Query psy12549
Match_columns 336
No_of_seqs 215 out of 2846
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 22:10:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-53 2.7E-58 408.6 32.8 310 19-336 1-316 (562)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.5E-47 1.2E-51 343.6 29.4 261 16-283 1-351 (352)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-45 4E-50 343.9 28.2 303 17-336 1-427 (481)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 5.1E-44 1.1E-48 331.7 23.7 294 17-333 57-369 (578)
5 KOG0145|consensus 100.0 1.3E-43 2.7E-48 285.5 21.2 262 13-281 36-358 (360)
6 KOG0123|consensus 100.0 3E-43 6.4E-48 313.2 24.9 298 19-336 2-301 (369)
7 TIGR01628 PABP-1234 polyadenyl 100.0 4.3E-42 9.4E-47 329.0 30.8 272 17-294 87-377 (562)
8 KOG0117|consensus 100.0 2.2E-42 4.9E-47 297.8 22.2 247 19-287 84-337 (506)
9 KOG0127|consensus 100.0 7.1E-40 1.5E-44 288.5 24.6 304 19-327 6-467 (678)
10 TIGR01622 SF-CC1 splicing fact 100.0 1.9E-37 4.2E-42 290.4 29.6 260 14-281 85-448 (457)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4E-37 8.6E-42 292.2 27.3 261 14-280 171-501 (509)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-36 3.5E-41 283.7 27.4 250 19-281 97-480 (481)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.1E-36 2.3E-41 276.3 23.3 164 110-281 3-171 (352)
14 TIGR01645 half-pint poly-U bin 100.0 3.9E-36 8.5E-41 279.5 27.3 168 16-188 105-283 (612)
15 KOG0148|consensus 100.0 2.1E-35 4.6E-40 239.4 20.3 223 18-284 6-241 (321)
16 KOG0117|consensus 100.0 2.5E-35 5.4E-40 254.4 20.1 242 66-336 38-290 (506)
17 KOG0144|consensus 100.0 8E-36 1.7E-40 256.3 16.3 264 12-281 28-504 (510)
18 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-34 3E-39 268.9 22.6 235 75-336 20-266 (578)
19 KOG0145|consensus 100.0 5.5E-34 1.2E-38 229.9 16.8 221 108-336 39-309 (360)
20 TIGR01659 sex-lethal sex-letha 100.0 2E-31 4.4E-36 236.3 20.3 170 106-283 103-277 (346)
21 KOG0123|consensus 100.0 1.6E-31 3.6E-36 238.0 19.2 259 21-287 79-355 (369)
22 KOG0127|consensus 100.0 1.6E-31 3.5E-36 235.9 18.4 227 110-336 5-323 (678)
23 TIGR01622 SF-CC1 splicing fact 100.0 8.7E-31 1.9E-35 245.5 23.9 170 109-279 88-264 (457)
24 TIGR01659 sex-lethal sex-letha 100.0 9.9E-31 2.1E-35 232.0 19.1 170 14-190 103-276 (346)
25 TIGR01645 half-pint poly-U bin 100.0 4.3E-30 9.3E-35 239.3 20.0 173 109-281 106-284 (612)
26 KOG0110|consensus 100.0 4.9E-30 1.1E-34 233.6 19.0 257 16-283 383-695 (725)
27 KOG0110|consensus 100.0 4.5E-30 9.7E-35 233.8 13.7 283 13-336 222-644 (725)
28 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.5E-29 5.4E-34 238.9 19.2 223 108-336 173-450 (509)
29 KOG0124|consensus 100.0 4.3E-28 9.3E-33 204.7 18.4 252 20-276 115-530 (544)
30 KOG0144|consensus 100.0 2.6E-28 5.7E-33 210.1 14.6 193 90-289 14-214 (510)
31 KOG0148|consensus 100.0 8.2E-28 1.8E-32 195.4 15.8 170 14-193 58-242 (321)
32 KOG0147|consensus 99.9 8.2E-27 1.8E-31 207.3 12.7 255 17-280 178-527 (549)
33 KOG0131|consensus 99.9 3.9E-26 8.5E-31 175.3 11.9 172 15-192 6-180 (203)
34 KOG4212|consensus 99.9 5E-24 1.1E-28 184.0 21.7 164 14-183 40-288 (608)
35 KOG0131|consensus 99.9 2.3E-25 5E-30 171.1 11.0 171 107-284 6-180 (203)
36 KOG1190|consensus 99.9 1.5E-24 3.2E-29 185.9 16.4 305 13-334 23-443 (492)
37 KOG0109|consensus 99.9 7.2E-25 1.6E-29 180.1 10.7 151 111-284 3-153 (346)
38 KOG4211|consensus 99.9 1.3E-22 2.7E-27 178.4 18.9 247 18-275 10-352 (510)
39 KOG0124|consensus 99.9 2.3E-23 5E-28 176.2 10.7 169 111-279 114-288 (544)
40 KOG0146|consensus 99.9 8.3E-23 1.8E-27 166.0 11.2 190 91-282 2-366 (371)
41 KOG0109|consensus 99.9 1.2E-21 2.6E-26 161.2 9.4 153 20-196 4-157 (346)
42 KOG0147|consensus 99.8 3.3E-21 7.1E-26 171.8 9.2 173 109-282 178-359 (549)
43 KOG0146|consensus 99.8 1.2E-20 2.5E-25 153.6 10.5 169 17-191 18-367 (371)
44 KOG4205|consensus 99.8 2.6E-20 5.7E-25 160.6 9.7 173 109-285 5-180 (311)
45 KOG0120|consensus 99.8 3.2E-19 6.9E-24 161.2 15.4 254 14-279 171-490 (500)
46 KOG1190|consensus 99.8 3.9E-18 8.4E-23 146.7 18.8 245 20-281 152-491 (492)
47 KOG4205|consensus 99.8 1.5E-18 3.2E-23 149.8 10.7 239 17-265 5-256 (311)
48 KOG0105|consensus 99.8 1.7E-17 3.6E-22 128.1 12.6 154 109-269 5-176 (241)
49 KOG4206|consensus 99.8 5.1E-17 1.1E-21 130.3 15.5 164 111-279 10-220 (221)
50 KOG1365|consensus 99.7 1.2E-17 2.7E-22 142.5 10.4 262 12-279 54-360 (508)
51 KOG1457|consensus 99.7 1.7E-16 3.6E-21 126.3 13.0 159 108-268 32-273 (284)
52 KOG1548|consensus 99.7 7.5E-16 1.6E-20 130.2 16.0 170 110-281 134-352 (382)
53 KOG1456|consensus 99.7 7.3E-15 1.6E-19 125.3 21.8 298 15-331 28-432 (494)
54 KOG4206|consensus 99.7 7.2E-16 1.6E-20 123.8 13.8 160 15-186 6-219 (221)
55 PLN03134 glycine-rich RNA-bind 99.7 3.4E-16 7.4E-21 122.1 11.7 83 108-190 32-115 (144)
56 KOG0105|consensus 99.7 1.1E-15 2.3E-20 118.2 13.8 147 16-176 4-175 (241)
57 KOG1456|consensus 99.7 4.1E-14 8.9E-19 120.8 24.5 252 4-270 106-474 (494)
58 KOG4211|consensus 99.7 1.2E-15 2.5E-20 134.9 15.5 166 110-279 10-180 (510)
59 PLN03134 glycine-rich RNA-bind 99.7 6.6E-16 1.4E-20 120.5 10.8 83 201-283 32-116 (144)
60 KOG4212|consensus 99.7 3.8E-15 8.3E-20 129.5 16.2 168 110-277 44-290 (608)
61 PF00076 RRM_1: RNA recognitio 99.6 2.4E-15 5.2E-20 103.0 9.6 70 113-182 1-70 (70)
62 PF00076 RRM_1: RNA recognitio 99.6 5.6E-15 1.2E-19 101.2 9.4 69 206-274 1-70 (70)
63 KOG0106|consensus 99.6 1.5E-15 3.2E-20 123.3 7.3 155 112-279 3-169 (216)
64 KOG1548|consensus 99.6 6.6E-14 1.4E-18 118.6 15.0 165 16-189 132-352 (382)
65 KOG4307|consensus 99.6 8.5E-14 1.8E-18 127.5 14.4 165 17-187 310-512 (944)
66 PF14259 RRM_6: RNA recognitio 99.6 4.7E-14 1E-18 96.6 9.8 70 113-182 1-70 (70)
67 KOG0122|consensus 99.5 2.6E-14 5.6E-19 115.6 8.9 81 201-281 187-269 (270)
68 KOG0122|consensus 99.5 3.7E-14 8.1E-19 114.7 9.7 82 108-189 187-269 (270)
69 KOG1457|consensus 99.5 6.7E-14 1.5E-18 111.6 10.8 151 17-176 33-273 (284)
70 KOG0125|consensus 99.5 1.4E-14 3E-19 121.8 7.0 79 204-282 97-175 (376)
71 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 3.1E-18 94.1 9.9 69 206-274 1-70 (70)
72 KOG0125|consensus 99.5 7.6E-14 1.6E-18 117.4 9.0 99 88-189 76-174 (376)
73 COG0724 RNA-binding proteins ( 99.5 6.3E-13 1.4E-17 116.5 13.3 128 110-237 115-259 (306)
74 PLN03120 nucleic acid binding 99.5 3.8E-13 8.3E-18 112.3 9.7 76 204-281 5-80 (260)
75 PLN03120 nucleic acid binding 99.5 6.5E-13 1.4E-17 110.9 10.8 78 110-190 4-81 (260)
76 COG0724 RNA-binding proteins ( 99.5 5.2E-13 1.1E-17 117.0 11.0 133 203-335 115-255 (306)
77 KOG0106|consensus 99.4 2.1E-13 4.6E-18 110.8 6.5 147 20-186 3-168 (216)
78 KOG0107|consensus 99.4 6.1E-13 1.3E-17 102.4 8.4 78 109-190 9-86 (195)
79 KOG0114|consensus 99.4 2E-12 4.4E-17 90.5 10.0 78 204-282 19-96 (124)
80 KOG0121|consensus 99.4 4.8E-13 1E-17 97.4 7.1 79 110-188 36-115 (153)
81 smart00362 RRM_2 RNA recogniti 99.4 2.2E-12 4.8E-17 88.2 10.0 71 112-183 1-71 (72)
82 KOG0114|consensus 99.4 2.3E-12 5.1E-17 90.2 9.5 89 103-193 11-99 (124)
83 KOG0149|consensus 99.4 6E-13 1.3E-17 107.3 7.4 77 111-188 13-90 (247)
84 smart00362 RRM_2 RNA recogniti 99.4 2.6E-12 5.6E-17 87.9 9.6 72 205-276 1-72 (72)
85 PLN03213 repressor of silencin 99.4 9.1E-13 2E-17 116.6 8.9 77 204-282 11-89 (759)
86 PLN03213 repressor of silencin 99.4 1.5E-12 3.2E-17 115.3 9.2 80 109-191 9-90 (759)
87 KOG0121|consensus 99.4 1.1E-12 2.3E-17 95.6 6.6 83 201-283 34-118 (153)
88 PLN03121 nucleic acid binding 99.4 3.5E-12 7.5E-17 104.8 10.4 78 109-189 4-81 (243)
89 KOG0107|consensus 99.4 1.2E-12 2.6E-17 100.7 7.0 78 203-283 10-87 (195)
90 KOG4207|consensus 99.4 7.7E-13 1.7E-17 104.4 6.0 80 200-279 10-91 (256)
91 KOG4307|consensus 99.4 6E-12 1.3E-16 115.6 12.1 172 110-283 311-516 (944)
92 KOG0113|consensus 99.4 4.6E-12 1E-16 105.5 10.3 85 102-186 93-178 (335)
93 KOG0149|consensus 99.4 1.2E-12 2.5E-17 105.7 6.3 77 203-280 12-90 (247)
94 KOG0126|consensus 99.4 1.1E-13 2.5E-18 106.8 0.5 80 109-188 34-114 (219)
95 KOG1365|consensus 99.4 6.6E-13 1.4E-17 113.9 5.1 162 20-188 163-361 (508)
96 KOG0126|consensus 99.4 2.8E-13 6.1E-18 104.7 2.4 78 204-281 36-115 (219)
97 PLN03121 nucleic acid binding 99.3 5.6E-12 1.2E-16 103.6 9.6 76 204-281 6-81 (243)
98 cd00590 RRM RRM (RNA recogniti 99.3 1.5E-11 3.3E-16 84.4 10.5 74 112-185 1-74 (74)
99 KOG0113|consensus 99.3 4.7E-12 1E-16 105.4 8.8 81 201-281 99-181 (335)
100 PF13893 RRM_5: RNA recognitio 99.3 9.8E-12 2.1E-16 80.8 8.6 56 220-278 1-56 (56)
101 smart00360 RRM RNA recognition 99.3 1.1E-11 2.3E-16 84.4 8.9 69 115-183 1-70 (71)
102 KOG0111|consensus 99.3 1.2E-12 2.5E-17 104.3 4.5 81 202-282 9-91 (298)
103 KOG4207|consensus 99.3 3.5E-12 7.6E-17 100.7 6.8 80 108-187 11-91 (256)
104 KOG0120|consensus 99.3 1.8E-11 3.8E-16 111.4 11.9 165 17-189 288-492 (500)
105 KOG0130|consensus 99.3 3.8E-12 8.1E-17 93.6 6.0 84 108-191 70-154 (170)
106 smart00360 RRM RNA recognition 99.3 1E-11 2.2E-16 84.5 8.0 69 208-276 1-71 (71)
107 cd00590 RRM RRM (RNA recogniti 99.3 2.9E-11 6.2E-16 83.1 9.7 73 205-277 1-74 (74)
108 KOG0111|consensus 99.3 3.9E-12 8.5E-17 101.3 3.9 84 109-192 9-93 (298)
109 KOG4660|consensus 99.2 7.4E-11 1.6E-15 106.5 10.5 143 11-169 68-231 (549)
110 PF13893 RRM_5: RNA recognitio 99.2 9.5E-11 2.1E-15 76.2 8.3 56 127-186 1-56 (56)
111 KOG0130|consensus 99.2 2.1E-11 4.6E-16 89.7 5.6 78 204-281 73-152 (170)
112 KOG0108|consensus 99.2 6.3E-11 1.4E-15 107.2 8.6 83 204-286 19-103 (435)
113 smart00361 RRM_1 RNA recogniti 99.2 1.2E-10 2.6E-15 79.4 7.9 60 217-276 2-70 (70)
114 KOG0108|consensus 99.2 8.7E-11 1.9E-15 106.3 9.0 82 111-192 19-101 (435)
115 smart00361 RRM_1 RNA recogniti 99.2 1.8E-10 3.9E-15 78.5 8.4 60 124-183 2-69 (70)
116 KOG0128|consensus 99.2 2.8E-12 6E-17 120.6 -1.0 233 17-280 570-814 (881)
117 KOG0129|consensus 99.2 9.3E-10 2E-14 98.7 14.4 153 109-262 258-432 (520)
118 KOG0129|consensus 99.1 1.5E-09 3.3E-14 97.3 14.5 158 11-170 252-432 (520)
119 KOG4454|consensus 99.1 3E-11 6.6E-16 96.3 2.8 143 108-268 7-150 (267)
120 KOG0112|consensus 99.1 9.5E-11 2.1E-15 111.0 3.6 165 108-286 370-536 (975)
121 KOG4454|consensus 99.0 1.1E-10 2.3E-15 93.2 1.9 149 13-183 4-157 (267)
122 KOG0128|consensus 99.0 6.4E-11 1.4E-15 111.6 -0.5 146 19-188 668-814 (881)
123 KOG4208|consensus 99.0 2.5E-09 5.5E-14 85.0 8.2 83 107-189 46-130 (214)
124 KOG0226|consensus 99.0 7.6E-10 1.6E-14 90.4 5.3 178 113-292 99-281 (290)
125 KOG0226|consensus 99.0 1E-09 2.3E-14 89.6 5.8 159 22-186 100-267 (290)
126 KOG0132|consensus 98.9 2E-09 4.4E-14 100.6 6.5 87 5-102 408-495 (894)
127 KOG0112|consensus 98.9 1.7E-09 3.6E-14 102.7 5.9 165 11-190 365-532 (975)
128 KOG0415|consensus 98.9 2.5E-09 5.5E-14 91.3 6.1 83 201-283 237-321 (479)
129 KOG0415|consensus 98.9 3.3E-09 7.1E-14 90.6 6.7 83 109-191 238-321 (479)
130 KOG4210|consensus 98.9 1.5E-09 3.3E-14 94.0 4.2 173 109-282 87-265 (285)
131 KOG0132|consensus 98.8 7.5E-09 1.6E-13 96.9 7.7 78 204-285 422-499 (894)
132 KOG4208|consensus 98.8 1.1E-08 2.4E-13 81.3 7.3 78 204-281 50-130 (214)
133 KOG4210|consensus 98.8 6.4E-09 1.4E-13 90.1 6.0 169 17-191 87-266 (285)
134 KOG0153|consensus 98.8 2.7E-08 5.9E-13 85.0 7.6 74 203-280 228-302 (377)
135 KOG4661|consensus 98.7 2.9E-08 6.2E-13 90.0 7.6 80 110-189 405-485 (940)
136 KOG0153|consensus 98.7 5E-08 1.1E-12 83.4 8.3 75 109-188 227-302 (377)
137 KOG0533|consensus 98.7 1.1E-07 2.3E-12 79.6 8.7 81 110-190 83-163 (243)
138 KOG4660|consensus 98.6 6.9E-08 1.5E-12 87.6 4.8 167 101-279 66-248 (549)
139 KOG4676|consensus 98.5 1.2E-07 2.6E-12 82.3 5.7 199 20-270 9-215 (479)
140 PF04059 RRM_2: RNA recognitio 98.5 9.1E-07 2E-11 63.3 9.1 77 111-187 2-85 (97)
141 KOG0533|consensus 98.5 3.1E-07 6.7E-12 76.8 7.4 78 204-281 84-162 (243)
142 PF04059 RRM_2: RNA recognitio 98.5 1E-06 2.3E-11 63.0 9.0 79 204-282 2-88 (97)
143 KOG4661|consensus 98.5 3.7E-07 8E-12 83.0 6.8 78 204-281 406-485 (940)
144 KOG0116|consensus 98.4 7.4E-07 1.6E-11 80.6 7.1 79 110-189 288-367 (419)
145 KOG0151|consensus 98.4 8.9E-07 1.9E-11 82.5 7.3 80 109-188 173-256 (877)
146 KOG0151|consensus 98.4 6E-07 1.3E-11 83.7 5.6 83 15-99 171-254 (877)
147 KOG2193|consensus 98.3 7.3E-08 1.6E-12 84.4 -0.5 153 112-281 3-157 (584)
148 KOG0116|consensus 98.3 1E-06 2.2E-11 79.8 6.2 77 204-281 289-367 (419)
149 KOG4209|consensus 98.3 1.6E-06 3.4E-11 72.8 5.8 82 107-189 98-180 (231)
150 PF11608 Limkain-b1: Limkain b 98.2 8.5E-06 1.8E-10 55.5 7.0 70 204-281 3-77 (90)
151 KOG2193|consensus 98.2 1.2E-07 2.5E-12 83.1 -2.5 152 19-187 2-155 (584)
152 KOG4209|consensus 98.1 6E-06 1.3E-10 69.4 6.0 79 202-281 100-180 (231)
153 PF08777 RRM_3: RNA binding mo 98.1 2.3E-05 5E-10 57.5 7.7 76 204-283 2-82 (105)
154 PF11608 Limkain-b1: Limkain b 97.9 3.9E-05 8.5E-10 52.3 6.1 71 19-102 3-77 (90)
155 KOG4676|consensus 97.9 1E-05 2.3E-10 70.5 4.0 131 204-335 8-181 (479)
156 KOG0115|consensus 97.8 8.1E-05 1.8E-09 61.6 7.1 89 75-172 5-93 (275)
157 COG5175 MOT2 Transcriptional r 97.8 0.00013 2.8E-09 62.6 8.3 112 112-223 116-240 (480)
158 PF08777 RRM_3: RNA binding mo 97.7 9.5E-05 2.1E-09 54.2 5.3 68 111-183 2-74 (105)
159 COG5175 MOT2 Transcriptional r 97.7 0.00012 2.7E-09 62.7 6.5 78 204-281 115-203 (480)
160 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00013 2.9E-09 46.1 4.8 52 204-260 2-53 (53)
161 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00043 9.3E-09 50.0 7.2 74 204-279 7-90 (100)
162 KOG0115|consensus 97.5 0.00026 5.7E-09 58.7 5.8 89 162-265 5-94 (275)
163 KOG2314|consensus 97.5 0.0006 1.3E-08 62.6 8.6 79 109-187 57-142 (698)
164 KOG1995|consensus 97.4 0.00015 3.2E-09 63.1 3.4 82 202-283 65-156 (351)
165 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00069 1.5E-08 42.9 5.1 52 111-168 2-53 (53)
166 KOG2202|consensus 97.2 0.00014 2.9E-09 60.4 1.2 64 218-281 83-148 (260)
167 KOG2314|consensus 97.1 0.0013 2.9E-08 60.4 6.7 75 204-278 59-141 (698)
168 KOG1995|consensus 97.0 0.00069 1.5E-08 59.0 4.1 82 108-189 64-154 (351)
169 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.005 1.1E-07 44.5 7.3 75 110-186 6-89 (100)
170 KOG3152|consensus 96.9 0.00093 2E-08 55.5 3.8 72 109-180 73-157 (278)
171 PF08952 DUF1866: Domain of un 96.9 0.0038 8.3E-08 47.9 6.9 57 218-281 51-107 (146)
172 KOG1996|consensus 96.9 0.0027 5.9E-08 53.7 6.3 63 217-279 300-365 (378)
173 KOG2202|consensus 96.9 0.00051 1.1E-08 57.1 1.9 66 125-190 83-149 (260)
174 KOG3152|consensus 96.8 0.00052 1.1E-08 56.9 1.7 69 204-272 75-157 (278)
175 KOG1855|consensus 96.8 0.0023 4.9E-08 57.1 5.5 69 108-176 229-311 (484)
176 KOG1996|consensus 96.6 0.008 1.7E-07 51.0 7.1 66 124-189 300-367 (378)
177 KOG4849|consensus 96.6 0.0019 4.1E-08 55.9 3.2 77 18-99 80-159 (498)
178 PF08952 DUF1866: Domain of un 96.5 0.012 2.5E-07 45.3 7.0 73 15-101 24-106 (146)
179 KOG4849|consensus 96.5 0.0028 6E-08 55.0 4.0 77 111-187 81-160 (498)
180 KOG1855|consensus 96.5 0.0039 8.5E-08 55.6 4.9 67 202-268 230-311 (484)
181 PF10309 DUF2414: Protein of u 96.0 0.053 1.1E-06 35.2 6.7 53 111-171 6-62 (62)
182 KOG2591|consensus 96.0 0.014 3E-07 53.9 5.4 81 6-98 159-248 (684)
183 PF08675 RNA_bind: RNA binding 95.7 0.062 1.3E-06 36.9 6.5 55 112-173 10-64 (87)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.017 3.7E-07 46.7 4.5 68 109-176 6-80 (176)
185 KOG2416|consensus 95.6 0.011 2.4E-07 55.0 3.4 77 14-101 440-521 (718)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.058 1.3E-06 43.6 6.9 77 204-280 8-97 (176)
187 PF08675 RNA_bind: RNA binding 95.5 0.093 2E-06 36.1 6.7 56 204-265 9-64 (87)
188 PF15023 DUF4523: Protein of u 95.4 0.049 1.1E-06 41.4 5.7 74 201-280 84-161 (166)
189 KOG2416|consensus 95.4 0.012 2.6E-07 54.8 2.9 77 202-282 443-523 (718)
190 PF10309 DUF2414: Protein of u 95.4 0.052 1.1E-06 35.3 5.0 52 20-84 7-62 (62)
191 PF07576 BRAP2: BRCA1-associat 95.2 0.19 4.1E-06 37.1 8.3 65 206-270 16-81 (110)
192 KOG2591|consensus 95.0 0.08 1.7E-06 49.1 6.7 95 75-183 148-246 (684)
193 PF15023 DUF4523: Protein of u 94.9 0.11 2.4E-06 39.5 6.2 71 110-187 86-160 (166)
194 PF07292 NID: Nmi/IFP 35 domai 94.7 0.049 1.1E-06 38.2 3.8 65 65-131 1-73 (88)
195 PF04847 Calcipressin: Calcipr 94.7 0.1 2.2E-06 42.3 6.1 63 216-282 8-72 (184)
196 KOG0804|consensus 94.1 0.085 1.8E-06 47.7 4.8 68 203-270 74-142 (493)
197 KOG2068|consensus 94.0 0.043 9.4E-07 47.8 2.8 80 112-191 79-165 (327)
198 PF07576 BRAP2: BRCA1-associat 94.0 0.32 6.9E-06 35.9 6.9 69 16-91 10-81 (110)
199 PF11767 SET_assoc: Histone ly 93.5 0.64 1.4E-05 30.7 7.0 55 121-183 11-65 (66)
200 KOG4285|consensus 93.3 0.29 6.3E-06 42.1 6.4 73 204-282 198-271 (350)
201 KOG0804|consensus 93.1 0.85 1.8E-05 41.6 9.3 68 110-178 74-142 (493)
202 PF07292 NID: Nmi/IFP 35 domai 92.8 0.16 3.5E-06 35.6 3.5 71 154-225 1-74 (88)
203 KOG2068|consensus 92.6 0.047 1E-06 47.6 0.8 79 204-282 78-164 (327)
204 PF14111 DUF4283: Domain of un 91.3 0.24 5.2E-06 38.9 3.5 121 121-248 28-150 (153)
205 PF04847 Calcipressin: Calcipr 91.0 0.85 1.8E-05 37.1 6.4 61 123-188 8-70 (184)
206 PF10567 Nab6_mRNP_bdg: RNA-re 90.9 10 0.00022 32.9 13.7 158 108-266 13-214 (309)
207 KOG2135|consensus 88.8 0.28 6.1E-06 44.8 2.2 72 113-190 375-447 (526)
208 PF03880 DbpA: DbpA RNA bindin 88.3 1.9 4.1E-05 29.2 5.6 59 213-278 11-74 (74)
209 PF03880 DbpA: DbpA RNA bindin 87.9 3.2 6.9E-05 28.1 6.5 60 119-186 10-74 (74)
210 KOG2135|consensus 85.8 0.49 1.1E-05 43.3 2.0 70 206-280 375-445 (526)
211 PF11767 SET_assoc: Histone ly 85.3 7.9 0.00017 25.6 7.0 56 213-275 10-65 (66)
212 KOG4574|consensus 84.3 0.6 1.3E-05 45.8 1.9 74 205-282 300-375 (1007)
213 PF14111 DUF4283: Domain of un 82.8 1.5 3.2E-05 34.4 3.4 80 63-145 56-140 (153)
214 KOG2253|consensus 79.7 1.8 4E-05 41.4 3.2 69 109-185 39-107 (668)
215 KOG4285|consensus 79.5 5.9 0.00013 34.4 5.9 73 14-98 193-266 (350)
216 KOG2253|consensus 77.7 1.1 2.5E-05 42.7 1.3 69 202-277 39-107 (668)
217 KOG4574|consensus 77.6 1.7 3.7E-05 42.9 2.4 71 113-188 301-373 (1007)
218 PRK14548 50S ribosomal protein 75.9 12 0.00026 26.1 5.7 57 113-171 23-81 (84)
219 KOG4483|consensus 72.8 14 0.0003 33.4 6.6 54 110-169 391-445 (528)
220 TIGR03636 L23_arch archaeal ri 72.4 18 0.00039 24.8 5.7 57 113-171 16-74 (77)
221 KOG2318|consensus 70.8 19 0.00041 34.3 7.2 78 108-185 172-304 (650)
222 KOG4410|consensus 64.4 20 0.00043 31.0 5.6 47 111-161 331-377 (396)
223 PF03468 XS: XS domain; Inter 64.2 7.7 0.00017 28.9 2.9 50 112-163 10-68 (116)
224 KOG4410|consensus 62.5 9 0.0002 32.9 3.3 48 18-72 330-377 (396)
225 KOG4483|consensus 60.9 15 0.00032 33.3 4.4 68 2-82 376-445 (528)
226 KOG2891|consensus 59.5 18 0.00039 31.0 4.5 78 204-281 150-268 (445)
227 PF15513 DUF4651: Domain of un 58.5 22 0.00047 23.1 3.8 20 218-237 9-28 (62)
228 KOG2318|consensus 57.0 48 0.001 31.8 7.1 78 202-279 173-306 (650)
229 KOG1295|consensus 56.1 8.9 0.00019 34.5 2.3 68 19-89 8-77 (376)
230 KOG4350|consensus 53.5 12 0.00027 34.0 2.7 63 12-74 425-487 (620)
231 PF10567 Nab6_mRNP_bdg: RNA-re 51.1 26 0.00056 30.5 4.2 79 202-280 14-107 (309)
232 PF03468 XS: XS domain; Inter 50.3 19 0.00041 26.8 3.0 38 216-254 30-67 (116)
233 KOG4213|consensus 45.7 30 0.00065 27.8 3.5 57 110-170 111-169 (205)
234 KOG4019|consensus 45.7 16 0.00035 29.4 2.0 75 204-282 11-91 (193)
235 PTZ00191 60S ribosomal protein 44.1 86 0.0019 24.4 5.7 56 112-169 83-140 (145)
236 PF15513 DUF4651: Domain of un 41.8 68 0.0015 20.9 4.1 18 125-142 9-26 (62)
237 PF02714 DUF221: Domain of unk 38.3 46 0.001 29.6 4.2 57 65-133 1-57 (325)
238 PF02714 DUF221: Domain of unk 36.7 70 0.0015 28.5 5.1 56 154-225 1-56 (325)
239 KOG2295|consensus 36.3 6.2 0.00013 37.2 -1.8 69 110-178 231-300 (648)
240 KOG2891|consensus 33.6 60 0.0013 28.0 3.7 70 107-176 146-247 (445)
241 PF14893 PNMA: PNMA 31.5 44 0.00094 30.0 2.7 52 203-254 18-73 (331)
242 PF09707 Cas_Cas2CT1978: CRISP 31.4 1.2E+02 0.0027 21.2 4.4 51 14-69 21-71 (86)
243 KOG1295|consensus 30.8 67 0.0015 29.1 3.7 65 204-268 8-77 (376)
244 COG0445 GidA Flavin-dependent 30.8 2.1E+02 0.0045 27.8 7.1 79 65-145 239-336 (621)
245 KOG4213|consensus 27.1 94 0.002 25.1 3.6 55 204-262 112-169 (205)
246 KOG2295|consensus 27.1 9.5 0.00021 36.0 -2.1 67 204-270 232-300 (648)
247 PF14893 PNMA: PNMA 27.0 63 0.0014 29.0 3.0 53 111-163 19-74 (331)
248 COG0445 GidA Flavin-dependent 26.7 1.6E+02 0.0036 28.5 5.7 87 151-237 236-335 (621)
249 PF11823 DUF3343: Protein of u 24.7 1E+02 0.0023 20.5 3.1 27 244-270 2-28 (73)
250 PHA01632 hypothetical protein 24.4 56 0.0012 20.5 1.5 21 206-226 19-39 (64)
251 KOG4019|consensus 22.5 1.3E+02 0.0028 24.4 3.5 39 61-101 50-89 (193)
252 PRK11558 putative ssRNA endonu 20.3 2.4E+02 0.0053 20.2 4.3 54 14-72 23-76 (97)
253 KOG4008|consensus 20.2 60 0.0013 27.4 1.4 31 304-334 39-69 (261)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-53 Score=408.55 Aligned_cols=310 Identities=56% Similarity=0.883 Sum_probs=279.8
Q ss_pred ceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEE
Q psy12549 19 HNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIM 97 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~ 97 (336)
.+|||+|||+++||++|+++| .+|.+.+|++.++. .|++++|||||+|.+. ++|++|++.+++..+.|++|+|.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~---~t~~s~G~afV~F~~~--~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDS---VTRRSLGYGYVNFQNP--ADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcceEEEEEECCH--HHHHHHHHHhCCCEECCeeEEee
Confidence 379999999999999999999 77788999999988 4789999999999999 99999999999999999999999
Q ss_pred eccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q psy12549 98 WSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN 177 (336)
Q Consensus 98 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~ 177 (336)
|+..++........+|||+|||.++++++|+++|+.||.|.+|++..+..|+++|||||+|.+.++|.+|++.++|..+.
T Consensus 76 ~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 76 WSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred cccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 99888777777778999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred CeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHH
Q psy12549 178 SKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFA 256 (336)
Q Consensus 178 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a 256 (336)
|+.+.+....+..... .......++|||+|||.++++++|+++|+.||.|.++.+.. .++.++|+|||+|.+.++|
T Consensus 156 ~~~i~v~~~~~~~~~~---~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 156 DKEVYVGRFIKKHERE---AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred CceEEEeccccccccc---cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 9999998766554432 11233447899999999999999999999999999999987 6788899999999999999
Q ss_pred HHHHHHhCCceec----CEEEEEeecccchhhHHHHHHHHHHHHHHhhcCCCCceEEEecCCCCCCHHHHHHhcCCCCCe
Q psy12549 257 EKAVQAWNGKEVD----GKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTI 332 (336)
Q Consensus 257 ~~a~~~l~g~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V 332 (336)
.+|++.++|..+. |+.+.|.++..+.......................+++|||+||+..+++++|+++|++||.|
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i 312 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEI 312 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCe
Confidence 9999999999999 999999999888777666666666555555566778899999999999999999999999999
Q ss_pred eecC
Q psy12549 333 TSAK 336 (336)
Q Consensus 333 ~~vk 336 (336)
.+||
T Consensus 313 ~~~~ 316 (562)
T TIGR01628 313 TSAK 316 (562)
T ss_pred EEEE
Confidence 9875
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.5e-47 Score=343.64 Aligned_cols=261 Identities=22% Similarity=0.381 Sum_probs=226.6
Q ss_pred ccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
.++++|||+|||++++|++|+++| .+|.+.++++++++ .+|+++|||||+|.+. ++|.+|++.+||..+.|++|
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~---~~g~s~g~afV~f~~~--~~A~~Ai~~l~g~~l~g~~i 75 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK---VTGQSLGYGFVNYVRP--EDAEKAVNSLNGLRLQNKTI 75 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC---CCCccceEEEEEECcH--HHHHHHHhhcccEEECCeeE
Confidence 367899999999999999999999 77888999999987 4689999999999999 99999999999999999999
Q ss_pred EEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 95 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
.|.++.+... ....++|||+|||..+++++|+++|+.||.+..+.++.+. ++.++|||||+|.+.++|..|++.|||
T Consensus 76 ~v~~a~~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 76 KVSYARPSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred EEEeeccccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 9999865432 2345789999999999999999999999999999999886 678999999999999999999999999
Q ss_pred ceeCC--eEEEEeeccCchhhhHh---------------h----------------------------------------
Q psy12549 174 MLLNS--KIVFVGKFIPRKEREKE---------------L---------------------------------------- 196 (336)
Q Consensus 174 ~~~~~--~~i~v~~~~~~~~~~~~---------------~---------------------------------------- 196 (336)
..+.| .++.+.++......... .
