BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12549
(336 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/276 (76%), Positives = 237/276 (85%), Gaps = 4/276 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD ++ +PIRIMWSQRDPSLR+SGVGNVFIKNLD++I
Sbjct: 44 GYAYVNFQQP--ADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAI 101
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKVA DE+GNSKGYGFVHFETEEAAN SI+KVNGMLLN K V+
Sbjct: 102 DNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVY 161
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VGKFIPRKEREKELGEKAKLFTNVY+KNF EDF+DEKLKE FEPYG ITSY+VM+ DGK
Sbjct: 162 VGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGK 221
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEV-DGKILYVGRAQKKAERTQELKRRFEMLKIERL 300
S+GFGFVA+E+ E AE AVQA NGK++ +GK LYV RAQKKAER QELKR+FE LK +R
Sbjct: 222 SKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRH 281
Query: 301 NRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
GVNLYVKNLDD+IDD+RLR F+P+G ITSAK
Sbjct: 282 ESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAK 317
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 111/193 (57%), Gaps = 12/193 (6%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV++KN + D++ + + F +G I S KV E G SKG+GFV FET EAA +++ +
Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 172 NGM-LLNSKIVFVGKFIPRKEREKELGEK----------AKLFTNVYIKNFGEDFNDEKL 220
NG + K ++V + + ER++EL K + N+Y+KN + +D++L
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 221 KEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279
+ F PYG ITS +VM ++ G+S+GFGFV + + A AV NG+ V K LYV AQ
Sbjct: 304 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 280 KKAERTQELKRRF 292
+K ER L ++
Sbjct: 364 RKEERKAHLASQY 376
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 126/229 (55%), Gaps = 18/229 (7%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + ++ ++D FS+ G +LS +V +D S GY +V+F+ A +++
Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N L+ +K + I +R+ L NV+IKN +++ + + F +G
Sbjct: 61 DTMNFDLVRNKPI----RIMWSQRDPSLRRSG--VGNVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 229 TITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
I S +V ++ G S+G+GFV +E+ E A ++ NG ++GK +YVG+ + ER +E
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKE 174
Query: 288 LKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
L + ++ N+YVKN + DDE+L++ F P+G ITS K
Sbjct: 175 LGEKAKLF----------TNVYVKNFTEDFDDEKLKEFFEPYGKITSYK 213
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
N+++KNLD +ID+ + FS +G+I S KV DE+G SKG+GFV F A ++ ++
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEK-AKLFTNVYIKNFGEDFNDEKLKEMFEP 226
NG ++ SK ++V ++ER+ L + + T + ++ G+ + F P
Sbjct: 348 NGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVP 403
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/275 (72%), Positives = 230/275 (83%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE LKE+F +G S +VM + +GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GKI++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 122/191 (63%), Gaps = 10/191 (5%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV+IKN + +D++++ + FS FG LS KV +D G SKG+GFV +E E ANK++E++
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDFNDEKLK 221
NG ++ KI+FVG+ + ER+ EL K + N+YIKN + +DEKL+
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+ F P+G+ITS +VM DG+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Query: 282 AERTQELKRRF 292
ER L ++
Sbjct: 372 EERKAHLTNQY 382
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 122/228 (53%), Gaps = 17/228 (7%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPI----RIMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A+KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + N+Y+KN + +DDE L++ F+ FG S K
Sbjct: 184 GAKAKEF----------TNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/275 (72%), Positives = 228/275 (82%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KGRP+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++I+K+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFG+D NDE+LKEMF YG S +VM +D GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGK+++GK ++VGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAK 324
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 16/232 (6%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDT 130
ERA+D MN L R + + +R+ L R NV+IKN ++++ + +
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
F +G LS KV D+ G SKG+GFV FE E A K+++++NG +N K +FVG+ +
Sbjct: 211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV 270
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG 330
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 126/236 (53%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ + V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPV----RIMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A+ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN D ++DERL++ F +G S K
Sbjct: 176 RKEREAELGARAKEF----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVK 221
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/275 (71%), Positives = 229/275 (83%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LKE+F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDT 130
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + +
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
F FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ +
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V + +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIM----WSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL++ F FG S K
Sbjct: 176 RKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/275 (71%), Positives = 229/275 (83%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LKE+F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDT 130
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + +
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
F FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ +
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V + +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIM----WSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL++ F FG S K
Sbjct: 176 RKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/275 (71%), Positives = 229/275 (83%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDT 130
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
F FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ +
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 124/236 (52%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V + +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIM----WSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/275 (71%), Positives = 229/275 (83%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDT 130
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
F FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ +
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 125/236 (52%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V + +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIM----WSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/275 (71%), Positives = 229/275 (83%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDT 130
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
F FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ +
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 125/236 (52%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V + +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIM----WSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/275 (71%), Positives = 228/275 (82%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++I+K+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LKE F YG S +VM +D GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV++E E A+KAV NGK+++GK ++VGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEFTPFG+ITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAK 324
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDT 130
ERA+D MN L R + + +R+ L R NV+IKN + +D++ + +
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
F +G+ LS KV D+ G S+G+GFV FE E A K+++ +NG LN K +FVG+ +
Sbjct: 211 FGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV 270
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL K + N+Y+KN + +DE+L++ F P+G+ITS +VM G
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGG 330
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 125/236 (52%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPV----RIMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A+ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL++ F +G S K
Sbjct: 176 RKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKEWFGQYGAALSVK 221
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/275 (68%), Positives = 225/275 (81%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KGRPIRIMWSQRDP LRKSGVGNVFIKNLD+SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G S+GYGFVHFET+EAAN++I+ +NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG F R+ERE E G K FTNVYIKNFGED +D++L+E+F +G S +VM +D G+
Sbjct: 170 VGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGR 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV Y + E A+KAV NGKEV+G+++YVGRAQK+ ER ELKR+FE +K ER+N
Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERIN 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDD+RLRKEF+P+GTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAK 324
Score = 157 bits (398), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 134/230 (58%), Gaps = 16/230 (6%)
Query: 79 RALDTMNFDALKGRPIRI--MWSQRDPSLRKSG----VGNVFIKNLDKSIDNKAMYDTFS 132
RA+ TMN L R + + S+R+ L NV+IKN + +D+K + + FS
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ LS KV D+ G S+G+GFV++ E A K++ ++NG +N ++++VG+ R ER
Sbjct: 213 AFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +D++L++ F PYGTITS +VM G S
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 20/137 (14%)
Query: 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG--KSRGFGFVAYESPEFAEKAV 260
++Y+ + D + L E F P G I S RV + +S G+ ++ ++ P AE+A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 261 QAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDD 319
N + + G+ + + +Q+ R GV N+++KNLD+SID+
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGL-----------------RKSGVGNVFIKNLDESIDN 112
Query: 320 ERLRKEFTPFGTITSAK 336
+ L F+ FG I S K
Sbjct: 113 KALYDTFSAFGNILSCK 129
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/262 (70%), Positives = 219/262 (83%), Gaps = 2/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERALDTMNF+ +KGRPIRIMWSQRDP LRKSGVGNVFIKNLD+SIDNKA+YDTFSAFG
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG 123
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKV DE G S+GYGFVHFET EAAN++I+ +NGMLLN + VFVG F R+ERE E
Sbjct: 124 NILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
G K FTNVYIKNFGED +D++L+E+F +G S +VM +D G+SRGFGFV Y + E
Sbjct: 183 YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHE 242
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+KAV NGKEV+G+++YVGRAQK+ ER ELKR+FE +K ER+NRYQGVNLYVKNLD
Sbjct: 243 EAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLD 302
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDD+RLRKEF P+GTITSAK
Sbjct: 303 DGIDDDRLRKEFLPYGTITSAK 324
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 134/230 (58%), Gaps = 16/230 (6%)
Query: 79 RALDTMNFDALKGRPIRI--MWSQRDPSLRKSG----VGNVFIKNLDKSIDNKAMYDTFS 132
RA+ TMN L R + + S+R+ L NV+IKN + +D+K + + FS
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ LS KV D+ G S+G+GFV++ E A K++ ++NG +N ++++VG+ R ER
Sbjct: 213 AFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +D++L++ F PYGTITS +VM G S
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG--KSRGFGFVAYESPEFAEKAV 260
++YI + D + L E F P G I S RV + +S + ++ ++ P AE+A+
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 261 QAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDD 319
N + + G+ + + +Q+ R GV N+++KNLD+SID+
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGL-----------------RKSGVGNVFIKNLDESIDN 112
Query: 320 ERLRKEFTPFGTITSAK 336
+ L F+ FG I S K
Sbjct: 113 KALYDTFSAFGNILSCK 129
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/275 (68%), Positives = 222/275 (80%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KGRPIRIMWSQRDP LRKSGVGNVFIKNLD SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG ILSCKV DE G S+GYGFVHFET+EAAN++I+ +NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGK 241
