RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12548
         (151 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score =  124 bits (313), Expect = 4e-36
 Identities = 53/119 (44%), Positives = 67/119 (56%), Gaps = 6/119 (5%)

Query: 1   MPMVSWGAAKYYPGGHGTFIGTINSFVHVIMYTYYALAALGDQWQKYLWWKKYITTLQLL 60
           M + SW   KY PGGH  FI  +NSFVHVIMY YY LAALG +    +WWKKYIT LQ++
Sbjct: 127 MLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQII 185

Query: 61  QFCIAFIHSSQLLFT----DCGYPRW-SVYFTLPNAIFFYYLFSDFYNKAYGSSTPKGK 114
           QF +   H    L+      CG P   +V   L   + + +LF +FY K+Y     K K
Sbjct: 186 QFVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKKKKK 244


>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
          Length = 272

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 14/107 (13%)

Query: 12  YPGGHGTFI--GTINSFVHVIMYTYYALAALGDQWQKYLW-WKKYITTLQLLQFCIAFIH 68
           Y  G   +I    +N FVH IMY Y+AL+  G  ++K +  +  YIT LQ+ Q       
Sbjct: 158 YQQGSSIWICAAAMNYFVHSIMYFYFALSEAG--FKKLVKPFAMYITLLQITQMVGGLFV 215

Query: 69  SSQLLFTDC--GYPRWSVYFTLPNA-------IFFYYLFSDFYNKAY 106
           S  ++      G P+     T+  A       IF +YLFS+ + K Y
Sbjct: 216 SGYVIVQKLTKGDPKGCSGTTMATARGQLMIYIFNFYLFSEMFVKGY 262


>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
          Length = 646

 Score = 30.4 bits (68), Expect = 0.37
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 24 NSFVHVIMYTYYALAALGDQWQKYLWWKKY 53
          +SFV  ++  +Y     G ++ K+++WK+Y
Sbjct: 44 DSFVKSVLDVFYRFMLFGKRFGKFIFWKQY 73


>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
          Length = 987

 Score = 27.2 bits (60), Expect = 4.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 118 GKEVANGVPNGKAQMNGHNGVALSNGKMETAKT 150
           GKE AN V + K    G   V +  G+M   + 
Sbjct: 463 GKEAANEVEDAKDGDKGQPLVPVKPGEMVRTEF 495


>gnl|CDD|219130 pfam06674, DUF1176, Protein of unknown function (DUF1176).  This
           family consists of several hypothetical bacterial
           proteins of around 340 residues in length. Members of
           this family contain six highly conserved cysteine
           residues. The function of this family is unknown.
          Length = 338

 Score = 26.6 bits (59), Expect = 5.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 37  LAALGDQWQKYLWWKKYITTLQLLQFCIAFIHSSQLLFTDCGYPRWSV 84
           L ALG  WQ     +  +T  Q+     A  + S++   D    RW++
Sbjct: 83  LGALGAAWQAATDNELTLTGAQVTALLQALRNGSKISLKDGAGDRWTL 130


>gnl|CDD|236742 PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional.
          Length = 191

 Score = 26.1 bits (58), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 98  FSDFYNKAYGSSTPKGKGKDGKEVANGVPNGK 129
           FSD Y+KA+G+   K  G D + V    P  +
Sbjct: 126 FSDLYSKAFGNCQ-KASGDDNRSVECKAPGSQ 156


>gnl|CDD|201894 pfam01630, Glyco_hydro_56, Hyaluronidase. 
          Length = 339

 Score = 26.2 bits (58), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 89  PNAIFFYYLFSDFYNKAYGSSTPKG 113
           PNA++ YYLF D YN  Y      G
Sbjct: 176 PNALWGYYLFPDCYNHDYNQPNYTG 200


>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
           Kinase, Mitogen-Activated Protein Kinase 15.
           Serine/Threonine Kinases (STKs), Mitogen-Activated
           Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The MAPK15 subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. MAPKs are
           important mediators of cellular responses to
           extracellular signals. Human MAPK15 is also called
           Extracellular signal Regulated Kinase 8 (ERK8) while the
           rat protein is called ERK7. ERK7 and ERK8 display both
           similar and different biochemical properties. They
           autophosphorylate and activate themselves and do not
           require upstream activating kinases. ERK7 is
           constitutively active and is not affected by
           extracellular stimuli whereas ERK8 shows low basal
           activity and is activated by DNA-damaging agents. ERK7
           and ERK8 also have different substrate profiles. Genome
           analysis shows that they are orthologs with similar gene
           structures. ERK7 and ERK 8 may be involved in the
           signaling of some nuclear receptor transcription
           factors. ERK7 regulates hormone-dependent degradation of
           estrogen receptor alpha while ERK8 down-regulates the
           transcriptional co-activation androgen and
           glucocorticoid receptors.
          Length = 337

 Score = 26.0 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 51  KKYITTLQLLQFCIAFIHSSQLLFTD 76
           K+YI   QLL+  + +IHS  ++  D
Sbjct: 109 KRYIM-YQLLK-ALKYIHSGNVIHRD 132


>gnl|CDD|227148 COG4811, COG4811, Predicted membrane protein [Function unknown].
          Length = 152

 Score = 25.4 bits (56), Expect = 9.0
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 19  FIGTINSFVHVIMYTYYALAALGDQWQKYLWWKKYITTLQLLQFCIAFIHSSQLLFTDCG 78
           F+G I   V +I        AL   W         ++ L LL F I FI   +++F + G
Sbjct: 50  FVGLI---VILIYNNVTNHGALITTW--------LLSALALLGFYIFFIRVPKIIFKEKG 98

Query: 79  YPRWSVYF 86
           +   +V+ 
Sbjct: 99  FFFANVFI 106


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,875,850
Number of extensions: 703138
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 31
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)