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 98876 67788776533210000 0
Q ss_pred -----------h------------------ccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceE
Q psy12549 197 -----------G------------------EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGF 245 (336)
Q Consensus 197 -----------~------------------~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~ 245 (336)
. .......+|||+|||.++++++|+++|++||.|.+++++. .+|.++||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 0 0001112599999999999999999999999999999987 48999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 246 GFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 246 afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
|||+|.+.++|.+|+..|||..+.|+.|+|.|+..+..
T Consensus 314 aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 314 GFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999999999987753
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.8e-45 Score=343.89 Aligned_cols=303 Identities=18% Similarity=0.231 Sum_probs=238.7
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhc--CccccCCee
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTM--NFDALKGRP 93 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~--~~~~~~g~~ 93 (336)
|+++|+|+|||++++|++|+++| .+|.+.++.++++ +|||||+|.+. ++|+.|++.+ ++..+.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---------k~~afVef~~~--e~A~~Ai~~~~~~~~~l~g~~ 69 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---------KRQALVEFEDE--ESAKACVNFATSVPIYIRGQP 69 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---------CCEEEEEeCch--HHHHHHHHHhhcCCceEcCeE
Confidence 78899999999999999999999 7889999988864 47899999999 9999999864 678999999
Q ss_pred eEEEeccCCCCcC----------CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHH
Q psy12549 94 IRIMWSQRDPSLR----------KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEA 163 (336)
Q Consensus 94 i~v~~~~~~~~~~----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~ 163 (336)
|+|.|+....... .....+|+|+||+..+|+++|+++|+.||.|.+|.+.++. .+++|||+|.+.++
T Consensus 70 l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~ 146 (481)
T TIGR01649 70 AFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNS 146 (481)
T ss_pred EEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHH
Confidence 9999986532111 1122479999999999999999999999999999998754 24689999999999
Q ss_pred HHHHHHHhCCceeCC--eEEEEeeccCchhh--------------------h-----------Hh---------------
Q psy12549 164 ANKSIEKVNGMLLNS--KIVFVGKFIPRKER--------------------E-----------KE--------------- 195 (336)
Q Consensus 164 a~~a~~~l~~~~~~~--~~i~v~~~~~~~~~--------------------~-----------~~--------------- 195 (336)
|.+|++.|||..+.+ +.|.|.++.+..-. . ..
T Consensus 147 A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 226 (481)
T TIGR01649 147 AQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYS 226 (481)
T ss_pred HHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccc
Confidence 999999999999854 57888776542100 0 00
Q ss_pred --------------hh---------------------------ccccccceEEEcCCCC-CCcHHHHHHhhccCCceeEE
Q psy12549 196 --------------LG---------------------------EKAKLFTNVYIKNFGE-DFNDEKLKEMFEPYGTITSY 233 (336)
Q Consensus 196 --------------~~---------------------------~~~~~~~~l~V~nlp~-~~t~~~l~~~f~~~g~i~~~ 233 (336)
.+ ....+.++|||+|||. .+++++|+++|+.||.|.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~v 306 (481)
T TIGR01649 227 SHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERV 306 (481)
T ss_pred cCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 00 0012346899999997 69999999999999999999
Q ss_pred EEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhhHHHH-------H--HHHHHHHHHh-----
Q psy12549 234 RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL-------K--RRFEMLKIER----- 299 (336)
Q Consensus 234 ~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~-------~--~~~~~~~~~~----- 299 (336)
+++.. .+|+|||+|.+.++|..|+..|||..+.|+.|+|.++.......... . ..+......+
T Consensus 307 ki~~~---~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~ 383 (481)
T TIGR01649 307 KFMKN---KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPG 383 (481)
T ss_pred EEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcc
Confidence 99864 36899999999999999999999999999999999986542111000 0 0000000000
Q ss_pred -----hcCCCCceEEEecCCCCCCHHHHHHhcCCCCC--eeecC
Q psy12549 300 -----LNRYQGVNLYVKNLDDSIDDERLRKEFTPFGT--ITSAK 336 (336)
Q Consensus 300 -----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~--V~~vk 336 (336)
...+++.+|+|+|||..+++++|+++|++||. |.+||
T Consensus 384 ~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 384 SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 01245678999999999999999999999998 77664
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.1e-44 Score=331.73 Aligned_cols=294 Identities=17% Similarity=0.230 Sum_probs=239.8
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccC-Ceee
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALK-GRPI 94 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~-g~~i 94 (336)
..++|||+|||++++|++|+++| .++.+.++++++|. +|+++|||||+|.+. ++|++|++.+|+..+. |+.+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~----sG~sRGfaFV~F~~~--e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF----SGQNRGYAFVTFCGK--EEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC----CCCccceEEEEeCCH--HHHHHHHHHcCCCeecCCccc
Confidence 34789999999999999999999 77788899999984 689999999999999 9999999999998885 7887
Q ss_pred EEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 95 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS-ILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~--~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
.+.++.. .++|||+|||.++++++|.+.|++++. +..+.+.... .++++|||||+|.+.++|..|++.|
T Consensus 131 ~V~~S~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 131 GVCISVD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred ccccccc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 7776532 478999999999999999999999974 4444444332 4678999999999999999999988
Q ss_pred CC--ceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccC--CceeEEEEeCCCCccceEEE
Q psy12549 172 NG--MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY--GTITSYRVMNNDGKSRGFGF 247 (336)
Q Consensus 172 ~~--~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--g~i~~~~i~~~~~~~~g~af 247 (336)
+. ..+.|+.|.|.|+.+....... .....++|||+|||.++++++|+++|+.| |.|.++.++ ++|||
T Consensus 203 ~~gki~l~Gr~I~VdwA~p~~~~d~~---~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAF 273 (578)
T TIGR01648 203 MPGRIQLWGHVIAVDWAEPEEEVDED---VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAF 273 (578)
T ss_pred hccceEecCceEEEEeeccccccccc---ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEE
Confidence 64 4688999999998876533221 12233689999999999999999999999 999999876 67999
Q ss_pred EEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhhHHH----------HHHHHHHHHHHhhcCCCCceEEEecCCCCC
Q psy12549 248 VAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE----------LKRRFEMLKIERLNRYQGVNLYVKNLDDSI 317 (336)
Q Consensus 248 V~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 317 (336)
|+|.+.++|.+|++.|||..|.|+.|+|.|+.+....... ........+-.....+...++++.|+++..
T Consensus 274 VeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~ 353 (578)
T TIGR01648 274 VHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHP 353 (578)
T ss_pred EEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccc
Confidence 9999999999999999999999999999999876433110 000000011111223456789999999999
Q ss_pred CHHHHHHhcCCCCCee
Q psy12549 318 DDERLRKEFTPFGTIT 333 (336)
Q Consensus 318 t~~~l~~~F~~~G~V~ 333 (336)
+++.+.++|..+|.|.
T Consensus 354 ~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 354 PYAPSLHFPRMPGPIR 369 (578)
T ss_pred cccchhhccccCcccc
Confidence 9999999999999874
No 5
>KOG0145|consensus
Probab=100.00 E-value=1.3e-43 Score=285.52 Aligned_cols=262 Identities=23% Similarity=0.368 Sum_probs=230.2
Q ss_pred CccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC
Q psy12549 13 GIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG 91 (336)
Q Consensus 13 ~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g 91 (336)
+....++||+|.-||..||++|+|++| +.|+++++++++|+ .+|+|.||+||.|-++ ++|++|+..+||..+..
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---itGqSLGYGFVNYv~p--~DAe~AintlNGLrLQ~ 110 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYVRP--KDAEKAINTLNGLRLQN 110 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---ccccccccceeeecCh--HHHHHHHhhhcceeecc
Confidence 357889999999999999999999999 77899999999999 6999999999999999 99999999999999999
Q ss_pred eeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHH
Q psy12549 92 RPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 92 ~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~ 170 (336)
+.|+|+++.+. .......+|||.+||..+|..||.++|++||.|..-++..|. +|.++|.+||.|+...+|..|+..
T Consensus 111 KTIKVSyARPS--s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 111 KTIKVSYARPS--SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred ceEEEEeccCC--hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 99999997554 344566889999999999999999999999998888888887 899999999999999999999999
Q ss_pred hCCceeCC--eEEEEeeccCchhhhHhh-----------------h----------------------------------
Q psy12549 171 VNGMLLNS--KIVFVGKFIPRKEREKEL-----------------G---------------------------------- 197 (336)
Q Consensus 171 l~~~~~~~--~~i~v~~~~~~~~~~~~~-----------------~---------------------------------- 197 (336)
|||..-.| -+|.|.++..+....... .
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 99987654 578887776443211000 0
Q ss_pred ----ccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCE
Q psy12549 198 ----EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271 (336)
Q Consensus 198 ----~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~ 271 (336)
......-+|||.||..++++.-|+++|.+||.|..+++++ .+.+.+||+||.+.+.++|..|+..|||..++++
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 0001115799999999999999999999999999999999 6688899999999999999999999999999999
Q ss_pred EEEEeecccc
Q psy12549 272 ILYVGRAQKK 281 (336)
Q Consensus 272 ~l~v~~~~~~ 281 (336)
.|.|+|...+
T Consensus 349 vLQVsFKtnk 358 (360)
T KOG0145|consen 349 VLQVSFKTNK 358 (360)
T ss_pred EEEEEEecCC
Confidence 9999997765
No 6
>KOG0123|consensus
Probab=100.00 E-value=3e-43 Score=313.16 Aligned_cols=298 Identities=59% Similarity=0.883 Sum_probs=274.9
Q ss_pred ceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEE
Q psy12549 19 HNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIM 97 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~ 97 (336)
..|||| +++||..|.+.| ..+.+.++++.++. + +.|||||.|.++ ++|++|++++|...+.|++|+|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-----t-slgy~yvnf~~~--~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-----T-SLGYAYVNFQQP--ADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-----C-ccceEEEecCCH--HHHHHHHHHcCCcccCCcEEEee
Confidence 358888 999999999999 77788999999966 2 999999999999 99999999999999999999999
Q ss_pred eccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q psy12549 98 WSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN 177 (336)
Q Consensus 98 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~ 177 (336)
|+..++.. +||.||+++++.++|...|+.||+|.+|++..+..| ++|| ||+|++++.|.+|+..+||..+.
T Consensus 71 ~s~rd~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 71 WSQRDPSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLN 141 (369)
T ss_pred hhccCCce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccC
Confidence 99988765 999999999999999999999999999999999988 9999 99999999999999999999999
Q ss_pred CeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHH
Q psy12549 178 SKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFA 256 (336)
Q Consensus 178 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a 256 (336)
|++|.|....++..+.............+++.|++.+.+++.|.+.|+.+|+|..+.++. ..+.+++|+||.|.++++|
T Consensus 142 ~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 142 GKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDA 221 (369)
T ss_pred CCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHH
Confidence 999999998888777655555555567899999999999999999999999999999998 7777899999999999999
Q ss_pred HHHHHHhCCceecCEEEEEeecccchhhHHHHHHHHHHHHHHhhcCCCCceEEEecCCCCCCHHHHHHhcCCCCCeeecC
Q psy12549 257 EKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 257 ~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~vk 336 (336)
..|++.|++..+.|..+.|..+..+.+........+...........+..+|+|+|++..++.+.|++.|+.||+|.++|
T Consensus 222 ~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~k 301 (369)
T KOG0123|consen 222 KKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAK 301 (369)
T ss_pred HHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEE
Confidence 99999999999999999999999988877777777777777777778889999999999999999999999999999864
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.3e-42 Score=328.97 Aligned_cols=272 Identities=32% Similarity=0.479 Sum_probs=237.6
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
..++|||+|||+++++++|+++| .+|.+.++++..+. +|+++|||||+|.+. ++|.+|++.+||..+.|+.|.
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~----~g~skg~afV~F~~~--e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE----NGKSRGYGFVHFEKE--ESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC----CCCcccEEEEEECCH--HHHHHHHHHhcccEecCceEE
Confidence 35689999999999999999999 77788999998876 478999999999999 999999999999999999999
Q ss_pred EEeccCCCCc---CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy12549 96 IMWSQRDPSL---RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172 (336)
Q Consensus 96 v~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~ 172 (336)
+......... .....++|||+|||.++|+++|+++|+.||.|.++.+..+..|.++|||||.|.+.++|.+|++.++
T Consensus 161 v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 161 VGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred EeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 9765443222 2334578999999999999999999999999999999999889999999999999999999999999
Q ss_pred CceeC----CeEEEEeeccCchhhhHhhh----------ccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-
Q psy12549 173 GMLLN----SKIVFVGKFIPRKEREKELG----------EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN- 237 (336)
Q Consensus 173 ~~~~~----~~~i~v~~~~~~~~~~~~~~----------~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~- 237 (336)
+..+. |+.+.+.++..+..+..... ......++|||+||+..+++++|+++|+.||.|.+++++.
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d 320 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD 320 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC
Confidence 99999 99999988876654421111 1123346799999999999999999999999999999988
Q ss_pred CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhhHHHHHHHHHH
Q psy12549 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEM 294 (336)
Q Consensus 238 ~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 294 (336)
.+|.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++..+..+.......+.+
T Consensus 321 ~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q 377 (562)
T TIGR01628 321 EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQ 377 (562)
T ss_pred CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999888776665555543
No 8
>KOG0117|consensus
Probab=100.00 E-value=2.2e-42 Score=297.82 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=221.7
Q ss_pred ceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccC-CeeeEE
Q psy12549 19 HNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALK-GRPIRI 96 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~-g~~i~v 96 (336)
..||||.||.++.|++|..+| +.+.+-++++++|+ .+|.+||||||.|.+. ++|++|++.||+.+|. |+.|.|
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~---~sG~nRGYAFVtf~~K--e~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP---FSGDNRGYAFVTFCTK--EEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecc---cCCCCcceEEEEeecH--HHHHHHHHHhhCccccCCCEeEE
Confidence 359999999999999999999 77799999999998 4799999999999999 9999999999999885 899999
Q ss_pred EeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 97 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS-ILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~--~~~~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
+.+..+ ++|||+|||.+.++++|.+.+++.++ |..|.++.++ ..+++|||||+|.+...|..|...|-.
T Consensus 159 c~Svan--------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 159 CVSVAN--------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred EEeeec--------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 988654 67999999999999999999999986 7778888876 457899999999999999999988744
Q ss_pred --ceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeC
Q psy12549 174 --MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYE 251 (336)
Q Consensus 174 --~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~ 251 (336)
..++|+.+.|.|+.+..........+. ..|||+||+.++|+|.|+++|+.||.|++|+.+ +.||||+|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~V---KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~------rDYaFVHf~ 301 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKV---KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP------RDYAFVHFA 301 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhhe---eeeeeeccchhhhHHHHHHHHHhccceEEeecc------cceeEEeec
Confidence 457999999999999877665533333 569999999999999999999999999999887 669999999
Q ss_pred CHHHHHHHHHHhCCceecCEEEEEeecccchhhHHH
Q psy12549 252 SPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287 (336)
Q Consensus 252 ~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~ 287 (336)
++++|.+|++.+||..++|..|.|.+|++..+....
T Consensus 302 eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 302 EREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred chHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 999999999999999999999999999998766554
No 9
>KOG0127|consensus
Probab=100.00 E-value=7.1e-40 Score=288.54 Aligned_cols=304 Identities=21% Similarity=0.324 Sum_probs=246.2
Q ss_pred ceeeeecCchhhhhhhHHhhhccc-CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEE
Q psy12549 19 HNVATRELSAKVVEGVSRSLSSLI-DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIM 97 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f~~~-~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~ 97 (336)
.+|+|++||++++.++|.++|+.. ++...-++.+.+ ++.+|||+||.|.-. ++++.|+....+..|.|+.|++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~g---s~~~RGfgfVtFam~--ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKG---SSEKRGFGFVTFAME--EDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCC---cccccCccceeeehH--hHHHHHHHHhhcCcccceecccc
Confidence 689999999999999999999655 666778888775 578999999999999 99999999999999999999999
Q ss_pred eccCCCCcC------------------------CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccE
Q psy12549 98 WSQRDPSLR------------------------KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGY 153 (336)
Q Consensus 98 ~~~~~~~~~------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~ 153 (336)
++....+.. ......|+|+|||..+.+.+|+.+|+.||.|.++.|++.+.|...||
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF 160 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF 160 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccce
Confidence 877654422 01145899999999999999999999999999999998888887899
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhHhh-------------------------------------
Q psy12549 154 GFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKEL------------------------------------- 196 (336)
Q Consensus 154 afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~------------------------------------- 196 (336)
|||+|....+|..|++.+|+..++||+|.|.|+.++..-....
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~e 240 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSE 240 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccc
Confidence 9999999999999999999999999999999987643211000
Q ss_pred ------h---------------------------------------ccccccceEEEcCCCCCCcHHHHHHhhccCCcee
Q psy12549 197 ------G---------------------------------------EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231 (336)
Q Consensus 197 ------~---------------------------------------~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~ 231 (336)
+ .......+|||+|||+++|+++|.+.|++||+|.
T Consensus 241 deEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ 320 (678)
T KOG0127|consen 241 DEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVK 320 (678)
T ss_pred ccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccce
Confidence 0 0000016899999999999999999999999999
Q ss_pred EEEEeC--CCCccceEEEEEeCCHHHHHHHHHHh-----CC-ceecCEEEEEeecccchhhHHHHHH-------------
Q psy12549 232 SYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW-----NG-KEVDGKILYVGRAQKKAERTQELKR------------- 290 (336)
Q Consensus 232 ~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l-----~g-~~~~g~~l~v~~~~~~~~~~~~~~~------------- 290 (336)
++.++. .++.+.|.|||.|.+..+|..||... .| ..+.||.|.|..+..+.....-...
T Consensus 321 ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLy 400 (678)
T KOG0127|consen 321 YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLY 400 (678)
T ss_pred eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCcccee
Confidence 998887 89999999999999999999999876 23 6689999999999776543222110
Q ss_pred --------------------------HHHHHHHHhh----cCCCCceEEEecCCCCCCHHHHHHhcC
Q psy12549 291 --------------------------RFEMLKIERL----NRYQGVNLYVKNLDDSIDDERLRKEFT 327 (336)
Q Consensus 291 --------------------------~~~~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~F~ 327 (336)
.+........ -..+.+.|+|+|||..++...|..+..
T Consensus 401 La~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~ 467 (678)
T KOG0127|consen 401 LAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLR 467 (678)
T ss_pred eeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHH
Confidence 0111111111 112457799999999999999887654
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.9e-37 Score=290.43 Aligned_cols=260 Identities=22% Similarity=0.268 Sum_probs=216.6
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
...+.++|||+|||..+++++|+++| .+|.+..|+++.++ .+|.++|||||+|.+. ++|.+|+. ++|..+.|+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~---~~~~skg~afVeF~~~--e~A~~Al~-l~g~~~~g~ 158 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDR---NSRRSKGVAYVEFYDV--ESVIKALA-LTGQMLLGR 158 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecC---CCCCcceEEEEEECCH--HHHHHHHH-hCCCEECCe
Confidence 34567899999999999999999999 77788899999987 4789999999999999 99999998 999999999
Q ss_pred eeEEEeccCCCC----------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCH
Q psy12549 93 PIRIMWSQRDPS----------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161 (336)
Q Consensus 93 ~i~v~~~~~~~~----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~ 161 (336)
+|.|.++..... ......++|||+|||..+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.
T Consensus 159 ~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 159 PIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred eeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 999987543211 111225789999999999999999999999999999999987 568999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEeeccCchhhh----------------------------H-----h---------h---
Q psy12549 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKERE----------------------------K-----E---------L--- 196 (336)
Q Consensus 162 ~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~----------------------------~-----~---------~--- 196 (336)
++|.+|+..|+|..+.|+.|.|.++....... . . .
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSK 318 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccch
Confidence 99999999999999999999999954211000 0 0 0
Q ss_pred -------------------------------------hccccccceEEEcCCCCCCc----------HHHHHHhhccCCc
Q psy12549 197 -------------------------------------GEKAKLFTNVYIKNFGEDFN----------DEKLKEMFEPYGT 229 (336)
Q Consensus 197 -------------------------------------~~~~~~~~~l~V~nlp~~~t----------~~~l~~~f~~~g~ 229 (336)
........+|+|.|+....+ .+||++.|++||.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~ 398 (457)
T TIGR01622 319 IALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGG 398 (457)
T ss_pred hhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCC
Confidence 00012235688888854433 3689999999999
Q ss_pred eeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 230 ITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 230 i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
|..+.+.. ....|++||+|.++++|.+|+..|||..|+|+.|.+.|....
T Consensus 399 v~~v~v~~--~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 399 VVHIYVDT--KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred eeEEEEeC--CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99998874 235789999999999999999999999999999999998755
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4e-37 Score=292.20 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=204.0
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhccc-CCce------EEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCc
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSSLI-DGNT------VKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNF 86 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~~~-~~~~------v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~ 86 (336)
.....++|||+|||+.+|+++|+++|... .... ...+.+ ...+.++|||||+|.+. ++|..|+. |+|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~---~~~~~~kg~afVeF~~~--e~A~~Al~-l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSS---VNINKEKNFAFLEFRTV--EEATFAMA-LDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEE---EEECCCCCEEEEEeCCH--HHHhhhhc-CCC
Confidence 34567889999999999999999999431 1100 001110 01345779999999999 99999996 999
Q ss_pred cccCCeeeEEEeccCCCC---------------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeE
Q psy12549 87 DALKGRPIRIMWSQRDPS---------------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS 139 (336)
Q Consensus 87 ~~~~g~~i~v~~~~~~~~---------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 139 (336)
..+.|++|.|........ ......++|||+|||..+++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 999999999964322110 01123468999999999999999999999999999
Q ss_pred EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhHh---------------h-----hc
Q psy12549 140 CKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE---------------L-----GE 198 (336)
Q Consensus 140 ~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~---------------~-----~~ 198 (336)
+.++.+. +|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++......... . ..
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQI 404 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccc
Confidence 9999986 7889999999999999999999999999999999999887532211000 0 00
Q ss_pred cccccceEEEcCCCCC--C--------cHHHHHHhhccCCceeEEEEeCC-----CCccceEEEEEeCCHHHHHHHHHHh
Q psy12549 199 KAKLFTNVYIKNFGED--F--------NDEKLKEMFEPYGTITSYRVMNN-----DGKSRGFGFVAYESPEFAEKAVQAW 263 (336)
Q Consensus 199 ~~~~~~~l~V~nlp~~--~--------t~~~l~~~f~~~g~i~~~~i~~~-----~~~~~g~afV~F~~~~~a~~a~~~l 263 (336)
...+...|++.|+... + ..++|++.|+.||.|..|.|++. ++.+.|+|||+|.+.++|.+|+..|
T Consensus 405 ~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~l 484 (509)
T TIGR01642 405 GGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGM 484 (509)
T ss_pred cCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHc
Confidence 1123467899998632 1 23689999999999999999863 2345789999999999999999999
Q ss_pred CCceecCEEEEEeeccc
Q psy12549 264 NGKEVDGKILYVGRAQK 280 (336)
Q Consensus 264 ~g~~~~g~~l~v~~~~~ 280 (336)
||..|.|+.|.+.|...
T Consensus 485 nGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 485 NGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CCCEECCeEEEEEEeCH
Confidence 99999999999999764
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.6e-36 Score=283.75 Aligned_cols=250 Identities=15% Similarity=0.193 Sum_probs=206.5
Q ss_pred ceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC--eeeE
Q psy12549 19 HNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG--RPIR 95 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g--~~i~ 95 (336)
.+|+|+||+.++|+++|+++| .+|.+..+.+.++. ..|+|||+|.+. ++|.+|++.|||..+.+ +.++
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~-------~~~~afVef~~~--~~A~~A~~~Lng~~i~~~~~~l~ 167 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN-------NVFQALVEFESV--NSAQHAKAALNGADIYNGCCTLK 167 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC-------CceEEEEEECCH--HHHHHHHHHhcCCcccCCceEEE
Confidence 479999999999999999999 77788899887755 247899999999 99999999999999865 4777
Q ss_pred EEeccCCCC----------------c----------------C-------------------------------------
Q psy12549 96 IMWSQRDPS----------------L----------------R------------------------------------- 106 (336)
Q Consensus 96 v~~~~~~~~----------------~----------------~------------------------------------- 106 (336)
|.|+....- . .
T Consensus 168 v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR01649 168 IEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGP 247 (481)
T ss_pred EEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccC
Confidence 777543110 0 0
Q ss_pred ------------------------CCCCceEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCH
Q psy12549 107 ------------------------KSGVGNVFIKNLDK-SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETE 161 (336)
Q Consensus 107 ------------------------~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~ 161 (336)
....++|||+|||+ .+|+++|+++|+.||.|.+|+++.++ +|+|||+|.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~ 323 (481)
T TIGR01649 248 PSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADP 323 (481)
T ss_pred CCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCH
Confidence 01235899999997 69999999999999999999999873 67999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEeeccCchhhhHh-------------h----------------hccccccceEEEcCCC
Q psy12549 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE-------------L----------------GEKAKLFTNVYIKNFG 212 (336)
Q Consensus 162 ~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~-------------~----------------~~~~~~~~~l~V~nlp 212 (336)
++|..|+..|||..+.|+.|.|.++......... . .....+..+|||.|||
T Consensus 324 ~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp 403 (481)
T TIGR01649 324 YQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIP 403 (481)
T ss_pred HHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCC
Confidence 9999999999999999999999887543110000 0 0001234689999999
Q ss_pred CCCcHHHHHHhhccCCc--eeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEE------EEEeecccc
Q psy12549 213 EDFNDEKLKEMFEPYGT--ITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI------LYVGRAQKK 281 (336)
Q Consensus 213 ~~~t~~~l~~~f~~~g~--i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~------l~v~~~~~~ 281 (336)
..+++++|+++|+.||. +..+++....+..+++|||+|.+.++|.+|+..|||..+.|+. |+|.|++++
T Consensus 404 ~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 404 LSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999999999998 8888887644446899999999999999999999999999984 999998764
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.1e-36 Score=276.26 Aligned_cols=164 Identities=27% Similarity=0.566 Sum_probs=149.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..+|||+|||..+++++|+++|+.||+|.+|+++.++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4789999999999999999999999999999999987 789999999999999999999999999999999999999876
Q ss_pred chhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 189 RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
.... ...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|+|||+|.+.++|.+|++.|||.
T Consensus 83 ~~~~--------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 83 SSDS--------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred cccc--------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 5421 1236799999999999999999999999999998876 46788999999999999999999999999
Q ss_pred eecC--EEEEEeecccc
Q psy12549 267 EVDG--KILYVGRAQKK 281 (336)
Q Consensus 267 ~~~g--~~l~v~~~~~~ 281 (336)
.+.| ..|.|.++...
T Consensus 155 ~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 155 TPSGCTEPITVKFANNP 171 (352)
T ss_pred ccCCCceeEEEEECCCC
Confidence 9987 67899887544
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.9e-36 Score=279.50 Aligned_cols=168 Identities=21% Similarity=0.385 Sum_probs=150.2
Q ss_pred ccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
....+|||+|||++++|++|+++| .+|.+.++++++++ .+|+++|||||+|.+. ++|+.|++.+||..+.|+.|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~---~TgkskGfAFVeF~s~--e~A~~Ai~~lnG~~i~GR~I 179 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---ATGKHKGFAFVEYEVP--EAAQLALEQMNGQMLGGRNI 179 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecC---CCCCcCCeEEEEeCcH--HHHHHHHHhcCCeEEeccee
Confidence 345679999999999999999999 78899999999987 5799999999999999 99999999999999999999
Q ss_pred EEEeccCCCCc---------CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHH
Q psy12549 95 RIMWSQRDPSL---------RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAA 164 (336)
Q Consensus 95 ~v~~~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a 164 (336)
+|.++...+.. .....++|||+|||+++++++|+++|+.||.|.++++.+++ +|.++|||||+|.+.++|
T Consensus 180 kV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 180 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred eecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 99865432211 11234689999999999999999999999999999999987 678999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEeeccC
Q psy12549 165 NKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 165 ~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.+|+..||+..++|+.|.|.++.+
T Consensus 260 ~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 260 SEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999999999987663
No 15
>KOG0148|consensus
Probab=100.00 E-value=2.1e-35 Score=239.42 Aligned_cols=223 Identities=25% Similarity=0.475 Sum_probs=186.3
Q ss_pred CceeeeecCchhhhhhhHHhhhccc-CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEE
Q psy12549 18 KHNVATRELSAKVVEGVSRSLSSLI-DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI 96 (336)
Q Consensus 18 ~~~v~v~~lp~~~~e~~l~~~f~~~-~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v 96 (336)
-|+|||+||+.++||+.|..+|+.+ .+...+++.+. +.|
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------------~~v 45 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------------LKV 45 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------------hcc
Confidence 4669999999999999999999554 66677776642 112
Q ss_pred EeccCCCC---cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhC
Q psy12549 97 MWSQRDPS---LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVN 172 (336)
Q Consensus 97 ~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~ 172 (336)
.|+..... .....--.+||+.|.+.++-++|++.|.+||+|.++++++|. ++++|||+||.|.+.++|+.|+..||
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC
Confidence 22211110 111112469999999999999999999999999999999998 89999999999999999999999999
Q ss_pred CceeCCeEEEEeeccCchhhh--------HhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccce
Q psy12549 173 GMLLNSKIVFVGKFIPRKERE--------KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRG 244 (336)
Q Consensus 173 ~~~~~~~~i~v~~~~~~~~~~--------~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g 244 (336)
|.=|++|.|+..|+..+.... .-........++||++|++..+++++|++.|++||+|.+|++.+. +|
T Consensus 126 GqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qG 201 (321)
T KOG0148|consen 126 GQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QG 201 (321)
T ss_pred CeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cc
Confidence 999999999999998776321 112233455689999999999999999999999999999999986 89
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhh
Q psy12549 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284 (336)
Q Consensus 245 ~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 284 (336)
||||+|.+.|+|.+||..+||..+.|..+++.|.+.....
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 9999999999999999999999999999999998766543
No 16
>KOG0117|consensus
Probab=100.00 E-value=2.5e-35 Score=254.40 Aligned_cols=242 Identities=23% Similarity=0.317 Sum_probs=197.0
Q ss_pred EEEeCCcchhhHHHHHhhcCccccC---CeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEE
Q psy12549 66 LVQLGQPYMLDTERALDTMNFDALK---GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKV 142 (336)
Q Consensus 66 fV~f~~~~~~~A~~A~~~~~~~~~~---g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~ 142 (336)
.-...+. ++|.+||.+..+..+. |+.=.=-+++.-........+.|||++||.++.|++|.-+|++.|+|.++++
T Consensus 38 ~~~~~~~--eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL 115 (506)
T KOG0117|consen 38 VAGVQSE--EAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL 115 (506)
T ss_pred ccccccH--HHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEE
Confidence 3334457 8999999877765331 1100000000011112244678999999999999999999999999999999
Q ss_pred eeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHH
Q psy12549 143 AQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLN-SKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220 (336)
Q Consensus 143 ~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l 220 (336)
++|+ +|.++|||||.|.+.++|+.|++.||+.+|. |+.|.|..+... +.|||+|+|..+++++|
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan--------------~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN--------------CRLFIGNIPKTKKKEEI 181 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec--------------ceeEeccCCccccHHHH
Confidence 9996 9999999999999999999999999999984 899988776544 88999999999999999
Q ss_pred HHhhccCCc-eeEEEEeC---CCCccceEEEEEeCCHHHHHHHHHHhCCce--ecCEEEEEeecccchhhHHHHHHHHHH
Q psy12549 221 KEMFEPYGT-ITSYRVMN---NDGKSRGFGFVAYESPEFAEKAVQAWNGKE--VDGKILYVGRAQKKAERTQELKRRFEM 294 (336)
Q Consensus 221 ~~~f~~~g~-i~~~~i~~---~~~~~~g~afV~F~~~~~a~~a~~~l~g~~--~~g~~l~v~~~~~~~~~~~~~~~~~~~ 294 (336)
.+.+++.++ |.+|.+.. +..++||||||+|.++..|..|.++|-... +.|..+.|+||.++.........+.