VG F R+ERE E G K FTNVYIKNFGED +D++LKE+F +G S +VM +N G+
Sbjct: 170 VGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGR 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV Y + E A+KAV NGKEV+G+++YVGRAQK+ ER ELKR+FE +K ER+N
Sbjct: 230 SRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERIN 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDD+RLRKEF+P+GTITS K
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTK 324
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 133/230 (57%), Gaps = 16/230 (6%)
Query: 79 RALDTMNFDALKGRPIRI--MWSQRDPSLRKSG----VGNVFIKNLDKSIDNKAMYDTFS 132
RA+ TMN L R + + S+R+ L NV+IKN + +D+K + + FS
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ LS KV D G S+G+GFV++ E A K++ ++NG +N ++V+VG+ R ER
Sbjct: 213 AFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +D++L++ F PYGTITS +VM G S
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 20/137 (14%)
Query: 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG--KSRGFGFVAYESPEFAEKAV 260
++YI + D + L E F P G I S RV + +S G+ ++ ++ P AE+A+
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 261 QAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDD 319
N + + G+ + + +Q+ R GV N+++KNLDDSID+
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGL-----------------RKSGVGNVFIKNLDDSIDN 112
Query: 320 ERLRKEFTPFGTITSAK 336
+ L F+ FG I S K
Sbjct: 113 KALYDTFSAFGDILSCK 129
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/262 (69%), Positives = 217/262 (82%), Gaps = 2/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E ALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+F+KNLDKSI+NKA+YDT SAFG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSC V DE G SKGYGFVHFET EAA ++I+K+NGMLLN + VFVG+F RKERE E
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
LG +AK F NVYIKNFGED +DE+LK++F +G S +VM ++ GKS+GFGFV++E E
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+KAV NGKE++GK +YVGRAQKK ER ELKR FE +K +R+ RYQ VNLYVKNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDDERLRK F+PFGTITSAK
Sbjct: 303 DGIDDERLRKAFSPFGTITSAK 324
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 133/231 (57%), Gaps = 16/231 (6%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA+ MN L GR + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELG---EKAKL-------FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL E+ K N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 122/236 (51%), Gaps = 17/236 (7%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS ++++ +L + +Y+ FS G ILS ++ +D S Y +V+F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
+ A +++ +N ++ K V I +R+ L + N+++KN + N++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPV----RIMWSQRDPSLRKSG--VGNIFVKNLDKSINNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ +G I S V+ ++ S+G+GFV +E+ E AE+A++ NG ++G+ ++VG+ +
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/275 (64%), Positives = 215/275 (78%), Gaps = 4/275 (1%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ LKG+PIRIMWSQRDP LRKSGVGN+FIKNL+ SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFS FG+ILSCKVA DE G S+G+GFVHFET EAA ++I +NGMLLN + VF
Sbjct: 111 DNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGK 241
VG F R+ERE ELG +A FTN+Y+KN D +++ L+++F +G + S +VM +N G
Sbjct: 170 VGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGH 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SR FGFV +E E A+KAV NGKEV G++LY GRAQK+ ER ELKRRFE +K +RL
Sbjct: 230 SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLR 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSIDD++LRKEF+P+G ITSAK
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 136/235 (57%), Gaps = 22/235 (9%)
Query: 77 TERALDTMNFDALKGRPIRI--MWSQRDPSLRKSGVG-------NVFIKNLDKSIDNKAM 127
++A++TMN L R + + S+R+ R++ +G N+++KNL +D + +
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGL 207
Query: 128 YDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
D FS FG +LS KV +D G+S+ +GFV+FE E A K++ +NG ++ ++++ G+
Sbjct: 208 QDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQ 267
Query: 188 PRKEREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237
R ER+ EL + + N+Y+KN + +D+KL++ F PYG ITS +VM
Sbjct: 268 KRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT 327
Query: 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
G S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 120/228 (52%), Gaps = 17/228 (7%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N +L + + + +++ G + N++IKN + +++ L + F +G
Sbjct: 70 DTMNFEMLKGQPIRI------MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V ++ SRGFGFV +E+ E A++A+ NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + N+YVKNL +D++ L+ F+ FG + S K
Sbjct: 184 GAR----------ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVK 221
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 202/262 (77%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+AL+ +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 101 DGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG 160
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG IP+KER +
Sbjct: 161 NILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSK 220
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
E FTN+Y+KN D DE +E+FE +G ITS + +D GKSRGFGFV Y E
Sbjct: 221 FEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHE 280
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A AV N E G+ LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLY+KNL+
Sbjct: 281 AAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLN 340
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D +DDE+LR FTPFGTITSAK
Sbjct: 341 DDVDDEKLRDMFTPFGTITSAK 362
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 87/140 (62%), Gaps = 10/140 (7%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N+++KN+D + ++ + F G I S +A+D+QG S+G+GFV++ EAA
Sbjct: 225 KANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAV 284
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG---EKAKL-------FTNVYIKNFGEDFN 216
+++ +N + + ++VG+ + ERE+EL E A+L N+YIKN +D +
Sbjct: 285 AVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVD 344
Query: 217 DEKLKEMFEPYGTITSYRVM 236
DEKL++MF P+GTITS +V+
Sbjct: 345 DEKLRDMFTPFGTITSAKVI 364
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 240 GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
GKS+GFGFV + +P+ A KAV N K ++GK LYV AQ+K R +L+
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLE 471
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F G + S RV + +S G+ +V Y S E EKA++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + GK + +Q R L++ QG N+++KNLD +ID++
Sbjct: 108 ELNYTVIKGKPCRIMWSQ----RDPALRKTG-----------QG-NVFIKNLDHAIDNKA 151
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 152 LHDTFAAFGNILSCK 166
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 148 GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184
G SKG+GFV F + A K++ ++N ++ K ++V
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVA 458
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 208/262 (79%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 101 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 160
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 161 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 220
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
E FTNVYIKN ++ ++E+ ++MFE +G ITS + + +GKSRGFGFV Y + +
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ AV N KEV G+ LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 340
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDDE+LR+ F P+GTITSAK
Sbjct: 341 DDIDDEKLREMFAPYGTITSAK 362
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 124/245 (50%), Gaps = 62/245 (25%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV+IKNLD+ I + F FG I S +++D++G S+G+GFV++ T ++A
Sbjct: 225 KANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQA 284
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
+++++N + + ++VG+ + ERE+EL EKA + N+Y+KN +D +
Sbjct: 285 AVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDID 344
Query: 217 DEKLKEMFEPYGTITSYRVMNND------------------------------------- 239
DEKL+EMF PYGTITS +VM +
Sbjct: 345 DEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESG 404
Query: 240 ---------------GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284
GKS+GFGFV + SP+ A KAV N + ++GK LYV AQ+K R
Sbjct: 405 DDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVR 464
Query: 285 TQELK 289
+L+
Sbjct: 465 RSQLE 469
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +Y+ FS+ G + S +V +D S GY +V++ +++E
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N L+ K + + R ++ G+ NV+IKN +++ L + F +G I
Sbjct: 109 LNYTLIKGKPCRI-MWSQRDPALRKTGQ-----GNVFIKNLDAAIDNKALHDTFAAFGNI 162
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ G S+G+GFV YE+ E A A++ NG ++ K ++VG K +R +
Sbjct: 163 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR----Q 218
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+FE +K N+Y+KNLD I +E R+ F FG ITSA
Sbjct: 219 SKFEEMKANF------TNVYIKNLDQEISEEEFRQMFEKFGEITSA 258
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 208/262 (79%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
E FTNVYIKN ++ DE+ ++MFE +G ITS + + +GKSRGFGFV + + +
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ AV N KE+ G+ LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D +DDE+LR+ F+PFGTITSAK
Sbjct: 345 DDVDDEKLRELFSPFGTITSAK 366
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV+IKN+D+ + ++ F FG I S +++D++G S+G+GFV+F T ++A
Sbjct: 229 KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQA 288
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
+++++N + + ++VG+ + ERE+EL EKA + N+Y+KN +D +
Sbjct: 289 AVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVD 348
Query: 217 DEKLKEMFEPYGTITSYRVMNND------------------------------------- 239
DEKL+E+F P+GTITS +VM +
Sbjct: 349 DEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESE 408
Query: 240 -----------GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
GKS+GFGFV + SP+ A KAV N + V+GK LYV AQ+K R +L
Sbjct: 409 EEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 468
Query: 289 K 289
+
Sbjct: 469 E 469
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
PS + ++++ LD S+ +Y+ FS+ G + S +V +D S GY +V++
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
+++E +N L+ K I +R+ L + + NV+IKN +++ L
Sbjct: 104 ADGERALEDLNYTLIKGKPC----RIMWSQRDPALRKTGQ--GNVFIKNLDAAIDNKALH 157
Query: 222 EMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V ++ G S+G+GFV YE+ E A A++ NG ++ K ++VG
Sbjct: 158 DTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 217
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
K +R + +FE +K N+Y+KN+D + DE RK F FG ITSA
Sbjct: 218 KKDR----QSKFEEMKANF------TNVYIKNIDQEVTDEEFRKMFEKFGEITSA 262
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 337 bits (865), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 208/262 (79%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
E FTNVYIKN ++ DE+ ++MFE +G ITS + + +GKSRGFGFV + + +
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ AV N KE+ G+ LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D +DDE+LR+ F+PFGTITSAK
Sbjct: 345 DDVDDEKLRELFSPFGTITSAK 366
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 56/239 (23%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV+IKN+D+ + ++ F FG I S +++D++G S+G+GFV+F T ++A
Sbjct: 229 KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQA 288
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
+++++N + + ++VG+ + ERE+EL EKA + N+Y+KN +D +
Sbjct: 289 AVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVD 348
Query: 217 DEKLKEMFEPYGTITSYRVMNND------------------------------------- 239
DEKL+E+F P+GTITS +VM +
Sbjct: 349 DEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEE 408
Query: 240 ---------GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
GKS+GFGFV + SP+ A KAV N + V+GK LYV AQ+K R +L+
Sbjct: 409 AKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 467
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
PS + ++++ LD S+ +Y+ FS+ G + S +V +D S GY +V++
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
+++E +N L+ K I +R+ L + + NV+IKN +++ L
Sbjct: 104 ADGERALEDLNYTLIKGKPC----RIMWSQRDPALRKTGQ--GNVFIKNLDAAIDNKALH 157
Query: 222 EMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V ++ G S+G+GFV YE+ E A A++ NG ++ K ++VG
Sbjct: 158 DTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 217
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
