Query psy12548
Match_columns 151
No_of_seqs 129 out of 954
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 22:10:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12548.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12548hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 48.6 17 0.0012 19.4 4.2 25 79-103 12-36 (37)
2 d1u19a_ f.13.1.2 (A:) Rhodopsi 8.5 66 0.0048 22.5 1.6 17 19-35 293-309 (348)
3 d1khva_ e.8.1.4 (A:) Viral RNA 6.4 1.8E+02 0.013 22.8 3.4 25 13-38 303-327 (497)
4 d1xr5a_ e.8.1.4 (A:) Viral RNA 5.4 2.1E+02 0.015 22.0 3.3 27 13-40 286-312 (460)
5 d1ra6a_ e.8.1.4 (A:) Viral RNA 5.2 2.5E+02 0.018 21.7 3.6 27 12-39 286-312 (461)
6 d1pd3a_ a.30.3.1 (A:) Nonstruc 4.9 1.1E+02 0.0081 17.1 0.8 14 52-65 33-46 (54)
7 d2axtf1 f.23.38.1 (F:11-45) Cy 4.7 1.3E+02 0.0094 15.5 1.0 13 49-61 22-34 (35)
8 d1sh0a_ e.8.1.4 (A:) Viral RNA 4.5 2.9E+02 0.021 21.5 3.6 28 13-41 294-321 (502)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 4.3 3.5E+02 0.026 19.4 3.7 60 51-110 33-110 (261)
10 d2e74e1 f.23.24.1 (E:1-32) Pet 4.2 2.7E+02 0.02 13.6 2.4 11 88-98 5-15 (32)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=48.58 E-value=17 Score=19.40 Aligned_cols=25 Identities=28% Similarity=0.459 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q psy12548 79 YPRWSVYFTLPNAIFFYYLFSDFYN 103 (151)
Q Consensus 79 ~~~~~~~~~~~~~~s~l~LF~~Fy~ 103 (151)
..+..++++++..+..-+||.++|.
T Consensus 12 LNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 12 LNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888899999999885
No 2
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.49 E-value=66 Score=22.51 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy12548 19 FIGTINSFVHVIMYTYY 35 (151)
Q Consensus 19 ~~~~lNs~VHviMY~YY 35 (151)
+...+|+.++|+.|.+.
T Consensus 293 ~l~~~ns~iNPiIY~~~ 309 (348)
T d1u19a_ 293 FFAKTSAVYNPVIYIMM 309 (348)
T ss_dssp HHGGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46679999999998764
No 3
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=6.41 E-value=1.8e+02 Score=22.81 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=17.8
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHH
Q psy12548 13 PGGHGTFIGTINSFVHVIMYTYYALA 38 (151)
Q Consensus 13 ~~g~~~~~~~lNs~VHviMY~YY~ls 38 (151)
|+|+ ..-+++||++|.||..|=.+.
T Consensus 303 PSG~-p~Tsi~NSi~N~i~i~~a~~~ 327 (497)
T d1khva_ 303 PSGM-PFTSVINSICHWLLWSAAVYK 327 (497)
T ss_dssp CTTS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-ceeehhhhHHHHHHHHHHHHH
Confidence 5664 458899999999876664433
No 4
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=5.41 E-value=2.1e+02 Score=22.01 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=20.0
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhc
Q psy12548 13 PGGHGTFIGTINSFVHVIMYTYYALAAL 40 (151)
Q Consensus 13 ~~g~~~~~~~lNs~VHviMY~YY~lsa~ 40 (151)
|+|+ ..-+.+||++|.++..|=++...
T Consensus 286 PSG~-p~Tsi~NSi~N~i~i~~a~~~~~ 312 (460)
T d1xr5a_ 286 PSGC-SGTSIFNSMINNIIIRTLILDAY 312 (460)
T ss_dssp CTTS-SSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC-CeeeehhhHHHHHHHHHHHHHHc
Confidence 5663 45899999999998777665543
No 5
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=5.24 E-value=2.5e+02 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=18.5
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy12548 12 YPGGHGTFIGTINSFVHVIMYTYYALAA 39 (151)
Q Consensus 12 ~~~g~~~~~~~lNs~VHviMY~YY~lsa 39 (151)
.|+|+ ..-+++||++|.++..|=++..
T Consensus 286 lPSG~-~~T~iiNSi~N~i~i~~a~~~~ 312 (461)
T d1ra6a_ 286 MPSGC-SGTSIFNSMINNLIIRTLLLKT 312 (461)
T ss_dssp CCTBS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CeeEeehhHHHHHHHHHHHHHh
Confidence 35664 4589999999998755444443
No 6
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=4.86 E-value=1.1e+02 Score=17.09 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=10.9
Q ss_pred hhhhhhhhhhhhhh
Q psy12548 52 KYITTLQLLQFCIA 65 (151)
Q Consensus 52 ~~IT~lQivQF~i~ 65 (151)
..||-+|-+|.+.-
T Consensus 33 eqitfmqalqllle 46 (54)
T d1pd3a_ 33 EQITFMQALQLLLE 46 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999998653
No 7
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.73 E-value=1.3e+02 Score=15.46 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=8.2
Q ss_pred hhhhhhhhhhhhh
Q psy12548 49 WWKKYITTLQLLQ 61 (151)
Q Consensus 49 ~wK~~IT~lQivQ 61 (151)
++--.||.||.+|
T Consensus 22 fFlGai~aMqfiq 34 (35)
T d2axtf1 22 FFLGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hhHhHHHHHHHhh
Confidence 3445677777665
No 8
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=4.51 E-value=2.9e+02 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=18.7
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q psy12548 13 PGGHGTFIGTINSFVHVIMYTYYALAALG 41 (151)
Q Consensus 13 ~~g~~~~~~~lNs~VHviMY~YY~lsa~g 41 (151)
|+|+ ..-+++||++|.|...|=++...+
T Consensus 294 PSG~-p~Tsi~NSi~N~i~~~~a~~~~~~ 321 (502)
T d1sh0a_ 294 PSGV-PCTSQWNSIAHWLLTLCALSEVTN 321 (502)
T ss_dssp CTTS-TTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-ceeeeehhHHHHHHHHHHHHHhhC
Confidence 5664 458899999998776554444433
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.27 E-value=3.5e+02 Score=19.42 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=36.4
Q ss_pred hhhhhhhhhhhhhhhhhheeeee------c-------ccCCCC---hHH--HHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy12548 51 KKYITTLQLLQFCIAFIHSSQLL------F-------TDCGYP---RWS--VYFTLPNAIFFYYLFSDFYNKAYGSST 110 (151)
Q Consensus 51 K~~IT~lQivQF~i~~~~~~~~~------~-------~~C~~~---~~~--~~~~~~~~~s~l~LF~~Fy~~sY~k~~ 110 (151)
...+..+=++|.+.|++-..+.. + .|-++. +.. ....+...+.++=++..+|..+|.+++
T Consensus 33 G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pr 110 (261)
T d3cx5c2 33 GSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPR 110 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccccCcc
Confidence 57777778889998876433210 0 011111 111 123455667788889999999997764
No 10
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.17 E-value=2.7e+02 Score=13.60 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q psy12548 88 LPNAIFFYYLF 98 (151)
Q Consensus 88 ~~~~~s~l~LF 98 (151)
...++.|+.||
T Consensus 5 avfyivfialf 15 (32)
T d2e74e1 5 AVFYIVFIALF 15 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred eeHHHHHHHHH
Confidence 34445555555
Done!