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~V-- 259 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKV-- 259 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhhe--
Confidence 999999886 77777766 667899999999999999999998885444 5899999999999977666533322
Q ss_pred HHHHhhcCCCCceEEEecCCCCCCHHHHHHhcCCCCCeeecC
Q psy12549 295 LKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 295 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~vk 336 (336)
..|||+||+.++|+|.|+++|++||.|++||
T Consensus 260 -----------KvLYVRNL~~~tTeE~lk~~F~~~G~veRVk 290 (506)
T KOG0117|consen 260 -----------KVLYVRNLMESTTEETLKKLFNEFGKVERVK 290 (506)
T ss_pred -----------eeeeeeccchhhhHHHHHHHHHhccceEEee
Confidence 3699999999999999999999999999987
No 17
>KOG0144|consensus
Probab=100.00 E-value=8e-36 Score=256.26 Aligned_cols=264 Identities=22% Similarity=0.363 Sum_probs=225.5
Q ss_pred CCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccc-c
Q psy12549 12 EGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDA-L 89 (336)
Q Consensus 12 ~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~-~ 89 (336)
+..+...-.+||+.+|.+++|.|||++| .++.|.+|.+++|+ .||.++|||||.|++. ++|.+|+..|++.. +
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk---~t~~s~gcCFv~~~tr--k~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDK---STGQSKGCCFVKYYTR--KEADEAINALHNQKTL 102 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccc---ccCcccceEEEEeccH--HHHHHHHHHhhccccc
Confidence 3334445679999999999999999999 77788999999999 6899999999999999 99999999999864 4
Q ss_pred C--CeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHH
Q psy12549 90 K--GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167 (336)
Q Consensus 90 ~--g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a 167 (336)
- .++|.|+++..+... ..+.++|||+.|+..++|.+++++|++||.|++|.|.+++.+.++|||||+|.+.+.|..|
T Consensus 103 pG~~~pvqvk~Ad~E~er-~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERER-IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred CCCCcceeecccchhhhc-cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHH
Confidence 3 388999998765432 2446889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCce-eCC--eEEEEeeccCchhhhHhhhccc---------------ccc--------------------------
Q psy12549 168 IEKVNGML-LNS--KIVFVGKFIPRKEREKELGEKA---------------KLF-------------------------- 203 (336)
Q Consensus 168 ~~~l~~~~-~~~--~~i~v~~~~~~~~~~~~~~~~~---------------~~~-------------------------- 203 (336)
++.|||.. +.| .+|.|+|+++.+++........ ...
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~ 261 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG 261 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc
Confidence 99999964 554 7889999887655422111000 000
Q ss_pred --------------------------------------------------------------------------------
Q psy12549 204 -------------------------------------------------------------------------------- 203 (336)
Q Consensus 204 -------------------------------------------------------------------------------- 203 (336)
T Consensus 262 g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t 341 (510)
T KOG0144|consen 262 GLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGT 341 (510)
T ss_pred cccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy12549 204 -------------------------------------------------------------------------------- 203 (336)
Q Consensus 204 -------------------------------------------------------------------------------- 203 (336)
T Consensus 342 ~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eG 421 (510)
T KOG0144|consen 342 PANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEG 421 (510)
T ss_pred chhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccC
Confidence
Q ss_pred ---ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 204 ---TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 204 ---~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
..+||.+||.+.-+.+|...|..||.|...++.. .++-++-|+||.|++..+|..||..|||..+++++++|...
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk 501 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLK 501 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEee
Confidence 5699999999999999999999999999776655 78888999999999999999999999999999999999886
Q ss_pred ccc
Q psy12549 279 QKK 281 (336)
Q Consensus 279 ~~~ 281 (336)
..+
T Consensus 502 ~~~ 504 (510)
T KOG0144|consen 502 RDR 504 (510)
T ss_pred ecc
Confidence 655
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.4e-34 Score=268.91 Aligned_cols=235 Identities=21% Similarity=0.309 Sum_probs=188.8
Q ss_pred hhHHHHHhhcCccccCCeeeEEEeccCC---CCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcc
Q psy12549 75 LDTERALDTMNFDALKGRPIRIMWSQRD---PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK 151 (336)
Q Consensus 75 ~~A~~A~~~~~~~~~~g~~i~v~~~~~~---~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 151 (336)
++|.+|+.++++..+........+..+. ........++|||+|||.++++++|+++|++||.|.++++++|.+|.++
T Consensus 20 ~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sR 99 (578)
T TIGR01648 20 EAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNR 99 (578)
T ss_pred HHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCcc
Confidence 7889999989887664433322222111 1112234589999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCc-
Q psy12549 152 GYGFVHFETEEAANKSIEKVNGMLLN-SKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT- 229 (336)
Q Consensus 152 g~afV~F~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~- 229 (336)
|||||+|.+.++|++|++.||+..+. ++.+.+..+.. .++|||+|||.++++++|.+.|++++.
T Consensus 100 GfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~--------------~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 100 GYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD--------------NCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc--------------CceeEeecCCcchhhHHHHHHhhcccCC
Confidence 99999999999999999999999885 77777755432 278999999999999999999999864
Q ss_pred eeEEEEeC---CCCccceEEEEEeCCHHHHHHHHHHhCC--ceecCEEEEEeecccchhhHHHHHHHHHHHHHHhhcCCC
Q psy12549 230 ITSYRVMN---NDGKSRGFGFVAYESPEFAEKAVQAWNG--KEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQ 304 (336)
Q Consensus 230 i~~~~i~~---~~~~~~g~afV~F~~~~~a~~a~~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (336)
+..+.+.. ..++++|||||+|.++++|.+|++.|+. ..+.|+.|.|.|+.++...... ....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------VMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc-------------cccc
Confidence 44444433 4567899999999999999999998864 3578999999999876432211 1112
Q ss_pred CceEEEecCCCCCCHHHHHHhcCCC--CCeeecC
Q psy12549 305 GVNLYVKNLDDSIDDERLRKEFTPF--GTITSAK 336 (336)
Q Consensus 305 ~~~l~v~nlp~~~t~~~l~~~F~~~--G~V~~vk 336 (336)
..+|||+|||..+++++|+++|++| |+|.+|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~ 266 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVK 266 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEE
Confidence 3689999999999999999999999 9999874
No 19
>KOG0145|consensus
Probab=100.00 E-value=5.5e-34 Score=229.89 Aligned_cols=221 Identities=29% Similarity=0.560 Sum_probs=184.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|.|.-||.++|++|++.+|.+.|+|++|++++|+ +|.+-||+||.|.+++||.+|+..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 344689999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred cCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhC
Q psy12549 187 IPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWN 264 (336)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~ 264 (336)
.|..+.... ..|||.+||...|..+|.++|++||.|..-+|+. .+|.++|.+||+|+...+|+.|+..||
T Consensus 119 RPSs~~Ik~--------aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 119 RPSSDSIKD--------ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred cCChhhhcc--------cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 987654432 5699999999999999999999999987666555 778999999999999999999999999
Q ss_pred CceecC--EEEEEeecccchhhHHHHH-H-------------------HH---------------HHHHHHhhc------
Q psy12549 265 GKEVDG--KILYVGRAQKKAERTQELK-R-------------------RF---------------EMLKIERLN------ 301 (336)
Q Consensus 265 g~~~~g--~~l~v~~~~~~~~~~~~~~-~-------------------~~---------------~~~~~~~~~------ 301 (336)
|..-.| .+|.|.|+....+...... . ++ .++..+...
T Consensus 191 G~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~ 270 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVN 270 (360)
T ss_pred CCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeec
Confidence 999877 5699999865432211110 0 00 000000000
Q ss_pred ----CCCCceEEEecCCCCCCHHHHHHhcCCCCCeeecC
Q psy12549 302 ----RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 302 ----~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~vk 336 (336)
...+.+|||.||.++++|.-|+++|.+||.|.+||
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVK 309 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVK 309 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEE
Confidence 01246899999999999999999999999999987
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2e-31 Score=236.35 Aligned_cols=170 Identities=28% Similarity=0.512 Sum_probs=153.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||.++|+++|+++|+.||.|.+|+++.+. ++.++|||||+|.++++|.+|++.|++..+.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33456899999999999999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred eccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHH
Q psy12549 185 KFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQA 262 (336)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~ 262 (336)
++.+.... ...++|||.|||..+++++|+++|++||.|..+.++. .+++++++|||+|.+.++|++|++.
T Consensus 183 ~a~p~~~~--------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 183 YARPGGES--------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred cccccccc--------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 87654321 1236799999999999999999999999999999887 5788899999999999999999999
Q ss_pred hCCceecC--EEEEEeecccchh
Q psy12549 263 WNGKEVDG--KILYVGRAQKKAE 283 (336)
Q Consensus 263 l~g~~~~g--~~l~v~~~~~~~~ 283 (336)
||+..+.| +.|+|.++.....
T Consensus 255 lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred hCCCccCCCceeEEEEECCcccc
Confidence 99999876 7899999886643
No 21
>KOG0123|consensus
Probab=99.98 E-value=1.6e-31 Score=238.03 Aligned_cols=259 Identities=36% Similarity=0.565 Sum_probs=227.8
Q ss_pred eeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEec
Q psy12549 21 VATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWS 99 (336)
Q Consensus 21 v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~~ 99 (336)
|+|.||+++++-.+|.++| .+|.+.++++..+.+ | ++|| ||+|.++ +.|.+|++.+||..+.|++|.+-..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g-~kg~-FV~f~~e--~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G-SKGY-FVQFESE--ESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C-ceee-EEEeCCH--HHHHHHHHHhcCcccCCCeeEEeec
Confidence 9999999999999999999 888999999999885 4 9999 9999999 9999999999999999999999765
Q ss_pred cCCCCcC------CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 100 QRDPSLR------KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 100 ~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
....... ....+.+++.+++.+.++..|...|+.+|.+..+.++.+..|.+++|+||.|.++++|..|+..+++
T Consensus 151 ~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 151 ERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred cchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccC
Confidence 5533211 1224579999999999999999999999999999999999888999999999999999999999999
Q ss_pred ceeCCeEEEEeeccCchhhhHhhhc----------cccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCcc
Q psy12549 174 MLLNSKIVFVGKFIPRKEREKELGE----------KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKS 242 (336)
Q Consensus 174 ~~~~~~~i~v~~~~~~~~~~~~~~~----------~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~ 242 (336)
..+.+..+.|..+....+....... .......|+|.|++..++.+.|++.|+.||.|.++.++. ..|.+
T Consensus 231 ~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~s 310 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKS 310 (369)
T ss_pred CcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCc
Confidence 9999999999888775443322221 123346799999999999999999999999999999988 88999
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhhHHH
Q psy12549 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287 (336)
Q Consensus 243 ~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~ 287 (336)
+|++||.|.+.++|.+|+..+||..+.|+.+.|.++..+..+..+
T Consensus 311 kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~ 355 (369)
T KOG0123|consen 311 KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRAR 355 (369)
T ss_pred cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhh
Confidence 999999999999999999999999999999999998855444443
No 22
>KOG0127|consensus
Probab=99.98 E-value=1.6e-31 Score=235.94 Aligned_cols=227 Identities=25% Similarity=0.411 Sum_probs=184.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..||||++||++++.++|.++|+.+|+|..+.++.++ ++.++||+||.|+-.+|++.|++..++..+.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 3799999999999999999999999999999999998 678999999999999999999999999999999999988776
Q ss_pred chhhhH-----------hhhc-------cccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEE
Q psy12549 189 RKEREK-----------ELGE-------KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVA 249 (336)
Q Consensus 189 ~~~~~~-----------~~~~-------~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~ 249 (336)
+..... .... ...+...|.|+|||+.+...+|+.+|+.||.|..+.|++ ..|+-.|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 543220 0000 011235799999999999999999999999999999998 566666999999
Q ss_pred eCCHHHHHHHHHHhCCceecCEEEEEeecccchhhHHHH-------HHHHHHHH-----------------------H--
Q psy12549 250 YESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL-------KRRFEMLK-----------------------I-- 297 (336)
Q Consensus 250 F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~-------~~~~~~~~-----------------------~-- 297 (336)
|.+..+|..|++.+||..|.||++-|.||.++....... ........ .
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 999999999999999999999999999997765322111 00000000 0
Q ss_pred -H---------------------------------------hhcCCCCceEEEecCCCCCCHHHHHHhcCCCCCeeecC
Q psy12549 298 -E---------------------------------------RLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 298 -~---------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~vk 336 (336)
+ +.+...+.+|||+|||+++++++|.++|++||+|.+++
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEE
Confidence 0 00001236899999999999999999999999998863
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=8.7e-31 Score=245.53 Aligned_cols=170 Identities=27% Similarity=0.519 Sum_probs=149.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||..+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+. |+|..+.|++|.|..+.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 35789999999999999999999999999999999987 78899999999999999999998 89999999999998765
Q ss_pred CchhhhHh----hhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHH
Q psy12549 188 PRKEREKE----LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQ 261 (336)
Q Consensus 188 ~~~~~~~~----~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~ 261 (336)
........ ........++|||+|||..+++++|+++|+.||.|..+.+.. .+|.++|||||+|.+.++|.+|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~ 246 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALE 246 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 43322211 001112247899999999999999999999999999999887 556889999999999999999999
Q ss_pred HhCCceecCEEEEEeecc
Q psy12549 262 AWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 262 ~l~g~~~~g~~l~v~~~~ 279 (336)
.|+|..+.|+.|.|.|+.
T Consensus 247 ~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 247 VMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred hcCCcEECCEEEEEEEcc
Confidence 999999999999999965
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=9.9e-31 Score=231.98 Aligned_cols=170 Identities=18% Similarity=0.303 Sum_probs=152.8
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
.....++|||+|||+++||++|+++| .++.+.+++++++. .+++++|||||+|.++ ++|++|++.|++..+.++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~---~tg~srGyaFVeF~~~--e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY---KTGYSFGYAFVDFGSE--ADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCccCcEEEEEEccH--HHHHHHHHHcCCCccCCc
Confidence 34578899999999999999999999 67789999999987 4789999999999999 999999999999999999
Q ss_pred eeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 93 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 93 ~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
+|+|.++..... ....++|||+|||.++|+++|+++|++||.|..+.+++++ ++.++++|||+|.+.++|++|++.|
T Consensus 178 ~i~V~~a~p~~~--~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 178 RLKVSYARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eeeeeccccccc--ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 999998765332 2345789999999999999999999999999999999987 8889999999999999999999999
Q ss_pred CCceeCC--eEEEEeeccCch
Q psy12549 172 NGMLLNS--KIVFVGKFIPRK 190 (336)
Q Consensus 172 ~~~~~~~--~~i~v~~~~~~~ 190 (336)
|+..+.+ ++|.|.++....
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCccCCCceeEEEEECCccc
Confidence 9998865 789998877654
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=4.3e-30 Score=239.27 Aligned_cols=173 Identities=25% Similarity=0.508 Sum_probs=151.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++++++|+++|+.||.|.+|.++.++ +|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 35789999999999999999999999999999999997 88999999999999999999999999999999999998654
Q ss_pred CchhhhH---hhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHH
Q psy12549 188 PRKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQA 262 (336)
Q Consensus 188 ~~~~~~~---~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~ 262 (336)
....... .........++|||+|||.++++++|+++|+.||.|.++++.+ .++.++|||||+|.+.++|.+|+..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 3221111 0111122347899999999999999999999999999999987 4677899999999999999999999
Q ss_pred hCCceecCEEEEEeecccc
Q psy12549 263 WNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 263 l~g~~~~g~~l~v~~~~~~ 281 (336)
|||..++|+.|+|.++...
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999998753
No 26
>KOG0110|consensus
Probab=99.97 E-value=4.9e-30 Score=233.57 Aligned_cols=257 Identities=21% Similarity=0.371 Sum_probs=213.8
Q ss_pred ccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
+.++-+.++|||..+..+++...| .++++..+.+++.. + + |+|+|.++ .+|.+|+..+.+..+...++
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G----~----~-aiv~fl~p--~eAr~Afrklaysr~k~~pl 451 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG----T----G-AIVEFLNP--LEARKAFRKLAYSRFKSAPL 451 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc----c----e-eeeeecCc--cchHHHHHHhchhhhccCcc
Confidence 445778999999999999999988 78888888665322 1 2 99999999 99999999999999998888
Q ss_pred EEEeccCCCCc------------------------------------------------CCCCCceEEEcCCCCCCCHHH
Q psy12549 95 RIMWSQRDPSL------------------------------------------------RKSGVGNVFIKNLDKSIDNKA 126 (336)
Q Consensus 95 ~v~~~~~~~~~------------------------------------------------~~~~~~~l~v~nlp~~~t~~~ 126 (336)
.+.|++.+... .....++||++||+.+++.++
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 88875442110 001123499999999999999
Q ss_pred HHHHhhccCCeeEEEEeeCCCC----CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhH-hhhcccc
Q psy12549 127 MYDTFSAFGSILSCKVAQDEQG----NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREK-ELGEKAK 201 (336)
Q Consensus 127 l~~~f~~~G~v~~~~~~~~~~~----~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~-~~~~~~~ 201 (336)
+..+|...|.|.++.|...+.+ .|.|||||+|.++++|++|++.|+|..++|+.|.+.++........ .......
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk 611 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKK 611 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccccccccc
Confidence 9999999999999988887644 2569999999999999999999999999999999999872222111 1111122
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..+.|.|+|+|+..+..+++++|..||.+.+++++. ..+.++|||||.|.++.+|.+|+.+|.+..+.||+|.++|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 246899999999999999999999999999999998 455679999999999999999999999999999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7765
No 27
>KOG0110|consensus
Probab=99.97 E-value=4.5e-30 Score=233.80 Aligned_cols=283 Identities=23% Similarity=0.323 Sum_probs=223.0
Q ss_pred CccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 13 GIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 13 ~~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
..+..+-.|||+|||++.+|+|++.+| |||.|--+ ++|.+|...+++..+.|+
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf-------------------------a~v~~~~~--~~avka~~~~D~k~fqgr 274 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF-------------------------AFVTFMFP--EHAVKAYSELDGKVFQGR 274 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh-------------------------HHHhhhhh--HHHHhhhhhccccccccc
Confidence 345666679999999999999999998 79999999 999999999999999999
Q ss_pred eeEEEeccCCCC--------------------------------------------------------------------
Q psy12549 93 PIRIMWSQRDPS-------------------------------------------------------------------- 104 (336)
Q Consensus 93 ~i~v~~~~~~~~-------------------------------------------------------------------- 104 (336)
-+.|.+......
T Consensus 275 mlhvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~a 354 (725)
T KOG0110|consen 275 MLHVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLA 354 (725)
T ss_pred eeeecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHH
Confidence 999866433211
Q ss_pred -------------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeC
Q psy12549 105 -------------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFE 159 (336)
Q Consensus 105 -------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~ 159 (336)
......+.++++|||..+..++|..+|..||.|..+.++ +.| -.|+|+|.
T Consensus 355 l~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G---~~aiv~fl 429 (725)
T KOG0110|consen 355 LGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG---TGAIVEFL 429 (725)
T ss_pred HHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc---ceeeeeec
Confidence 011123578999999999999999999999999999655 322 24999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEeeccCchhh-------------hH--------------hh---------------h
Q psy12549 160 TEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER-------------EK--------------EL---------------G 197 (336)
Q Consensus 160 ~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~-------------~~--------------~~---------------~ 197 (336)
++.+|..|+..|....+...++.+.|+...... .. .. .
T Consensus 430 ~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a 509 (725)
T KOG0110|consen 430 NPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVA 509 (725)
T ss_pred CccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhh
Confidence 999999999999998888888877654311100 00 00 0
Q ss_pred ccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCc----cceEEEEEeCCHHHHHHHHHHhCCceecCEE
Q psy12549 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGK----SRGFGFVAYESPEFAEKAVQAWNGKEVDGKI 272 (336)
Q Consensus 198 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~----~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~ 272 (336)
......++|||.||+++++.++|...|...|.|..+.|.. ..+. +.|||||+|.++++|..|++.|+|..++|+.
T Consensus 510 ~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 510 EDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHK 589 (725)
T ss_pred hccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCce
Confidence 0001114499999999999999999999999999998876 3332 4699999999999999999999999999999
Q ss_pred EEEeecccchhhHHHHHHHHHHHHHHhhcCCCCceEEEecCCCCCCHHHHHHhcCCCCCeeecC
Q psy12549 273 LYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 273 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~vk 336 (336)
|.|.++..+....-. ........++.|.|+|||++++-.+|+++|+.||.|.+|+
T Consensus 590 l~lk~S~~k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvR 644 (725)
T KOG0110|consen 590 LELKISENKPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVR 644 (725)
T ss_pred EEEEeccCccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeec
Confidence 999999833211111 1222233468899999999999999999999999999885
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=2.5e-29 Score=238.89 Aligned_cols=223 Identities=18% Similarity=0.328 Sum_probs=166.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAF------------GSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML 175 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~------------G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~ 175 (336)
...++|||+|||..+|+++|.++|+.+ +.|..+.+. ..+|||||+|.+.++|..|+. |+|..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 345799999999999999999999975 234444443 357899999999999999996 99999
Q ss_pred eCCeEEEEeeccCchhhh---------------H------hhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEE
Q psy12549 176 LNSKIVFVGKFIPRKERE---------------K------ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYR 234 (336)
Q Consensus 176 ~~~~~i~v~~~~~~~~~~---------------~------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~ 234 (336)
+.|+.|.|.......... . .........++|||+|||..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 999999997654322100 0 0000112347899999999999999999999999999999
Q ss_pred EeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhhHHHHHH--------HHH--HHHHHhhcC
Q psy12549 235 VMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR--------RFE--MLKIERLNR 302 (336)
Q Consensus 235 i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~ 302 (336)
++. .+|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++............ ... .........
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 887 57889999999999999999999999999999999999998543221100000 000 000001122
Q ss_pred CCCceEEEecCCCCC----------CHHHHHHhcCCCCCeeecC
Q psy12549 303 YQGVNLYVKNLDDSI----------DDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 303 ~~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~V~~vk 336 (336)
.+..+|+|.||...- ..++|+++|++||.|.+|+
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~ 450 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIV 450 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEE
Confidence 356789999996421 2368999999999999874
No 29
>KOG0124|consensus
Probab=99.96 E-value=4.3e-28 Score=204.67 Aligned_cols=252 Identities=20% Similarity=0.362 Sum_probs=206.3
Q ss_pred eeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEe
Q psy12549 20 NVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMW 98 (336)
Q Consensus 20 ~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~ 98 (336)
.||||.+.....|+-||.-| .+|++.++.+.||+ .|++++|||||+|+-+ |.|+.|++.+||..++||.|.|..
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp---~T~kHKgFAFVEYEvP--EaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---ATGKHKGFAFVEYEVP--EAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCcceeeccccc---ccccccceEEEEEeCc--HHHHHHHHHhccccccCccccccC
Confidence 49999999999999999999 99999999999999 6899999999999999 999999999999999999999976
Q ss_pred ccCCCC---------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCC-CCcccEEEEEeCCHHHHHHHH
Q psy12549 99 SQRDPS---------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSI 168 (336)
Q Consensus 99 ~~~~~~---------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~~g~afV~F~~~~~a~~a~ 168 (336)
....+. .+.....+|||..+.++.+++||+..|+.||+|..|.+-+.++ +.++||+|++|.+..+-..|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 444332 1112346899999999999999999999999999999999984 569999999999999999999
Q ss_pred HHhCCceeCCeEEEEeeccCchhhhHh----------------------------hhcc---------------------
Q psy12549 169 EKVNGMLLNSKIVFVGKFIPRKEREKE----------------------------LGEK--------------------- 199 (336)
Q Consensus 169 ~~l~~~~~~~~~i~v~~~~~~~~~~~~----------------------------~~~~--------------------- 199 (336)
..+|-+.++|..++|..+......-.. .+..
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~ 349 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPL 349 (544)
T ss_pred hhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCC
Confidence 999999999999999776533221000 0000
Q ss_pred --------------------------------------------------------------------------------
Q psy12549 200 -------------------------------------------------------------------------------- 199 (336)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (336)
T Consensus 350 ~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G 429 (544)
T KOG0124|consen 350 GTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISG 429 (544)
T ss_pred CCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccC
Confidence
Q ss_pred -------------ccccceEEEcCC--CCCCcH---HHHHHhhccCCceeEEEEeC-CCCcc-----ceEEEEEeCCHHH
Q psy12549 200 -------------AKLFTNVYIKNF--GEDFND---EKLKEMFEPYGTITSYRVMN-NDGKS-----RGFGFVAYESPEF 255 (336)
Q Consensus 200 -------------~~~~~~l~V~nl--p~~~t~---~~l~~~f~~~g~i~~~~i~~-~~~~~-----~g~afV~F~~~~~ 255 (336)
...++.+.++|+ |.++++ .+|.+.+++||.|.++.|.. ..+.. ---.||+|....+
T Consensus 430 ~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e 509 (544)
T KOG0124|consen 430 SSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASE 509 (544)
T ss_pred ccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhH
Confidence 000045667786 555554 68999999999999998887 22211 1236999999999
Q ss_pred HHHHHHHhCCceecCEEEEEe
Q psy12549 256 AEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 256 a~~a~~~l~g~~~~g~~l~v~ 276 (336)
+.+|.+.|+|+.|+|+++..+
T Consensus 510 ~~rak~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 510 THRAKQALDGRFFGGRKVVAE 530 (544)
T ss_pred HHHHHHhhccceecCceeehh
Confidence 999999999999999998764
No 30
>KOG0144|consensus
Probab=99.96 E-value=2.6e-28 Score=210.13 Aligned_cols=193 Identities=22% Similarity=0.387 Sum_probs=161.3
Q ss_pred CCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHH
Q psy12549 90 KGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~ 168 (336)
.|..++...+...+.....+..++||+-+|..++|+||+++|++||.|.+|.+++|+ ++.++|||||.|.+.++|.+|+
T Consensus 14 ~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~ 93 (510)
T KOG0144|consen 14 GGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAI 93 (510)
T ss_pred CCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHH
Confidence 344444444333333444556789999999999999999999999999999999998 8899999999999999999999
Q ss_pred HHhCCce-eC--CeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccce
Q psy12549 169 EKVNGML-LN--SKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRG 244 (336)
Q Consensus 169 ~~l~~~~-~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g 244 (336)
.+|++.. +. .++|.|.++.....+. ...++|||+-|++.++|.+++++|++||.|++|.|++ ..+.+||
T Consensus 94 ~Alhn~ktlpG~~~pvqvk~Ad~E~er~-------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRG 166 (510)
T KOG0144|consen 94 NALHNQKTLPGMHHPVQVKYADGERERI-------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRG 166 (510)
T ss_pred HHhhcccccCCCCcceeecccchhhhcc-------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccc
Confidence 9998864 43 4788888876655442 1227799999999999999999999999999999999 8899999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCce-ecC--EEEEEeecccchhhHHHHH
Q psy12549 245 FGFVAYESPEFAEKAVQAWNGKE-VDG--KILYVGRAQKKAERTQELK 289 (336)
Q Consensus 245 ~afV~F~~~~~a~~a~~~l~g~~-~~g--~~l~v~~~~~~~~~~~~~~ 289 (336)
+|||+|.+.+.|..|++.|||.. ++| .+|.|+||..+.++.....
T Consensus 167 caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~l 214 (510)
T KOG0144|consen 167 CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRL 214 (510)
T ss_pred eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHH
Confidence 99999999999999999999976 666 5799999987766555444
No 31
>KOG0148|consensus
Probab=99.96 E-value=8.2e-28 Score=195.41 Aligned_cols=170 Identities=26% Similarity=0.342 Sum_probs=155.2
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
..+.+-.|+|+-|.+.++-++||+-| .++.+.+.++++|.+ |++|+||+||.|.+. ++|+.|+..|||.=+++|
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~---T~KsKGYgFVSf~~k--~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN---TGKSKGYGFVSFPNK--EDAENAIQQMNGQWLGRR 132 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeeccc---CCcccceeEEeccch--HHHHHHHHHhCCeeeccc
Confidence 33446679999999999999999999 999999999999984 899999999999999 999999999999999999
Q ss_pred eeEEEeccCCCC--------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEe
Q psy12549 93 PIRIMWSQRDPS--------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHF 158 (336)
Q Consensus 93 ~i~v~~~~~~~~--------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F 158 (336)
.||-.|+.+++. ......++||++|++..+++++|++.|+.||.|.+|++.++ +|||||.|
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF 207 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRF 207 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEe
Confidence 999999998874 22235689999999999999999999999999999999987 68999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhh
Q psy12549 159 ETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193 (336)
Q Consensus 159 ~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 193 (336)
++.|.|.+|+-.+|+..+.|+.++|.|-+......
T Consensus 208 ~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 208 ETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred cchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999999999999987665543
No 32
>KOG0147|consensus
Probab=99.94 E-value=8.2e-27 Score=207.26 Aligned_cols=255 Identities=21% Similarity=0.304 Sum_probs=203.5
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
-.++|+.-.|+...++.+|.+|| ..+.+..|.++.|++ +++++|.|||+|.+. +....|+. |.|..+.|-+|.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~---s~rskgi~Yvef~D~--~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN---SRRSKGIAYVEFCDE--QSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc---chhhcceeEEEEecc--cchhhHhh-hcCCcccCceeE
Confidence 35789999999999999999999 667888999999994 688999999999999 99999997 999999999999
Q ss_pred EEeccCCCC--------cC----CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHH
Q psy12549 96 IMWSQRDPS--------LR----KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEE 162 (336)
Q Consensus 96 v~~~~~~~~--------~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~ 162 (336)
|..+..... .. ...-..|||+||..++++++|+..|+.||.|..|.+.++. +|.++||+|++|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 987543211 11 0011239999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEeeccCchhhhH------------------------h-----------------------
Q psy12549 163 AANKSIEKVNGMLLNSKIVFVGKFIPRKEREK------------------------E----------------------- 195 (336)
Q Consensus 163 ~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~------------------------~----------------------- 195 (336)
+|.+|+..|||..+.|+.|.|........... .
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 99999999999999999999854321110000 0
Q ss_pred ---------hh--------ccc-------cccceEEEcCCC--CCCc--------HHHHHHhhccCCceeEEEEeCCCCc
Q psy12549 196 ---------LG--------EKA-------KLFTNVYIKNFG--EDFN--------DEKLKEMFEPYGTITSYRVMNNDGK 241 (336)
Q Consensus 196 ---------~~--------~~~-------~~~~~l~V~nlp--~~~t--------~~~l~~~f~~~g~i~~~~i~~~~~~ 241 (336)
.+ ... .+..++.+.|+= ...| .+++.+.+++||.|..|.+.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n--- 488 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN--- 488 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC---
Confidence 00 000 111234445542 1112 2688899999999999988653
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 242 ~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
+-|+.||.|.+.++|..|+.+|||.||.|+.|...|...
T Consensus 489 s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 489 SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 248999999999999999999999999999999998653
No 33
>KOG0131|consensus
Probab=99.94 E-value=3.9e-26 Score=175.31 Aligned_cols=172 Identities=28% Similarity=0.409 Sum_probs=152.7
Q ss_pred cccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCee
Q psy12549 15 IIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRP 93 (336)
Q Consensus 15 ~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~ 93 (336)
.....+|||+||+..++++.|-++| ..++++++++.+++ .+....||||++|.++ |+|.-|++.+|...+.|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDr---v~~~~qGygF~Ef~~e--edadYAikiln~VkLYgrp 80 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDR---VTQKHQGYGFAEFRTE--EDADYAIKILNMVKLYGRP 80 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhh---hcccccceeEEEEech--hhhHHHHHHHHHHHhcCce
Confidence 3567889999999999999999999 78899999999998 5678999999999999 9999999999999999999
Q ss_pred eEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 94 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS-CKVAQDE-QGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 94 i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
|++..+..... ...-.+++||+||.+.+++..|...|+.||.+.. ..+++++ +|.++|+||+.|++.+.+.+|+..+
T Consensus 81 Irv~kas~~~~-nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 81 IRVNKASAHQK-NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred eEEEecccccc-cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 99998873322 2333489999999999999999999999998665 5777777 6889999999999999999999999
Q ss_pred CCceeCCeEEEEeeccCchhh
Q psy12549 172 NGMLLNSKIVFVGKFIPRKER 192 (336)
Q Consensus 172 ~~~~~~~~~i~v~~~~~~~~~ 192 (336)
+|..+.++++.|.++..+...
T Consensus 160 ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccchhcCCceEEEEEEecCCC
Confidence 999999999999988765543
No 34
>KOG4212|consensus
Probab=99.93 E-value=5e-24 Score=184.04 Aligned_cols=164 Identities=19% Similarity=0.304 Sum_probs=138.7
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh--cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS--SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG 91 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f--~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g 91 (336)
.-...|.+||.|||+++.=++|++++ .-+.++-|.+..|. .|+++|+|.|+|+++ |.+++|++.||...+.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~----~GK~rGcavVEFk~~--E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE----SGKARGCAVVEFKDP--ENVQKALEKLNKYEVNG 113 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc----CCCcCCceEEEeeCH--HHHHHHHHHhhhccccC
Confidence 34456679999999999999999999 55688888888877 599999999999999 99999999999999999
Q ss_pred eeeEEEeccCCCC-------------------------------------------------------------------
Q psy12549 92 RPIRIMWSQRDPS------------------------------------------------------------------- 104 (336)
Q Consensus 92 ~~i~v~~~~~~~~------------------------------------------------------------------- 104 (336)
|+|.+.-....+.
T Consensus 114 R~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~ 193 (608)
T KOG4212|consen 114 RELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSN 193 (608)
T ss_pred ceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchh
Confidence 9999975333111
Q ss_pred ----------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy12549 105 ----------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSI 168 (336)
Q Consensus 105 ----------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~ 168 (336)
.......++||.||...+..+.|++.|.-.|.+..+.+--++.|.++|+|.++|..+-+|..|+
T Consensus 194 ~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 194 YNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHH
Confidence 0112234799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeCCeEEEE
Q psy12549 169 EKVNGMLLNSKIVFV 183 (336)
Q Consensus 169 ~~l~~~~~~~~~i~v 183 (336)
..|++.-+..++..+
T Consensus 274 sml~~~g~~~~~~~~ 288 (608)
T KOG4212|consen 274 SMLDRQGLFDRRMTV 288 (608)
T ss_pred HhhccCCCcccccee
Confidence 999875554554444
No 35
>KOG0131|consensus
Probab=99.93 E-value=2.3e-25 Score=171.09 Aligned_cols=171 Identities=25% Similarity=0.515 Sum_probs=150.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
.+...+|||+||+..++++-|.++|-+.|+|..+.+++++ ++..+||||++|.++++|+-|++-||...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4556899999999999999999999999999999999998 777999999999999999999999999999999999988
Q ss_pred ccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEE-EEeC--CCCccceEEEEEeCCHHHHHHHHHH
Q psy12549 186 FIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY-RVMN--NDGKSRGFGFVAYESPEFAEKAVQA 262 (336)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~-~i~~--~~~~~~g~afV~F~~~~~a~~a~~~ 262 (336)
+.... ........+||+||.+.+++..|.+.|+.||.+..- ++++ .+|+++|+|||.|.+.+.+.+|+..