K +R + +FE +K N+Y+KN+D + DE RK F FG ITSA
Sbjct: 218 KKDR----QSKFEEMKANF------TNVYIKNIDQEVTDEEFRKMFEKFGEITSA 262
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 333 bits (855), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 159/262 (60%), Positives = 206/262 (78%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 102 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 161
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
E FTNVYIKN +D +E+ +E+FE +G ITS + + +GKSRGFGFV + + E
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ AV N KE+ + LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 341
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D +DDE+LR+ F P+GTITSAK
Sbjct: 342 DDVDDEKLRELFGPYGTITSAK 363
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 18/244 (7%)
Query: 94 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKG 152
+ + S P+ + ++++ LD S+ +Y+ FS+ G + S +V +D S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 153 YGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFG 212
Y +V++ +++E +N L+ K + + R ++ G+ NV+IKN
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI-MWSQRDPALRKTGQ-----GNVFIKNLD 145
Query: 213 EDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271
+++ L + F +G I S +V ++ G S+G+GFV YE+ E A A++ NG ++ K
Sbjct: 146 SAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 205
Query: 272 ILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGT 331
++VG K +R + +FE +K N+Y+KN+D + +E R+ F FG
Sbjct: 206 KVFVGHHISKKDR----QSKFEEMKANF------TNVYIKNIDQDVTEEEFRELFEKFGE 255
Query: 332 ITSA 335
ITSA
Sbjct: 256 ITSA 259
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 240 GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
GKS+GFGFV + SP+ A KAV N + V+GK LYV AQ+K R +L+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 479
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 333 bits (853), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/262 (60%), Positives = 207/262 (79%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 107 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 166
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 167 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 226
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
E FTNVYIKN + +D++ ++MFE +G ITS + + +GKSRGFGFV + + E
Sbjct: 227 FEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 286
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ AV+ N KE+ + LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL
Sbjct: 287 SAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 346
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDDE+LR+ F P+GTITSAK
Sbjct: 347 DDIDDEKLRELFGPYGTITSAK 368
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 18/235 (7%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P+ + ++++ LD S+ +Y+ FS+ G + S +V +D S GY +V++
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
+++E +N L+ K + + R ++ G+ NV+IKN +++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI-MWSQRDPALRKTGQ-----GNVFIKNLDSAIDNKALH 159
Query: 222 EMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V ++ G S+G+GFV YE+ E A A++ NG ++ K ++VG
Sbjct: 160 DTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 219
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
K +R + +FE +K N+Y+KNLD IDD+ RK F FG ITSA
Sbjct: 220 KKDR----QSKFEEMKANF------TNVYIKNLDSEIDDDEFRKMFEKFGEITSA 264
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 240 GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
GKS+GFGFV + SP+ A KAV N + V+GK LYV AQ+K R +L+
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 481
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/263 (59%), Positives = 205/263 (77%), Gaps = 2/263 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+AL+ +N+ +KGRP RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 114 DGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 173
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET+EAA+++I+ VNGMLLN K V+VG IP+K+R+ +
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 233
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESP 253
E FTN+Y+KN + D++ + +FE YG +TS + + GKSRGFGFV + S
Sbjct: 234 FDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSH 293
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNL 313
E A KAVQ N KE G+ LYVGRAQKK ER +EL++ +E + E+ ++YQGVNLY+KNL
Sbjct: 294 EDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNL 353
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
DD +DDE+LR+ F+ FG ITSAK
Sbjct: 354 DDEVDDEKLRQLFSEFGPITSAK 376
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 120/246 (48%), Gaps = 59/246 (23%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAAN 165
K+ N+++KN++ + + F +G + S +A+D E G S+G+GFV+F + E A+
Sbjct: 238 KANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDAS 297
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKEL--------GEKAKLF--TNVYIKNFGEDF 215
K+++++N + + ++VG+ + ERE+EL EKA + N+YIKN ++
Sbjct: 298 KAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEV 357
Query: 216 NDEKLKEMFEPYGTITSYRVM-------------------------------NNDGKSR- 243
+DEKL+++F +G ITS +VM +D K
Sbjct: 358 DDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEE 417
Query: 244 ----------------GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
GFGFV + +P+ A KAV N + V+ K LYV AQ+K R +
Sbjct: 418 KEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQ 477
Query: 288 LKRRFE 293
L++ +
Sbjct: 478 LEQSIQ 483
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F G++ S RV + +S G+ +V Y + EKA++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + G+ + +Q R L++ QG N+++KNLD +ID++
Sbjct: 121 ELNYTLIKGRPCRIMWSQ----RDPALRKTG-----------QG-NVFIKNLDVAIDNKA 164
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 165 LHDTFAAFGNILSCK 179
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 332 bits (851), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 202/264 (76%), Gaps = 1/264 (0%)
Query: 74 MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
M D E+ALD +N+ +KGRP RIMWSQRDPSLRK G GNVFIKNLD +IDNKA++DTFSA
Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA 190
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG ILSCKVA DE GN+KGYGFVHF++ E+AN +IE VNGMLLN K V+VG + R+ER+
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ 250
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYR-VMNNDGKSRGFGFVAYES 252
++ FTNVYIKN + +++ ++F +G ITS V + + K RGFGFV Y +
Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKN 312
E A+KAV N KE GK LYVGRAQKK ER +EL++R+E +K+E++N+YQGVNL++KN
Sbjct: 311 HECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKN 370
Query: 313 LDDSIDDERLRKEFTPFGTITSAK 336
L D +DDERL+ EF+ FGTITSAK
Sbjct: 371 LQDEVDDERLKAEFSAFGTITSAK 394
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 11/207 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV+IKNLD I + D F FG I S + +D+ +G+GFV++ E A K
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG---EKAKL-------FTNVYIKNFGEDFN 216
+++++N K ++VG+ + ERE+EL E+ KL N++IKN ++ +
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVD 376
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
DE+LK F +GTITS ++M ++ GKS+GFGFV Y +PE A KAV N + + GK LYV
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Query: 276 GRAQKKAERTQELKRRFEMLKIERLNR 302
AQ+K R +L+ + + RL +
Sbjct: 437 ALAQRKEVRRSQLEAQIQARNQFRLQQ 463
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 18/234 (7%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
PS ++++ LD S+ +++ F++ G + S +V +D S GY +V+F
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E K+++++N L+ + + + R +++G NV+IKN +++ L
Sbjct: 132 EDGEKALDELNYTLIKGRPCRI-MWSQRDPSLRKMGTG-----NVFIKNLDPAIDNKALH 185
Query: 222 EMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V ++ G ++G+GFV ++S E A A++ NG ++ K +YVG
Sbjct: 186 DTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG---- 241
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+ RR K+E L + N+Y+KNLD I ++ F FG ITS
Sbjct: 242 -----HHVSRRERQSKVEAL-KANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 18/125 (14%)
Query: 77 TERALDTMNFDALKGRPIRIMWSQ----RDPSLRK-------------SGVGNVFIKNLD 119
++A+D +N KG+ + + +Q R+ LRK GV N+FIKNL
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQ 372
Query: 120 KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
+D++ + FSAFG+I S K+ DEQG SKG+GFV + T E ANK++ ++N +L K
Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432
Query: 180 IVFVG 184
++V
Sbjct: 433 PLYVA 437
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 331 bits (848), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 158/262 (60%), Positives = 205/262 (78%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 104 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 163
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 164 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 223
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPE 254
E FTN+YIKN D +E+ +++FE +G ITS + + +GKSRGFGFV Y + E
Sbjct: 224 FDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHE 283
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ AV + KEV + LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL
Sbjct: 284 SAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 343
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D +DDE+LR+ F P+GTITSAK
Sbjct: 344 DDVDDEKLRELFGPYGTITSAK 365
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 89/142 (62%), Gaps = 10/142 (7%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N++IKN+D + + F FG I S +++D +G S+G+GFV++ T E+A
Sbjct: 228 KANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQA 287
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
++++++ + ++ ++VG+ + ERE+EL EKA + N+Y+KN +D +
Sbjct: 288 AVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVD 347
Query: 217 DEKLKEMFEPYGTITSYRVMNN 238
DEKL+E+F PYGTITS +VM +
Sbjct: 348 DEKLRELFGPYGTITSAKVMRD 369
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +Y+ FS+ G + S +V +D S GY +V++ +++E
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N L+ K + + R ++ G+ NV+IKN +++ L + F +G I
Sbjct: 112 LNYTLIKGKPCRI-MWSQRDPALRKTGQ-----GNVFIKNLDSAIDNKALHDTFAAFGNI 165
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ G S+G+GFV YE+ E A A++ NG ++ K ++VG K +R +
Sbjct: 166 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR----Q 221
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+F+ +K N+Y+KN+D + +E RK F FG ITSA
Sbjct: 222 SKFDEMKANF------TNIYIKNIDPDVTEEEFRKIFEQFGEITSA 261
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 240 GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
GKS+GFGFV + SP+ A KAV N + V+GK LYV AQ+K R +L+
Sbjct: 425 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 474
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 53/125 (42%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQ--------------------------- 144
N+++KNL +D++ + + F +G+I S KV +
Sbjct: 336 NLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKE 395
Query: 145 -------------DEQ-------------GNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178
DE+ G SKG+GFV F + + A+K++ ++N ++N
Sbjct: 396 DEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNG 455
Query: 179 KIVFV 183
K ++V
Sbjct: 456 KPLYV 460
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 331 bits (848), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 152/262 (58%), Positives = 205/262 (78%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+AL+ +N+ +KGRP RIMWSQRDP+LRK+G GN+FIKNLD +IDNKA++DTF+AFG
Sbjct: 113 DGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG 172
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET+EAA+++I+ VNGMLLN K V+VG IP+K+R+ +
Sbjct: 173 NILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 232
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
E FTNVY+KN + DE+ +E+F +G +TS + + +GKSRGFGFV + + E
Sbjct: 233 FEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHE 292
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A +AV NGK+ G+ LYVGRAQKK ER +EL++ +E ++E+ N+YQGVNLY+KNL
Sbjct: 293 AAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLG 352
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D +DD++LR F+ +G ITSAK
Sbjct: 353 DDVDDDKLRAMFSEYGPITSAK 374
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 129/248 (52%), Gaps = 52/248 (20%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV++KN++ + ++ + F+ FG + S +A+D++G S+G+GFV+F T EAA +
Sbjct: 237 KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQ 296
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
