RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12548
         (151 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.30
 Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 24/113 (21%)

Query: 36  ALA-ALGDQWQKYLWWKKYITTLQLLQFCIAFIHSSQLLFTDCGYPRWSVYFTLPNAIFF 94
           A+A A  D W+ +         + +L F I      +       YP      +LP +I  
Sbjct: 280 AVAIAETDSWESFF--VSVRKAITVL-FFIGV-RCYEA------YPN----TSLPPSIL- 324

Query: 95  YYLFSDFYNKAYGSSTP----KGKGKDGKEVANGVPNGKAQMNGHNGVALSNG 143
                D      G  +P        ++  +      N          ++L NG
Sbjct: 325 ----EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373


>4a34_A RBSD/FUCU transport protein family protein; isomerase; HET: FUL;
          2.50A {Streptococcus pneumoniae}
          Length = 147

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 51 KKYITTL---QLLQFCIAFIHSSQLLFTDCGYPRWSV 84
           K+I       LL+  +   H  +++  D  YP  S 
Sbjct: 2  LKHIPKNISPDLLKTLMEMGHGDEIVLADANYPSASC 38


>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
           N-acetylglucosamine; 1.85A {Bacteroides
           thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
           2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
           2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
           2wzi_A* 2j4g_A*
          Length = 716

 Score = 26.4 bits (57), Expect = 5.3
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 32  YTYYALAALGDQWQKYLWWKKYITTLQLLQFC--IAFIHSSQLLFTDCGYPRWSVYFTLP 89
              Y      D +     W+      +  Q    +A  + +++ F    +P   + +   
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNKE 217

Query: 90  NAIFFYYLFSDFYN 103
           +       F   Y 
Sbjct: 218 DRDLLLAKFEKMYQ 231


>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
          {Encephalitozoon cuniculi} PDB: 2uy1_B
          Length = 493

 Score = 26.0 bits (56), Expect = 7.2
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 18 TFIGTINSFVHVIMYTY-YALAALGDQWQKYLWWKKYI 54
           ++  ++     +   Y + L    + W  Y  +K+YI
Sbjct: 55 EYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92


>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain,
           protein-inhibitor complex,
           oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A
           {Sus scrofa}
          Length = 573

 Score = 25.5 bits (55), Expect = 8.9
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 18/94 (19%)

Query: 23  INSFVHVIMYTYYALAALGDQW------------------QKYLWWKKYITTLQLLQFCI 64
           I+ +V  I+  +Y       +                   Q   +     +  QL  F  
Sbjct: 382 ISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDRGFPVSLQSKEQLCHFVT 441

Query: 65  AFIHSSQLLFTDCGYPRWSVYFTLPNAIFFYYLF 98
             I +     +     +   Y  +PNA     L 
Sbjct: 442 MCIFTCTGQHSSNHLGQLDWYTWVPNAPCTMRLP 475


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,491,913
Number of extensions: 136837
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 10
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)