T Consensus 86 as~~~-------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 86 ASAHQ-------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ccccc-------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 76221 222233679999999999999999999999987653 4555 6688999999999999999999999
Q ss_pred hCCceecCEEEEEeecccchhh
Q psy12549 263 WNGKEVDGKILYVGRAQKKAER 284 (336)
Q Consensus 263 l~g~~~~g~~l~v~~~~~~~~~ 284 (336)
++|+.+..++++|+++..+...
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hccchhcCCceEEEEEEecCCC
Confidence 9999999999999999766443
No 36
>KOG1190|consensus
Probab=99.93 E-value=1.5e-24 Score=185.87 Aligned_cols=305 Identities=17% Similarity=0.202 Sum_probs=219.5
Q ss_pred CccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcc--cc
Q psy12549 13 GIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFD--AL 89 (336)
Q Consensus 13 ~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~--~~ 89 (336)
++-.|++.|.++|||.+++|+||.+++ .+|.++.+.+.+..+ .||++|.++ +.|..-+...... .+
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn---------QAflem~d~--~sAvtmv~~y~~~~p~l 91 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN---------QAFLEMADE--ESAVTMVNYYTSVTPVL 91 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch---------hhhhhhcch--hhhhheeecccccCccc
Confidence 455689999999999999999999999 888999998887553 499999999 8876633322221 55
Q ss_pred CCeeeEEEeccCCCC-----------------------------c---------CCCCCceEEEcCCCCCCCHHHHHHHh
Q psy12549 90 KGRPIRIMWSQRDPS-----------------------------L---------RKSGVGNVFIKNLDKSIDNKAMYDTF 131 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~-----------------------------~---------~~~~~~~l~v~nlp~~~t~~~l~~~f 131 (336)
.|++|.|.++..... . ..+.--.++|.|+-..++-+-|.++|
T Consensus 92 r~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvF 171 (492)
T KOG1190|consen 92 RGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVF 171 (492)
T ss_pred cCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHH
Confidence 678888776433110 0 00011257789999999999999999
Q ss_pred hccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEeeccCch------------------h
Q psy12549 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS--KIVFVGKFIPRK------------------E 191 (336)
Q Consensus 132 ~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~--~~i~v~~~~~~~------------------~ 191 (336)
++||.|..+.-.... ..-.|+|+|.+.+.|+.|...|+|..+.+ +.+++.+++-.. .
T Consensus 172 S~fG~VlKIiTF~Kn---n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP 248 (492)
T KOG1190|consen 172 SKFGFVLKIITFTKN---NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLP 248 (492)
T ss_pred hhcceeEEEEEEecc---cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCC
Confidence 999999876555432 22359999999999999999999988754 445554443100 0
Q ss_pred hh---------------------------------H--hhhcccc--ccceEEEcCCC-CCCcHHHHHHhhccCCceeEE
Q psy12549 192 RE---------------------------------K--ELGEKAK--LFTNVYIKNFG-EDFNDEKLKEMFEPYGTITSY 233 (336)
Q Consensus 192 ~~---------------------------------~--~~~~~~~--~~~~l~V~nlp-~~~t~~~l~~~f~~~g~i~~~ 233 (336)
.. . ..+.... ....|.|.||. +.+|.+-|-.+|+.||+|.++
T Consensus 249 ~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRV 328 (492)
T KOG1190|consen 249 VGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRV 328 (492)
T ss_pred CCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEE
Confidence 00 0 0000001 13568888886 558999999999999999999
Q ss_pred EEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhhH-------HHHHHHHHHHHHHh-------
Q psy12549 234 RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT-------QELKRRFEMLKIER------- 299 (336)
Q Consensus 234 ~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~-------~~~~~~~~~~~~~~------- 299 (336)
+|+...+ .-|.|+|.+...|+.|+..|+|..+.|+.|+|.+++...-.. ....+.+....-.+
T Consensus 329 kil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsK 405 (492)
T KOG1190|consen 329 KILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSK 405 (492)
T ss_pred EeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccc
Confidence 9997544 349999999999999999999999999999999986543211 11111111111111
Q ss_pred --hcC-CCCceEEEecCCCCCCHHHHHHhcCCCCCeee
Q psy12549 300 --LNR-YQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334 (336)
Q Consensus 300 --~~~-~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~ 334 (336)
.+. ++..++.+.|+|..++||+++++|..-|-..+
T Consensus 406 N~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vk 443 (492)
T KOG1190|consen 406 NYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK 443 (492)
T ss_pred cccccCCchhheeeccCCcccchhHHHHhhhcCCceEE
Confidence 111 45678999999999999999999999887654
No 37
>KOG0109|consensus
Probab=99.92 E-value=7.2e-25 Score=180.07 Aligned_cols=151 Identities=25% Similarity=0.501 Sum_probs=140.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCch
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
-+|||+|||..+++.+|+.+|++||+|.+|.|+++ ||||+.++...|..|+..|++-.++|..|.|+.++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 35999999999999999999999999999999976 99999999999999999999999999999998877662
Q ss_pred hhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 191 EREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 191 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
...++++|+|+...++.++|+..|++||+|..|+|+ ++|+||.|...++|..|+..|+|..|.|
T Consensus 76 ----------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv------kdy~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 76 ----------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV------KDYAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred ----------CCccccccCCCCccccCHHHhhhhcccCCceeeeee------cceeEEEEeeccchHHHHhccccccccc
Confidence 233789999999999999999999999999999998 8899999999999999999999999999
Q ss_pred EEEEEeecccchhh
Q psy12549 271 KILYVGRAQKKAER 284 (336)
Q Consensus 271 ~~l~v~~~~~~~~~ 284 (336)
++++|..+.++...
T Consensus 140 k~m~vq~stsrlrt 153 (346)
T KOG0109|consen 140 KRMHVQLSTSRLRT 153 (346)
T ss_pred ceeeeeeecccccc
Confidence 99999998877543
No 38
>KOG4211|consensus
Probab=99.90 E-value=1.3e-22 Score=178.43 Aligned_cols=247 Identities=17% Similarity=0.208 Sum_probs=192.0
Q ss_pred CceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEE
Q psy12549 18 KHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIM 97 (336)
Q Consensus 18 ~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~ 97 (336)
.--|.+++||+++|++||++||+...|.++.+.+. +|+..|-|||+|.++ +++++|++ .+...+..+-|.|-
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~-----~Gr~sGeA~Ve~~se--edv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRR-----NGRPSGEAYVEFTSE--EDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCceeEEEEecc-----CCCcCcceEEEeech--HHHHHHHH-hhHHHhCCceEEEE
Confidence 34588899999999999999999999999888874 378999999999999 99999999 78888888888886
Q ss_pred eccCCCC-------cCC--CCCceEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeeCCCCCcccEEEEEeCCHHHHHHH
Q psy12549 98 WSQRDPS-------LRK--SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS-CKVAQDEQGNSKGYGFVHFETEEAANKS 167 (336)
Q Consensus 98 ~~~~~~~-------~~~--~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~~~~g~afV~F~~~~~a~~a 167 (336)
.+...+. ... .....|.+++||.+||++||.++|+..-.+.. +.++.++.+++.|-|||+|++.+.|+.|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHH
Confidence 6533322 111 23457999999999999999999998876665 6678888888999999999999999999
Q ss_pred HHHhCCceeCCeEEEEeeccCchhhhHh-------------------hh-------------------------------
Q psy12549 168 IEKVNGMLLNSKIVFVGKFIPRKEREKE-------------------LG------------------------------- 197 (336)
Q Consensus 168 ~~~l~~~~~~~~~i~v~~~~~~~~~~~~-------------------~~------------------------------- 197 (336)
+.. |...+..+-|.|-.+......... ..
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~ 240 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYP 240 (510)
T ss_pred HHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCc
Confidence 984 666677777766433210000000 00
Q ss_pred --------------------c---------------cccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCc
Q psy12549 198 --------------------E---------------KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGK 241 (336)
Q Consensus 198 --------------------~---------------~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~ 241 (336)
. .......+++++||+..++.++.++|+..-++ .+++-. ++|+
T Consensus 241 ~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr 319 (510)
T KOG4211|consen 241 SLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGR 319 (510)
T ss_pred cccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCc
Confidence 0 00000458899999999999999999987665 566655 8999
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCEEEEE
Q psy12549 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275 (336)
Q Consensus 242 ~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v 275 (336)
.+|.|+|+|.+.++|..|+.. ++..+..+-+.+
T Consensus 320 ~TGEAdveF~t~edav~Amsk-d~anm~hrYVEl 352 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMGK-DGANMGHRYVEL 352 (510)
T ss_pred cCCcceeecccchhhHhhhcc-CCcccCcceeee
Confidence 999999999999999999986 677776666555
No 39
>KOG0124|consensus
Probab=99.90 E-value=2.3e-23 Score=176.21 Aligned_cols=169 Identities=25% Similarity=0.529 Sum_probs=150.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
++|||+.+.....|+.|+..|..||+|.++.+.+|+ +++++|||||+|+-++.|+.|++.+||..++||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 579999999999999999999999999999999998 9999999999999999999999999999999999999875543
Q ss_pred hhhh---HhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhC
Q psy12549 190 KERE---KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWN 264 (336)
Q Consensus 190 ~~~~---~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~ 264 (336)
.... ..........+.|||..+..+.+++||+..|+.||+|..|.+-+ ..+.++||+|++|.+..+...|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 3221 22233334457899999999999999999999999999999988 556679999999999999999999999
Q ss_pred CceecCEEEEEeecc
Q psy12549 265 GKEVDGKILYVGRAQ 279 (336)
Q Consensus 265 g~~~~g~~l~v~~~~ 279 (336)
-..++|..|+|..+.
T Consensus 274 lFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCV 288 (544)
T ss_pred hhhcccceEeccccc
Confidence 999999999998763
No 40
>KOG0146|consensus
Probab=99.89 E-value=8.3e-23 Score=166.02 Aligned_cols=190 Identities=29% Similarity=0.463 Sum_probs=160.4
Q ss_pred CeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy12549 91 GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 91 g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~ 170 (336)
.|+|.|.++..+.+. .+.++|||+.|...-.|+|++.+|..||.+.+|.+.+.++|.+||+|||.|.+..+|+.|+..
T Consensus 2 nrpiqvkpadsesrg--~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG--GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCccccccccccCC--ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 577888887665543 356899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCce-eC--CeEEEEeeccCchhhhHhhhccc-----------------------------------------------
Q psy12549 171 VNGML-LN--SKIVFVGKFIPRKEREKELGEKA----------------------------------------------- 200 (336)
Q Consensus 171 l~~~~-~~--~~~i~v~~~~~~~~~~~~~~~~~----------------------------------------------- 200 (336)
|+|.. +. ...+-|++++..+++.-......
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 99964 43 46777888776655421100000
Q ss_pred --------------------------------------------------------------------------------
Q psy12549 201 -------------------------------------------------------------------------------- 200 (336)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (336)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred -------------------------------------------cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC
Q psy12549 201 -------------------------------------------KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237 (336)
Q Consensus 201 -------------------------------------------~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~ 237 (336)
+..|.|||.-||.+..+.+|.++|-+||.|.+.++..
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 0008899999999999999999999999999887765
Q ss_pred --CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 238 --NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 238 --~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
.++.++-|+||.|+++.+|+.||..|||..|+-++|+|....++.
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 677889999999999999999999999999999999998887774
No 41
>KOG0109|consensus
Probab=99.86 E-value=1.2e-21 Score=161.22 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=138.6
Q ss_pred eeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEe
Q psy12549 20 NVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMW 98 (336)
Q Consensus 20 ~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~ 98 (336)
.|||||||..+++.+|+++| .++.+.++-++++ ||||..++. ..|+.|+..|++..++|..|.|..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdk--taaedairNLhgYtLhg~nInVea 70 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDK--TAAEDAIRNLHGYTLHGVNINVEA 70 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecc--cccHHHHhhcccceecceEEEEEe
Confidence 58999999999999999999 7789999999873 389999999 999999999999999999999998
Q ss_pred ccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 99 SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 99 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
++.+. ...++|+|+||.+.++..||+..|++||+|.+|.++++ |+||+|...++|..|++.|++.++.|
T Consensus 71 SksKs----k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 71 SKSKS----KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred ccccC----CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhccccccccc
Confidence 87763 23578999999999999999999999999999999976 99999999999999999999999999
Q ss_pred eEEEEeeccCchhhhHhh
Q psy12549 179 KIVFVGKFIPRKEREKEL 196 (336)
Q Consensus 179 ~~i~v~~~~~~~~~~~~~ 196 (336)
+.++|+.+..+....+..
T Consensus 140 k~m~vq~stsrlrtapgm 157 (346)
T KOG0109|consen 140 KRMHVQLSTSRLRTAPGM 157 (346)
T ss_pred ceeeeeeeccccccCCCC
Confidence 999999987765544433
No 42
>KOG0147|consensus
Probab=99.85 E-value=3.3e-21 Score=171.80 Aligned_cols=173 Identities=25% Similarity=0.455 Sum_probs=150.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..+++|+.-|+...++.+|.++|+.+|.|..|.++.++ ++.++|.|||+|.+.+....|+. |.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 45689999999999999999999999999999999998 88999999999999999999997 99999999999997755
Q ss_pred CchhhhHhhhcc------ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHH
Q psy12549 188 PRKEREKELGEK------AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKA 259 (336)
Q Consensus 188 ~~~~~~~~~~~~------~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a 259 (336)
............ ..+...|||+||.+.+++++|+..|++||.|..+.+.. .+|.++||+||+|.+.++|.+|
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 443332222211 22234499999999999999999999999999999988 4999999999999999999999
Q ss_pred HHHhCCceecCEEEEEeecccch
Q psy12549 260 VQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 260 ~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
+..|||..+-|+.|+|.....+.
T Consensus 337 ~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHhccceecCceEEEEEeeeec
Confidence 99999999999999997765443
No 43
>KOG0146|consensus
Probab=99.84 E-value=1.2e-20 Score=153.60 Aligned_cols=169 Identities=20% Similarity=0.302 Sum_probs=150.0
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccC-C--e
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALK-G--R 92 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~-g--~ 92 (336)
.++.||||-|.+.-.|+|+|.+| .+|.++++.+.+..+ |.++|+|||.|.+. .+|+.|+..|+|..-. | .
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~--~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSH--AEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccc--hHHHHHHHHhcccccCCCCcc
Confidence 67899999999999999999999 888999999999874 89999999999999 9999999999997443 3 5
Q ss_pred eeEEEeccCCCC--------------------------------------------------------------------
Q psy12549 93 PIRIMWSQRDPS-------------------------------------------------------------------- 104 (336)
Q Consensus 93 ~i~v~~~~~~~~-------------------------------------------------------------------- 104 (336)
.+-|.++..+..
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 677777655422
Q ss_pred --------------------------------------------------------------------------------
Q psy12549 105 -------------------------------------------------------------------------------- 104 (336)
Q Consensus 105 -------------------------------------------------------------------------------- 104 (336)
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence
Q ss_pred ----------------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEE
Q psy12549 105 ----------------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGF 155 (336)
Q Consensus 105 ----------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~af 155 (336)
....+.|+|||..||......||.+.|-.||.|.+.++..|+ ++.+|+|+|
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceee
Confidence 333567999999999999999999999999999999999998 888999999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 156 V~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
|.|+++.+|+.|+..+||..|+=++++|....+++.
T Consensus 332 VSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred EecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999999987766643
No 44
>KOG4205|consensus
Probab=99.82 E-value=2.6e-20 Score=160.57 Aligned_cols=173 Identities=26% Similarity=0.486 Sum_probs=152.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
+.++|||++|+..++++.|++.|.+||.|.+|.+++++ +++++||+||+|++++...+++. ...+.++|+.|....+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56889999999999999999999999999999999998 89999999999999999999988 47788999999999998
Q ss_pred CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCC
Q psy12549 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNG 265 (336)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g 265 (336)
++.......... ....+||++||.+++++++++.|.+||.|..+.++. .+..+++|+||.|.+++++++++. ..-
T Consensus 84 ~r~~~~~~~~~~--~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 84 SREDQTKVGRHL--RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred Cccccccccccc--ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 887654333222 346899999999999999999999999988887776 677789999999999999999997 488
Q ss_pred ceecCEEEEEeecccchhhH
Q psy12549 266 KEVDGKILYVGRAQKKAERT 285 (336)
Q Consensus 266 ~~~~g~~l~v~~~~~~~~~~ 285 (336)
..|.|+.+.|..|.++....
T Consensus 161 ~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeecCceeeEeeccchhhcc
Confidence 99999999999999886543
No 45
>KOG0120|consensus
Probab=99.82 E-value=3.2e-19 Score=161.18 Aligned_cols=254 Identities=15% Similarity=0.241 Sum_probs=191.9
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhccc-C------------CceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHH
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSSLI-D------------GNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERA 80 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~~~-~------------~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A 80 (336)
.....+.++|+++|+.+.|+.+..+|... - +..+.+ ...+.|||++|.+. ++|..|
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------n~~~nfa~ie~~s~--~~at~~ 239 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------NLEKNFAFIEFRSI--SEATEA 239 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------cccccceeEEecCC--Cchhhh
Confidence 44566779999999999999999988222 1 122222 34567899999999 999888
Q ss_pred HhhcCccccCCeeeEEEeccCCCC---------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeE
Q psy12549 81 LDTMNFDALKGRPIRIMWSQRDPS---------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS 139 (336)
Q Consensus 81 ~~~~~~~~~~g~~i~v~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 139 (336)
+. +++..+.|.++.+........ ........++|++||...++.++.++...||.+..
T Consensus 240 ~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~ 318 (500)
T KOG0120|consen 240 MA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA 318 (500)
T ss_pred hc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchh
Confidence 88 899999998888753221110 11123458999999999999999999999999999
Q ss_pred EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhHhhhc----------------cccc
Q psy12549 140 CKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGE----------------KAKL 202 (336)
Q Consensus 140 ~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~----------------~~~~ 202 (336)
..++.+. +|.++||||.+|.++.....|++.|||+.++++.+.++.+-........... ...+
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~ 398 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIP 398 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCc
Confidence 9999987 6899999999999999999999999999999999999876544322111111 0011
Q ss_pred cceEEEcCC--CCCC--------cHHHHHHhhccCCceeEEEEeCC-----CCccceEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 203 FTNVYIKNF--GEDF--------NDEKLKEMFEPYGTITSYRVMNN-----DGKSRGFGFVAYESPEFAEKAVQAWNGKE 267 (336)
Q Consensus 203 ~~~l~V~nl--p~~~--------t~~~l~~~f~~~g~i~~~~i~~~-----~~~~~g~afV~F~~~~~a~~a~~~l~g~~ 267 (336)
...|...|+ |.+. -.|+++..+++||.|..|.+.++ ..-..|-.||+|.+.+++++|++.|+|..
T Consensus 399 t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK 478 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK 478 (500)
T ss_pred chhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce
Confidence 122233332 1111 11567888999999999999873 22246779999999999999999999999
Q ss_pred ecCEEEEEeecc
Q psy12549 268 VDGKILYVGRAQ 279 (336)
Q Consensus 268 ~~g~~l~v~~~~ 279 (336)
|.||.+...|-.
T Consensus 479 F~nRtVvtsYyd 490 (500)
T KOG0120|consen 479 FANRTVVASYYD 490 (500)
T ss_pred eCCcEEEEEecC
Confidence 999999988854
No 46
>KOG1190|consensus
Probab=99.80 E-value=3.9e-18 Score=146.73 Aligned_cols=245 Identities=16% Similarity=0.193 Sum_probs=185.6
Q ss_pred eeeeecCchhhhhhhHHhhh-cccCCceE-EEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC--eeeE
Q psy12549 20 NVATRELSAKVVEGVSRSLS-SLIDGNTV-KYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG--RPIR 95 (336)
Q Consensus 20 ~v~v~~lp~~~~e~~l~~~f-~~~~~~~v-~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g--~~i~ 95 (336)
.++|+|+-..++-+-|.+.| .+|.+..+ .+.++.+ =.|.|+|.+. +.|+.|...|+|..+.. +.++
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~--------FQALvQy~d~--~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG--------FQALVQYTDA--VSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc--------hhhhhhccch--hhHHHHHHhccCCcccCceeEEE
Confidence 46679999999999999999 45544333 3333332 2399999999 99999999999987764 5566
Q ss_pred EEeccCCC----------C---------c------------------------------------------CCCCCceEE
Q psy12549 96 IMWSQRDP----------S---------L------------------------------------------RKSGVGNVF 114 (336)
Q Consensus 96 v~~~~~~~----------~---------~------------------------------------------~~~~~~~l~ 114 (336)
|.++.... + . .......|.
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 65432210 0 0 000135677
Q ss_pred EcCCC-CCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhh
Q psy12549 115 IKNLD-KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193 (336)
Q Consensus 115 v~nlp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 193 (336)
|.||. ..+|.+.|..+|.-||.|.+|+|...+ +-.|+|++.+...|+.|++.|+|..+.|++|+|.+++-..-..
T Consensus 302 vsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred EecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 88885 468999999999999999999999875 2469999999999999999999999999999998876321110
Q ss_pred ---------------------------HhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeE-EEEeCCCCccceE
Q psy12549 194 ---------------------------KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMNNDGKSRGF 245 (336)
Q Consensus 194 ---------------------------~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~-~~i~~~~~~~~g~ 245 (336)
++.....++..+++..|+|.++++|++++.|..-|.... .+.. ++.+.+
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~km 454 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKM 454 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcce
Confidence 011111244468999999999999999999987776533 3333 345778
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCE-EEEEeecccc
Q psy12549 246 GFVAYESPEFAEKAVQAWNGKEVDGK-ILYVGRAQKK 281 (336)
Q Consensus 246 afV~F~~~~~a~~a~~~l~g~~~~g~-~l~v~~~~~~ 281 (336)
|++.+.+.+.|..|+-.+++..+++. .++|+|++..
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred eecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999998764 8999998753
No 47
>KOG4205|consensus
Probab=99.77 E-value=1.5e-18 Score=149.79 Aligned_cols=239 Identities=19% Similarity=0.234 Sum_probs=177.8
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
....++|++|+++++++.|+.+| .++.+.++.+.+++ ++++++||+||+|.++ +...+++. .....+-|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~---~t~rsrgFgfv~f~~~--~~v~~vl~-~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDP---STGRSRGFGFVTFATP--EGVDAVLN-ARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccC---CCCCcccccceecCCC--cchheeec-ccccccCCcccc
Confidence 45679999999999999999999 77899999999998 5799999999999999 88877777 455678888888
Q ss_pred EEeccCCCCcCCCC----CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHH
Q psy12549 96 IMWSQRDPSLRKSG----VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 96 v~~~~~~~~~~~~~----~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~ 170 (336)
+..+.+........ ..+|||++||.+++++++++.|++||.|..+.++.|. +...+||+||.|.+++.+.+++.
T Consensus 79 ~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~- 157 (311)
T KOG4205|consen 79 PKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL- 157 (311)
T ss_pred ceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-
Confidence 87766654333322 4589999999999999999999999999999999887 78899999999999999999998
Q ss_pred hCCceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEe------C-CCCccc
Q psy12549 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM------N-NDGKSR 243 (336)
Q Consensus 171 l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~------~-~~~~~~ 243 (336)
..-+.+.++.+.|..+.++........... ......|+....+.-.|..+|..|++......- . ....+.
T Consensus 158 ~~f~~~~gk~vevkrA~pk~~~~~~~~~~~---~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (311)
T KOG4205|consen 158 QKFHDFNGKKVEVKRAIPKEVMQSTKSSVS---TRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNG 234 (311)
T ss_pred cceeeecCceeeEeeccchhhccccccccc---cccccccccccccccccchhccccCccccccccccccccccccccCC
Confidence 688999999999999988765443211000 111112344444444455666666655311100 1 111346
Q ss_pred eEEEEEeCCHHHHHHHHHHhCC
Q psy12549 244 GFGFVAYESPEFAEKAVQAWNG 265 (336)
Q Consensus 244 g~afV~F~~~~~a~~a~~~l~g 265 (336)
+.+|..|.+......+...+++
T Consensus 235 g~g~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 235 GSGYPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred CccccccCccccccccccccCC
Confidence 7788888877666555544443
No 48
>KOG0105|consensus
Probab=99.76 E-value=1.7e-17 Score=128.12 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=129.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+|||.++.+.+|..+|.+||.|..+.+...+ + ..+||||+|+++.+|+.|+..-+|-.++|..|.|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-C-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45789999999999999999999999999998876543 2 356999999999999999999999999999999998775
Q ss_pred chhhhH------------------hhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEe
Q psy12549 189 RKEREK------------------ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAY 250 (336)
Q Consensus 189 ~~~~~~------------------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F 250 (336)
...... ...+.......|.|.+||.+-+.+||++...+.|.|....+.+ -|++.|+|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r-----Dg~GvV~~ 157 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR-----DGVGVVEY 157 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec-----ccceeeee
Confidence 432111 0111222336799999999999999999999999999988876 45789999
Q ss_pred CCHHHHHHHHHHhCCceec
Q psy12549 251 ESPEFAEKAVQAWNGKEVD 269 (336)
Q Consensus 251 ~~~~~a~~a~~~l~g~~~~ 269 (336)
.+.++.+-|+..|+...+.
T Consensus 158 ~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eehhhHHHHHHhhcccccc
Confidence 9999999999999988874
No 49
>KOG4206|consensus
Probab=99.75 E-value=5.1e-17 Score=130.34 Aligned_cols=164 Identities=23% Similarity=0.371 Sum_probs=138.2
Q ss_pred ceEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 111 GNVFIKNLDKSIDNKAMYD----TFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~----~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
.||||.||+..+..++|+. +|++||.|..|.... +.+.+|.|||.|.+.+.|..|+..|+|..+.|+.+.+.++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4899999999999999887 999999999877665 4567899999999999999999999999999999999998
Q ss_pred cCchhhhHhh------------------------------------------hccccccceEEEcCCCCCCcHHHHHHhh
Q psy12549 187 IPRKEREKEL------------------------------------------GEKAKLFTNVYIKNFGEDFNDEKLKEMF 224 (336)
Q Consensus 187 ~~~~~~~~~~------------------------------------------~~~~~~~~~l~V~nlp~~~t~~~l~~~f 224 (336)
....+..... .....+...+++.|+|..++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 7654321110 1113344679999999999999999999
Q ss_pred ccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceec-CEEEEEeecc
Q psy12549 225 EPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD-GKILYVGRAQ 279 (336)
Q Consensus 225 ~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~ 279 (336)
..|.....++++.. -.+.|||+|.+...|..|...++|..+. ...+.+.++.
T Consensus 168 ~qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccC---CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999988862 2667999999999999999999999987 7888887764
No 50
>KOG1365|consensus
Probab=99.74 E-value=1.2e-17 Score=142.48 Aligned_cols=262 Identities=15% Similarity=0.130 Sum_probs=186.5
Q ss_pred CCccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC
Q psy12549 12 EGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG 91 (336)
Q Consensus 12 ~~~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g 91 (336)
.+.+.-+.-|..++||+..+..++..+|....+..--..-.- ...|+..|.|.|.|.++ |.-..|++ .+...+.+
T Consensus 54 ~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG--~~qgrRnge~lvrf~d~--e~Rdlalk-Rhkhh~g~ 128 (508)
T KOG1365|consen 54 NHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCL--NAQGRRNGEALVRFVDP--EGRDLALK-RHKHHMGT 128 (508)
T ss_pred ccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeee--hhhhccccceEEEecCc--hhhhhhhH-hhhhhccC
Confidence 455556666778999999999999999965554422111111 13577889999999999 99999999 67777777
Q ss_pred eeeEEEeccCCCC--------------cCCCCCceEEEcCCCCCCCHHHHHHHhhc---c-CCeeEEEEeeCCCCCcccE
Q psy12549 92 RPIRIMWSQRDPS--------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSA---F-GSILSCKVAQDEQGNSKGY 153 (336)
Q Consensus 92 ~~i~v~~~~~~~~--------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~---~-G~v~~~~~~~~~~~~~~g~ 153 (336)
+.|.+-.+....- ......--|.++|||.++++.++.++|.. . |....+.++..++|+..|-
T Consensus 129 ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGd 208 (508)
T KOG1365|consen 129 RYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGD 208 (508)
T ss_pred CceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccc
Confidence 8777744333211 11122335778999999999999999953 2 2456677787778999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC----------------------chh-hhHhhhccccccceEEEcC
Q psy12549 154 GFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP----------------------RKE-REKELGEKAKLFTNVYIKN 210 (336)
Q Consensus 154 afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~----------------------~~~-~~~~~~~~~~~~~~l~V~n 210 (336)
|||.|..+++|+.|+.. |...++-|.|.+-++.. ... .............+|.+++
T Consensus 209 AFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRG 287 (508)
T KOG1365|consen 209 AFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRG 287 (508)
T ss_pred eEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecC
Confidence 99999999999999985 44344433333211110 000 0001111122346899999
Q ss_pred CCCCCcHHHHHHhhccCCc-eeE--EEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 211 FGEDFNDEKLKEMFEPYGT-ITS--YRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 211 lp~~~t~~~l~~~f~~~g~-i~~--~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
||+..+.++|.++|..|.. |.. +++.. ..|+..|.|||+|.+.++|..|....+.....+|.|.|--+.
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9999999999999998865 333 55554 788999999999999999999999888888888999985554
No 51
>KOG1457|consensus
Probab=99.71 E-value=1.7e-16 Score=126.27 Aligned_cols=159 Identities=18% Similarity=0.374 Sum_probs=124.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIEKVNGMLLN---SKIVF 182 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~--~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~---~~~i~ 182 (336)
...+||||.|||.++...+|+.+|..|-.-+.+.+.... ...++.+||+.|.+.++|..|++.|||..++ +..++
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 446899999999999999999999999766666555543 3457789999999999999999999999885 67788
Q ss_pred EeeccCchhhhHhhhcc---------------------------------------------------------------
Q psy12549 183 VGKFIPRKEREKELGEK--------------------------------------------------------------- 199 (336)
Q Consensus 183 v~~~~~~~~~~~~~~~~--------------------------------------------------------------- 199 (336)
++.++.........+..
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 77765332211100000
Q ss_pred ---------------ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy12549 200 ---------------AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN 264 (336)
Q Consensus 200 ---------------~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~ 264 (336)
.....+|||.||..++++++|+.+|+.|.....+++....|. ..||++|.+.+.|..|+..|+
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~--~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGM--PVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCc--ceEeecHHHHHHHHHHHHHhh
Confidence 000057999999999999999999999988877777654343 469999999999999999999
Q ss_pred Ccee
Q psy12549 265 GKEV 268 (336)
Q Consensus 265 g~~~ 268 (336)
|..+
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 8776
No 52
>KOG1548|consensus
Probab=99.70 E-value=7.5e-16 Score=130.23 Aligned_cols=170 Identities=24% Similarity=0.296 Sum_probs=138.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSIL--------SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV 181 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i 181 (336)
.+.|||.|||.++|.+++.++|+++|.|. .|+++++..|.-+|-|++.|-..++...|+..|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 46799999999999999999999999765 4899999999999999999999999999999999999999999
Q ss_pred EEeeccCchhh-----------------hH-------------hhhccccccceEEEcCCCC----CCc-------HHHH
Q psy12549 182 FVGKFIPRKER-----------------EK-------------ELGEKAKLFTNVYIKNFGE----DFN-------DEKL 220 (336)
Q Consensus 182 ~v~~~~~~~~~-----------------~~-------------~~~~~~~~~~~l~V~nlp~----~~t-------~~~l 220 (336)
+|..+.-.... .. .........++|.+.|+=. ..+ .++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99876521100 00 0011122337888888732 122 3677
Q ss_pred HHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 221 ~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
++-+++||.|.++.+.. ..+.|.+-|.|.+.++|..+++.|+|++|+||.|..+....+
T Consensus 294 ~eec~K~G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHhCCcceEEEec--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 88899999999999874 234788999999999999999999999999999999876554
No 53
>KOG1456|consensus
Probab=99.70 E-value=7.3e-15 Score=125.34 Aligned_cols=298 Identities=15% Similarity=0.127 Sum_probs=210.9
Q ss_pred cccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhh--cCccccCC
Q psy12549 15 IIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDT--MNFDALKG 91 (336)
Q Consensus 15 ~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~--~~~~~~~g 91 (336)
..|+-.|.|++|-..++|.+|.+-. .++.+.-+..+..+ +.|.|+|++. +-|..++.- -+...+.|
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~---------r~alvefedi--~~akn~Vnfaa~n~i~i~g 96 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK---------RQALVEFEDI--EGAKNCVNFAADNQIYIAG 96 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc---------ceeeeeeccc--cchhhheehhccCcccccC
Confidence 3566679999999999999999977 55555555555433 5599999999 999988762 23356677
Q ss_pred eeeEEEeccCCC----CcCCCCCc-eEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHH
Q psy12549 92 RPIRIMWSQRDP----SLRKSGVG-NVFI--KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAA 164 (336)
Q Consensus 92 ~~i~v~~~~~~~----~~~~~~~~-~l~v--~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a 164 (336)
+.-.+.++..+. ..+..... .|.+ -|--+.+|.+-|..+....|.|.++.|.+. +| -.|.|+|++.+.|
T Consensus 97 q~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~A 172 (494)
T KOG1456|consen 97 QQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVA 172 (494)
T ss_pred chhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHH
Confidence 776666653321 11111222 3333 344457899999999999999999998875 22 3699999999999
Q ss_pred HHHHHHhCCceeC--CeEEEEeeccCchhhhH----------------------h---h--------------h------
Q psy12549 165 NKSIEKVNGMLLN--SKIVFVGKFIPRKEREK----------------------E---L--------------G------ 197 (336)
Q Consensus 165 ~~a~~~l~~~~~~--~~~i~v~~~~~~~~~~~----------------------~---~--------------~------ 197 (336)
++|.+.|||..|. =..|++++++|..-.-. . . +
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y 252 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGY 252 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCC
Confidence 9999999997763 36778887775321100 0 0 0
Q ss_pred -----------------------------ccccccceEEEcCCCCC-CcHHHHHHhhccCCceeEEEEeCCCCccceEEE
Q psy12549 198 -----------------------------EKAKLFTNVYIKNFGED-FNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGF 247 (336)
Q Consensus 198 -----------------------------~~~~~~~~l~V~nlp~~-~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~af 247 (336)
....+.+.++|.+|... .+-+.|-++|..||.|.++++++. ..|.|+
T Consensus 253 ~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtam 329 (494)
T KOG1456|consen 253 YSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAM 329 (494)
T ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeE
Confidence 00011256899999854 677899999999999999999972 256799
Q ss_pred EEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhh----------HHHHHHHHHH----------HHHHhhcCCCCce
Q psy12549 248 VAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER----------TQELKRRFEM----------LKIERLNRYQGVN 307 (336)
Q Consensus 248 V~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~----------~~~~~~~~~~----------~~~~~~~~~~~~~ 307 (336)
|++.+..+.++|+..||+..+.|.+|.+-.++...-. .... +.+.. ......-.+++++
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSf-Kdys~SkNnRFssp~qAsKNrIq~Ps~v 408 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSF-KDYSGSKNNRFSSPEQASKNRIQPPSNV 408 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcch-hhcccccccccCChhHhhcccccCCcce
Confidence 9999999999999999999999999999776533210 0000 11111 1111122357789
Q ss_pred EEEecCCCCCCHHHHHHhcCCCCC
Q psy12549 308 LYVKNLDDSIDDERLRKEFTPFGT 331 (336)
Q Consensus 308 l~v~nlp~~~t~~~l~~~F~~~G~ 331 (336)
|..-|.|..+||+.|.++|..-+.