+++++NG + ++VG+ + ERE+EL EKA + N+YIKN G+D +
Sbjct: 297 AVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVD 356
Query: 217 DEKLKEMFEPYGTITSYRVMNND------------------------------------- 239
D+KL+ MF YG ITS +VM +
Sbjct: 357 DDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKK 416
Query: 240 -----GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEM 294
GKS+GFGFV + +P+ A KAV N + VDGK LYV AQ+K R +L+ +
Sbjct: 417 GDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQA 476
Query: 295 LKIERLNR 302
R+ +
Sbjct: 477 RNQLRMQQ 484
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F G++ S RV + +S G+ +V Y + EKA++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + G+ + +Q+ L + N+++KNLD +ID++
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPA----------------LRKTGAGNIFIKNLDAAIDNKA 163
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 164 LHDTFAAFGNILSCK 178
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 330 bits (845), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 211/274 (77%), Gaps = 7/274 (2%)
Query: 69 LGQPY-----MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 123
LG Y + D ++ALDTMNFD +KG+ IR+MWSQRD LR+SG+GNVFIKNLDKSID
Sbjct: 51 LGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSID 110
Query: 124 NKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183
NK +Y+ FSAFG ILS KV D+QG SKGY FVHF+ + AA+++IE++NG LL VFV
Sbjct: 111 NKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 169
Query: 184 GKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKS 242
G+F RK+RE EL KA FTNVYIKNFG D +DE+LK++F YG S +VM ++ GKS
Sbjct: 170 GRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS 229
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNR 302
+GFGFV+++S E A+KAV+ NG++++G++++VGRAQKK ER ELK+ FE LK ER+
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRG 289
Query: 303 YQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
QGV LY+KNLDD+IDDE+LR EF+ FG+I+ K
Sbjct: 290 CQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVK 323
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 125/220 (56%), Gaps = 16/220 (7%)
Query: 77 TERALDTMNFDALKGRPIRI----MWSQRDPSLRK--SGVGNVFIKNLDKSIDNKAMYDT 130
+RA++ MN LKG + + R+ LR S NV+IKN +D++ + D
Sbjct: 150 ADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDV 209
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
FS +G LS KV D G SKG+GFV F++ EAA K++E++NG +N +++FVG+ +
Sbjct: 210 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 269
Query: 191 EREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240
ER+ EL + + +YIKN + +DEKL+ F +G+I+ +VM +G
Sbjct: 270 ERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG 329
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+S+GFG + + SPE A KA+ NG+ + K L + AQ+
Sbjct: 330 QSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 120/228 (52%), Gaps = 17/228 (7%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + ++ FS G +LS ++ +D+ S GY +V+F A K++
Sbjct: 9 MASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKAL 68
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ GK I +++ + NV+IKN + +++ L E F +G
Sbjct: 69 DTMNFDIIK------GKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +VM++D S+G+ FV +++ A++A++ NGK + G ++VGR + + +R EL
Sbjct: 123 KILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN +DDERL+ F+ +G S K
Sbjct: 183 RSKAS----------EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 220
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 329 bits (844), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 158/263 (60%), Positives = 205/263 (77%), Gaps = 2/263 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KGRP RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 108 DGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG 167
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET EAA +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESP 253
E FTNVY+KN +D +E+ +++FE +G ITS + + GKSRGFGFV + S
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNL 313
+ A AV+A N K+ G+ LYVGRAQKK ER +EL++++E +IE+ ++YQGVNLY+KNL
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNL 347
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
D IDDE+LR+ F+ +GTITSAK
Sbjct: 348 SDDIDDEKLRELFSSYGTITSAK 370
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 118/248 (47%), Gaps = 65/248 (26%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAAN 165
K+ NV++KN+D+ + D F FG I S +A+D E G S+G+GFV+F + + A
Sbjct: 232 KANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAA 291
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDF 215
++E +N + ++VG+ + ERE+EL EKA + N+YIKN +D
Sbjct: 292 AAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDI 351
Query: 216 NDEKLKEMFEPYGTITSYRVM--------------------------------------N 237
+DEKL+E+F YGTITS +VM N
Sbjct: 352 DDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAEN 411
Query: 238 NDGK----------------SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
D K S+GFGFV + SP+ A KAV N + V GK LYV AQ+K
Sbjct: 412 KDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRK 471
Query: 282 AERTQELK 289
R +L+
Sbjct: 472 DVRRSQLE 479
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F G + S RV + +S G+ +V Y + E+A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + G+ + +Q R L++ QG N+++KNLD +ID++
Sbjct: 115 DLNYTLIKGRPCRIMWSQ----RDPALRKTG-----------QG-NVFIKNLDTAIDNKA 158
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 159 LHDTFAAFGNILSCK 173
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 154/262 (58%), Positives = 206/262 (78%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+AL+ +N+ +KGRP RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 118 DGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 177
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET+EAA ++I+ VN MLLN K V+VG IP+K+R+ +
Sbjct: 178 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSK 237
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
E FTN+Y+KN + DE+ +++F YG +TS + +++GKSRGFGFV + + E
Sbjct: 238 FEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHE 297
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KAV+ NGKE G+ LYVGRAQKK ER +EL++ +E ++E+ N+YQGVNLY+KNL
Sbjct: 298 CAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLA 357
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDD++LR+ F+ +G ITSAK
Sbjct: 358 DDIDDDKLRQMFSEYGPITSAK 379
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 56/239 (23%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N+++KN+ ++ D F+ +G + S +A+D +G S+G+GFV+F T E A K
Sbjct: 242 KANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAK 301
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
++E++NG + ++VG+ + ERE+EL EKA + N+YIKN +D +
Sbjct: 302 AVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDID 361
Query: 217 DEKLKEMFEPYGTITSYRVMNND------------------------------------- 239
D+KL++MF YG ITS +VM +
Sbjct: 362 DDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKK 421
Query: 240 ---------GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
GKS+GFGFV + +P+ A KAV N + ++GK LYV AQ+K R +L+
Sbjct: 422 TEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLE 480
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F G++ S RV + +S G+ +V Y S EKA++
Sbjct: 65 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALE 124
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + G+ + +Q R L++ QG N+++KNLD +ID++
Sbjct: 125 ELNYTLIKGRPCRIMWSQ----RDPALRKTG-----------QG-NVFIKNLDVAIDNKA 168
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 169 LHDTFAAFGNILSCK 183
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 327 bits (839), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 156/260 (60%), Positives = 205/260 (78%), Gaps = 1/260 (0%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSI 137
ERALD +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG+I
Sbjct: 97 ERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 156
Query: 138 LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELG 197
LSCKVAQDE G SKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 157 LSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 216
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFA 256
E FTN+YIKN + DE+ +++FE +G ITS + +++GKSRGFGFV + + E A
Sbjct: 217 EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESA 276
Query: 257 EKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDS 316
+ AV+ N KEV + LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL D
Sbjct: 277 QAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDD 336
Query: 317 IDDERLRKEFTPFGTITSAK 336
+DD++LR+ F P+GTITSAK
Sbjct: 337 VDDDKLRELFGPYGTITSAK 356
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 62/245 (25%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N++IKN+D ++++ F FG I S +++D +G S+G+GFV+F T E+A
Sbjct: 219 KANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQA 278
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
++E++N + S+ ++VG+ + ERE+EL EKA + N+Y+KN +D +
Sbjct: 279 AVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVD 338
Query: 217 DEKLKEMFEPYGTITSYRVMNND------------------------------------- 239
D+KL+E+F PYGTITS +VM +
Sbjct: 339 DDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEK 398
Query: 240 ---------------GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284
GKS+GFGFV + SP+ A KAV N + V+GK LYV AQ+K R
Sbjct: 399 EEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 458
Query: 285 TQELK 289
+L+
Sbjct: 459 RSQLE 463
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 18/226 (7%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +Y+ FS+ G + S +V +D S GY +V++ +++++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N L+ K I +R+ L + + NV+IKN +++ L + F +G I
Sbjct: 103 LNYTLIKGKPC----RIMWSQRDPALRKTGQ--GNVFIKNLDSAIDNKALHDTFAAFGNI 156
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ G S+G+GFV YE+ E A A++ NG ++ K ++VG K +R +
Sbjct: 157 LSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR----Q 212
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+FE +K N+Y+KN+D ++DE RK F FG ITSA
Sbjct: 213 SKFEEMKANF------TNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/262 (57%), Positives = 206/262 (78%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++ +N+ ++GRP RIMWSQRDPS R+SG GN+FIKNL +IDNKA++DTFSAFG
Sbjct: 120 DGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG 179
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILS KVA D+ G SK +GFVH+ETEEAA +IE VNGMLLN + V+VGK + +K+RE +
Sbjct: 180 KILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESK 239
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMNNDGKSRGFGFVAYESPE 254
L E +TN+Y+KN + +++ +E+F P+G ITS Y + +GKS+GFGFV +E E
Sbjct: 240 LEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHE 299
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KAV+ N KE++G+ +YVGRAQKK ERT+ELK+++E +++E+L++YQGVNL+VKNLD
Sbjct: 300 AAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLD 359
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
+ ID E+L +EF PFGTITS+K
Sbjct: 360 EQIDSEKLEEEFKPFGTITSSK 381
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 126/198 (63%), Gaps = 11/198 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N+++KN+D + K + F+ FG I S + +D +G SKG+GFV+FE EAA K
Sbjct: 244 KANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAK 303
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDFN 216
++E++N +N + ++VG+ ++ER +EL ++ + N+++KN E +
Sbjct: 304 AVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQID 363
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
EKL+E F+P+GTITS +VM +D GKS+GFGFV + +PE A KA+ N + V+GK LYV
Sbjct: 364 SEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYV 423
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L+++ +
Sbjct: 424 ALAQRKDVRRSQLEQQIQ 441
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 194 KELGEKAKLFTN---VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFV 248
+E GE + + N +Y+ N+ L E+F P G + S RV + KS G+ +V
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 249 AYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNL 308
Y E EKA++ N V+G+ + +Q+ R N+
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDP----------------SARRSGDGNI 157
Query: 309 YVKNLDDSIDDERLRKEFTPFGTITSAK 336
++KNL +ID++ L F+ FG I S K
Sbjct: 158 FIKNLHPAIDNKALHDTFSAFGKILSVK 185
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 311 bits (796), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 206/262 (78%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++ +N++ ++GRP RIMWSQRDPS R+SG GN+FIKNL +IDNKA++DTFSAFG
