RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12548
         (151 letters)



>d2ob5a1 c.133.1.1 (A:1-147) Hypothetical protein Atu2016
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 147

 Score = 25.6 bits (56), Expect = 2.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 58 QLLQFCIAFIHSSQLLFTDCGYPRWSV 84
           +L    A  H   L+ +D  +P  SV
Sbjct: 12 DVLHALRAMGHGDTLVISDTNFPSDSV 38


>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028)
           {Thermus thermophilus [TaxId: 274]}
          Length = 180

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 5/71 (7%), Positives = 15/71 (21%), Gaps = 5/71 (7%)

Query: 86  FTLPNAIFFYYLFSDF-----YNKAYGSSTPKGKGKDGKEVANGVPNGKAQMNGHNGVAL 140
             L    F ++L  D+       +       +        +   +     +++       
Sbjct: 14  LRLDEERFRFWLQQDYPFVEALYRYQVGLLLEAPQAHRAPLVQALMATVEELDWLLLQGA 73

Query: 141 SNGKMETAKTK 151
           S          
Sbjct: 74  SPSAPVHPVRA 84


>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
           10760]}
          Length = 882

 Score = 25.1 bits (54), Expect = 4.2
 Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 3/44 (6%)

Query: 25  SFVHVIMYTYYALAALGDQWQKYLWWKKYITTLQLLQFCIAFIH 68
            F+        A A       +  WW +  +    L FC  +  
Sbjct: 479 KFIEENHENIMACA---KSPLENTWWAEQDSPFCFLAFCFEYAG 519


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
           {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 24.9 bits (54), Expect = 5.5
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 18/87 (20%)

Query: 23  INSFVHVIMYTYYA-----------------LAALGDQWQK-YLWWKKYITTLQLLQFCI 64
           I ++V   +  YYA                     G    K   WW K  T   L++ C+
Sbjct: 472 IKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCL 531

Query: 65  AFIHSSQLLFTDCGYPRWSVYFTLPNA 91
             I  +  L     + ++     + N 
Sbjct: 532 IIIWIASALHAAVNFGQYPYGGLIMNR 558


>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW
           {Streptomyces caeruleus [TaxId: 195949]}
          Length = 190

 Score = 23.6 bits (50), Expect = 9.8
 Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 2/76 (2%)

Query: 31  MYTYYALAALGDQWQKYLWWKKYITTLQLLQFCIAFIHSSQLLFTDCGYPRWSVYFTLPN 90
               Y     G  +   +  +    T    +       S + ++   G      +  + +
Sbjct: 69  GQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHG--FCAISD 126

Query: 91  AIFFYYLFSDFYNKAY 106
                YL S  Y+ A 
Sbjct: 127 EATLCYLSSGTYDPAT 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,523
Number of extensions: 28625
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 8
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)