T Consensus 409 LHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 409 LHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred eEEecCCCccCHHHHHHHhhhcCC
Confidence 999999999999999999977653
No 54
>KOG4206|consensus
Probab=99.69 E-value=7.2e-16 Score=123.79 Aligned_cols=160 Identities=15% Similarity=0.242 Sum_probs=135.9
Q ss_pred cccCceeeeecCchhhhhhhHHh----hh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 15 IIPKHNVATRELSAKVVEGVSRS----LS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 15 ~~p~~~v~v~~lp~~~~e~~l~~----~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
+.|+.+|||.||...+..++|+. +| .+|.+.+|...+ |.+.+|.|||.|.+. +.|-.|+..++|..|
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~--~~As~A~r~l~gfpF 77 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKET--EAASAALRALQGFPF 77 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecCh--hHHHHHHHHhcCCcc
Confidence 46777999999999999999999 88 566788887776 457899999999999 999999999999999
Q ss_pred CCeeeEEEeccCCCCc------------------------------------------------CCCCCceEEEcCCCCC
Q psy12549 90 KGRPIRIMWSQRDPSL------------------------------------------------RKSGVGNVFIKNLDKS 121 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~~------------------------------------------------~~~~~~~l~v~nlp~~ 121 (336)
.|++++|.++..+... .......+++.|||..
T Consensus 78 ygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~e 157 (221)
T KOG4206|consen 78 YGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSE 157 (221)
T ss_pred cCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcc
Confidence 9999999987654220 0112347999999999
Q ss_pred CCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEeec
Q psy12549 122 IDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN-SKIVFVGKF 186 (336)
Q Consensus 122 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~-~~~i~v~~~ 186 (336)
++.+.+..+|++|..-.+++++... ++.|||+|.+...|..|...+.+..+. ...+.+.++
T Consensus 158 s~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 158 SESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred hhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 9999999999999999999998864 458999999999999999999998876 777776554
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=3.4e-16 Score=122.06 Aligned_cols=83 Identities=33% Similarity=0.550 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||..+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|+.|++.|++..+.|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345789999999999999999999999999999999987 7889999999999999999999999999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.++.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7654
No 56
>KOG0105|consensus
Probab=99.68 E-value=1.1e-15 Score=118.20 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=125.2
Q ss_pred ccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
+.+..|||+|||.++-|.++.++| .++.+..+.+...+ ...+||||+|+++ .+|+.|+...+|..+.|+.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~--RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDP--RDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCc--cchhhhhhcccccccCcceE
Confidence 456789999999999999999999 88888888776544 2568999999999 99999999999999999999
Q ss_pred EEEeccCCCC------------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCc
Q psy12549 95 RIMWSQRDPS------------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS 150 (336)
Q Consensus 95 ~v~~~~~~~~------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~ 150 (336)
+|.++..... +..-....|.|.+||++.+..||+.+..+.|.|-...+.+|
T Consensus 76 RVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----- 150 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----- 150 (241)
T ss_pred EEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----
Confidence 9998654311 11122347999999999999999999999999998888876
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 151 KGYGFVHFETEEAANKSIEKVNGMLL 176 (336)
Q Consensus 151 ~g~afV~F~~~~~a~~a~~~l~~~~~ 176 (336)
|++.|+|...++-.-|+..|+...+
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccccc
Confidence 4889999999999999999887655
No 57
>KOG1456|consensus
Probab=99.68 E-value=4.1e-14 Score=120.83 Aligned_cols=252 Identities=13% Similarity=0.130 Sum_probs=191.0
Q ss_pred cceeccCCCCccccCceeee--ecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHH
Q psy12549 4 AQTVQLSEEGIIIPKHNVAT--RELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERA 80 (336)
Q Consensus 4 ~~~~~~~~~~~~~p~~~v~v--~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A 80 (336)
|+-++-+-...-.|+.-|.+ -|--+.+|-+.|.+.. ..+.+..+.+.+..+ -.|.|+|.+. +.|++|
T Consensus 106 sq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng--------VQAmVEFdsv--~~AqrA 175 (494)
T KOG1456|consen 106 SQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG--------VQAMVEFDSV--EVAQRA 175 (494)
T ss_pred hhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc--------eeeEEeechh--HHHHHH
Confidence 55555555555566666544 5666789999999988 888888877776543 3499999999 999999
Q ss_pred HhhcCccccCC--eeeEEEeccCCCC------------------------------------------------------
Q psy12549 81 LDTMNFDALKG--RPIRIMWSQRDPS------------------------------------------------------ 104 (336)
Q Consensus 81 ~~~~~~~~~~g--~~i~v~~~~~~~~------------------------------------------------------ 104 (336)
...|||..+.. +.++|.++.+...
T Consensus 176 k~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg 255 (494)
T KOG1456|consen 176 KAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSG 255 (494)
T ss_pred HhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCccc
Confidence 99999987753 5677766555211
Q ss_pred -----------------c---------CCCCCceEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEE
Q psy12549 105 -----------------L---------RKSGVGNVFIKNLDKS-IDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVH 157 (336)
Q Consensus 105 -----------------~---------~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~ 157 (336)
. .....+.++|.+|... +..+.|.++|..||+|..+++++.+.| .|.|+
T Consensus 256 ~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g----tamVe 331 (494)
T KOG1456|consen 256 DRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG----TAMVE 331 (494)
T ss_pred ccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc----eeEEE
Confidence 0 0012457899999874 688899999999999999999998654 89999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhh-----------------------------hHhhhccccccceEEE
Q psy12549 158 FETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER-----------------------------EKELGEKAKLFTNVYI 208 (336)
Q Consensus 158 F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~V 208 (336)
+.+..+.++|+..||+..+-|.+|.+..++..--. .........+++.|+.
T Consensus 332 mgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHf 411 (494)
T KOG1456|consen 332 MGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHF 411 (494)
T ss_pred cCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEE
Confidence 99999999999999999999999988665522100 0111112345578999
Q ss_pred cCCCCCCcHHHHHHhhccCCc-eeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 209 KNFGEDFNDEKLKEMFEPYGT-ITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 209 ~nlp~~~t~~~l~~~f~~~g~-i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
-|.|..+||+.|.++|...+. -.++++.. .+.+ ...+.++|++.++|..|+..+|...+.+
T Consensus 412 fNaP~~vtEe~l~~i~nek~v~~~svkvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 412 FNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred ecCCCccCHHHHHHHhhhcCCCcceEEeecccccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 999999999999999986553 45666766 3333 4458999999999999999999999876
No 58
>KOG4211|consensus
Probab=99.68 E-value=1.2e-15 Score=134.90 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=130.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
..-|.+++||.++|++||.++|+..+ |+.+.+.+. +|+..|-|||+|.+++++.+|++ .+...+..+.|.|-.+...
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 35688999999999999999999886 676555543 67888999999999999999999 5888999999999666444
Q ss_pred hhhhHh--hh-ccccccceEEEcCCCCCCcHHHHHHhhccCCceeE-EEEeC-CCCccceEEEEEeCCHHHHHHHHHHhC
Q psy12549 190 KEREKE--LG-EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWN 264 (336)
Q Consensus 190 ~~~~~~--~~-~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~-~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~ 264 (336)
...... .+ ........|.+++||+.++++||.++|+..-.+.. +-++. ..++++|.|||+|++.+.|++|+.. |
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-h 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-H 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-H
Confidence 322111 11 11123467999999999999999999998765555 22222 6777899999999999999999986 7
Q ss_pred CceecCEEEEEeecc
Q psy12549 265 GKEVDGKILYVGRAQ 279 (336)
Q Consensus 265 g~~~~g~~l~v~~~~ 279 (336)
...|.-|-|.|-.+.
T Consensus 166 re~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSS 180 (510)
T ss_pred HHhhccceEEeehhH
Confidence 777887888886554
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=6.6e-16 Score=120.46 Aligned_cols=83 Identities=28% Similarity=0.574 Sum_probs=76.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|++||.|.++.++. .++.+++||||+|.+.++|+.|++.|++..+.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3447899999999999999999999999999999986 57889999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76643
No 60
>KOG4212|consensus
Probab=99.66 E-value=3.8e-15 Score=129.45 Aligned_cols=168 Identities=23% Similarity=0.344 Sum_probs=140.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSA-FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.+.+||.|||++....+|+.+|.. .|+|+.|.+..|..|+++|+|.|+|.++|.+++|++.||.+.+.|++|.|.--..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 356999999999999999999965 6899999999999999999999999999999999999999999999999954332
Q ss_pred chhhh---------------------------------------------------------------------------
Q psy12549 189 RKERE--------------------------------------------------------------------------- 193 (336)
Q Consensus 189 ~~~~~--------------------------------------------------------------------------- 193 (336)
.....
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 11000
Q ss_pred --HhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 194 --KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 194 --~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
....-..+...++||.||.+.+....|++.|.-.|.++.+.+-. ..|.++|+|.++|.++-.|-.|+..+++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 00000112236799999999999999999999999999998765 677889999999999999999999998877777
Q ss_pred EEEEEee
Q psy12549 271 KILYVGR 277 (336)
Q Consensus 271 ~~l~v~~ 277 (336)
++..++.
T Consensus 284 ~~~~~Rl 290 (608)
T KOG4212|consen 284 RRMTVRL 290 (608)
T ss_pred ccceeec
Confidence 7776665
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=2.4e-15 Score=103.00 Aligned_cols=70 Identities=40% Similarity=0.707 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~ 182 (336)
|||+|||.++++++|+++|+.||.+..+.+..+..+..+++|||+|.+.++|..|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999987888999999999999999999999999999999875
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=5.6e-15 Score=101.17 Aligned_cols=69 Identities=41% Similarity=0.796 Sum_probs=66.4
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEE
Q psy12549 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274 (336)
Q Consensus 206 l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~ 274 (336)
|||+|||.++++++|+++|+.||.+..+.+.. .++..+++|||+|.+.++|++|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999988 7888999999999999999999999999999999986
No 63
>KOG0106|consensus
Probab=99.61 E-value=1.5e-15 Score=123.28 Aligned_cols=155 Identities=22% Similarity=0.443 Sum_probs=129.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
.+||++||+.+.+++|..+|..||.+..+.+.. ||+||.|.+..+|..|+..+|+..+.+-.+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 589999999999999999999999999888763 5999999999999999999999999988888888774211
Q ss_pred hh------------HhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHH
Q psy12549 192 RE------------KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKA 259 (336)
Q Consensus 192 ~~------------~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a 259 (336)
.. ..........+.+.+.|++..+...+|.+.|.++|.+..... ..+++||+|...++|.+|
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhc
Confidence 11 011111233467899999999999999999999999855444 378899999999999999
Q ss_pred HHHhCCceecCEEEEEeecc
Q psy12549 260 VQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 260 ~~~l~g~~~~g~~l~v~~~~ 279 (336)
+..++|..+.|+.|.+....
T Consensus 150 ~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred chhccchhhcCceeeecccC
Confidence 99999999999999995443
No 64
>KOG1548|consensus
Probab=99.58 E-value=6.6e-14 Score=118.62 Aligned_cols=165 Identities=16% Similarity=0.192 Sum_probs=132.5
Q ss_pred ccCceeeeecCchhhhhhhHHhhhcccCCc---------eEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCc
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLSSLIDGN---------TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNF 86 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~---------~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~ 86 (336)
.-+++|||.|||.++|-+++.++|+..++. .+++.++.. |+-+|=|.+.|-.. ++...|++.|++
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~--ESVeLA~~ilDe 205 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKR--ESVELAIKILDE 205 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecc--cHHHHHHHHhCc
Confidence 446779999999999999999999433322 577888773 88999999999999 999999999999
Q ss_pred cccCCeeeEEEeccCCCC------------------------------------cCCCCCceEEEcCCCC----CCC---
Q psy12549 87 DALKGRPIRIMWSQRDPS------------------------------------LRKSGVGNVFIKNLDK----SID--- 123 (336)
Q Consensus 87 ~~~~g~~i~v~~~~~~~~------------------------------------~~~~~~~~l~v~nlp~----~~t--- 123 (336)
..+.|+.|+|..+.-... ......++|.++|+=. ..+
T Consensus 206 ~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 206 DELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred ccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 999999999986543211 1122356899999821 222
Q ss_pred ----HHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 124 ----NKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 124 ----~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
+++|.+-.++||.|..|.+.-. +..|.+-|.|.+.++|..|++.|+|..++||.|....+...
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 3567788999999999988854 24578999999999999999999999999999998776543
No 65
>KOG4307|consensus
Probab=99.55 E-value=8.5e-14 Score=127.51 Aligned_cols=165 Identities=10% Similarity=0.014 Sum_probs=129.7
Q ss_pred cCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI 96 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v 96 (336)
-+--+.+.+.+.+..+.|+|+||.-..+..+.+..+.. .+...|-++|+|... ..+++|+. .|...+-.|.+.+
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v---~~~~tG~~~v~f~~~--~~~q~A~~-rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRV---APPQTGRKTVMFTPQ--APFQNAFT-RNPSDDVNRPFQT 383 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhc---CCCcCCceEEEecCc--chHHHHHh-cCchhhhhcceee
Confidence 33446679999999999999999777777777666552 233468899999999 99999998 7888777888877
Q ss_pred EeccCCCC-------------------------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeE
Q psy12549 97 MWSQRDPS-------------------------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS 139 (336)
Q Consensus 97 ~~~~~~~~-------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 139 (336)
.++..... ........|||.+||..+++.++.++|...-.|+.
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 65332110 11122458999999999999999999998887777
Q ss_pred -EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 140 -CKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 140 -~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
+.+.+.+++...+.|||.|..++++..|...-+.++++.+.|.|....
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 777777788889999999999999999988667778888888886544
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=4.7e-14 Score=96.59 Aligned_cols=70 Identities=30% Similarity=0.623 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~ 182 (336)
|+|+|||+++++++|+++|+.+|.|..+.+..++.+.++++|||+|.++++|..|+..+++..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998788999999999999999999999999999999874
No 67
>KOG0122|consensus
Probab=99.54 E-value=2.6e-14 Score=115.56 Aligned_cols=81 Identities=33% Similarity=0.559 Sum_probs=77.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|.|.||+.++++++|.++|.+||.|.++.+.+ .+|.++|||||+|.+.++|.+||+.|||.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3457899999999999999999999999999999887 89999999999999999999999999999999999999999
Q ss_pred ccc
Q psy12549 279 QKK 281 (336)
Q Consensus 279 ~~~ 281 (336)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 68
>KOG0122|consensus
Probab=99.54 E-value=3.7e-14 Score=114.66 Aligned_cols=82 Identities=29% Similarity=0.490 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
.+.++|.|.||+.++++.+|.++|.+||.|.++.+.+++ +|.++|||||.|.+.++|++|++.|||.-+++--|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356789999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCc
Q psy12549 187 IPR 189 (336)
Q Consensus 187 ~~~ 189 (336)
.|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 69
>KOG1457|consensus
Probab=99.54 E-value=6.7e-14 Score=111.56 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=115.4
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCc--eEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccC---
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGN--TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALK--- 90 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~--~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~--- 90 (336)
.-|+|||.+||.++.-.||..+| .+.+-+ -+++....+ ...+.+||+.|.+. +.|+.|+..|||..|.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~----~~~~pvaFatF~s~--q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGD----QVCKPVAFATFTSH--QFALAAMNALNGVRFDPET 106 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCC----ccccceEEEEecch--HHHHHHHHHhcCeeecccc
Confidence 46899999999999999999999 333333 333332221 22458999999999 9999999999999884
Q ss_pred CeeeEEEeccCCCC------------------------------------------------------------------
Q psy12549 91 GRPIRIMWSQRDPS------------------------------------------------------------------ 104 (336)
Q Consensus 91 g~~i~v~~~~~~~~------------------------------------------------------------------ 104 (336)
+..++|..+..+..
T Consensus 107 ~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~ 186 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAP 186 (284)
T ss_pred CceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhh
Confidence 68888887665432
Q ss_pred -------------c-----CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHH
Q psy12549 105 -------------L-----RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166 (336)
Q Consensus 105 -------------~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~ 166 (336)
. ....-.+|||.||..+++|++|+.+|+.|.....+++.. +.| ...||+.|++.+.|-.
T Consensus 187 ~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 187 DSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATD 263 (284)
T ss_pred hhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHH
Confidence 0 000012899999999999999999999997766555543 233 4589999999999999
Q ss_pred HHHHhCCcee
Q psy12549 167 SIEKVNGMLL 176 (336)
Q Consensus 167 a~~~l~~~~~ 176 (336)
|+..|.|..+
T Consensus 264 am~~lqg~~~ 273 (284)
T KOG1457|consen 264 AMNHLQGNLL 273 (284)
T ss_pred HHHHhhccee
Confidence 9999988765
No 70
>KOG0125|consensus
Probab=99.53 E-value=1.4e-14 Score=121.78 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=74.8
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
+.|+|.|+|+...+-||+.+|.+||.|.+|.|+.....++||+||+|++.+||++|-++|||..+.||+|.|..+..+.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 7899999999999999999999999999999998666779999999999999999999999999999999999987664
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=1.4e-13 Score=94.14 Aligned_cols=69 Identities=41% Similarity=0.770 Sum_probs=62.9
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEE
Q psy12549 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274 (336)
Q Consensus 206 l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~ 274 (336)
|+|+|||..+++++|+++|+.||.|..+.+.. ..+.++++|||+|.++++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999987 4578899999999999999999999999999999885
No 72
>KOG0125|consensus
Probab=99.50 E-value=7.6e-14 Score=117.41 Aligned_cols=99 Identities=23% Similarity=0.450 Sum_probs=83.7
Q ss_pred ccCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHH
Q psy12549 88 ALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167 (336)
Q Consensus 88 ~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a 167 (336)
...|.++....+... ......++|+|.|||....+-||+.+|++||.|.+|.|+.+..| ||||+||+|++++||++|
T Consensus 76 ~t~g~~~~~~~st~s--~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRA 152 (376)
T KOG0125|consen 76 PTDGQPIQTQPSTNS--SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRA 152 (376)
T ss_pred CCCCCccccCCCCcC--CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHH
Confidence 334444444433222 23345678999999999999999999999999999999999877 899999999999999999
Q ss_pred HHHhCCceeCCeEEEEeeccCc
Q psy12549 168 IEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 168 ~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
.+.|||..+.||+|.|..+..+
T Consensus 153 Ra~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 153 RAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHhhcceeeceEEEEeccchh
Confidence 9999999999999999988766
No 73
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=6.3e-13 Score=116.47 Aligned_cols=128 Identities=28% Similarity=0.490 Sum_probs=108.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..+|||+|||..+++++|.++|..||.+..+.+..++ +|.++|+|||.|.++++|..|+..+++..+.|+.+.|.+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999996 899999999999999999999999999999999999999542
Q ss_pred ----chhhhH------------hhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC
Q psy12549 189 ----RKEREK------------ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237 (336)
Q Consensus 189 ----~~~~~~------------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~ 237 (336)
...... ...........+++.+++..++..++...|..+|.+....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 222210 0011122336789999999999999999999999996666655
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=3.8e-13 Score=112.26 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=69.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
++|||+|||+.+++++|+++|+.||.|.++.++... .++|||||+|.++++|+.|+. |+|..+.|+.|+|.++...
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 789999999999999999999999999999998743 357999999999999999996 9999999999999998643
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=6.5e-13 Score=110.91 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=71.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
.++|||+|||+.+++++|+++|+.||.|.++.++.++. ++|||||+|.++++|..|+. |+|..+.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 47899999999999999999999999999999998753 46899999999999999996 9999999999999997654
Q ss_pred h
Q psy12549 190 K 190 (336)
Q Consensus 190 ~ 190 (336)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=5.2e-13 Score=117.01 Aligned_cols=133 Identities=35% Similarity=0.536 Sum_probs=105.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..+|||+|||.++++++|+++|..||.+..+.+.. .++.++|+|||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999998887 4799999999999999999999999999999999999999653
Q ss_pred ----chhhHHH--HHHHHHHHHHHhhcCCCCceEEEecCCCCCCHHHHHHhcCCCCCeeec
Q psy12549 281 ----KAERTQE--LKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335 (336)
Q Consensus 281 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~v 335 (336)
+...... .................+..+++.|++...+..++...|..+|.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRA 255 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceee
Confidence 2111110 000000011112223456789999999999999999999999988543
No 77
>KOG0106|consensus
Probab=99.43 E-value=2.1e-13 Score=110.82 Aligned_cols=147 Identities=19% Similarity=0.279 Sum_probs=123.7
Q ss_pred eeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEe
Q psy12549 20 NVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMW 98 (336)
Q Consensus 20 ~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~ 98 (336)
.|||++||+.+.+.+|..|| .++.+..+.+.. ||+||+|.+. .+|..|+..+++..+.|-.+.+.|
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~--rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDP--RDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCch--hhhhcccchhcCceecceeeeeec
Confidence 58999999999999999999 777777766654 7789999999 999999999999999987788888
Q ss_pred ccCC------CC------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCC
Q psy12549 99 SQRD------PS------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFET 160 (336)
Q Consensus 99 ~~~~------~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~ 160 (336)
+... +. ......+.+.+.+++..+.+.+|...|+.+|.+....+. .+++||+|.+
T Consensus 70 ~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~ 142 (216)
T KOG0106|consen 70 ARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSE 142 (216)
T ss_pred ccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehh
Confidence 6631 11 112234689999999999999999999999998655442 4589999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 161 EEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 161 ~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
.++|.+|+..|++..+.++.|.+...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999443
No 78
>KOG0107|consensus
Probab=99.43 E-value=6.1e-13 Score=102.35 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+||+..+++.||...|..||++..|+|-..+ .|||||+|+++.||..|+..|+|..+.|..|.|+.+.-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 45889999999999999999999999999999999875 45999999999999999999999999999999988765
Q ss_pred ch
Q psy12549 189 RK 190 (336)
Q Consensus 189 ~~ 190 (336)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 44
No 79
>KOG0114|consensus
Probab=99.43 E-value=2e-12 Score=90.55 Aligned_cols=78 Identities=33% Similarity=0.471 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
+-|||+|||+++|.++..++|.+||+|..+++-...+ .+|.|||.|++..+|.+|+++|+|..+.++.|.|-+..+..
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 6699999999999999999999999999998865333 38899999999999999999999999999999999987654
No 80
>KOG0121|consensus
Probab=99.42 E-value=4.8e-13 Score=97.41 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=73.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
+++|||+||+..++|++|.++|+..|+|..|.+-.++ .....|||||+|-+.++|..|++.+++..++.++|.+.|-..
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 5889999999999999999999999999999888887 566789999999999999999999999999999999987543
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=2.2e-12 Score=88.20 Aligned_cols=71 Identities=41% Similarity=0.705 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
+|+|+|||..++.++|+++|+.||.+..+.+..++ +.++++|||+|.+.++|..|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999999877 678899999999999999999999999999999876
No 82
>KOG0114|consensus
Probab=99.41 E-value=2.3e-12 Score=90.24 Aligned_cols=89 Identities=22% Similarity=0.416 Sum_probs=77.5
Q ss_pred CCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q psy12549 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182 (336)
Q Consensus 103 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~ 182 (336)
.+..+...+-|||+|||.++|.++..++|.+||+|.++++-..+ ..+|-|||.|++..+|.+|+..|+|..+.++.+.
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 33444556789999999999999999999999999999887654 3578999999999999999999999999999999
Q ss_pred EeeccCchhhh
Q psy12549 183 VGKFIPRKERE 193 (336)
Q Consensus 183 v~~~~~~~~~~ 193 (336)
|.++.+.....
T Consensus 89 vlyyq~~~~~~ 99 (124)
T KOG0114|consen 89 VLYYQPEDAFK 99 (124)
T ss_pred EEecCHHHHHH
Confidence 99988765543
No 83
>KOG0149|consensus
Probab=99.41 E-value=6e-13 Score=107.35 Aligned_cols=77 Identities=26% Similarity=0.463 Sum_probs=69.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
++|||+||+..+..++|++.|++||+|.+..++.|+ +|+||||+||+|.+.++|.+|++. -+-.|+||+.-|+.+.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 689999999999999999999999999999999998 899999999999999999999994 34568899888877654
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2.6e-12 Score=87.86 Aligned_cols=72 Identities=42% Similarity=0.743 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 205 ~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
+|+|.|||..++.++|+++|+.||++..+.+....+.++++|||+|.+.++|.+|+..++|..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999999999887547788999999999999999999999999999999873
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=9.1e-13 Score=116.59 Aligned_cols=77 Identities=21% Similarity=0.465 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCH--HHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESP--EFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~--~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.+|||+||++.+++++|+..|+.||.|.++.|++.+| +|||||+|.+. .++.+|+..|||..|.|+.|+|..|++.
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 6799999999999999999999999999999998777 99999999987 6899999999999999999999999776
Q ss_pred h
Q psy12549 282 A 282 (336)
Q Consensus 282 ~ 282 (336)
-
T Consensus 89 Y 89 (759)
T PLN03213 89 Y 89 (759)
T ss_pred H
Confidence 4
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.5e-12 Score=115.28 Aligned_cols=80 Identities=15% Similarity=0.326 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETE--EAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~--~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...+|||+||++.+++++|..+|..||.|..|.|++. +| +|||||+|.+. .++.+|+..|||..|.|+.|+|..+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 3468999999999999999999999999999999943 56 89999999988 7899999999999999999999999
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+.-.
T Consensus 86 KP~YL 90 (759)
T PLN03213 86 KEHYL 90 (759)
T ss_pred cHHHH
Confidence 87643
No 87
>KOG0121|consensus
Probab=99.38 E-value=1.1e-12 Score=95.61 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=73.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
..+++|||+||+..++|++|.++|+.+|+|..|.+-- .+..+=|||||+|-+.++|..|+..++|..++.++|++.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3458999999999999999999999999999986643 45556799999999999999999999999999999999997
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
..-.+
T Consensus 114 ~GF~e 118 (153)
T KOG0121|consen 114 AGFVE 118 (153)
T ss_pred ccchh
Confidence 65543
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=3.5e-12 Score=104.81 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
...+|+|+||++.+|+++|+++|+.||.|..|.++++. .++++|||+|.++++|..|+. |+|..|.++.|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 34789999999999999999999999999999999883 456899999999999999997 999999999999988664
Q ss_pred c
Q psy12549 189 R 189 (336)
Q Consensus 189 ~ 189 (336)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 4
No 89
>KOG0107|consensus
Probab=99.38 E-value=1.2e-12 Score=100.74 Aligned_cols=78 Identities=32% Similarity=0.553 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
.++|||+||+..+++.||...|..||++..+-|-. .+.|||||+|+++.+|+.|+..|+|..|.|..|+|+++....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 47899999999999999999999999998887754 358999999999999999999999999999999999987664
Q ss_pred h
Q psy12549 283 E 283 (336)
Q Consensus 283 ~ 283 (336)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 90
>KOG4207|consensus
Probab=99.37 E-value=7.7e-13 Score=104.36 Aligned_cols=80 Identities=29% Similarity=0.468 Sum_probs=74.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
.....+|.|.||-+-++.++|+.+|++||.|-+|.|.. .++.++|||||.|....+|+.|+++|+|..++|+.|+|.+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34457899999999999999999999999999999988 7888999999999999999999999999999999999988
Q ss_pred cc
Q psy12549 278 AQ 279 (336)
Q Consensus 278 ~~ 279 (336)
|.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 74
No 91
>KOG4307|consensus
Probab=99.37 E-value=6e-12 Score=115.59 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=123.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.+.+-+.+++.+.++.|++++|... .+....+..+. .+...|.++|.|....++++|+.. |...+-+|.+.+.....
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 3456678999999999999998753 24555555554 233367899999999999999884 66666666666643321
Q ss_pred chhh--------hH------h-------------hhcc----ccccceEEEcCCCCCCcHHHHHHhhccCCceeE-EEEe
Q psy12549 189 RKER--------EK------E-------------LGEK----AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVM 236 (336)
Q Consensus 189 ~~~~--------~~------~-------------~~~~----~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~-~~i~ 236 (336)
..-. .. . .+.. ......|||..||..+++.++.++|.....|++ |.+.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 1100 00 0 0000 111267999999999999999999998777877 5555
Q ss_pred C-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 237 N-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 237 ~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
+ .++..++.|||.|.+++++..|...-+...++.+.|+|.-...+..
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 5 7888899999999999999999877666777789999977655543
No 92
>KOG0113|consensus
Probab=99.36 E-value=4.6e-12 Score=105.49 Aligned_cols=85 Identities=21% Similarity=0.490 Sum_probs=77.8
Q ss_pred CCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q psy12549 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI 180 (336)
Q Consensus 102 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~ 180 (336)
++.......+||||.-|+.+++|+.|+..|+.||+|..+.|+.+. +|+++|||||+|.++.+...|.+..+|..|+|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 334444566899999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred EEEeec
Q psy12549 181 VFVGKF 186 (336)
Q Consensus 181 i~v~~~ 186 (336)
|.|..-
T Consensus 173 i~VDvE 178 (335)
T KOG0113|consen 173 ILVDVE 178 (335)
T ss_pred EEEEec
Confidence 998653
No 93
>KOG0149|consensus
Probab=99.36 E-value=1.2e-12 Score=105.72 Aligned_cols=77 Identities=29% Similarity=0.568 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+||++.++.++|++.|++||+|.+..++. .+|+++||+||+|.+.++|.+|++. -+-.|+||+..|..|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 37899999999999999999999999999988876 8899999999999999999999986 56678999999887643
No 94
>KOG0126|consensus
Probab=99.36 E-value=1.1e-13 Score=106.82 Aligned_cols=80 Identities=20% Similarity=0.468 Sum_probs=75.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
+++-|||+|||...||.||.-+|++||.+..+.+++|+ +|.|+||||+.|++..+...|+..|||..+.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34779999999999999999999999999999999998 99999999999999999999999999999999999996644
Q ss_pred C
Q psy12549 188 P 188 (336)
Q Consensus 188 ~ 188 (336)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 95
>KOG1365|consensus
Probab=99.36 E-value=6.6e-13 Score=113.90 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=124.9
Q ss_pred eeeeecCchhhhhhhHHhhhc-----ccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 20 NVATRELSAKVVEGVSRSLSS-----LIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 20 ~v~v~~lp~~~~e~~l~~~f~-----~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
-|.+++||.++++.++..||. .++.+.|.++...+ |+..|-|||.|..+ ++|+.|+. .+...++.|-|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----grpTGdAFvlfa~e--e~aq~aL~-khrq~iGqRYI 235 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----GRPTGDAFVLFACE--EDAQFALR-KHRQNIGQRYI 235 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----CCcccceEEEecCH--HHHHHHHH-HHHHHHhHHHH
Confidence 367799999999999999995 44666888887664 56678899999999 99999998 45444443333
Q ss_pred EEEeccC-----------------------------CCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCC-eeE--EEE
Q psy12549 95 RIMWSQR-----------------------------DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS-ILS--CKV 142 (336)
Q Consensus 95 ~v~~~~~-----------------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~--~~~ 142 (336)
.+..+.. ...........|.++|||+..+.++|..+|..|.. |.. |.+
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHm 315 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHM 315 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEE
Confidence 3321110 00011122457999999999999999999999874 333 788
Q ss_pred eeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 143 AQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 143 ~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
+.+..|+..|-|||+|.+.++|..|....+++..+.+.|.|-.+..