Sbjct: 105 DGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG 164
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILSCKVA DE G SK +GFVH+ET EAA +IE VNGMLLN + VFVGK I +K+RE +
Sbjct: 165 KILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMNNDGKSRGFGFVAYESPE 254
E FTN+Y+KN ++++E +++F P+G ITS Y + DGKS+GFGFV +E E
Sbjct: 225 FEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHE 284
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KAV+ N KE++G+ +YVGRAQKK ER +ELK+++E +++E+L +YQGVNL+VKNLD
Sbjct: 285 SAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLD 344
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D+ID E+L +EF PFGTITSAK
Sbjct: 345 DTIDSEKLEEEFKPFGTITSAK 366
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 126/198 (63%), Gaps = 11/198 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N+++KN+D + ++ FS FG I S + +D+ G SKG+GFV+FE E+A K
Sbjct: 229 KANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVK 288
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDFN 216
++E++N +N + ++VG+ ++ER +EL ++ + N+++KN + +
Sbjct: 289 AVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTID 348
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
EKL+E F+P+GTITS +VM ++ GKS+GFGFV + +PE A KA+ N + ++GK LYV
Sbjct: 349 SEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L+++ +
Sbjct: 409 ALAQRKDVRRSQLEQQIQ 426
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 194 KELGEKAKLFTN---VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFV 248
+E GE + + N +Y+ N+ L E+F P G ++S RV + KS G+ +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 249 AYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNL 308
Y E EKA++ N ++G+ + +Q+ R N+
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPS----------------ARRSGDGNI 142
Query: 309 YVKNLDDSIDDERLRKEFTPFGTITSAK 336
++KNL +ID++ L F+ FG I S K
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCK 170
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 310 bits (794), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 155/264 (58%), Positives = 206/264 (78%), Gaps = 1/264 (0%)
Query: 74 MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
M D E+A++ +N+ ++GRP RIMWSQRDPS R+SG GN+FIKNL +IDNKA++DTFS
Sbjct: 103 MEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFST 162
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG ILSCKVA D+ G SK +GFVH+ET EAA +IE VNGMLLN + VFVGK I +K+RE
Sbjct: 163 FGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE 222
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMNNDGKSRGFGFVAYES 252
+ E FTN+Y+KN ++++E LK++F PYG ITS Y + +GKS+GFGFV YE
Sbjct: 223 SKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEG 282
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKN 312
E A KAV+ N KE++G+ +YVGRAQKK ER +ELK+++E ++E+L++YQGVNL++KN
Sbjct: 283 HEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKN 342
Query: 313 LDDSIDDERLRKEFTPFGTITSAK 336
LDD+ID E+L +EF PFGTITSA+
Sbjct: 343 LDDTIDSEKLEEEFKPFGTITSAR 366
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 124/198 (62%), Gaps = 11/198 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N+++KN+D + + F+ +G+I S + +D +G SKG+GFV++E EAA K
Sbjct: 229 KANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVK 288
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
++E++N +N + ++VG+ ++ER +EL EK + N++IKN + +
Sbjct: 289 AVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTID 348
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
EKL+E F+P+GTITS RVM ++ GKS+GFGFV + SPE A KA+ N + GK LYV
Sbjct: 349 SEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYV 408
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L+++ +
Sbjct: 409 ALAQRKDVRRSQLEQQIQ 426
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAE 257
A+ ++Y+ N+ L E+F P G ++S RV + KS G+ +V Y E E
Sbjct: 48 AESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGE 107
Query: 258 KAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSI 317
KA++ N ++G+ + +Q+ R N+++KNL +I
Sbjct: 108 KAIEELNYSPIEGRPCRIMWSQRDPS----------------ARRSGDGNIFIKNLHPAI 151
Query: 318 DDERLRKEFTPFGTITSAK 336
D++ L F+ FG I S K
Sbjct: 152 DNKALHDTFSTFGKILSCK 170
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 202/262 (77%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D RA++ +N+ + GRP RIMWSQRDPSLR++G GN+FIKNL +IDNKA++DTFSAFG
Sbjct: 111 DGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFG 170
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILSCKVA DE G SK +GFVH+ET EAA +IE VNGMLLN + VFVGK + +++RE +
Sbjct: 171 RILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESK 230
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAYESPE 254
E FTNVY+KN + ++ K +E+F+P+G +TS + + +GKSRGFGFV +E+ E
Sbjct: 231 FEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHE 290
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A AV+ N KE+DG+ LYVGRAQKK ER ELKR +E ++E+L++YQGVNL+VKNLD
Sbjct: 291 SALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLD 350
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
DSID E+L +EF PFGTITSA+
Sbjct: 351 DSIDSEKLEEEFKPFGTITSAR 372
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 11/198 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV++KNL +DN + F FG + S + D++G S+G+GFV+FE E+A
Sbjct: 235 KANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALN 294
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG---EKAKL-------FTNVYIKNFGEDFN 216
+++++N ++ + ++VG+ ++ER EL E +L N+++KN + +
Sbjct: 295 AVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSID 354
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
EKL+E F+P+GTITS RVM +D GKS+GFGFV + SPE A KA+ N + + GK LYV
Sbjct: 355 SEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L+++ +
Sbjct: 415 ALAQRKDVRRSQLEQQIQ 432
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 119/224 (53%), Gaps = 18/224 (8%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKV 171
+++ L+ S++ +++ FS G + S +V +D S GY +V+F +++IE++
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N L++ + I +R+ L N++IKN +++ L + F +G I
Sbjct: 120 NYSLVDGRPC----RIMWSQRDPSLRRNGD--GNIFIKNLHPAIDNKALHDTFSAFGRIL 173
Query: 232 SYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +V ++ G+S+ FGFV YE+ E AE A++ NG ++ + ++VG+ K +R +
Sbjct: 174 SCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDR----ES 229
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+FE +K N+YVKNL +D+ + + F PFG +TS
Sbjct: 230 KFEEMKANF------TNVYVKNLAPEVDNAKFEEIFKPFGPVTS 267
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 95 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYG 154
R+ S R L K N+F+KNLD SID++ + + F FG+I S +V D+ G SKG+G
Sbjct: 326 RLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFG 385
Query: 155 FVHFETEEAANKSIEKVNGMLLNSKIVFVG 184
FV F + E A K+I ++N ++ K ++V
Sbjct: 386 FVCFSSPEEATKAITEMNQRMIQGKPLYVA 415
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+Y+ N+ L E+F P G ++S RV + KS G+ +V + +A++
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLR 323
N VDG+ + +Q+ L R N+++KNL +ID++ L
Sbjct: 120 NYSLVDGRPCRIMWSQRDPS----------------LRRNGDGNIFIKNLHPAIDNKALH 163
Query: 324 KEFTPFGTITSAK 336
F+ FG I S K
Sbjct: 164 DTFSAFGRILSCK 176
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 307 bits (786), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 142/262 (54%), Positives = 193/262 (73%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D RAL+ +N+ +K RP RIMWSQRDP+LRK+G GN++IKNLD +IDNKA++DTFSAFG
Sbjct: 99 DGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFG 158
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILSCK+A DE GNS+G+GFVH+E+ E+A +I+ VNGMLLN K VFVG +P+ +R +
Sbjct: 159 QILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQS 218
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
E+ FTNV+IKN G + + + +E+ +G +S + ND GK GFGFV Y+ +
Sbjct: 219 FEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHD 278
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KA+ + E G L+ GRA+KK ER EL++++E ++E+LN+YQGVNLY+KNLD
Sbjct: 279 VAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLD 338
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D+IDD++LR EF P GTITSAK
Sbjct: 339 DTIDDDKLRAEFAPHGTITSAK 360
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 11/208 (5%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAAN 165
+K+ NVFIKNL I + + FG S ++ +++G G+GFV ++ + A
Sbjct: 222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAV 281
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELG---EKAKL-------FTNVYIKNFGEDF 215
K+I+ ++ +F G+ + ER EL E ++L N+YIKN +
Sbjct: 282 KAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTI 341
Query: 216 NDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274
+D+KL+ F P+GTITS +VM ++ GKS+GFGFV Y SPE A KAV N + V GK LY
Sbjct: 342 DDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLY 401
Query: 275 VGRAQKKAERTQELKRRFEMLKIERLNR 302
V AQ+K R +L+++ + RL +
Sbjct: 402 VVLAQRKDVRRSQLQQQIQAKNQMRLQQ 429
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 32/232 (13%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +++ F+ G + S +V +D S GY +V+F + +++E+
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 171 VNGMLLNSKIVFVGKFIPRKER-------EKELGEKAKLFTNVYIKNFGEDFNDEKLKEM 223
+N + P KER +++ + N+YIKN +++ L +
Sbjct: 107 LN-------------YSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDT 153
Query: 224 FEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282
F +G I S ++ ++ G SRGFGFV YES E AE A+Q NG ++ K ++VG K+
Sbjct: 154 FSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKS 213
Query: 283 ERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+R Q + E+ N + N+++KNL I + + FG +S
Sbjct: 214 DRMQSFE--------EQKNSF--TNVFIKNLGTEITEAEFEELVNKFGETSS 255
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F P G +TS RV + +S G+ +V + + +A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE 105
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + + + +Q+ L + N+Y+KNLD +ID++
Sbjct: 106 ELNYSPIKERPCRIMWSQRDPA----------------LRKTGAGNIYIKNLDPAIDNKA 149
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 150 LHDTFSAFGQILSCK 164
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 305 bits (782), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/261 (59%), Positives = 194/261 (74%), Gaps = 11/261 (4%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERALDT+N ++G+ RIMWSQRDPSLRKSGVGNVFIKNLDK ID+KA+YDTFSAFG
Sbjct: 63 DAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG 122
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKV D+ +SKG+GFVH+ET+E+A+K+I KVNGM++N + VFVG F KER +
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
K FTNV+ KN ED ++LKE+ + YG IT+ +M +D GKS+GFGF +ES E
Sbjct: 183 TEVK---FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAE 239
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ V+ NGK GK +Y GRAQKK ER ELK FE +YQGVNLY+KN+D
Sbjct: 240 AAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNID 292
Query: 315 DSIDDERLRKEFTPFGTITSA 335
DSID+++LR+ F+ FGTITSA
Sbjct: 293 DSIDNDKLREVFSQFGTITSA 313
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 5/187 (2%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF KNL + + + + +G I + + D++G SKG+GF +FE+ EAA +E
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENE 248
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELG---EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
NG + + K ++ G+ + ERE EL E N+YIKN + +++KL+E+F +G
Sbjct: 249 NGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 308
Query: 229 TITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQ 286
TITS VM +D S+GFGFV Y +P+ A +AV NG+ + K LYV AQ+K R
Sbjct: 309 TITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRA 368
Query: 287 ELKRRFE 293
+L+ + +
Sbjct: 369 QLEMQHQ 375
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQ 261
+++Y+ + + +++ L E+F G +++ RV N +S + +V Y + AE+A+
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDE 320
N + GK + +Q+ R GV N+++KNLD ID +
Sbjct: 70 TLNNTPIRGKACRIMWSQRDPSL-----------------RKSGVGNVFIKNLDKGIDHK 112
Query: 321 RLRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 113 ALYDTFSAFGNILSCK 128
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/259 (55%), Positives = 193/259 (74%), Gaps = 1/259 (0%)
Query: 79 RALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL 138
+A++ +N+ +KGR RIMWSQRDPSLRK G GN+FIKNL IDNKA+YDTFS FG IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 139 SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGE 198
