151)
.+.+.+|+.++|++|.+.
T Consensus 436 ~~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 436 IVLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhhhhhc
Confidence 367889999999999875
No 5
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=12.01 E-value=30 Score=18.60 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy12548 18 TFIGTINSFVHVIMYTY 34 (151)
Q Consensus 18 ~~~~~lNs~VHviMY~Y 34 (151)
.+.+.+|+.+.|+.|+.
T Consensus 7 ~~l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 7 SMLCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778899999988854
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=11.74 E-value=1.5e+02 Score=22.63 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy12548 19 FIGTINSFVHVIMYTYY 35 (151)
Q Consensus 19 ~~~~lNs~VHviMY~YY 35 (151)
+.+.+|+.+||+.|.+.
T Consensus 292 ~l~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 292 WLAMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678999999999764
No 7
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=11.73 E-value=1.4e+02 Score=23.33 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12548 18 TFIGTINSFVHVIMYTYY 35 (151)
Q Consensus 18 ~~~~~lNs~VHviMY~YY 35 (151)
.+.+.+|+.++|+.|.+.
T Consensus 395 ~~l~~~ns~~NPiIY~~~ 412 (447)
T 4eiy_A 395 IVLSHTNSVVNPFIYAYR 412 (447)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhHhc
Confidence 367789999999999865
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=11.62 E-value=1.5e+02 Score=23.34 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12548 18 TFIGTINSFVHVIMYTYY 35 (151)
Q Consensus 18 ~~~~~lNs~VHviMY~YY 35 (151)
.+.+.+|+.++|+.|.+.
T Consensus 412 ~~L~~~ns~~NPiIY~~~ 429 (452)
T 3rze_A 412 IWLGYINSTLNPLIYPLC 429 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhc
Confidence 467899999999999874
No 9
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=11.33 E-value=1.5e+02 Score=23.57 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12548 18 TFIGTINSFVHVIMYTYY 35 (151)
Q Consensus 18 ~~~~~lNs~VHviMY~YY 35 (151)
.+.+.+|+.++|+.|.+.
T Consensus 441 ~~L~~~ns~~NPiIY~~~ 458 (481)
T 3pbl_A 441 TWLGYVNSALNPVIYTTF 458 (481)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHc
Confidence 467789999999999775
No 10
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=10.93 E-value=1.1e+02 Score=24.31 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12548 18 TFIGTINSFVHVIMYTYY 35 (151)
Q Consensus 18 ~~~~~lNs~VHviMY~YY 35 (151)
.+.+.+|+.++|+.|.+.
T Consensus 427 ~~L~~~ns~~NPiIY~~~ 444 (467)
T 3uon_A 427 YWLCYINSTINPACYALC 444 (467)
T ss_dssp HHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHc
Confidence 467889999999999875
Done!