T Consensus 316 v~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 316 VLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred EEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 8888999999999999999999999999999999999998865543
No 96
>KOG0126|consensus
Probab=99.35 E-value=2.8e-13 Score=104.68 Aligned_cols=78 Identities=26% Similarity=0.510 Sum_probs=73.8
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.-|||+|||++.|+.||.-+|++||+|.+|.+++ .+|+++||||+.|++..+...|+..|||..+.||.|+|......
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 6799999999999999999999999999999998 89999999999999999999999999999999999999886543
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=5.6e-12 Score=103.59 Aligned_cols=76 Identities=14% Similarity=0.276 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.+|+|+||++.+|+++|+++|+.||+|.+|++++. +...++|||+|.++++|+.|+. |+|..|.|++|.|..+...
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 68999999999999999999999999999999875 4446899999999999999995 8999999999999887643
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=1.5e-11 Score=84.44 Aligned_cols=74 Identities=34% Similarity=0.608 Sum_probs=68.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
+|+|+|||..+++++|+++|+.+|.+..+.+..++.+..+++|||+|.+.++|..|+..+++..+.|+.+.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999987667789999999999999999999999999999998753
No 99
>KOG0113|consensus
Probab=99.34 E-value=4.7e-12 Score=105.43 Aligned_cols=81 Identities=26% Similarity=0.555 Sum_probs=76.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
.+.+||||.-|+++++|.+|+..|+.||+|..+.++. .+|+++|||||+|+++-+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4558999999999999999999999999999999998 79999999999999999999999999999999999999886
Q ss_pred ccc
Q psy12549 279 QKK 281 (336)
Q Consensus 279 ~~~ 281 (336)
..+
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 544
No 100
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=9.8e-12 Score=80.84 Aligned_cols=56 Identities=34% Similarity=0.677 Sum_probs=51.0
Q ss_pred HHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 220 LKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 220 l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
|+++|++||+|..+.+.+.. +++|||+|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998753 589999999999999999999999999999999986
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=1.1e-11 Score=84.42 Aligned_cols=69 Identities=38% Similarity=0.674 Sum_probs=64.7
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 115 v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
|+|||..+++++|+++|+.||.+..+.+..++ ++.++|+|||+|.+.++|..|+..+++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999887 5788999999999999999999999999999999876
No 102
>KOG0111|consensus
Probab=99.33 E-value=1.2e-12 Score=104.26 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=76.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||++|..++++.-|...|-+||.|..++++- .+++.||||||+|.-.++|..|+..||+..+.||.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 448999999999999999999999999999999887 788999999999999999999999999999999999999997
Q ss_pred cch
Q psy12549 280 KKA 282 (336)
Q Consensus 280 ~~~ 282 (336)
|..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 643
No 103
>KOG4207|consensus
Probab=99.32 E-value=3.5e-12 Score=100.68 Aligned_cols=80 Identities=19% Similarity=0.420 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
.+-..|.|-||..-++.++|+-+|++||.|-.|.|++|+ ++.++|||||.|....+|+.|+++|+|..++|+.|.|+.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 445689999999999999999999999999999999998 8889999999999999999999999999999999999776
Q ss_pred c
Q psy12549 187 I 187 (336)
Q Consensus 187 ~ 187 (336)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 104
>KOG0120|consensus
Probab=99.31 E-value=1.8e-11 Score=111.41 Aligned_cols=165 Identities=15% Similarity=0.206 Sum_probs=130.6
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
-...++|++||...++..++++. ++++.....++.+.. +|.++||||.+|.++ -.+..|+..+||..+.++.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~---~g~skg~af~ey~dp--svtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA---TGNSKGFAFCEYCDP--SVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc---cccccceeeeeeeCC--cchhhhhcccchhhhcCceeE
Confidence 33459999999999999999988 777888999999884 589999999999999 999999999999999999999
Q ss_pred EEeccCCCCcCC---C-------------------CCceEEEcCCCCCCCH-------------HHHHHHhhccCCeeEE
Q psy12549 96 IMWSQRDPSLRK---S-------------------GVGNVFIKNLDKSIDN-------------KAMYDTFSAFGSILSC 140 (336)
Q Consensus 96 v~~~~~~~~~~~---~-------------------~~~~l~v~nlp~~~t~-------------~~l~~~f~~~G~v~~~ 140 (336)
+..+........ + ....|.+.|+ +|+ ++++.-+.+||.|..|
T Consensus 363 vq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v 439 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGAVRSV 439 (500)
T ss_pred eehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCceeEE
Confidence 987544322111 0 1112222222 222 3456667899999999
Q ss_pred EEeeC-C---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 141 KVAQD-E---QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 141 ~~~~~-~---~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
.++++ . .....|..||+|.+.+++++|++.|+|..+.|+.+...+....
T Consensus 440 ~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 440 EIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred ecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 99998 3 2335678999999999999999999999999999999886543
No 105
>KOG0130|consensus
Probab=99.31 E-value=3.8e-12 Score=93.58 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
.+..-|||.++...+++++|.+.|..||+|..+.+..|+ +|-.+|||+|+|++.++|++|+..+||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 345679999999999999999999999999999999997 8999999999999999999999999999999999999997
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
-.+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 65443
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=1e-11 Score=84.52 Aligned_cols=69 Identities=48% Similarity=0.800 Sum_probs=63.6
Q ss_pred EcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 208 IKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 208 V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
|+|||..+++++|+++|+.||.|..+.+.. .++.++++|||+|.+.++|..|+..+++..+.|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999998887 357789999999999999999999999999999998873
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2.9e-11 Score=83.06 Aligned_cols=73 Identities=41% Similarity=0.728 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 205 ~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
+|+|+|||..+++++|+++|+.+|.+..+.+.. ..+.++++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999887 4446689999999999999999999999999999999864
No 108
>KOG0111|consensus
Probab=99.26 E-value=3.9e-12 Score=101.30 Aligned_cols=84 Identities=25% Similarity=0.449 Sum_probs=78.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||++|...+++.-|...|-+||.|..+.++.|. +++++|||||+|.-.+||..|+..||+.++.|+.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34789999999999999999999999999999999996 88999999999999999999999999999999999999998
Q ss_pred Cchhh
Q psy12549 188 PRKER 192 (336)
Q Consensus 188 ~~~~~ 192 (336)
|....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86543
No 109
>KOG4660|consensus
Probab=99.22 E-value=7.4e-11 Score=106.48 Aligned_cols=143 Identities=16% Similarity=0.091 Sum_probs=95.7
Q ss_pred CCCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 11 EEGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 11 ~~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
|.....+.++|+|-|||.++++++|+++| .+|++..|+..+ ..+|.+||+|.+. .+|+.|++++++..+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~--------~~~~~~~v~FyDv--R~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP--------NKRGIVFVEFYDV--RDAERALKALNRREI 137 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc--------ccCceEEEEEeeh--HhHHHHHHHHHHHHh
Confidence 44456788999999999999999999999 677777755444 4569999999999 999999999999999
Q ss_pred CCeeeEEEeccCCCC--------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCC
Q psy12549 90 KGRPIRIMWSQRDPS--------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN 149 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~--------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~ 149 (336)
.|+.+.-........ .......+++.- |++..+..-+...+.-+|.+.. .- ++.
T Consensus 138 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~----~~~ 211 (549)
T KOG4660|consen 138 AGKRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE----TPL 211 (549)
T ss_pred hhhhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc----ccc
Confidence 998877211111000 111111234433 8777777666666666776554 21 121
Q ss_pred cccEEEEEeCCHHHHHHHHH
Q psy12549 150 SKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 150 ~~g~afV~F~~~~~a~~a~~ 169 (336)
-...-|+.|.+..++..+..
T Consensus 212 ~~hq~~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 212 LNHQRFVEFADNRSYAFSEP 231 (549)
T ss_pred hhhhhhhhhccccchhhccc
Confidence 22245677777777655444
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=9.5e-11 Score=76.16 Aligned_cols=56 Identities=34% Similarity=0.624 Sum_probs=50.5
Q ss_pred HHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 127 MYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 127 l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
|+++|++||+|..+.+..+. +++|||+|.+.++|..|++.|||..+.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998753 479999999999999999999999999999999875
No 111
>KOG0130|consensus
Probab=99.21 E-value=2.1e-11 Score=89.65 Aligned_cols=78 Identities=26% Similarity=0.446 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
--|||.++.+.+++++|.+.|..||+|.++++.- .+|..+|||+|+|.+..+|++|+..+||..+-|..+.|.|+-.+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 3589999999999999999999999999988765 88999999999999999999999999999999999999998544
No 112
>KOG0108|consensus
Probab=99.19 E-value=6.3e-11 Score=107.25 Aligned_cols=83 Identities=30% Similarity=0.595 Sum_probs=77.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
+.+||+|+|+++++++|..+|+..|.|.++++.. .+|+.+||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999887 89999999999999999999999999999999999999999876
Q ss_pred hhhHH
Q psy12549 282 AERTQ 286 (336)
Q Consensus 282 ~~~~~ 286 (336)
..+..
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 55443
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=99.18 E-value=1.2e-10 Score=79.37 Aligned_cols=60 Identities=23% Similarity=0.443 Sum_probs=52.1
Q ss_pred HHHHHHhhc----cCCceeEEE-EeC--CC--CccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 217 DEKLKEMFE----PYGTITSYR-VMN--ND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 217 ~~~l~~~f~----~~g~i~~~~-i~~--~~--~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
+++|+++|+ .||.|.++. +.. .+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999999985 332 44 8889999999999999999999999999999999873
No 114
>KOG0108|consensus
Probab=99.18 E-value=8.7e-11 Score=106.35 Aligned_cols=82 Identities=30% Similarity=0.547 Sum_probs=77.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
+.+||+|+|+++++++|..+|+..|.|..++++.|+ +|..+||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 779999999999999999999999999999999998 8999999999999999999999999999999999999998766
Q ss_pred hhh
Q psy12549 190 KER 192 (336)
Q Consensus 190 ~~~ 192 (336)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.18 E-value=1.8e-10 Score=78.47 Aligned_cols=60 Identities=23% Similarity=0.437 Sum_probs=53.3
Q ss_pred HHHHHHHhh----ccCCeeEEE-EeeCC-C--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 124 NKAMYDTFS----AFGSILSCK-VAQDE-Q--GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 124 ~~~l~~~f~----~~G~v~~~~-~~~~~-~--~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
+++|+++|+ .||.|..+. ++.++ + +.++|+|||.|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888888 999999995 65554 4 889999999999999999999999999999999876
No 116
>KOG0128|consensus
Probab=99.17 E-value=2.8e-12 Score=120.63 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=180.1
Q ss_pred cCceeeeecCchhhhhhh-HHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 17 PKHNVATRELSAKVVEGV-SRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~-l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
..+...+.++.+.....+ .+..| ..+.++.++....+.. -..-.++++.+... ..|+.|.. ..+..+.++..
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k---~h~q~~~~~~~s~~--~~~esat~-pa~~~~a~~~~ 643 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFK---AHEQPQQQKVQSKH--GSAESATV-PAGGALANRSA 643 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCcccccc---ccccchhhhhhccc--cchhhccc-ccccccCCccc
Confidence 344566777777776664 55566 6667777777663211 11222789999999 99988887 77778888887
Q ss_pred EEEeccCCCCcCCC--------CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHH
Q psy12549 95 RIMWSQRDPSLRKS--------GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAAN 165 (336)
Q Consensus 95 ~v~~~~~~~~~~~~--------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~ 165 (336)
.+..+......... ...++|++||+..+.+.+|...|..+|.+..+.+.... .+.-+|+||+.|..++++.
T Consensus 644 av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 644 AVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred cCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 77766554432211 23489999999999999999999999988877776333 5678899999999999999
Q ss_pred HHHHHhCCceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccce
Q psy12549 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRG 244 (336)
Q Consensus 166 ~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g 244 (336)
+|+...+++.++ ...++|+|.|+..|.++++.+++.+|.+.+..++. ..|+++|
T Consensus 724 aaV~f~d~~~~g-------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg 778 (881)
T KOG0128|consen 724 AAVAFRDSCFFG-------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKG 778 (881)
T ss_pred hhhhhhhhhhhh-------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccccc
Confidence 999965544443 14589999999999999999999999999998776 8899999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 245 ~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
-|+|.|.++.++.++....++..+.-+.+.+..+.+
T Consensus 779 ~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 779 KARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999999999988888887766666665433
No 117
>KOG0129|consensus
Probab=99.16 E-value=9.3e-10 Score=98.67 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=113.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--C--CCccc---EEEEEeCCHHHHHHHHHHhCC----c---
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE--Q--GNSKG---YGFVHFETEEAANKSIEKVNG----M--- 174 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~--~--~~~~g---~afV~F~~~~~a~~a~~~l~~----~--- 174 (336)
..++|||++||.+++|+.|...|..||.+. +.++... . -..+| |+|+.|+++...+.-+.++.- .
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 457899999999999999999999999866 4555211 1 23456 999999999999887776532 1
Q ss_pred ----eeCCeEEEEeeccCchhh-hHhhhccccccceEEEcCCCCCCcHHHHHHhhc-cCCceeEEEEeC--CCCccceEE
Q psy12549 175 ----LLNSKIVFVGKFIPRKER-EKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE-PYGTITSYRVMN--NDGKSRGFG 246 (336)
Q Consensus 175 ----~~~~~~i~v~~~~~~~~~-~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~g~i~~~~i~~--~~~~~~g~a 246 (336)
.+..+.+.+..+...+.. -........+.+||||++||..++.++|..+|+ -||.|..+-|-. .-+.++|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 112333443333322211 111333445668999999999999999999998 899999988866 445678999
Q ss_pred EEEeCCHHHHHHHHHH
Q psy12549 247 FVAYESPEFAEKAVQA 262 (336)
Q Consensus 247 fV~F~~~~~a~~a~~~ 262 (336)
-|+|.+..+-.+||..
T Consensus 417 RVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISA 432 (520)
T ss_pred eeeecccHHHHHHHhh
Confidence 9999999999999975
No 118
>KOG0129|consensus
Probab=99.13 E-value=1.5e-09 Score=97.33 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=112.4
Q ss_pred CCCccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCc---eEEEEEeCCcchhhHHHHHhhcCc-
Q psy12549 11 EEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGS---GAILVQLGQPYMLDTERALDTMNF- 86 (336)
Q Consensus 11 ~~~~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~---g~afV~f~~~~~~~A~~A~~~~~~- 86 (336)
..+..+..+.|+||+||++++|+.|...|...+...|-.....+..-.-..+ ||+|+.|+.+ ...+.-+..+..
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E--~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDE--RSVQSLLSACSEG 329 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecch--HHHHHHHHHHhhc
Confidence 3446677889999999999999999999955544444333222111111234 5999999999 877775554432
Q ss_pred ---c-------ccCCeeeEEEe-ccCC------CCcCCCCCceEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeeCC-C
Q psy12549 87 ---D-------ALKGRPIRIMW-SQRD------PSLRKSGVGNVFIKNLDKSIDNKAMYDTFS-AFGSILSCKVAQDE-Q 147 (336)
Q Consensus 87 ---~-------~~~g~~i~v~~-~~~~------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~~-~ 147 (336)
. .++.+.+.|.+ -..+ ....-+..+||||++||.-++.++|-.+|+ .||.|..+-|-.|+ -
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 1 11223344432 1111 112233457999999999999999999999 79999999999994 6
Q ss_pred CCcccEEEEEeCCHHHHHHHHHH
Q psy12549 148 GNSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 148 ~~~~g~afV~F~~~~~a~~a~~~ 170 (336)
+-.+|-|-|.|.+..+-.+|+.+
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 77899999999999999999984
No 119
>KOG4454|consensus
Probab=99.12 E-value=3e-11 Score=96.30 Aligned_cols=143 Identities=21% Similarity=0.344 Sum_probs=121.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||.|+...++++-|.++|-..|+|..+.|+.++++..+ ||||.|.++....-|++.+||..+.+..+.++.-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34579999999999999999999999999999999999988778 99999999999999999999999999888775432
Q ss_pred CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
.... .-|...++++.+...|+.-|++..+++.. .+|.++.++|+.+....+...++...++.
T Consensus 86 G~sh-----------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 86 GNSH-----------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred CCCc-----------------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 2110 01456678889999999999999999988 67889999999999888888888877765
Q ss_pred ee
Q psy12549 267 EV 268 (336)
Q Consensus 267 ~~ 268 (336)
..
T Consensus 149 ~~ 150 (267)
T KOG4454|consen 149 EL 150 (267)
T ss_pred Cc
Confidence 53
No 120
>KOG0112|consensus
Probab=99.05 E-value=9.5e-11 Score=110.97 Aligned_cols=165 Identities=19% Similarity=0.311 Sum_probs=139.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..+++||++||+..+++.+|+..|..+|.+.+|.+-....+.-..|+||.|.+...+-.|+..+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 34679999999999999999999999999999998887655556699999999999999999998888866555554433
Q ss_pred CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKE 267 (336)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~ 267 (336)
+ .....+.+++++|+..+....|..+|..||+|..|.+-.. ..||+|.|.+...|+.|+..|.|..
T Consensus 450 ~----------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 450 P----------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----QPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred c----------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----CcceeeecccCccchhhHHHHhcCc
Confidence 2 2233477999999999999999999999999999888543 6799999999999999999999999
Q ss_pred ecC--EEEEEeecccchhhHH
Q psy12549 268 VDG--KILYVGRAQKKAERTQ 286 (336)
Q Consensus 268 ~~g--~~l~v~~~~~~~~~~~ 286 (336)
++| ++++|.|+..-....+
T Consensus 516 ~G~P~~r~rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASPPGATPQ 536 (975)
T ss_pred CCCCCcccccccccCCCCChh
Confidence 987 7899999876644433
No 121
>KOG4454|consensus
Probab=99.01 E-value=1.1e-10 Score=93.21 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=122.4
Q ss_pred CccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC
Q psy12549 13 GIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG 91 (336)
Q Consensus 13 ~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g 91 (336)
.....+++|+|+|+-..++|+.|-++| ..|+|..|.+..+++ +..+ ||||.|.++ -....|+..+||..+.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----~~~k-Fa~v~f~~E--~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----QEQK-FAYVFFPNE--NSVQLAGQLENGDDLEE 76 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----CCCc-eeeeecccc--cchhhhhhhcccchhcc
Confidence 345668999999999999999999999 777888898888774 4455 999999999 99999999999999999
Q ss_pred eeeEEEeccCCCCcCCCCCceEEEcC----CCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHH
Q psy12549 92 RPIRIMWSQRDPSLRKSGVGNVFIKN----LDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167 (336)
Q Consensus 92 ~~i~v~~~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a 167 (336)
+++.+.+ +.++ |....+++.+...|+..|++..+++..+.+|+.+.++|+.+...-..-.+
T Consensus 77 ~e~q~~~---------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 77 DEEQRTL---------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred chhhccc---------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 9888664 3333 45668999999999999999999999998888888999988777777777
Q ss_pred HHHhCCceeCCeEEEE
Q psy12549 168 IEKVNGMLLNSKIVFV 183 (336)
Q Consensus 168 ~~~l~~~~~~~~~i~v 183 (336)
+....+....-+++.+
T Consensus 142 ~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 142 LDLYQGLELFQKKVTI 157 (267)
T ss_pred hhhhcccCcCCCCccc
Confidence 7766666554444433
No 122
>KOG0128|consensus
Probab=98.98 E-value=6.4e-11 Score=111.63 Aligned_cols=146 Identities=16% Similarity=0.053 Sum_probs=122.2
Q ss_pred ceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEE
Q psy12549 19 HNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIM 97 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~ 97 (336)
-++|+.||++.+.+.++...| ..+.+..+.+.... ..++-+|+||++|..+ ++|.+|+...++..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~---n~~~~rG~~Y~~F~~~--~~~~aaV~f~d~~~~g------- 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK---NEKRFRGKAYVEFLKP--EHAGAAVAFRDSCFFG------- 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh---hccccccceeeEeecC--Cchhhhhhhhhhhhhh-------
Confidence 468999999999999999988 55555555555333 3678899999999999 9999999944444333
Q ss_pred eccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q psy12549 98 WSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN 177 (336)
Q Consensus 98 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~ 177 (336)
...++|+|.|...|.++++.+++.+|++....++..+.|+.+|.|+|.|.++.+|.+++...+...+.
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhh
Confidence 13499999999999999999999999999999999999999999999999999999999988888777
Q ss_pred CeEEEEeeccC
Q psy12549 178 SKIVFVGKFIP 188 (336)
Q Consensus 178 ~~~i~v~~~~~ 188 (336)
.+.+.+..++|
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 77777766555
No 123
>KOG4208|consensus
Probab=98.97 E-value=2.5e-09 Score=84.96 Aligned_cols=83 Identities=28% Similarity=0.532 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAF-GSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....-+++..+|..+.+.++...|.+| |.+..+++-+++ +|+|+|||||+|++++.|.-|-+.||+-.+.++-|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445679999999999999999999999 788888887876 99999999999999999999999999999999999998
Q ss_pred eccCc
Q psy12549 185 KFIPR 189 (336)
Q Consensus 185 ~~~~~ 189 (336)
...+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87666
No 124
>KOG0226|consensus
Probab=98.97 E-value=7.6e-10 Score=90.43 Aligned_cols=178 Identities=20% Similarity=0.332 Sum_probs=133.0
Q ss_pred EEEcCCCCCCCHHH---HHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 113 VFIKNLDKSIDNKA---MYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 113 l~v~nlp~~~t~~~---l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
.++.++-..+..+- +...|+.+-.+...+++++..+.-.+++|+.|.....-.++-..-++..++-..++......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts- 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS- 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc-
Confidence 44555544333332 36778888778888888888888889999999988777777766666677666655432221
Q ss_pred hhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 190 KEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKE 267 (336)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~ 267 (336)
-..............||.+.|..+++.+-|...|.+|-.-...++++ .+|+++||+||.|.++.++.+|+..|+|..
T Consensus 178 -wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 178 -WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred -cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 12223333444447899999999999999999999998888788877 889999999999999999999999999999
Q ss_pred ecCEEEEEeecccchhhHHHHHHHH
Q psy12549 268 VDGKILYVGRAQKKAERTQELKRRF 292 (336)
Q Consensus 268 ~~g~~l~v~~~~~~~~~~~~~~~~~ 292 (336)
++.+.|.++.+.-+........+.+
T Consensus 257 VgsrpiklRkS~wkeRn~dvv~kk~ 281 (290)
T KOG0226|consen 257 VGSRPIKLRKSEWKERNLDVVKKKQ 281 (290)
T ss_pred cccchhHhhhhhHHhhhhHHHhHHH
Confidence 9999999987766654444433333
No 125
>KOG0226|consensus
Probab=98.96 E-value=1e-09 Score=89.63 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=120.5
Q ss_pred eeecCchhhhhhh-H--Hhhhccc-CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEE
Q psy12549 22 ATRELSAKVVEGV-S--RSLSSLI-DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIM 97 (336)
Q Consensus 22 ~v~~lp~~~~e~~-l--~~~f~~~-~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~ 97 (336)
+++++-+.+..+- + -..|+.. .....++.+++ .+.-++++|+.|... ..-.++-..-++..+...++++.
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~----p~~~~~~~~~~~k~s--~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR----PQPIRPEAFESFKAS--DALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcC----CCccCcccccCcchh--hhhhhhccccccccccCcceeec
Confidence 3445444444433 2 2334333 23344455544 356788999999888 77777777677778887777774
Q ss_pred ----eccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhC
Q psy12549 98 ----WSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVN 172 (336)
Q Consensus 98 ----~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~ 172 (336)
|..+....+.....+||.+.|...++.+-|-..|.+|-.-...++++++ +|+++||+||.|.++.++..|+..++
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 4444444555667799999999999999999999999988888899986 99999999999999999999999999
Q ss_pred CceeCCeEEEEeec
Q psy12549 173 GMLLNSKIVFVGKF 186 (336)
Q Consensus 173 ~~~~~~~~i~v~~~ 186 (336)
|.+++.+.|.+..+
T Consensus 254 gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKS 267 (290)
T ss_pred ccccccchhHhhhh
Confidence 99999999988543
No 126
>KOG0132|consensus
Probab=98.91 E-value=2e-09 Score=100.58 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=79.5
Q ss_pred ceeccCCCCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhh
Q psy12549 5 QTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDT 83 (336)
Q Consensus 5 ~~~~~~~~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~ 83 (336)
..+.++++.+..-+||||||+||..++|.||.++| .++.+.+|.++..+ |+|||.+.+. ++|.+|+.+
T Consensus 408 glP~I~pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R---------~cAfI~M~~R--qdA~kalqk 476 (894)
T KOG0132|consen 408 GLPTIPPDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR---------GCAFIKMVRR--QDAEKALQK 476 (894)
T ss_pred cCCCCCCcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC---------ceeEEEEeeh--hHHHHHHHH
Confidence 45667788888999999999999999999999999 89999999999755 7899999999 999999999
Q ss_pred cCccccCCeeeEEEeccCC
Q psy12549 84 MNFDALKGRPIRIMWSQRD 102 (336)
Q Consensus 84 ~~~~~~~g~~i~v~~~~~~ 102 (336)
|.+..+.++.|+|.|+-..
T Consensus 477 l~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 477 LSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred HhcccccceeeEEeeeccC
Confidence 9999999999999997554
No 127
>KOG0112|consensus
Probab=98.91 E-value=1.7e-09 Score=102.71 Aligned_cols=165 Identities=16% Similarity=0.096 Sum_probs=134.5
Q ss_pred CCCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 11 EEGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 11 ~~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
+....+-+++|+++||+..+++.+++..| .++.+..|.+..-. .++...||||.|.+. ..+-.|...+.+..|
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----~~~esa~~f~~~~n~--dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----IKTESAYAFVSLLNT--DMTPSAKFEESGPLI 438 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----CCcccchhhhhhhcc--ccCcccchhhcCCcc
Confidence 34455778999999999999999999999 66677777776654 356778899999999 999999999999887
Q ss_pred CCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy12549 90 KGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~ 169 (336)
..-.+++..... .....+.+++++|+.++....|...|..||.|..+.+-.. ..|||++|++...|+.|+.
T Consensus 439 ~~g~~r~glG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 439 GNGTHRIGLGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccCccccccccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHH
Confidence 655555555432 2233477999999999999999999999999998776543 5699999999999999999
Q ss_pred HhCCceeCC--eEEEEeeccCch
Q psy12549 170 KVNGMLLNS--KIVFVGKFIPRK 190 (336)
Q Consensus 170 ~l~~~~~~~--~~i~v~~~~~~~ 190 (336)
.+-|..+++ +.+.|.++.+..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HHhcCcCCCCCcccccccccCCC
Confidence 999999865 677777766543
No 128
>KOG0415|consensus
Probab=98.90 E-value=2.5e-09 Score=91.31 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=77.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
++.+.|||..|.+-++.++|.-+|+.||.|.+|.+++ .+|.+-.||||+|.+.++.++|.-.|++.-|++++|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4558899999999999999999999999999999998 78889999999999999999999999999999999999998
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.+-.+
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76544
No 129
>KOG0415|consensus
Probab=98.89 E-value=3.3e-09 Score=90.62 Aligned_cols=83 Identities=25% Similarity=0.482 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
....|||-.|.+-++.++|.-+|+.||.|.+|.++++. +|.+..||||+|++.+++.+|.-.|++..|+++.|+|.++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 34679999999999999999999999999999999997 89999999999999999999999999999999999998876
Q ss_pred Cchh
Q psy12549 188 PRKE 191 (336)
Q Consensus 188 ~~~~ 191 (336)
+-..
T Consensus 318 SVsk 321 (479)
T KOG0415|consen 318 SVSK 321 (479)
T ss_pred hhhh
Confidence 5443
No 130
>KOG4210|consensus
Probab=98.88 E-value=1.5e-09 Score=93.96 Aligned_cols=173 Identities=20% Similarity=0.260 Sum_probs=135.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...+.|++++...+.+.+...++..+|......+.... ...++|++++.|...+.+..|+.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45789999999999999999999999977766665543 67789999999999999999999544345555555443333
Q ss_pred Cchhhh--HhhhccccccceEE-EcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHH
Q psy12549 188 PRKERE--KELGEKAKLFTNVY-IKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQA 262 (336)
Q Consensus 188 ~~~~~~--~~~~~~~~~~~~l~-V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~ 262 (336)
...... ...........+++ |.|++..+++++|+..|..+|.|..+++.. .++...++|++.|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 332111 11111222224455 999999999999999999999999999987 7888999999999999999999987
Q ss_pred hCCceecCEEEEEeecccch
Q psy12549 263 WNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 263 l~g~~~~g~~l~v~~~~~~~ 282 (336)
+...+.++++.+.+..+..
T Consensus 247 -~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred -ccCcccCcccccccCCCCc
Confidence 8899999999999987764
No 131
>KOG0132|consensus
Probab=98.84 E-value=7.5e-09 Score=96.88 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
+||||++|+..+++.||.++|+.||+|.+|.++.. +++|||.+.+.++|.+|+.+|++..+.++.|++.|+..+.-
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 79999999999999999999999999999999864 99999999999999999999999999999999999987754
Q ss_pred hH
Q psy12549 284 RT 285 (336)
Q Consensus 284 ~~ 285 (336)
..
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 43
No 132
>KOG4208|consensus
Probab=98.83 E-value=1.1e-08 Score=81.32 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=72.0
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccC-CceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPY-GTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~-g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.-+++..+|..+.+.++..+|.+| |.+.++++.+ .+|+++|||||+|++++.|.-|.+.||+.-+.|+.|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 568999999999999999999988 7788888855 8999999999999999999999999999999999999999877
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 6
No 133
>KOG4210|consensus
Probab=98.82 E-value=6.4e-09 Score=90.09 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=130.3
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
-..+.+++++...+.+.+...++ ..+......+....+ ...++|++++.|... +++..|+.........++.+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~---~~~sk~~~s~~f~~k--s~~~~~l~~s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED---SLSSKGGLSVHFAGK--SQFFAALEESGSKVLDGNKGE 161 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc---ccccccceeeccccH--HHHHHHHHhhhcccccccccc
Confidence 46679999999999999888877 666566665555443 367999999999999 999999984333344333333
Q ss_pred EEec--------cCCCCcCCCCCceEE-EcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHH
Q psy12549 96 IMWS--------QRDPSLRKSGVGNVF-IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAAN 165 (336)
Q Consensus 96 v~~~--------~~~~~~~~~~~~~l~-v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~ 165 (336)
.... ............+++ +++++.+++.++|+.+|..+|.|..++++.++ ++.++|+||+.|.....+.
T Consensus 162 ~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 162 KDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred CcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 2221 111122333445666 99999999999999999999999999999987 7899999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 166 KSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 166 ~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
.++.. ....+.++++.+....+...
T Consensus 242 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 242 LALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHhhc-ccCcccCcccccccCCCCcc
Confidence 99997 88889999999987766543
No 134
>KOG0153|consensus
Probab=98.75 E-value=2.7e-08 Score=85.03 Aligned_cols=74 Identities=26% Similarity=0.497 Sum_probs=66.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHh-CCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW-NGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l-~g~~~~g~~l~v~~~~~ 280 (336)
..+|||++|...+++.+|++.|.+||+|+.+.+... +++|||+|.+.++|+.|.+.. +...++|.+|.+.|+.+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 378999999999999999999999999999999875 668999999999999987664 55667999999999988
No 135
>KOG4661|consensus
Probab=98.74 E-value=2.9e-08 Score=89.95 Aligned_cols=80 Identities=24% Similarity=0.438 Sum_probs=73.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|+|.+|...+...+|+++|++||.|...+++.+. +...++|+||++.+.++|-+|+..|+...+.|+-|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 4689999999999999999999999999999999985 445788999999999999999999999999999999988765
Q ss_pred c
Q psy12549 189 R 189 (336)
Q Consensus 189 ~ 189 (336)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 4
No 136
>KOG0153|consensus
Probab=98.72 E-value=5e-08 Score=83.45 Aligned_cols=75 Identities=29% Similarity=0.463 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV-NGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~ 187 (336)
...+|||+||.+.+++.+|+++|.+||+|.++.+... +++|||+|.+.+.|..|...+ +...+.|+.|.+.|..
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3468999999999999999999999999999998874 569999999999999988754 5566899999999988
Q ss_pred C
Q psy12549 188 P 188 (336)
Q Consensus 188 ~ 188 (336)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 137
>KOG0533|consensus
Probab=98.68 E-value=1.1e-07 Score=79.61 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=75.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
..+|+|.|||+.++.+||+++|..||.+..+.+..++.|.+.|.|-|.|...+||..|++.+++..++|+.+.+....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999988776554
Q ss_pred h
Q psy12549 190 K 190 (336)
Q Consensus 190 ~ 190 (336)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 138
>KOG4660|consensus
Probab=98.56 E-value=6.9e-08 Score=87.64 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=111.5
Q ss_pred CCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q psy12549 101 RDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI 180 (336)
Q Consensus 101 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~ 180 (336)
.++.......++|+|-|||.++++++|..+|+.||+|.+++.-+. ..|.+||+|-+..+|++|++.|++..+.|+.
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 344444556789999999999999999999999999999766554 4679999999999999999999999999988
Q ss_pred EEEeeccCchhhh----------------HhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccce
Q psy12549 181 VFVGKFIPRKERE----------------KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRG 244 (336)
Q Consensus 181 i~v~~~~~~~~~~----------------~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g 244 (336)
+............ ...+... ..+++. .|++..+...+...++.+|.+.. +.. +.-..
T Consensus 142 ~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~--~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~---~~~~h 214 (549)
T KOG4660|consen 142 IKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWP--RGQLFG-MLSPTRSSILLEHISSVDGSSPG-RET---PLLNH 214 (549)
T ss_pred hcCCCcccccchhcccchhhhhccchhhcCCCCCCc--CCccee-eeccchhhhhhhcchhccCcccc-ccc---cchhh
Confidence 8832211111000 0000001 122332 27777777667777777777655 322 22222
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 245 ~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
.-++.|.+..++..+.... |..+.+.....+++.