S K+A DE G SKG+GFVHFE E AA ++I+ +NGMLLN + ++V + RKER+ +L E
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 199 KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAE 257
+TN+Y+KN + DE+ +E+F +G I S + + DGK +GFGFV YE E A
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 258 KAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSI 317
KAV+A N E++G+ LYVGRAQKK ER LK+++E ++E++ +YQGVNL+VKNLDDS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 318 DDERLRKEFTPFGTITSAK 336
DDE+L +EF P+GTITSAK
Sbjct: 334 DDEKLEEEFAPYGTITSAK 352
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 132/231 (57%), Gaps = 17/231 (7%)
Query: 80 ALDTMNFDALKGRPI----RIMWSQRDPSLR--KSGVGNVFIKNLDKSIDNKAMYDTFSA 133
A+D +N L G+ I + +RD L K+ N+++KN++ ++ + F+
Sbjct: 182 AIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAK 241
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG I+S + +D G KG+GFV++E E A K++E +N LN + ++VG+ + ER
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERM 301
Query: 194 KELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKS 242
L ++ + + N+++KN + +DEKL+E F PYGTITS +VM + GKS
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFE 293
+GFGFV + +PE A KA+ N + V GK LYV AQ+K R +L ++ +
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 18/227 (7%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIE 169
++++ +L+ S+ +YD FS GS+ S +V +D S GY +V+F EA K+IE
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 170 KVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229
++N + ++ I +R+ L +K N++IKN D +++ L + F +G
Sbjct: 98 QLNYTPIKGRLC----RIMWSQRDPSLRKKGS--GNIFIKNLHPDIDNKALYDTFSVFGD 151
Query: 230 ITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S ++ ++ GKS+GFGFV +E A++A+ A NG ++G+ +YV + ER +L
Sbjct: 152 ILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+ + NLYVKN++ DE+ ++ F FG I SA
Sbjct: 212 EE----------TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 305 bits (781), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 153/262 (58%), Positives = 207/262 (79%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++ +N+ ++GRP RIMWSQRDPSLR++G GN+FIKNL +IDNKA++DTF+AFG
Sbjct: 104 DGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFG 163
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILSCKVA D+ G SK +GFVH+ET EAA +IE VNGMLLN + V+VGK I +K+RE +
Sbjct: 164 KILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESK 223
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMNNDGKSRGFGFVAYESPE 254
E FTNVY KN DF++E+ K++FE YG ITS Y +++GKS+GFGFV +E+ E
Sbjct: 224 FEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHE 283
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KAV N KE++G+ +YVGRAQKK ER +ELK+++E ++E+L++YQGVNL++KNLD
Sbjct: 284 SAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLD 343
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D+ID E+L +EF PFG+ITSA+
Sbjct: 344 DTIDSEKLEEEFKPFGSITSAR 365
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 121/198 (61%), Gaps = 11/198 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV+ KN+D + F A+G I S + +D +G SKG+GFV+FE E+A K
Sbjct: 228 KANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVK 287
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
+++++N +N + ++VG+ ++ER +EL EK + N++IKN + +
Sbjct: 288 AVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTID 347
Query: 217 DEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
EKL+E F+P+G+ITS RVM + GKS+GFGFV + SPE A KA+ N + + GK LYV
Sbjct: 348 SEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L+++ +
Sbjct: 408 ALAQRKDVRRSQLEQQIQ 425
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 18/226 (7%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIE 169
++++ L+ S++ +++ FS G + S +V +D S GY +V+F E K+IE
Sbjct: 51 ASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIE 110
Query: 170 KVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229
+N L+ + I +R+ L N++IKN +++ L + F +G
Sbjct: 111 DLNYSLIEGRPC----RIMWSQRDPSLRRNGD--GNIFIKNLHPAIDNKALHDTFTAFGK 164
Query: 230 ITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V +D G S+ FGFV YE+ E AE A++ NG ++ + +YVG+ K +R
Sbjct: 165 ILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDR---- 220
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+ +FE +K N+Y KN+D +E +K F +G ITS
Sbjct: 221 ESKFEEMKANF------TNVYAKNIDLDFSEEEFKKLFEAYGKITS 260
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ N+ L E+F P G + S RV + KS G+ +V + E EKA++
Sbjct: 51 ASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIE 110
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N ++G+ + +Q+ L R N+++KNL +ID++
Sbjct: 111 DLNYSLIEGRPCRIMWSQRDPS----------------LRRNGDGNIFIKNLHPAIDNKA 154
Query: 322 LRKEFTPFGTITSAK 336
L FT FG I S K
Sbjct: 155 LHDTFTAFGKILSCK 169
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 301 bits (771), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 145/259 (55%), Positives = 196/259 (75%), Gaps = 1/259 (0%)
Query: 79 RALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL 138
+A++ +N+ +KG+P RIMWSQRDPSLRK G GN++IKNL +IDNK++++TFS FG+IL
Sbjct: 94 KAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNIL 153
Query: 139 SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGE 198
SCKVA DE G S+G+GFVHFE E A +IE V+GML+N + V+V + +K+R+ +L E
Sbjct: 154 SCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEE 213
Query: 199 KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAYESPEFAE 257
FTNVY+KN ++ + E+ +E+F YG ITS + +++GK RGFGFV +E A
Sbjct: 214 VKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAA 273
Query: 258 KAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSI 317
KAV N E G+ LYVGRAQKK ER QELK+++E ++E+L +YQGVNL+VKNLDDSI
Sbjct: 274 KAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSI 333
Query: 318 DDERLRKEFTPFGTITSAK 336
DDE+L++EF PFGTITSAK
Sbjct: 334 DDEKLKEEFAPFGTITSAK 352
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 119/198 (60%), Gaps = 11/198 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV++KN+D+ + + F +G I S + +D +G +G+GFV+FE AA K
Sbjct: 215 KAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAK 274
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG---EKAKL-------FTNVYIKNFGEDFN 216
+++++N + + ++VG+ + ER +EL E A+L N+++KN + +
Sbjct: 275 AVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSID 334
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
DEKLKE F P+GTITS +VM ++ G SRGFGFV + +PE A KA+ N + V GK LYV
Sbjct: 335 DEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L ++ +
Sbjct: 395 AIAQRKEVRRNQLAQQIQ 412
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETE 161
P + SG ++++ L+ ++ +YD FS GS+ S +V +D N S GY +V+F
Sbjct: 31 PKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDH 89
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
EA K+IE++N L+ K I +R+ L +K N+YIKN +++ L
Sbjct: 90 EAGPKAIEQLNYTLIKGKPC----RIMWSQRDPSLRKKGS--GNIYIKNLHPAIDNKSLH 143
Query: 222 EMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
E F +G I S +V ++ G SRGFGFV +E+ A A++A +G ++ + +YV
Sbjct: 144 ETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVS 203
Query: 281 KAERT---QELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
K +R +E+K +F N+YVKN+D E + F +G ITSA
Sbjct: 204 KKDRQSKLEEVKAKF-------------TNVYVKNIDQETSQEEFEELFGKYGKITSA 248
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 298 bits (762), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 144/262 (54%), Positives = 190/262 (72%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D RA++++N+ ++ RPIRIM S RDPS R SG GNVFIKNLD SIDNKA+Y+TFS+FG
Sbjct: 111 DASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG 170
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVA D G SKGYGFV FE EE A +I+K+NGMLLN K VFVG F+ R++R +
Sbjct: 171 TILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARS 230
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
FTNVY+KN ++ D++LK+ F YG I+S VM + G SR FGFV + SPE
Sbjct: 231 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 290
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A AV+ NG + +LYVGRAQKK++R +EL+R+FE +I R + QG NLY+KNLD
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLD 350
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
DS++DE+L++ F+ +G +TS K
Sbjct: 351 DSVNDEKLKEMFSEYGNVTSCK 372
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 11/196 (5%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV++KNL K I + + TF +G I S V +D+ GNS+ +GFV+F + EAA ++EK+
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 172 NGMLLNSKIVFVGKFIPRKEREKEL-----GEKAKLF-----TNVYIKNFGEDFNDEKLK 221
NG+ L +++VG+ + +RE+EL E+ F +N+Y+KN + NDEKLK
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 222 EMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
EMF YG +TS +VM N+ G SRGFGFVAY +PE A A++ NGK + K LYV AQ+
Sbjct: 360 EMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQR 419
Query: 281 KAERTQELKRRFEMLK 296
K ER L+ F ++
Sbjct: 420 KEERQAHLQSLFTQIR 435
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 17/225 (7%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
++++ +LD S++ + D F+ + + +V +D S GY +V+F E A++++E +
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N + + + + + ++ L K NV+IKN +++ L E F +GTI
Sbjct: 120 NYAPIRDRPIRI--MLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSSFGTIL 173
Query: 232 SYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +V M+ G+S+G+GFV +E E A+ A+ NG ++ K ++VG ++ +R
Sbjct: 174 SCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRA----- 228
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
R E + N+YVKNL I D+ L+K F +G I+SA
Sbjct: 229 RSESGAVPSF-----TNVYVKNLPKEITDDELKKTFGKYGDISSA 268
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/262 (56%), Positives = 195/262 (74%), Gaps = 3/262 (1%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D RA+ +N+ L G+PIR+M+S RDPS+R+SG GN+FIKNLD+SID+KA++DTFS+FG
Sbjct: 89 DAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG 148
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+I+SCKVA D G SKGYGFV + EE+A K+IEK+NGMLLN K V+VG F+ R+ER+
Sbjct: 149 NIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDS- 207
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
K K FTNVY+KN E D+ LK F YG ITS VM + +GKS+GFGFV +E+ +
Sbjct: 208 TANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENAD 266
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A +AV++ NG + D K YVGRAQKK+ER EL+ R+E E +++Q NLYVKNLD
Sbjct: 267 DAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLD 326
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
SI DE+L++ F+PFGT+TS+K
Sbjct: 327 PSISDEKLKEIFSPFGTVTSSK 348
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 100 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFE 159
+RD + K+ NV++KNL +S + + + F +G I S V +D +G SKG+GFV+FE
Sbjct: 204 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 263
Query: 160 TEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKEL--------GEKAKLF--TNVYIK 209
+ A +++E +NG + K +VG+ + ERE EL E A F +N+Y+K
Sbjct: 264 NADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVK 323
Query: 210 NFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEV 268
N +DEKLKE+F P+GT+TS +VM + +G S+G GFVA+ +PE A +A+ +GK +
Sbjct: 324 NLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMI 383
Query: 269 DGKILYVGRAQKKAERTQELKRRFEMLK 296
+ K LYV AQ+K +R L+ +F ++
Sbjct: 384 ESKPLYVAIAQRKEDRRVRLQAQFSQVR 411
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 20/229 (8%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKS 167
G ++++ +LD ++ + ++D F G++++ +V +D S GYG+V+F + A ++
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I+++N + L K + V + R + G N++IKN E + + L + F +
Sbjct: 94 IQELNYIPLYGKPIRV-MYSHRDPSVRRSGAG-----NIFIKNLDESIDHKALHDTFSSF 147
Query: 228 GTITSYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQ 286
G I S +V +++ G+S+G+GFV Y + E A+KA++ NG ++ K +YVG ++ ER
Sbjct: 148 GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD- 206
Query: 287 ELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
N+ + N+YVKNL +S D+ L+ F +G ITSA
Sbjct: 207 -----------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA 244
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 195/262 (74%), Gaps = 2/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERA++ +N+ ++ RP RIMWSQRDP+LR++G GN+FIKNLD IDNKA++DTF+AFG
Sbjct: 100 DGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG 159
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVA +E G S GYGFVH+ET EAA +I+ VNGMLLN K V+VG IPRKER+ +
Sbjct: 160 NILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAK 218
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPE 254
+ E FTNVY KN + D++ +++F +G ITS + + DGKS+GFGFV +E
Sbjct: 219 IEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHN 278
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+KAV + + G+ L+V RAQKK+ER +EL+R +E K E+L ++QGVNLY+KN+
Sbjct: 279 EAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIP 338
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
+S DDERLR+EF PFG ITS K
Sbjct: 339 ESYDDERLREEFAPFGAITSCK 360
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 11/189 (5%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV+ KN+D + + F+ FG I SC + +DE G SKG+GFV+FE A K+++++
Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDEL 287
Query: 172 NGMLLNSKIVFVGKFIPRKEREKEL--------GEKAKLF--TNVYIKNFGEDFNDEKLK 221
+ + +FV + + ERE+EL EK F N+Y+KN E ++DE+L+
Sbjct: 288 HDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 347
Query: 222 EMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
E F P+G ITS ++M G SRGFGFV Y +PE A KAV NGK +D + LYV AQ+
Sbjct: 348 EEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQR 407
Query: 281 KAERTQELK 289
K R Q+L+
Sbjct: 408 KDVRRQQLE 416
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 17/225 (7%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +++ FS G++ S +V +D S GY +V+F +++E+
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N L+ ++ I +R+ L + N++IKN +++ L + F +G I
Sbjct: 108 LNYSLIRNRPC----RIMWSQRDPALRRTGQ--GNIFIKNLDAGIDNKALHDTFAAFGNI 161
Query: 231 TSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +V N+ S G+GFV YE+ E AE A++ NG ++ K +YVG + R
Sbjct: 162 LSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVG---------HHIPR 212
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+ KIE R N+Y KN+D + D+ K FT FG ITS
Sbjct: 213 KERQAKIEE-TRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 75/125 (60%), Gaps = 18/125 (14%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ----RDPSLRKS-------------GVGNVFIKNL 118
+ ++A+D ++ KG+ + + +Q R+ LR+S GV N+++KN+
Sbjct: 279 EAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGV-NLYLKNI 337
Query: 119 DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178
+S D++ + + F+ FG+I SCK+ + G S+G+GFV + E ANK++ ++NG +L++
Sbjct: 338 PESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDN 397
Query: 179 KIVFV 183
+ ++V
Sbjct: 398 RPLYV 402
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
T++Y+ + L E+F GT+ S RV + +S G+ +V + + E+A++
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + + + +Q+ L R N+++KNLD ID++
Sbjct: 107 QLNYSLIRNRPCRIMWSQRDPA----------------LRRTGQGNIFIKNLDAGIDNKA 150
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 151 LHDTFAAFGNILSCK 165
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 295 bits (754), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 137/259 (52%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Query: 79 RALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL 138
+A+ +N+ + GRP RIMWS+RDP++RK G GN+FIKNL +IDNKA+++TFS FG +L
Sbjct: 106 KAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL 165
Query: 139 SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGE 198
SCKVA DE GNS+G+GFVHF+ E A +IE VNGML+N V+V +P+K+R +L E
Sbjct: 166 SCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEE 225
Query: 199 KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAE 257
FTN+Y+KN + DE+ +++F YG I S + + +GK +GFGFV + A
Sbjct: 226 AKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAA 285
Query: 258 KAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSI 317
KAV+ NGKE + LYVGRAQKK ER +ELK+++E ++E+L ++QGVNL++KNLDDSI
Sbjct: 286 KAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSI 345
Query: 318 DDERLRKEFTPFGTITSAK 336
DDE+L++EF P+GTITSA+
Sbjct: 346 DDEKLKEEFAPYGTITSAR 364
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 120/198 (60%), Gaps = 11/198 (5%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N+++KN+D ++ FS +G I+S + +D +G KG+GFV+F AA K
Sbjct: 227 KANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAK 286
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDFN 216
++E++NG S+ ++VG+ + ER +EL ++ + + N++IKN + +
Sbjct: 287 AVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSID 346
Query: 217 DEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
DEKLKE F PYGTITS RVM + +G S+GFGFV + SPE A KA+ N + V GK LYV
Sbjct: 347 DEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYV 406
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L ++ +
Sbjct: 407 AIAQRKDVRRSQLAQQIQ 424
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + + L ++F P G I+S RV + S G+ +V Y E +KA+Q
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N E++G+ + +ER ++++ N+++KNL +ID++
Sbjct: 110 ELNYAEINGRPCRI----MWSERDPAIRKK------------GSGNIFIKNLHPAIDNKA 153
Query: 322 LRKEFTPFGTITSAK 336
L + F+ FG + S K
Sbjct: 154 LHETFSTFGEVLSCK 168
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 294 bits (753), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/262 (54%), Positives = 190/262 (72%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D RA++ +N+ L RPIRIM S RDPS R SG GN+FIKNLD SIDNKA+++TFS+FG
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 160
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVA D G SKGYGFV FE EE+A +I+K+NGML+N K VFVG FI R+ER ++
Sbjct: 161 TILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD 220
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPE 254
FTNVY+KN ++ +++L++ F +G I+S VM + G SR FGFV +E E
Sbjct: 221 ENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTE 280
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A AV+ NG + +LYVGRAQKK+ER +EL+R+FE +I R + QG NLY+KNLD
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLD 340
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
DS+DDE+L++ F+ +G +TS+K
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSK 362
Score = 157 bits (397), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 126/217 (58%), Gaps = 11/217 (5%)
Query: 91 GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS 150
G IR RD + NV++KNL K I + TF FG I S V +D+ GNS
Sbjct: 209 GHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 151 KGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKEL-----GEKAKLF-- 203
+ +GFV+FE EAA ++EK+NG+ L +++VG+ + ERE+EL E+ F
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK 328
Query: 204 ---TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKA 259
N+Y+KN + +DEKLKEMF YG +TS +VM N G SRGFGFVAY +PE A +A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 260 VQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLK 296
+ NGK + K LY+ AQ+K +R L+ F ++
Sbjct: 389 LSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR 425
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 17/225 (7%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+++ +LD + ++D F +++S +V +D+ S GY +++F A +++E +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N L + + + + ++ L K N++IKN +++ L E F +GTI
Sbjct: 110 NYTPLFDRPIRI--MLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSSFGTIL 163
Query: 232 SYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +V M+ G+S+G+GFV +E E A+ A+ NG ++ K ++VG ++ ER ++
Sbjct: 164 SCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD--- 220
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
E R N+YVKNL I ++ LRK F FG I+SA
Sbjct: 221 --ENTPTPRF-----TNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 189/262 (72%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+ RIMWSQRDP+LRK+G GN+FIKNLD+SIDNKA++DTF+AFG
Sbjct: 99 DGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG 158
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILSCKV DE G S+G+ FVH+ T EAA+ +I+ VNGMLLN K V+VG + +KER +
Sbjct: 159 DILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSK 218
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
+ E FTNVYIKN + D + +++ +P+G S + ++ G S+GFGFV YE+ E
Sbjct: 219 VEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHE 278
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KAV N KEV+GK LY GRAQ K+ER ELK+ E ++E + GVNLYVKNLD
Sbjct: 279 SARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLD 338
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D DD+RLR EF FGTITS+K
Sbjct: 339 DEWDDDRLRAEFEAFGTITSSK 360
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 120/200 (60%), Gaps = 11/200 (5%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV+IKN+D + + D FG +S +++DE+G SKG+GFV++E E+A K+++++
Sbjct: 228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDEL 287
Query: 172 NGMLLNSKIVFVGKFIPRKEREKEL----------GEKAKLFTNVYIKNFGEDFNDEKLK 221
N +N K ++ G+ + ERE EL E N+Y+KN ++++D++L+
Sbjct: 288 NEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLR 347
Query: 222 EMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
FE +GTITS +VM +D G SRGFGFV Y SP+ A KAV NGK + K LYV AQ+
Sbjct: 348 AEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 281 KAERTQELKRRFEMLKIERL 300
K R Q L+ + +R+
Sbjct: 408 KDVRRQALESQIAQRAQQRM 427
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
KS N+++KNLD D+ + F AFG+I S KV +D+ G S+G+GFV + + + A K
Sbjct: 326 KSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATK 385
Query: 167 SIEKVNGMLLNSKIVFVG----KFIPRKEREKELGEKAK 201
++ ++NG ++ +K ++V K + R+ E ++ ++A+
Sbjct: 386 AVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQ 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F G + S RV + +S G+ +V Y + E+A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + G+ + +Q R L++ QG N+++KNLD SID++
Sbjct: 106 HLNYSLIKGQSCRIMWSQ----RDPALRKTG-----------QG-NIFIKNLDQSIDNKA 149
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 150 LHDTFAAFGDILSCK 164
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 189/262 (72%), Gaps = 1/262 (0%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERAL+ +N+ +KG+ RIMWSQRDP+LRK+G GN+FIKNLD+SIDNKA++DTF+AFG
Sbjct: 99 DGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG 158
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILSCKV DE G S+G+ FVH+ T EAA+ +I+ VNGMLLN K V+VG + +KER +
Sbjct: 159 DILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSK 218
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
+ E FTNVYIKN + D + +++ +P+G S + ++ G S+GFGFV YE+ E
Sbjct: 219 VEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHE 278
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KAV N KEV+GK LY GRAQ K+ER ELK+ E ++E + GVNLYVKNLD
Sbjct: 279 SARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLD 338
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D DD+RLR EF FGTITS+K
Sbjct: 339 DEWDDDRLRAEFEAFGTITSSK 360
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 120/200 (60%), Gaps = 11/200 (5%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV+IKN+D + + D FG +S +++DE+G SKG+GFV++E E+A K+++++
Sbjct: 228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDEL 287
Query: 172 NGMLLNSKIVFVGKFIPRKEREKEL----------GEKAKLFTNVYIKNFGEDFNDEKLK 221
N +N K ++ G+ + ERE EL E N+Y+KN ++++D++L+
Sbjct: 288 NEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLR 347
Query: 222 EMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
FE +GTITS +VM +D G SRGFGFV Y SP+ A KAV NGK + K LYV AQ+
Sbjct: 348 AEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 281 KAERTQELKRRFEMLKIERL 300
K R Q L+ + +R+
Sbjct: 408 KDVRRQALESQIAQRAQQRM 427
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
KS N+++KNLD D+ + F AFG+I S KV +D+ G S+G+GFV + + + A K
Sbjct: 326 KSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATK 385
Query: 167 SIEKVNGMLLNSKIVFVG----KFIPRKEREKELGEKAK 201
++ ++NG ++ +K ++V K + R+ E ++ ++A+
Sbjct: 386 AVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQ 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
++Y+ + L E+F G + S RV + +S G+ +V Y + E+A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321
N + G+ + +Q R L++ QG N+++KNLD SID++
Sbjct: 106 HLNYSLIKGQSCRIMWSQ----RDPALRKTG-----------QG-NIFIKNLDQSIDNKA 149
Query: 322 LRKEFTPFGTITSAK 336
L F FG I S K
Sbjct: 150 LHDTFAAFGDILSCK 164
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 190/258 (73%), Gaps = 1/258 (0%)
Query: 80 ALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS 139
A++ +NF +KG+ RIMWSQRDPSLRK G GN+FIKNL IDNKA+YDTFS FG+ILS
Sbjct: 92 AIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 140 CKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEK 199
KVA DE G SKG+G+VHFE +E+A+++I+ +NGMLLN + ++VG + +KERE + E
Sbjct: 152 SKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEM 211
Query: 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAYESPEFAEK 258