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~ 248 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSG 248 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecCCCCceEEecC
Confidence 4667888877775555533 555665555555543
No 139
>KOG4676|consensus
Probab=98.54 E-value=1.2e-07 Score=82.28 Aligned_cols=199 Identities=9% Similarity=0.027 Sum_probs=129.3
Q ss_pred eeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEe
Q psy12549 20 NVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMW 98 (336)
Q Consensus 20 ~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~ 98 (336)
.|.|.||.+++|.++++.+| -.|.+.++++..+.+..........|||.|.+. ..+..|-. |.++.|-++.+.|.+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~--~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDS--QSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCC--cceeHHhh-hccceeeeeeEEEEe
Confidence 58899999999999999999 556888999988655555566778899999999 88877766 777877777766665
Q ss_pred ccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 99 SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 99 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
.... +-++.. +|..++.-..+-=...+ +|..+..
T Consensus 86 ~~~~-------------------~~p~r~--af~~l~~~navprll~p-------------------------dg~Lp~~ 119 (479)
T KOG4676|consen 86 YGDE-------------------VIPDRF--AFVELADQNAVPRLLPP-------------------------DGVLPGD 119 (479)
T ss_pred cCCC-------------------CCccHH--HHHhcCcccccccccCC-------------------------CCccCCC
Confidence 4322 111121 45555433322111111 1111111
Q ss_pred eEEEEe-------eccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeC
Q psy12549 179 KIVFVG-------KFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYE 251 (336)
Q Consensus 179 ~~i~v~-------~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~ 251 (336)
.++... ...|...............++++|.+|+..+...++.+.|..+|++.+.++- .+....+|.+.|.
T Consensus 120 ~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a--sk~~s~~c~~sf~ 197 (479)
T KOG4676|consen 120 RPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTA--SKSRSSSCSHSFR 197 (479)
T ss_pred CccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh--ccCCCcchhhhHh
Confidence 111000 0001111111222222333789999999999999999999999998777664 3344567889999
Q ss_pred CHHHHHHHHHHhCCceecC
Q psy12549 252 SPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 252 ~~~~a~~a~~~l~g~~~~g 270 (336)
...+...|+. ++|..+.-
T Consensus 198 ~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 198 KQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhHHHHHH-hcchhhhh
Confidence 9888888887 58888763
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=9.1e-07 Score=63.28 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=63.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAF--GSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLN----SKIVFV 183 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~----~~~i~v 183 (336)
+||+|+|||...|.++|.+++... |...-+-++.|. ++.+.|||||.|.++++|.+..+.++|..+. .+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988664 556667788875 6778999999999999999999999998874 344455
Q ss_pred eecc
Q psy12549 184 GKFI 187 (336)
Q Consensus 184 ~~~~ 187 (336)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5543
No 141
>KOG0533|consensus
Probab=98.52 E-value=3.1e-07 Score=76.82 Aligned_cols=78 Identities=28% Similarity=0.447 Sum_probs=71.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
..|+|.|||+.++++||+++|..||.+..+.+-. ..|.+.|.|-|.|...++|.+|++.++|..++|+.|.+....+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 6799999999999999999999999888887766 88999999999999999999999999999999999888776544
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.52 E-value=1e-06 Score=62.99 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=64.3
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccC--CceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceec----CEEEEE
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPY--GTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD----GKILYV 275 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~--g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~----g~~l~v 275 (336)
+||.|+|+|...+.++|.+++... |...-+.++- .++.+.|||||.|.+++.|.+-.+.++|..+. .+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888643 3444444433 67788999999999999999999999999985 477888
Q ss_pred eecccch
Q psy12549 276 GRAQKKA 282 (336)
Q Consensus 276 ~~~~~~~ 282 (336)
.||.-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887553
No 143
>KOG4661|consensus
Probab=98.46 E-value=3.7e-07 Score=82.96 Aligned_cols=78 Identities=22% Similarity=0.502 Sum_probs=71.0
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
+.|+|.+|...+...+|+.+|++||.|.-.+++. .+...+-|+||++.+.++|.++|..||-..+.|+.|.|..++..
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 6799999999999999999999999999999887 33445889999999999999999999999999999999988654
No 144
>KOG0116|consensus
Probab=98.39 E-value=7.4e-07 Score=80.63 Aligned_cols=79 Identities=24% Similarity=0.404 Sum_probs=68.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..+|||+|||.+++.++|+++|..||+|....|.... .+...+||||+|.+.++++.|+.+ +...++++++.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 3469999999999999999999999999998777654 444558999999999999999996 68889999999976554
Q ss_pred c
Q psy12549 189 R 189 (336)
Q Consensus 189 ~ 189 (336)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 145
>KOG0151|consensus
Probab=98.38 E-value=8.9e-07 Score=82.54 Aligned_cols=80 Identities=23% Similarity=0.432 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCC----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ----GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
..+++||+||++.++++.|...|..||++..++++..++ ...+.++||-|.+..||++|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 357899999999999999999999999999999998763 3445689999999999999999999999999999998
Q ss_pred eccC
Q psy12549 185 KFIP 188 (336)
Q Consensus 185 ~~~~ 188 (336)
|...
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 8743
No 146
>KOG0151|consensus
Probab=98.35 E-value=6e-07 Score=83.66 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=71.9
Q ss_pred cccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCee
Q psy12549 15 IIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRP 93 (336)
Q Consensus 15 ~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~ 93 (336)
...++||||+||+++++|..|..-| .+|++.++++.+.+----..+.+-++||-|-+. .+|+.|++.|+|..+.+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR--~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNR--ADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhh--hhHHHHHHHhcceeeeeee
Confidence 4567889999999999999999988 888999999988753323345666789999999 9999999999999999999
Q ss_pred eEEEec
Q psy12549 94 IRIMWS 99 (336)
Q Consensus 94 i~v~~~ 99 (336)
+++-|.
T Consensus 249 ~K~gWg 254 (877)
T KOG0151|consen 249 MKLGWG 254 (877)
T ss_pred eeeccc
Confidence 999997
No 147
>KOG2193|consensus
Probab=98.34 E-value=7.3e-08 Score=84.39 Aligned_cols=153 Identities=24% Similarity=0.383 Sum_probs=123.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEeeccCc
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGS-ILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM-LLNSKIVFVGKFIPR 189 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~-~~~~~~i~v~~~~~~ 189 (336)
.+|++||.+..+.++|..+|..... ...-.++ ..||+||...+...|.+|++.++|. .+.|+.+.+..+.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4899999999999999999976421 1111222 2479999999999999999999986 589999999888777
Q ss_pred hhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceec
Q psy12549 190 KEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD 269 (336)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~ 269 (336)
..+. +.+-++|+|.....+-|-.+...||.+..|...... ..+-..-|+|.+.+.+..|+..++|..+.
T Consensus 77 kqrs----------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~-~etavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 77 KQRS----------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD-SETAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HHHh----------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc-hHHHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 6544 458899999999999999999999999998775411 11222347899999999999999999999
Q ss_pred CEEEEEeecccc
Q psy12549 270 GKILYVGRAQKK 281 (336)
Q Consensus 270 g~~l~v~~~~~~ 281 (336)
...+.+.|-...
T Consensus 146 n~~~k~~YiPde 157 (584)
T KOG2193|consen 146 NQHLKVGYIPDE 157 (584)
T ss_pred hhhhhcccCchh
Confidence 999999886544
No 148
>KOG0116|consensus
Probab=98.32 E-value=1e-06 Score=79.79 Aligned_cols=77 Identities=27% Similarity=0.508 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.+|||.|||.+++..+|.++|..||+|....|.. ..+++..||||+|.+.++++.|+.+ +-..++|++|.|+--.+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 5699999999999999999999999999877765 2355559999999999999999986 688899999999776543
No 149
>KOG4209|consensus
Probab=98.27 E-value=1.6e-06 Score=72.80 Aligned_cols=82 Identities=20% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
......+||+|+...+|.+++...|+.+|.+..+.++.+. .|+++||+||+|.+.+.+..++. |++..+.|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3455789999999999999999999999999999999998 67899999999999999999999 999999999999987
Q ss_pred ccCc
Q psy12549 186 FIPR 189 (336)
Q Consensus 186 ~~~~ 189 (336)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6544
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.20 E-value=8.5e-06 Score=55.52 Aligned_cols=70 Identities=23% Similarity=0.412 Sum_probs=47.8
Q ss_pred ceEEEcCCCCCCcHHH----HHHhhccCCc-eeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 204 TNVYIKNFGEDFNDEK----LKEMFEPYGT-ITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~----l~~~f~~~g~-i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
..|+|.|||.+.+... |++++..+|. |..+ . .+.|+|.|.+.+.|.+|.+.|+|....|+.|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4589999999887754 5677777874 4333 1 456999999999999999999999999999999998
Q ss_pred ccc
Q psy12549 279 QKK 281 (336)
Q Consensus 279 ~~~ 281 (336)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 543
No 151
>KOG2193|consensus
Probab=98.19 E-value=1.2e-07 Score=83.13 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=119.0
Q ss_pred ceeeeecCchhhhhhhHHhhhcccCC-ceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcc-ccCCeeeEE
Q psy12549 19 HNVATRELSAKVVEGVSRSLSSLIDG-NTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFD-ALKGRPIRI 96 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f~~~~~-~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~-~~~g~~i~v 96 (336)
..+|++||.+.++-++++++|....+ .+-.+.. ..|||||.+... .-|.+|++.++|. .+.|+.+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~---------k~gyafvd~pdq--~wa~kaie~~sgk~elqGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV---------KSGYAFVDCPDQ--QWANKAIETLSGKVELQGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee---------ecceeeccCCch--hhhhhhHHhhchhhhhcCceeec
Confidence 35899999999999999999944422 1222222 238899999999 9999999999995 788999888
Q ss_pred EeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 97 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL 176 (336)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~ 176 (336)
..+.++.. ..+.+-|+|+|+....+-|..+...||++..|......+. ....=|+|.+.+.++.|+..|+|..+
T Consensus 71 ~~sv~kkq----rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 71 EHSVPKKQ----RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred cchhhHHH----HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 77554332 2366999999999999999999999999998876544321 11233788899999999999999999
Q ss_pred CCeEEEEeecc
Q psy12549 177 NSKIVFVGKFI 187 (336)
Q Consensus 177 ~~~~i~v~~~~ 187 (336)
.+..+.+.+..
T Consensus 145 en~~~k~~YiP 155 (584)
T KOG2193|consen 145 ENQHLKVGYIP 155 (584)
T ss_pred hhhhhhcccCc
Confidence 88888886643
No 152
>KOG4209|consensus
Probab=98.11 E-value=6e-06 Score=69.37 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=71.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..+.++|+|+.+.++.+++...|+.||.+..+.+.. ..+.++|+|||+|.+.+.+..|+. |+|..+.|+.+.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 347899999999999999999999999999888776 566789999999999999999999 99999999999998865
Q ss_pred cc
Q psy12549 280 KK 281 (336)
Q Consensus 280 ~~ 281 (336)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 44
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.06 E-value=2.3e-05 Score=57.48 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=46.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCc-----eecCEEEEEeec
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGK-----EVDGKILYVGRA 278 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~-----~~~g~~l~v~~~ 278 (336)
+.|++.+++..++.++|++.|+.||+|.+|.+... ...|+|.|.++++|++|+..+... .+.+..+.++..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 35889999999999999999999999999999763 345999999999999999877543 566666666665
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.....
T Consensus 78 eGeeE 82 (105)
T PF08777_consen 78 EGEEE 82 (105)
T ss_dssp -HHHH
T ss_pred CCHHH
Confidence 54433
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.92 E-value=3.9e-05 Score=52.31 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=45.4
Q ss_pred ceeeeecCchhhhhhhHHh----hhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 19 HNVATRELSAKVVEGVSRS----LSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~----~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
+.|+|.|||.+.+-..|+. ++...++.-+.+.. +.|.|.|.+. +.|..|.+.++|..+.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~~-----------~tAilrF~~~--~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVSG-----------GTAILRFPNQ--EFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--T-----------T-EEEEESSH--HHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEeC-----------CEEEEEeCCH--HHHHHHHHhhcccccccceE
Confidence 4689999999887777655 55333333333332 4499999999 99999999999999999999
Q ss_pred EEEeccCC
Q psy12549 95 RIMWSQRD 102 (336)
Q Consensus 95 ~v~~~~~~ 102 (336)
.|++....
T Consensus 70 ~v~~~~~~ 77 (90)
T PF11608_consen 70 SVSFSPKN 77 (90)
T ss_dssp EEESS--S
T ss_pred EEEEcCCc
Confidence 99987543
No 155
>KOG4676|consensus
Probab=97.91 E-value=1e-05 Score=70.52 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=93.5
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCC-----ccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG-----KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~-----~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
..|.|.||...++.++++.+|...|.|..+.+++.-+ .....|||.|.+...+..|.. |.+..|-|+.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 3689999999999999999999999999999987211 235679999999999887775 7889998988888765
Q ss_pred ccchhhHH-HHHHHHHHHHHHhhcC------------------------C-------------CCceEEEecCCCCCCHH
Q psy12549 279 QKKAERTQ-ELKRRFEMLKIERLNR------------------------Y-------------QGVNLYVKNLDDSIDDE 320 (336)
Q Consensus 279 ~~~~~~~~-~~~~~~~~~~~~~~~~------------------------~-------------~~~~l~v~nlp~~~t~~ 320 (336)
........ ++..-..+...+.... | -..+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 44333222 1110000000000000 0 01468999999999999
Q ss_pred HHHHhcCCCCCeeec
Q psy12549 321 RLRKEFTPFGTITSA 335 (336)
Q Consensus 321 ~l~~~F~~~G~V~~v 335 (336)
++-+.|..+|+|.+.
T Consensus 167 e~~e~f~r~Gev~ya 181 (479)
T KOG4676|consen 167 ESGESFERKGEVSYA 181 (479)
T ss_pred hhhhhhhhcchhhhh
Confidence 999999999998753
No 156
>KOG0115|consensus
Probab=97.79 E-value=8.1e-05 Score=61.62 Aligned_cols=89 Identities=22% Similarity=0.376 Sum_probs=81.1
Q ss_pred hhHHHHHhhcCccccCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEE
Q psy12549 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYG 154 (336)
Q Consensus 75 ~~A~~A~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~a 154 (336)
.-|+.|-.+|++....|+.++|.++.. +.|+|.||+..++-+.+.+.|+.||++....++.|..+...+-+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg 75 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREG 75 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccc
Confidence 568888889999999999999999866 34999999999999999999999999999888888888888899
Q ss_pred EEEeCCHHHHHHHHHHhC
Q psy12549 155 FVHFETEEAANKSIEKVN 172 (336)
Q Consensus 155 fV~F~~~~~a~~a~~~l~ 172 (336)
+|.|...-.|.+|...+.
T Consensus 76 ~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhhcchhHHHHHHHhc
Confidence 999999999999999774
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.77 E-value=0.00013 Score=62.61 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=81.2
Q ss_pred eEEEcCCCCCCCHHHH------HHHhhccCCeeEEEEeeCCC-C-Cccc--EEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q psy12549 112 NVFIKNLDKSIDNKAM------YDTFSAFGSILSCKVAQDEQ-G-NSKG--YGFVHFETEEAANKSIEKVNGMLLNSKIV 181 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l------~~~f~~~G~v~~~~~~~~~~-~-~~~g--~afV~F~~~~~a~~a~~~l~~~~~~~~~i 181 (336)
-+||-+||+.+..+++ .++|.+||.|..+.+.+..+ . ...+ -.||+|.+.+||.+|+...+|..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 3889999988777663 47899999999887776541 1 1112 24999999999999999999999999999
Q ss_pred EEeeccCchhhhHhhhccccccceEEEcCCC---CCCcHHHHHHh
Q psy12549 182 FVGKFIPRKEREKELGEKAKLFTNVYIKNFG---EDFNDEKLKEM 223 (336)
Q Consensus 182 ~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp---~~~t~~~l~~~ 223 (336)
+..+...+.-...-.........++|+---. ...+.++|...
T Consensus 196 katYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 196 KATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred eeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 9988877665555555555555667664332 23566666443
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.67 E-value=9.5e-05 Score=54.22 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-----eeCCeEEEE
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM-----LLNSKIVFV 183 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~-----~~~~~~i~v 183 (336)
+-|.|.|++..++.++|++.|+.||.|..|.+.... .-|||.|.++++|+.|+..+... .+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 458899999999999999999999999988887643 36999999999999999876433 445555444
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.65 E-value=0.00012 Score=62.73 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=62.9
Q ss_pred ceEEEcCCCCCCcHHHH------HHhhccCCceeEEEEeCCC--Cccc-e--EEEEEeCCHHHHHHHHHHhCCceecCEE
Q psy12549 204 TNVYIKNFGEDFNDEKL------KEMFEPYGTITSYRVMNND--GKSR-G--FGFVAYESPEFAEKAVQAWNGKEVDGKI 272 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l------~~~f~~~g~i~~~~i~~~~--~~~~-g--~afV~F~~~~~a~~a~~~l~g~~~~g~~ 272 (336)
+-+||.+||..+..|++ .++|.+||.|..+.+-+.+ ..+. + -.||+|.+.++|.++|...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999988776663 4799999999998887622 1111 1 2499999999999999999999999999
Q ss_pred EEEeecccc
Q psy12549 273 LYVGRAQKK 281 (336)
Q Consensus 273 l~v~~~~~~ 281 (336)
|+..|..-+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999997654
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00013 Score=46.14 Aligned_cols=52 Identities=29% Similarity=0.470 Sum_probs=42.7
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHH
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAV 260 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~ 260 (336)
+.|.|.|.+.+..+ ++...|..||+|..+.+.. ...+++|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC----CCcEEEEEECCHHHHHhhC
Confidence 56889999877764 5666888999999988852 3678999999999999985
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.56 E-value=0.00043 Score=49.97 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=51.3
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEE-EeC--------CCCccceEEEEEeCCHHHHHHHHHHhCCceecCE-EE
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYR-VMN--------NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK-IL 273 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~-i~~--------~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~-~l 273 (336)
+.|.|-++|...+ ..+.+.|++||.|.+.. +.+ +.....++..|+|+++.+|.+|+.. ||..+.|. .+
T Consensus 7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 5688999998844 57889999999987664 100 1112366899999999999999985 99999885 45
Q ss_pred EEeecc
Q psy12549 274 YVGRAQ 279 (336)
Q Consensus 274 ~v~~~~ 279 (336)
-|.+..
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 566653
No 162
>KOG0115|consensus
Probab=97.47 E-value=0.00026 Score=58.65 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=76.8
Q ss_pred HHHHHHHHHhCCceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCC
Q psy12549 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDG 240 (336)
Q Consensus 162 ~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~ 240 (336)
.-|..|-..|++....++.+.|.++.. ..|+|.||+..++.+.+.+.|+.||+|....++. ..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~ 69 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG 69 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc
Confidence 346778888999999999999988653 3499999999999999999999999998766655 778
Q ss_pred ccceEEEEEeCCHHHHHHHHHHhCC
Q psy12549 241 KSRGFGFVAYESPEFAEKAVQAWNG 265 (336)
Q Consensus 241 ~~~g~afV~F~~~~~a~~a~~~l~g 265 (336)
+..+-++|.|.....|.+|+.....
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhcc
Confidence 8889999999999999999988743
No 163
>KOG2314|consensus
Probab=97.47 E-value=0.0006 Score=62.64 Aligned_cols=79 Identities=28% Similarity=0.400 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCCCC------HHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEE
Q psy12549 109 GVGNVFIKNLDKSID------NKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN-SKIV 181 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t------~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~-~~~i 181 (336)
....|+|.|+|---. ..-|..+|+++|++....++.++.|.++||.|++|.+..+|+.|++.|||..++ ++..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 346799999986321 234567899999999999998887779999999999999999999999999874 7777
Q ss_pred EEeecc
Q psy12549 182 FVGKFI 187 (336)
Q Consensus 182 ~v~~~~ 187 (336)
.+....
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 775543
No 164
>KOG1995|consensus
Probab=97.38 E-value=0.00015 Score=63.10 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeE--------EEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCE
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITS--------YRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~--------~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~ 271 (336)
...++||.+||..+++.+|.++|.++|.|.. +.+.+ .++..++-|.|.|.+...|+.|+.-++++.|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3468999999999999999999999998752 23333 6788899999999999999999999999999999
Q ss_pred EEEEeecccchh
Q psy12549 272 ILYVGRAQKKAE 283 (336)
Q Consensus 272 ~l~v~~~~~~~~ 283 (336)
.|.|.++..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999988876653
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.31 E-value=0.00069 Score=42.89 Aligned_cols=52 Identities=15% Similarity=0.447 Sum_probs=41.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSI 168 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~ 168 (336)
+.|-|.|.|++..+ .+...|..||+|..+.+.. .....||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 45888999886654 5566899999999987762 2448999999999999985
No 166
>KOG2202|consensus
Probab=97.20 E-value=0.00014 Score=60.44 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=52.8
Q ss_pred HHHHHhhc-cCCceeEEEEeCC-CCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 218 EKLKEMFE-PYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 218 ~~l~~~f~-~~g~i~~~~i~~~-~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
+++...++ +||+|+.+.+... ...-.|-+||.|...++|++|++.|||.++.|++|...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555665 8999999988762 2223677999999999999999999999999999999997654
No 167
>KOG2314|consensus
Probab=97.11 E-value=0.0013 Score=60.44 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCC--cH----HHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecC-EEEEE
Q psy12549 204 TNVYIKNFGEDF--ND----EKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG-KILYV 275 (336)
Q Consensus 204 ~~l~V~nlp~~~--t~----~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g-~~l~v 275 (336)
..|+|.|.|.-- .. .-|.++|+++|++..+.++. +.|...|+.|++|.+..+|+.|++.|||..++- ++..|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 568889988532 22 34578999999999998886 677789999999999999999999999999964 66666
Q ss_pred eec
Q psy12549 276 GRA 278 (336)
Q Consensus 276 ~~~ 278 (336)
..-
T Consensus 139 ~~f 141 (698)
T KOG2314|consen 139 RLF 141 (698)
T ss_pred ehh
Confidence 543
No 168
>KOG1995|consensus
Probab=97.05 E-value=0.00069 Score=59.05 Aligned_cols=82 Identities=26% Similarity=0.269 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL--------SCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
....+|||.+||.++++++|..+|.+.|.|. .+++.+++ ++..|+-|.|.|.++..|+.|+.-+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456899999999999999999999998765 36677776 78899999999999999999999999999999
Q ss_pred eEEEEeeccCc
Q psy12549 179 KIVFVGKFIPR 189 (336)
Q Consensus 179 ~~i~v~~~~~~ 189 (336)
..|.|..+...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 88888665443
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.96 E-value=0.005 Score=44.47 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=51.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEE-EeeC-------CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCK-VAQD-------EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV 181 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-~~~~-------~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i 181 (336)
.+-|.|-|.|+. ....|.+.|++||+|.+.. +.++ +.........|+|+++.+|.+|+. -||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356899999997 6678889999999988764 1111 101124578899999999999999 59999988655
Q ss_pred E-Eeec
Q psy12549 182 F-VGKF 186 (336)
Q Consensus 182 ~-v~~~ 186 (336)
- |.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 5554
No 170
>KOG3152|consensus
Probab=96.94 E-value=0.00093 Score=55.47 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=61.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-C--------CCccc----EEEEEeCCHHHHHHHHHHhCCce
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-Q--------GNSKG----YGFVHFETEEAANKSIEKVNGML 175 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~--------~~~~g----~afV~F~~~~~a~~a~~~l~~~~ 175 (336)
....||+++||+.++..-|+++|+.||.|-+|.+-+.. + |.+.+ -|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34679999999999999999999999999999887764 2 22222 37899999999999999999999
Q ss_pred eCCeE
Q psy12549 176 LNSKI 180 (336)
Q Consensus 176 ~~~~~ 180 (336)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.94 E-value=0.0038 Score=47.89 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=45.8
Q ss_pred HHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 218 EKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 218 ~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.+|.+.|..||++.-+++. .+.-+|+|.+-++|.+|+. ++|..+.|+.|+|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv------~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFV------GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEE------TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEe------CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 3678889999999888886 3458999999999999997 7999999999999886654
No 172
>KOG1996|consensus
Probab=96.90 E-value=0.0027 Score=53.73 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=51.5
Q ss_pred HHHHHHhhccCCceeEEEEeCCCCcc---ceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 217 DEKLKEMFEPYGTITSYRVMNNDGKS---RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 217 ~~~l~~~f~~~g~i~~~~i~~~~~~~---~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
++++++.+++||.|..|.|....+.. .--.||+|.+.++|.+|+-.|||+.|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 36788999999999998776522221 2347999999999999999999999999999887754
No 173
>KOG2202|consensus
Probab=96.89 E-value=0.00051 Score=57.13 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=54.8
Q ss_pred HHHHHHhh-ccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCch
Q psy12549 125 KAMYDTFS-AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 125 ~~l~~~f~-~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
++|...|+ +||+|+++.+..+-..+-.|-+||.|..+++|++|+..||+..+.|++|...+..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 34444455 8999999988777655678899999999999999999999999999999998765443
No 174
>KOG3152|consensus
Probab=96.85 E-value=0.00052 Score=56.93 Aligned_cols=69 Identities=22% Similarity=0.403 Sum_probs=59.2
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCC--C--------Cccc----eEEEEEeCCHHHHHHHHHHhCCceec
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--D--------GKSR----GFGFVAYESPEFAEKAVQAWNGKEVD 269 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~--~--------~~~~----g~afV~F~~~~~a~~a~~~l~g~~~~ 269 (336)
..||++++|+.....-|+++|+.||.|-+|.+.+. + |.++ ..|+|+|.+-..|.+....|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999998772 2 2222 34789999999999999999999999
Q ss_pred CEE
Q psy12549 270 GKI 272 (336)
Q Consensus 270 g~~ 272 (336)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 843
No 175
>KOG1855|consensus
Probab=96.82 E-value=0.0023 Score=57.05 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeC---C-C--CC--------cccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD---E-Q--GN--------SKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~-~--~~--------~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
...++|.+-|||.+-.-+-|.++|..+|.|..|+|+.. + + +. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999999999999999999999999887 3 1 11 245899999999999999997765
Q ss_pred cee
Q psy12549 174 MLL 176 (336)
Q Consensus 174 ~~~ 176 (336)
..-
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 443
No 176
>KOG1996|consensus
Probab=96.62 E-value=0.008 Score=50.99 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=54.4
Q ss_pred HHHHHHHhhccCCeeEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 124 NKAMYDTFSAFGSILSCKVAQDEQG--NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 124 ~~~l~~~f~~~G~v~~~~~~~~~~~--~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
++++++.+++||.|..|.|.-.+.. ...---||+|...++|.+|+-.|||.+++|+.+...+.+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 3578899999999999988887632 22235899999999999999999999999999988775543
No 177
>KOG4849|consensus
Probab=96.58 E-value=0.0019 Score=55.93 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=63.3
Q ss_pred CceeeeecCchhhhhhhHHhhh-ccc--CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 18 KHNVATRELSAKVVEGVSRSLS-SLI--DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 18 ~~~v~v~~lp~~~~e~~l~~~f-~~~--~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
+.++|||||-+.+|.+||.+.. +.+ ...++++..++ .-|+|+|||.|...+. ....+.++.|....++|+.-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---~NGQSKG~AL~~~~Sd--Aa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---TNGQSKGYALLVLNSD--AAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---cCCcccceEEEEecch--HHHHHHHHhcccceecCCCC
Confidence 3479999999999999998866 333 44577888777 4599999999999999 88899999999999999876
Q ss_pred EEEec
Q psy12549 95 RIMWS 99 (336)
Q Consensus 95 ~v~~~ 99 (336)
.|...
T Consensus 155 ~V~~~ 159 (498)
T KOG4849|consen 155 TVLSY 159 (498)
T ss_pred eeecc
Confidence 66543
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.55 E-value=0.012 Score=45.30 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=50.5
Q ss_pred cccCceeeeecCch-----hhhh----hhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhc
Q psy12549 15 IIPKHNVATRELSA-----KVVE----GVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTM 84 (336)
Q Consensus 15 ~~p~~~v~v~~lp~-----~~~e----~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~ 84 (336)
..|+.+|.|.-+.+ ..-. .+|.+.| .+|.+.-+++..+. -+|+|.+- +.|.+|++ +
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~-----------mwVTF~dg--~sALaals-~ 89 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT-----------MWVTFRDG--QSALAALS-L 89 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC-----------EEEEESSC--HHHHHHHH-G
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe-----------EEEEECcc--HHHHHHHc-c
Confidence 45677777766651 1222 2444556 77788888888765 79999999 99999999 9
Q ss_pred CccccCCeeeEEEeccC
Q psy12549 85 NFDALKGRPIRIMWSQR 101 (336)
Q Consensus 85 ~~~~~~g~~i~v~~~~~ 101 (336)
+|..+.|+.++|+.-.+
T Consensus 90 dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 90 DGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CCSEETTEEEEEEE---
T ss_pred CCcEECCEEEEEEeCCc
Confidence 99999999999987544
No 179
>KOG4849|consensus
Probab=96.54 E-value=0.0028 Score=54.95 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=66.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGS--ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..+||+||-..+|.+||.+.+.+.|. +.++++.-++ .|.+||||+|...+.....+.++.|-...+.|+.-.|...+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 36999999999999999999988873 5667777776 78999999999999999999999999999998777665444
No 180
>KOG1855|consensus
Probab=96.52 E-value=0.0039 Score=55.61 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=55.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCC-----C--Cc--------cceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-----D--GK--------SRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~-----~--~~--------~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.+ + +. .+-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4588999999999888999999999999999999874 1 11 1457999999999999999987654
Q ss_pred ee
Q psy12549 267 EV 268 (336)
Q Consensus 267 ~~ 268 (336)
.-
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 43
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.96 E-value=0.053 Score=35.25 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAF----GSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
..|+|+|+.. ++.++|+.+|..| + ...+.++-|. -|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 5699999955 8999999999999 4 4567777763 3779999999999999864
No 182
>KOG2591|consensus
Probab=95.95 E-value=0.014 Score=53.91 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=62.3
Q ss_pred eeccCCCC-ccccCc--e-eeeecCchhhhhhhHHhhhcc---cCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHH
Q psy12549 6 TVQLSEEG-IIIPKH--N-VATRELSAKVVEGVSRSLSSL---IDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTE 78 (336)
Q Consensus 6 ~~~~~~~~-~~~p~~--~-v~v~~lp~~~~e~~l~~~f~~---~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~ 78 (336)
.|++++.| .++|.+ + |+++.||.+.-+++|+-+|+. -.+.++.+-.+.+ .||+|++. .||+
T Consensus 159 ~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----------WyITfesd--~DAQ 226 (684)
T KOG2591|consen 159 NVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----------WYITFESD--TDAQ 226 (684)
T ss_pred CceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----------eEEEeecc--hhHH
Confidence 45566555 455554 4 455999999999999999943 5667888777665 89999999 9999
Q ss_pred HHHhhcCc--cccCCeeeEEEe
Q psy12549 79 RALDTMNF--DALKGRPIRIMW 98 (336)
Q Consensus 79 ~A~~~~~~--~~~~g~~i~v~~ 98 (336)
.|.+.|.. ..|.|++|.-+.
T Consensus 227 qAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 227 QAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred HHHHHHHHHHHhhcCcchhhhh
Confidence 99997766 478888876654
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.72 E-value=0.062 Score=36.94 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=41.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
.||--..|..+...||.++|+.||.|. |..+.+ .-|||...+.+.|..++..++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 455445999999999999999999876 555544 3699999999999999998753
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.68 E-value=0.017 Score=46.66 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=45.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEeeCC--C-CCcccEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSA-FGSI---LSCKVAQDE--Q-GNSKGYGFVHFETEEAANKSIEKVNGMLL 176 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v---~~~~~~~~~--~-~~~~g~afV~F~~~~~a~~a~~~l~~~~~ 176 (336)
...+|.|++||+++|++++.+.++. ++.- ..+.-..+. . ...-.-|||.|.+.+++......++|+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 3468999999999999999997777 6654 233311221 1 12234699999999999999999999776
No 185
>KOG2416|consensus
Probab=95.61 E-value=0.011 Score=54.97 Aligned_cols=77 Identities=8% Similarity=-0.028 Sum_probs=60.1
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhc--ccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc--
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSS--LIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL-- 89 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~--~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~-- 89 (336)
.-.++..|+|.||-...|..+|+.+.. .+.|++.+|.+-+ .+|||.|.+. ++|.....+|+|..|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK---------ShCyV~yss~--eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK---------SHCYVSYSSV--EEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh---------cceeEecccH--HHHHHHHHHHhccccCC
Confidence 446778899999999999999999983 4456677555533 5599999999 999999999999877
Q ss_pred -CCeeeEEEeccC
Q psy12549 90 -KGRPIRIMWSQR 101 (336)
Q Consensus 90 -~g~~i~v~~~~~ 101 (336)
+++.|.+.+...
T Consensus 509 sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 509 SNPKHLIADFVRA 521 (718)
T ss_pred CCCceeEeeecch
Confidence 456666655433
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.50 E-value=0.058 Score=43.61 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=52.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhcc-CCce---eEEE--EeC-CC-CccceEEEEEeCCHHHHHHHHHHhCCceecC-----
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEP-YGTI---TSYR--VMN-ND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG----- 270 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~-~g~i---~~~~--i~~-~~-~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g----- 270 (336)
..|.|++||+.+|++++.+.++. ++.- ..+. ... .. ......|||.|.+.+++..-...++|..|.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 57999999999999999998886 6665 2332 111 11 1124569999999999999999999998843
Q ss_pred EEEEEeeccc
Q psy12549 271 KILYVGRAQK 280 (336)
Q Consensus 271 ~~l~v~~~~~ 280 (336)
.+..|++|.-
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 5677788765
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.47 E-value=0.093 Score=36.08 Aligned_cols=56 Identities=20% Similarity=0.418 Sum_probs=40.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCC
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g 265 (336)
..||--.+|..+...||.++|++||.|. |..+. -..|||...+.+.|..|+..+.-
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~-----dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIN-----DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEEC-----TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEc-----CCcEEEEeecHHHHHHHHHHhcc
Confidence 3466556999999999999999999873 33332 34599999999999999988753
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.41 E-value=0.049 Score=41.39 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=56.0
Q ss_pred cccceEEEcCCCCCC----cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 201 KLFTNVYIKNFGEDF----NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~----t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
.+..+|.|+=|.... +...+...++.||+|.++-..- +..|.|.|.+..+|-+|+.+++. ...|..+.+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 344678886555543 3344566778999999998762 55699999999999999999876 6678888888
Q ss_pred eccc
Q psy12549 277 RAQK 280 (336)
Q Consensus 277 ~~~~ 280 (336)
|...