FTNVYIKN + D++ +E+ +G S + +G+++GFGFV + + E A K
Sbjct: 212 KANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVK 271
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
V+ N E G+ LYV RAQKK ER QELK+++E ++E++ +YQG+NL++KNLDDSID
Sbjct: 272 CVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSID 331
Query: 319 DERLRKEFTPFGTITSAK 336
D++L +EF P+GTITSAK
Sbjct: 332 DKKLEEEFAPYGTITSAK 349
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 17/231 (7%)
Query: 80 ALDTMNFDALKGRPI----RIMWSQRDPSLR--KSGVGNVFIKNLDKSIDNKAMYDTFSA 133
A+D +N L G+ I + +R+ K+ NV+IKN++ +K + +
Sbjct: 179 AIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAK 238
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG S + + +G +KG+GFV+F E A K +E++N + ++V + + ER+
Sbjct: 239 FGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQ 298
Query: 194 KELG--------EKAKLF--TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKS 242
+EL EK + N++IKN + +D+KL+E F PYGTITS +VM + GKS
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFE 293
+GFGFV + +PE A KA+ N + V GK LYV AQ+K R +L ++ +
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 409
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 18/226 (7%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIE 169
++++ +LD S+ +YD FS G++ S +V +D S GY +V+F +AA +IE
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 170 KVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229
K+N + K+ I +R+ L +K N++IKN D +++ L + F +G
Sbjct: 95 KLNFTPIKGKLC----RIMWSQRDPSLRKKGA--GNIFIKNLHPDIDNKALYDTFSVFGN 148
Query: 230 ITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V ++ GKS+GFG+V +E E A +A+ A NG ++G+ +YVG K ER
Sbjct: 149 ILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKER---- 204
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+ +FE +K N+Y+KN++ D+ + FG S
Sbjct: 205 ESKFEEMKANF------TNVYIKNINTETTDKEFEELVAKFGKTDS 244
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ----RDPSLRKS-------------GVGNVFIKNL 118
D + ++ +N KG+P+ + +Q R L+K G+ N+FIKNL
Sbjct: 268 DAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGI-NLFIKNL 326
Query: 119 DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178
D SID+K + + F+ +G+I S KV E G SKG+GFV F T E A K+I + N ++
Sbjct: 327 DDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 386
Query: 179 KIVFVG 184
K ++V
Sbjct: 387 KPLYVA 392
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 189 RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFG 246
++E E + + ++Y+ + ++ L ++F P G ++S RV + S G+
Sbjct: 20 KQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYA 79
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV 306
+V + + A+ A++ N + GK+ + +Q+ L +
Sbjct: 80 YVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPS----------------LRKKGAG 123
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
N+++KNL ID++ L F+ FG I S+K
Sbjct: 124 NIFIKNLHPDIDNKALYDTFSVFGNILSSK 153
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/266 (55%), Positives = 204/266 (76%), Gaps = 3/266 (1%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+ D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FS
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186
Query: 193 EKELGEKAK-LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAY 250
E+ + + FTNV++KN G+D +DEKLKE+F YG S +V+ + GKS+GFGFV Y
Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
E+ E A+KAV +GK +DGK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYI 306
Query: 311 KNLDDSIDDERLRKEFTPFGTITSAK 336
KNLD++I+DE+L++EF+ FG+I+ AK
Sbjct: 307 KNLDETINDEKLKEEFSSFGSISRAK 332
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 12/183 (6%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN+ ID++ + + F +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 172 NGMLLNSKIVFVGKFIPRKER---------EKELGEKAKLF-TNVYIKNFGEDFNDEKLK 221
+G ++ K+++VG+ + ER L EK++ +YIKN E NDEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQ 279
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V G+A+
Sbjct: 320 EEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379
Query: 280 KKA 282
++
Sbjct: 380 RRC 382
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKVNG 173
+ +LD + +Y F G + ++ +D S GYG+V+F A ++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 174 MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY 233
L+N K + P +R ++ G N++IKN + ++ L +F +G I S
Sbjct: 82 DLINGKPFRLMWSQP-DDRLRKSG-----VGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 234 RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFE 293
+V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 136 KVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR-- 193
Query: 294 MLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+R N++VKN+ D IDDE+L++ F +G S K
Sbjct: 194 -------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/266 (55%), Positives = 204/266 (76%), Gaps = 3/266 (1%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+ D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FS
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186
Query: 193 EKELGEKAK-LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAY 250
E+ + + FTNV++KN G+D +DEKLKE+F YG S +V+ + GKS+GFGFV Y
Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
E+ E A+KAV +GK +DGK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYI 306
Query: 311 KNLDDSIDDERLRKEFTPFGTITSAK 336
KNLD++I+DE+L++EF+ FG+I+ AK
Sbjct: 307 KNLDETINDEKLKEEFSSFGSISRAK 332
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 12/183 (6%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN+ ID++ + + F +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 172 NGMLLNSKIVFVGKFIPRKER---------EKELGEKAKLF-TNVYIKNFGEDFNDEKLK 221
+G ++ K+++VG+ + ER L EK++ +YIKN E NDEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQ 279
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V G+A+
Sbjct: 320 EEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Query: 280 KKA 282
++
Sbjct: 380 RRC 382
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKVNG 173
+ +LD + +Y F G + ++ +D S GYG+V+F A ++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 174 MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY 233
L+N K + P +R ++ G N++IKN + ++ L +F +G I S
Sbjct: 82 DLINGKPFRLMWSQP-DDRLRKSG-----VGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 234 RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFE 293
+V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 136 KVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR-- 193
Query: 294 MLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+R N++VKN+ D IDDE+L++ F +G S K
Sbjct: 194 -------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/266 (55%), Positives = 204/266 (76%), Gaps = 3/266 (1%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+ D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FS
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186
Query: 193 EKELGEKAK-LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAY 250
E+ + + FTNV++KN G+D +DEKLKE+F YG S +V+ + GKS+GFGFV Y
Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
E+ E A+KAV +GK +DGK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYI 306
Query: 311 KNLDDSIDDERLRKEFTPFGTITSAK 336
KNLD++I+DE+L++EF+ FG+I+ AK
Sbjct: 307 KNLDETINDEKLKEEFSSFGSISRAK 332
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 12/183 (6%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN+ ID++ + + F +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 172 NGMLLNSKIVFVGKFIPRKER---------EKELGEKAKLF-TNVYIKNFGEDFNDEKLK 221
+G ++ K+++VG+ + ER L EK++ +YIKN E NDEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQ 279
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V G+A+
Sbjct: 320 EEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Query: 280 KKA 282
++
Sbjct: 380 RRC 382
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKVNG 173
+ +LD + +Y F G + ++ +D S GYG+V+F A ++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 174 MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY 233
L+N K + P +R ++ G N++IKN + ++ L +F +G I S
Sbjct: 82 DLINGKPFRLMWSQP-DDRLRKSG-----VGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 234 RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFE 293
+V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 136 KVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR-- 193
Query: 294 MLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+R N++VKN+ D IDDE+L++ F +G S K
Sbjct: 194 -------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/266 (55%), Positives = 204/266 (76%), Gaps = 3/266 (1%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+ D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FS
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186
Query: 193 EKELGEKAK-LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAY 250
E+ + + FTNV++KN G+D +DEKLKE+F YG S +V+ + GKS+GFGFV Y
Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
E+ E A+KAV +GK +DGK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYI 306
Query: 311 KNLDDSIDDERLRKEFTPFGTITSAK 336
KNLD++I+DE+L++EF+ FG+I+ AK
Sbjct: 307 KNLDETINDEKLKEEFSSFGSISRAK 332
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 12/183 (6%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN+ ID++ + + F +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 172 NGMLLNSKIVFVGKFIPRKER---------EKELGEKAKLF-TNVYIKNFGEDFNDEKLK 221
+G ++ K+++VG+ + ER L EK++ +YIKN E NDEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQ 279
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V G+A+
Sbjct: 320 EEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Query: 280 KKA 282
++
Sbjct: 380 RRC 382
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKVNG 173
+ +LD + +Y F G + ++ +D S GYG+V+F A ++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 174 MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY 233
L+N K + P +R ++ G N++IKN + ++ L +F +G I S
Sbjct: 82 DLINGKPFRLMWSQP-DDRLRKSG-----VGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 234 RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFE 293
+V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 136 KVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR-- 193
Query: 294 MLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+R N++VKN+ D IDDE+L++ F +G S K
Sbjct: 194 -------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/266 (55%), Positives = 204/266 (76%), Gaps = 3/266 (1%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+ D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FS
Sbjct: 68 FPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186
Query: 193 EKELGEKAK-LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAY 250
E+ + + FTNV++KN G+D +DEKLKE+F YG S +V+ + GKS+GFGFV Y
Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
E+ E A+KAV +GK +DGK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYI 306
Query: 311 KNLDDSIDDERLRKEFTPFGTITSAK 336
KNLD++I+DE+L++EF+ FG+I+ AK
Sbjct: 307 KNLDETINDEKLKEEFSSFGSISRAK 332
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 12/183 (6%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN+ ID++ + + F +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 172 NGMLLNSKIVFVGKFIPRKER---------EKELGEKAKLF-TNVYIKNFGEDFNDEKLK 221
+G ++ K+++VG+ + ER L EK++ +YIKN E NDEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQ 279
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V G+A+
Sbjct: 320 EEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Query: 280 KKA 282
++
Sbjct: 380 RRC 382
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKVNG 173
+ +LD + +Y F G + ++ +D S GYG+V+F A ++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 174 MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY 233
L+N K + P +R ++ G N++IKN + ++ L +F +G I S
Sbjct: 82 DLINGKPFRLMWSQP-DDRLRKSG-----VGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 234 RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFE 293
+V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 136 KVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR-- 193
Query: 294 MLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+R N++VKN+ D IDDE+L++ F +G S K
Sbjct: 194 -------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,492,401
Number of Sequences: 539616
Number of extensions: 5355250
Number of successful extensions: 19434
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 444
Number of HSP's that attempted gapping in prelim test: 15727
Number of HSP's gapped (non-prelim): 2548
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)