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 8653
No 189
>KOG2416|consensus
Probab=95.40 E-value=0.012 Score=54.76 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=62.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhc-cCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCcee---cCEEEEEee
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFE-PYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEV---DGKILYVGR 277 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~-~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~---~g~~l~v~~ 277 (336)
..+.|+|.||-..+|.-+|+.++. ..|.|... ++. +-+..|||.|.+.++|.....+|||..| +++.|.+.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 347899999999999999999998 66666655 222 1256699999999999999999999998 568999999
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
.....
T Consensus 519 ~~~de 523 (718)
T KOG2416|consen 519 VRADE 523 (718)
T ss_pred cchhH
Confidence 86543
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.38 E-value=0.052 Score=35.29 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=42.6
Q ss_pred eeeeecCchhhhhhhHHhhhccc----CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhc
Q psy12549 20 NVATRELSAKVVEGVSRSLSSLI----DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTM 84 (336)
Q Consensus 20 ~v~v~~lp~~~~e~~l~~~f~~~----~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~ 84 (336)
.|.|+++. +++.+++..+|..+ .+..|..+.|.. |=|.|.+. +.|.+|+..|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS----------cNvvf~d~--~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS----------CNVVFKDE--ETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc----------EEEEECCH--HHHHHHHHcC
Confidence 48999985 58889999999555 667888887764 89999999 9999999754
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.23 E-value=0.19 Score=37.06 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=49.8
Q ss_pred EEEcCCCCCCcHHHHHHhhccCC-ceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 206 VYIKNFGEDFNDEKLKEMFEPYG-TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 206 l~V~nlp~~~t~~~l~~~f~~~g-~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
+.+...|..++.++|..+.+.+- .|..+++++....++-.+.+.|.+.++|+.-...+||+.|..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444556666677776666654 466788887655678889999999999999999999999864
No 192
>KOG2591|consensus
Probab=94.95 E-value=0.08 Score=49.12 Aligned_cols=95 Identities=11% Similarity=0.197 Sum_probs=69.1
Q ss_pred hhHHHHHhhcCccccCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEeeCCCCCccc
Q psy12549 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA--FGSILSCKVAQDEQGNSKG 152 (336)
Q Consensus 75 ~~A~~A~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~--~G~v~~~~~~~~~~~~~~g 152 (336)
+--.++++...+..+..+-.+|++... .|-|+++-||..+..++++.+|.. +-.+.+|.+-.+.
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~k--------RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------ 213 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHK--------RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------ 213 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcc--------eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------
Confidence 445567777777777666666655422 256889999999999999999975 5567778776542
Q ss_pred EEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q psy12549 153 YGFVHFETEEAANKSIEKVNG--MLLNSKIVFV 183 (336)
Q Consensus 153 ~afV~F~~~~~a~~a~~~l~~--~~~~~~~i~v 183 (336)
-.||+|++..||+.|.+.|.- ..|.|++|..
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 489999999999999987643 3466665543
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.86 E-value=0.11 Score=39.51 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=53.2
Q ss_pred CceEEEcCCCCCC----CHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 110 VGNVFIKNLDKSI----DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 110 ~~~l~v~nlp~~~----t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
-.+|.|+=|..++ +...+...++.||+|.+|.+.- +.-|.|.|.+..+|-+|+.++.. ...|..+.+.|
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3578887666555 3344556678899999998763 34699999999999999998766 55677777766
Q ss_pred cc
Q psy12549 186 FI 187 (336)
Q Consensus 186 ~~ 187 (336)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 43
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.74 E-value=0.049 Score=38.20 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=45.9
Q ss_pred EEEEeCCcchhhHHHHHhhcCc-cccCCeeeEEEeccCCCC-------cCCCCCceEEEcCCCCCCCHHHHHHHh
Q psy12549 65 ILVQLGQPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPS-------LRKSGVGNVFIKNLDKSIDNKAMYDTF 131 (336)
Q Consensus 65 afV~f~~~~~~~A~~A~~~~~~-~~~~g~~i~v~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~f 131 (336)
|.|+|..+ .-|+.-++.... ..+.+..+.|...+.... ......++|.|.|||...++++|++.+
T Consensus 1 AlITF~e~--~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEE--GVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcH--HHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999 999998884443 355666666654322211 233456899999999999999998754
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.66 E-value=0.1 Score=42.34 Aligned_cols=63 Identities=30% Similarity=0.361 Sum_probs=46.7
Q ss_pred cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhC--CceecCEEEEEeecccch
Q psy12549 216 NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN--GKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 216 t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~--g~~~~g~~l~v~~~~~~~ 282 (336)
..+.|+++|..++.+..+..++. =+-..|.|.+.++|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34789999999999988888764 2338899999999999999999 999999999999985443
No 196
>KOG0804|consensus
Probab=94.09 E-value=0.085 Score=47.75 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=58.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCC-ceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYG-TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g-~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
.+.|+|-.+|..++..||..+...+- .|.++++++..-.++-.+.|.|.+.++|..-...+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 47799999999999999999997664 478999998544557779999999999999999999999864
No 197
>KOG2068|consensus
Probab=94.04 E-value=0.043 Score=47.82 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=60.2
Q ss_pred eEEEcCCCCCCCHHHH---HHHhhccCCeeEEEEeeCCC---C-CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 112 NVFIKNLDKSIDNKAM---YDTFSAFGSILSCKVAQDEQ---G-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l---~~~f~~~G~v~~~~~~~~~~---~-~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
-+|+-+|+.....+++ .+.|.+||.+..+.+..+++ + ....-+||+|...++|..|+...+|...+|+.+...
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 4778888876655444 35688899999988888652 1 112249999999999999999999999999997776
Q ss_pred eccCchh
Q psy12549 185 KFIPRKE 191 (336)
Q Consensus 185 ~~~~~~~ 191 (336)
+..++..
T Consensus 159 ~gttkyc 165 (327)
T KOG2068|consen 159 LGTTKYC 165 (327)
T ss_pred hCCCcch
Confidence 6555543
No 198
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.95 E-value=0.32 Score=35.88 Aligned_cols=69 Identities=6% Similarity=0.069 Sum_probs=47.7
Q ss_pred ccCceeeeecCchhhhh-hhHHhhhccc--CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC
Q psy12549 16 IPKHNVATRELSAKVVE-GVSRSLSSLI--DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG 91 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e-~~l~~~f~~~--~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g 91 (336)
....++.+--.|+.++- ++|..+.+.. .+..++++++. ..++.-+.+.|++. ++|.......||..+..
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-----~pnrymVLikF~~~--~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-----TPNRYMVLIKFRDQ--ESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-----CCceEEEEEEECCH--HHHHHHHHHhCCCccCC
Confidence 33445555455555555 5555444333 55578888876 24777799999999 99999999999988864
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.51 E-value=0.64 Score=30.73 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=44.8
Q ss_pred CCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 121 SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 121 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
.++-++++..+..|+.. ++..+++| =||.|.+..+|++|....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57889999999999743 35566555 689999999999999999998887776654
No 200
>KOG4285|consensus
Probab=93.29 E-value=0.29 Score=42.08 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=55.1
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCE-EEEEeecccch
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK-ILYVGRAQKKA 282 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~-~l~v~~~~~~~ 282 (336)
.-|.|-++|..-. .-|...|++||.|...... .+..|-+|+|.+.-+|.+||.. +|..|+|. .|-|.....+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~----~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP----SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC----CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 5678888887644 3677899999998655332 4466899999999999999986 99999874 45566655543
No 201
>KOG0804|consensus
Probab=93.07 E-value=0.85 Score=41.57 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=58.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
.+.|+|-.+|..++..||-.+...+- .|..++++++..+ .+--+++.|.+.++|......+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999988765 5888999997543 45468999999999999999999987643
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.76 E-value=0.16 Score=35.62 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=44.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEeeccCchhhhHhhh-ccccccceEEEcCCCCCCcHHHHHHhhc
Q psy12549 154 GFVHFETEEAANKSIEKVNGM--LLNSKIVFVGKFIPRKEREKELG-EKAKLFTNVYIKNFGEDFNDEKLKEMFE 225 (336)
Q Consensus 154 afV~F~~~~~a~~a~~~l~~~--~~~~~~i~v~~~~~~~~~~~~~~-~~~~~~~~l~V~nlp~~~t~~~l~~~f~ 225 (336)
|+|+|.++.-|++.++. ..+ .+.+..+.|....-......... ......++|.|.|||....+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999883 333 35666665533221111111111 1122337899999999999999987654
No 203
>KOG2068|consensus
Probab=92.59 E-value=0.047 Score=47.61 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=59.5
Q ss_pred ceEEEcCCCCCCcHHHHH---HhhccCCceeEEEEeCCC-----CccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEE
Q psy12549 204 TNVYIKNFGEDFNDEKLK---EMFEPYGTITSYRVMNND-----GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~---~~f~~~g~i~~~~i~~~~-----~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v 275 (336)
+-+||.+|+.....+.+. +.|.+||.|..+.+.... ....--++|+|...++|..||...+|....|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888776555543 578889999888776622 111223899999999999999999999999999888
Q ss_pred eecccch
Q psy12549 276 GRAQKKA 282 (336)
Q Consensus 276 ~~~~~~~ 282 (336)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7766553
No 204
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=91.30 E-value=0.24 Score=38.91 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=78.6
Q ss_pred CCCHHHHHHHhhc-cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhHhhhcc
Q psy12549 121 SIDNKAMYDTFSA-FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEK 199 (336)
Q Consensus 121 ~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~ 199 (336)
..+-..|.+.+.. ++....+.+..- ..++..++|.+.+++.+++. .....+.+..+.+....+.........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~-- 100 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKF-- 100 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccce--
Confidence 3556666666544 333223333332 23589999999999999998 466778888888877765433221111
Q ss_pred ccccceEEEcCCCCC-CcHHHHHHhhccCCceeEEEEeCCCCccceEEEE
Q psy12549 200 AKLFTNVYIKNFGED-FNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFV 248 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~-~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV 248 (336)
.....-|.|.|||.. .+++-++.+.+.+|.+..++..........||-|
T Consensus 101 ~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 101 EHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred eccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEE
Confidence 111245788999976 7888899999999999888876543333445544
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.04 E-value=0.85 Score=37.08 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=45.7
Q ss_pred CHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEeeccC
Q psy12549 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN--GMLLNSKIVFVGKFIP 188 (336)
Q Consensus 123 t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~--~~~~~~~~i~v~~~~~ 188 (336)
..+.|+++|..++.+......+. -+-..|.|.+.++|..|...|+ +..+.|..+.+-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888877764 3468999999999999999999 8999999999977643
No 206
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.86 E-value=10 Score=32.91 Aligned_cols=158 Identities=13% Similarity=0.226 Sum_probs=96.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--------CCCcccEEEEEeCCHHHHHHHHHH----hCC--
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE--------QGNSKGYGFVHFETEEAANKSIEK----VNG-- 173 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~--------~~~~~g~afV~F~~~~~a~~a~~~----l~~-- 173 (336)
...+.|.+.|+..+++-..+...|-+||+|+++.++.+. .........+.|-+.+.+-..... |.-
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999875 223345788999998887654432 221
Q ss_pred ceeCCeEEEEeeccC-----ch--h--hh------Hhhh---ccccccceEEEcCCCCCCcHHHH-HH---hhccCC---
Q psy12549 174 MLLNSKIVFVGKFIP-----RK--E--RE------KELG---EKAKLFTNVYIKNFGEDFNDEKL-KE---MFEPYG--- 228 (336)
Q Consensus 174 ~~~~~~~i~v~~~~~-----~~--~--~~------~~~~---~~~~~~~~l~V~nlp~~~t~~~l-~~---~f~~~g--- 228 (336)
..+....+.+.+..- .. . .. +... ......+.|.|. +...+..+++ .+ +...-+
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCce
Confidence 224444554443221 10 0 00 0000 011223556664 2334433332 22 222222
Q ss_pred -ceeEEEEeC----CCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 229 -TITSYRVMN----NDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 229 -~i~~~~i~~----~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
-++++.++. ...-+..||.++|-+...|...+..+...
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 366788887 23335789999999999999988877633
No 207
>KOG2135|consensus
Probab=88.77 E-value=0.28 Score=44.77 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=57.7
Q ss_pred EEEcCCCCCC-CHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCch
Q psy12549 113 VFIKNLDKSI-DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 113 l~v~nlp~~~-t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
|-+.-.|... +..+|...|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..+.++.|++.|.++..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 4444445543 66789999999999999887654 2369999999999977777 58999999999999988764
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.27 E-value=1.9 Score=29.21 Aligned_cols=59 Identities=29% Similarity=0.436 Sum_probs=35.2
Q ss_pred CCCcHHHHHHhhccCC-----ceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 213 EDFNDEKLKEMFEPYG-----TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 213 ~~~t~~~l~~~f~~~g-----~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
..++..+|..++..-+ .|-.+++. ..|+||+-.. +.|..++..|++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3466777777776554 35577775 5679998875 5789999999999999999999864
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.92 E-value=3.2 Score=28.11 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHhhccCC-----eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 119 DKSIDNKAMYDTFSAFGS-----ILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 119 p~~~t~~~l~~~f~~~G~-----v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
-..++..+|..++..-+. |-.+.+..+ |+||+-+.. .|..+++.|++..+.|+++.++.+
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 356788899999887653 556777654 899988766 788899999999999999998753
No 210
>KOG2135|consensus
Probab=85.82 E-value=0.49 Score=43.26 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=55.3
Q ss_pred EEEcCCCCCC-cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 206 VYIKNFGEDF-NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 206 l~V~nlp~~~-t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
+-+.-.|... +-++|-..|.+||.|..|.+-.. .-.|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 4444444443 55789999999999999988643 3348999999999977876 589999999999998765
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.27 E-value=7.9 Score=25.59 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=43.8
Q ss_pred CCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEE
Q psy12549 213 EDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275 (336)
Q Consensus 213 ~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v 275 (336)
..++.++++..+..|+-. ++..- .+| -||.|.+..+|+++....+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I~~d-----~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RIRDD-----RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eEEec-----CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 356778999999999743 33321 144 589999999999999999999999888765
No 212
>KOG4574|consensus
Probab=84.35 E-value=0.6 Score=45.83 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=60.7
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCcee--cCEEEEEeecccch
Q psy12549 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEV--DGKILYVGRAQKKA 282 (336)
Q Consensus 205 ~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~--~g~~l~v~~~~~~~ 282 (336)
+..+.|.+-..+-..|..+|+.||.+.+....++ -..|.|.|.+.+.|..|+++++|+.. -|-+.+|.+++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3455666667777889999999999998887764 44599999999999999999999986 57788998886544
No 213
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.81 E-value=1.5 Score=34.36 Aligned_cols=80 Identities=15% Similarity=0.015 Sum_probs=57.6
Q ss_pred eEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEeccCCCCcCCCC----CceEEEcCCCCC-CCHHHHHHHhhccCCe
Q psy12549 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSG----VGNVFIKNLDKS-IDNKAMYDTFSAFGSI 137 (336)
Q Consensus 63 g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~~~~~~~~~~~~----~~~l~v~nlp~~-~t~~~l~~~f~~~G~v 137 (336)
++..++|.++ +++.++++ ...-.+.|..+.+..-.+........ ..=|.|.|||.. .+++-+..+-+.+|.+
T Consensus 56 ~~fl~~F~~~--~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 56 NLFLFQFESE--EDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred CeEEEEEEec--cceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 5689999999 99998888 55566778777776544332222111 223778899987 6778899999999998
Q ss_pred eEEEEeeC
Q psy12549 138 LSCKVAQD 145 (336)
Q Consensus 138 ~~~~~~~~ 145 (336)
..+.....
T Consensus 133 i~vD~~t~ 140 (153)
T PF14111_consen 133 IEVDENTL 140 (153)
T ss_pred EEEEcCCC
Confidence 88775543
No 214
>KOG2253|consensus
Probab=79.74 E-value=1.8 Score=41.43 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
...++||+|+...+..+-++.+....|.|..++... |+|+.|....-+..|+..++...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 346899999999999999999999999888766443 899999999999999999998889888877644
No 215
>KOG4285|consensus
Probab=79.45 E-value=5.9 Score=34.38 Aligned_cols=73 Identities=12% Similarity=-0.020 Sum_probs=51.7
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCee
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRP 93 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~ 93 (336)
....+.=|.|-+.|+.-+.=.|+.|-.+|.+..+....+. -+-+|.|.+. -+|.+||. .||..|.|..
T Consensus 193 ~d~~D~WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~~~ng---------NwMhirYssr--~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 193 ADAADTWVTVFGFPPGQVSIVLNLFSRCGEVVKHVTPSNG---------NWMHIRYSSR--THAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cccccceEEEeccCccchhHHHHHHHhhCeeeeeecCCCC---------ceEEEEecch--hHHHHhhh-hcCeeeccce
Confidence 3344566888888887776666654488887766555322 3479999999 99999999 8999888643
Q ss_pred -eEEEe
Q psy12549 94 -IRIMW 98 (336)
Q Consensus 94 -i~v~~ 98 (336)
|-|..
T Consensus 261 miGVkp 266 (350)
T KOG4285|consen 261 MIGVKP 266 (350)
T ss_pred EEeeee
Confidence 44554
No 216
>KOG2253|consensus
Probab=77.71 E-value=1.1 Score=42.75 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=59.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
+..++||+|+...+..+-++.....+|-|-++.... |+|..|..+..+.+|+..++-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 346899999999999999999999999987776642 899999999999999999998889887776644
No 217
>KOG4574|consensus
Probab=77.64 E-value=1.7 Score=42.86 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=57.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEeeccC
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIP 188 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~--~~~~i~v~~~~~ 188 (336)
..+.|.+-+.+..-|..+|+.||.|.+.+..++- ..|.|.|.+.+.|..|+.+++|+.+ -|-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3444555667888899999999999999988764 3599999999999999999999875 577777766653
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=75.86 E-value=12 Score=26.06 Aligned_cols=57 Identities=11% Similarity=0.189 Sum_probs=42.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
-|.--.+..++..+|++.++. || .|..|.....+.+. .-|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 555566788999999999988 55 57777776665442 25999999998888765543
No 219
>KOG4483|consensus
Probab=72.80 E-value=14 Score=33.44 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=45.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGS-ILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~ 169 (336)
...|-|.++|.....+||...|+.|++ --.|+++.+ ..||-.|.+...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh
Confidence 456889999999999999999999985 344666654 379999999999999998
No 220
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.36 E-value=18 Score=24.76 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=41.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
-|+-.++..++..+|++.++. || .|..+....-+.+. .-|||.+...++|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHhh
Confidence 566667889999999999988 45 46666666555432 25999999888887755443
No 221
>KOG2318|consensus
Probab=70.82 E-value=19 Score=34.35 Aligned_cols=78 Identities=27% Similarity=0.386 Sum_probs=59.8
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEeeCCC-----------CC-------------c--------
Q psy12549 108 SGVGNVFIKNLDKS-IDNKAMYDTFSAF----GSILSCKVAQDEQ-----------GN-------------S-------- 150 (336)
Q Consensus 108 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~~~~~~~~~-----------~~-------------~-------- 150 (336)
..+++|-|-|+... +..++|.-+|++| |.|.+|.|+++.- |+ +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44568889999874 7888999998877 5799999887643 22 0
Q ss_pred ----------------ccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEee
Q psy12549 151 ----------------KGYGFVHFETEEAANKSIEKVNGMLLNS--KIVFVGK 185 (336)
Q Consensus 151 ----------------~g~afV~F~~~~~a~~a~~~l~~~~~~~--~~i~v~~ 185 (336)
--||.|.|.+.+.|......|+|..+.. ..+.+.+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1379999999999999999999999864 4444443
No 222
>KOG4410|consensus
Probab=64.44 E-value=20 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=35.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCH
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETE 161 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~ 161 (336)
+-|+++|||.++.-.||+..+.+.|.+- ..+.+ .| +.|-||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw--kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW--KG-HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEee--ec-CCcceeEecCCc
Confidence 4699999999999999999999887433 22222 23 456799999764
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.18 E-value=7.7 Score=28.93 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=28.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHH
Q psy12549 112 NVFIKNLDKS---------IDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEA 163 (336)
Q Consensus 112 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~ 163 (336)
++.|-|+|.. ++.++|.+.|+.|.++. ++.+.++.| +.|++.|.|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCChH
Confidence 3666666543 45679999999999875 555666554 67899999987544
No 224
>KOG4410|consensus
Probab=62.52 E-value=9 Score=32.94 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=34.9
Q ss_pred CceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCc
Q psy12549 18 KHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQP 72 (336)
Q Consensus 18 ~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~ 72 (336)
.+-|+++|||.++--.||.+-....+-+-..+.+.. .+|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec-------CCcceeEecCCc
Confidence 455999999999999999987644444444455433 456799999876
No 225
>KOG4483|consensus
Probab=60.91 E-value=15 Score=33.32 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=50.2
Q ss_pred cccceeccCCCCccccCceeeeecCchhhhhhhHHhhhcccCCc--eEEEeCCCCcccccCCceEEEEEeCCcchhhHHH
Q psy12549 2 YTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGN--TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTER 79 (336)
Q Consensus 2 ~~~~~~~~~~~~~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~--~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~ 79 (336)
||+..+...++.+..|+- |-|-+.|.....+||...|..+... .|+.+-+. +||-.|.+. ..|..
T Consensus 376 ~~s~~p~~ll~e~dlpHV-lEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~--~~Aae 442 (528)
T KOG4483|consen 376 SMSKAPPPLLRESDLPHV-LEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSV--NRAAE 442 (528)
T ss_pred ccccCCCCCCCcccccce-eEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecch--HHHHH
Confidence 566777777788876654 8899999887777777778555333 44444433 399999999 99999
Q ss_pred HHh
Q psy12549 80 ALD 82 (336)
Q Consensus 80 A~~ 82 (336)
|+.
T Consensus 443 aLt 445 (528)
T KOG4483|consen 443 ALT 445 (528)
T ss_pred Hhh
Confidence 988
No 226
>KOG2891|consensus
Probab=59.48 E-value=18 Score=31.00 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=50.9
Q ss_pred ceEEEcCCCCC------------CcHHHHHHhhccCCceeEEEEeC-------CCCccc-----eE---------EEEEe
Q psy12549 204 TNVYIKNFGED------------FNDEKLKEMFEPYGTITSYRVMN-------NDGKSR-----GF---------GFVAY 250 (336)
Q Consensus 204 ~~l~V~nlp~~------------~t~~~l~~~f~~~g~i~~~~i~~-------~~~~~~-----g~---------afV~F 250 (336)
.+|++.++|-. .+++-|+..|+.||.|..+.|+. .+|+.. || |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 67888888853 35678999999999999988764 234332 22 34555
Q ss_pred CCHHHHHHHHHHhCCcee----cC----EEEEEeecccc
Q psy12549 251 ESPEFAEKAVQAWNGKEV----DG----KILYVGRAQKK 281 (336)
Q Consensus 251 ~~~~~a~~a~~~l~g~~~----~g----~~l~v~~~~~~ 281 (336)
...---..|+..|.|..+ +| -.+.|.|..++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 555555667777777654 22 34666665444
No 227
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.47 E-value=22 Score=23.08 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=16.3
Q ss_pred HHHHHhhccCCceeEEEEeC
Q psy12549 218 EKLKEMFEPYGTITSYRVMN 237 (336)
Q Consensus 218 ~~l~~~f~~~g~i~~~~i~~ 237 (336)
++|+++|+..|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999987666544
No 228
>KOG2318|consensus
Probab=56.96 E-value=48 Score=31.80 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=59.7
Q ss_pred ccceEEEcCCCCC-CcHHHHHHhhccC----CceeEEEEeC-C-----------CCc-----------------------
Q psy12549 202 LFTNVYIKNFGED-FNDEKLKEMFEPY----GTITSYRVMN-N-----------DGK----------------------- 241 (336)
Q Consensus 202 ~~~~l~V~nlp~~-~t~~~l~~~f~~~----g~i~~~~i~~-~-----------~~~----------------------- 241 (336)
..+.|-|.|+.++ +...+|.-+|+.| |.|.+|.|.+ . .|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3477999999876 7888998888765 5788888876 1 111
Q ss_pred --------------cceEEEEEeCCHHHHHHHHHHhCCceec--CEEEEEeecc
Q psy12549 242 --------------SRGFGFVAYESPEFAEKAVQAWNGKEVD--GKILYVGRAQ 279 (336)
Q Consensus 242 --------------~~g~afV~F~~~~~a~~a~~~l~g~~~~--g~~l~v~~~~ 279 (336)
.--||.|+|.+.+.|.......+|..|. |..+-++|..
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 0137899999999999999999999996 4666666654
No 229
>KOG1295|consensus
Probab=56.13 E-value=8.9 Score=34.50 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=45.3
Q ss_pred ceeeeecCchhhhhhhHHhhhccc--CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 19 HNVATRELSAKVVEGVSRSLSSLI--DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f~~~--~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
-.|.|.+||+..++.++.+...-. .+....+... .......-.+.|||.|..+ ++........+|..|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a-~~s~~~~~ysrayinFk~~--~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKA-DESLRNHKYSRAYINFKNP--EDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccc-cccchhhhhhhhhhccccH--HHHHHHHhhCCceEE
Confidence 458899999999999998766222 1222222211 1112233467799999999 998888887777655
No 230
>KOG4350|consensus
Probab=53.46 E-value=12 Score=34.00 Aligned_cols=63 Identities=63% Similarity=1.090 Sum_probs=55.3
Q ss_pred CCccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcch
Q psy12549 12 EGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74 (336)
Q Consensus 12 ~~~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~ 74 (336)
.+.+.|.+||..-.-...++|+.-|.-=..+++....+.+|.+++|..-+.|--.|+...+||
T Consensus 425 ~~~ivP~~NvaTie~~A~V~eGVSR~RNALiNGD~~~YDWDsGYTCHQlGSG~IvvqLaQPY~ 487 (620)
T KOG4350|consen 425 HKVIVPHRNVATIENHARVVEGVSRCRNALINGDSSSYDWDSGYTCHQLGSGLIVVQLAQPYI 487 (620)
T ss_pred ceeeccccchhhhhhhhHhhhhhhhhhhhhccCCcccccCcCCcchhhcCCceEEEEecCcee
Confidence 678899999998888889999998876688899999999999999999999988888887744
No 231
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=51.09 E-value=26 Score=30.51 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=57.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCC---------CccceEEEEEeCCHHHHHH----HHHHhC--Cc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND---------GKSRGFGFVAYESPEFAEK----AVQAWN--GK 266 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~---------~~~~g~afV~F~~~~~a~~----a~~~l~--g~ 266 (336)
..+.|...|+..+++--.+...|-+||+|+++.++... .+......+-|-+.+.+-. .++.|. ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 34779999999999999999999999999999999733 2234567889988776532 223332 23
Q ss_pred eecCEEEEEeeccc
Q psy12549 267 EVDGKILYVGRAQK 280 (336)
Q Consensus 267 ~~~g~~l~v~~~~~ 280 (336)
.+....|.+.|..-
T Consensus 94 ~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 94 KLKSESLTLSFVSL 107 (309)
T ss_pred hcCCcceeEEEEEE
Confidence 35667778777653
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.31 E-value=19 Score=26.85 Aligned_cols=38 Identities=13% Similarity=0.355 Sum_probs=22.7
Q ss_pred cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHH
Q psy12549 216 NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPE 254 (336)
Q Consensus 216 t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~ 254 (336)
+.++|.+.|+.|.++. ++.+.....++|++.|.|.+.-
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 4478999999998875 4444433456899999998753
No 233
>KOG4213|consensus
Probab=45.75 E-value=30 Score=27.78 Aligned_cols=57 Identities=21% Similarity=0.110 Sum_probs=41.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHH
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQG--NSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~~g~afV~F~~~~~a~~a~~~ 170 (336)
.+++|.+ |.+...++|.++-+ |.+..+.+.....+ ..+|-.||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3567766 44445556666555 78888877766554 5678999999999999988774
No 234
>KOG4019|consensus
Probab=45.69 E-value=16 Score=29.35 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=50.7
Q ss_pred ceEEEcCCCCCCcH-----HHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCE-EEEEee
Q psy12549 204 TNVYIKNFGEDFND-----EKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK-ILYVGR 277 (336)
Q Consensus 204 ~~l~V~nlp~~~t~-----~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~-~l~v~~ 277 (336)
.++.+.+++..+-. .....+|..|.+....++++. .+...|.|.+++.|..|...+++..|.|. .+...+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 44566666654322 233455666655554444432 44567899999999999999999999988 788877
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
+.+..
T Consensus 87 aQ~~~ 91 (193)
T KOG4019|consen 87 AQPGH 91 (193)
T ss_pred ccCCC
Confidence 76543
No 235
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=44.12 E-value=86 Score=24.36 Aligned_cols=56 Identities=7% Similarity=0.211 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~ 169 (336)
+-|+--++...+..+|++.++. |+ .|..|..+..+.|.- -|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 4566667788999999999987 55 466666655554433 49999988777654433
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.83 E-value=68 Score=20.85 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCeeEEEE
Q psy12549 125 KAMYDTFSAFGSILSCKV 142 (336)
Q Consensus 125 ~~l~~~f~~~G~v~~~~~ 142 (336)
.+|+++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999875443
No 237
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.35 E-value=46 Score=29.64 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=38.6
Q ss_pred EEEEeCCcchhhHHHHHhhcCccccCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhc
Q psy12549 65 ILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133 (336)
Q Consensus 65 afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 133 (336)
|||.|.+. .+|..|++.+.... ++.+.+..++.. .-|.=.||..+..+..++..+..
T Consensus 1 aFVtF~~~--~~a~~~~q~~~~~~--~~~~~v~~APeP--------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQ--KSAQIALQLLLSKR--PNSWRVSPAPEP--------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCH--HHHHHHHHHHhcCC--CCCceEeeCCCc--------ccccccccCCChHHHHHHHHHHH
Confidence 79999999 99999999544333 244466665432 23777888777777777666543
No 238
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.73 E-value=70 Score=28.48 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=34.3
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhc
Q psy12549 154 GFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225 (336)
Q Consensus 154 afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~ 225 (336)
|||.|.+..+|+.|.+.+....- +.+.+..+.++ ..|.=.||.....+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP--------------~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP--------------DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc--------------ccccccccCCChHHHHHHHHHH
Confidence 79999999999999996544333 33355444333 2255566655555555554443
No 239
>KOG2295|consensus
Probab=36.27 E-value=6.2 Score=37.21 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=52.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
.++++++|++++.+-++|..+++.+.-...+-+.... ...-....+|.|.-.-...-|+.+||++.+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 3579999999999999999999988665555444332 23345678999998888888888888866543
No 240
>KOG2891|consensus
Probab=33.58 E-value=60 Score=27.95 Aligned_cols=70 Identities=17% Similarity=0.394 Sum_probs=45.4
Q ss_pred CCCCceEEEcCCCCC------------CCHHHHHHHhhccCCeeEEEEeeCC------CCCcc-----cE---------E
Q psy12549 107 KSGVGNVFIKNLDKS------------IDNKAMYDTFSAFGSILSCKVAQDE------QGNSK-----GY---------G 154 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~------------~t~~~l~~~f~~~G~v~~~~~~~~~------~~~~~-----g~---------a 154 (336)
...+.+|++.+||-. .+++-|+..|+.||.|..|.++.-. +|+.. || |
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 344568999999832 3677899999999999998876532 23332 22 3
Q ss_pred EEEeCCHHHHHHHHHHhCCcee
Q psy12549 155 FVHFETEEAANKSIEKVNGMLL 176 (336)
Q Consensus 155 fV~F~~~~~a~~a~~~l~~~~~ 176 (336)
||+|..-.--..|+..|.|..+
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 3555555555566666666543
No 241
>PF14893 PNMA: PNMA
Probab=31.53 E-value=44 Score=30.05 Aligned_cols=52 Identities=13% Similarity=0.320 Sum_probs=34.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhcc-CCceeEEEEeC---CCCccceEEEEEeCCHH
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEP-YGTITSYRVMN---NDGKSRGFGFVAYESPE 254 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~-~g~i~~~~i~~---~~~~~~g~afV~F~~~~ 254 (336)
.+.|.|.++|.++++++|.+.+.. +-++-.+++.. ....+...|+|+|...-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 367999999999999998877653 33333444443 22223556899997643
No 242
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.42 E-value=1.2e+02 Score=21.19 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=36.2
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQL 69 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f 69 (336)
..++...|||++++..+-|..-.......+.-+..++...+ ..-||+|-..
T Consensus 21 l~Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-----neqG~~~~t~ 71 (86)
T PF09707_consen 21 LLEIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-----NEQGFDFRTL 71 (86)
T ss_pred eEecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-----CCCCEEEEEe
Confidence 45788899999999999999888877655444444444332 2568888776
No 243
>KOG1295|consensus
Probab=30.81 E-value=67 Score=29.13 Aligned_cols=65 Identities=14% Similarity=0.318 Sum_probs=46.2
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCc-eeEEEEeC-C---CCccceEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGT-ITSYRVMN-N---DGKSRGFGFVAYESPEFAEKAVQAWNGKEV 268 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~-i~~~~i~~-~---~~~~~g~afV~F~~~~~a~~a~~~l~g~~~ 268 (336)
..+.|..||...+++++.+-..+|-. +....+.+ . ...-.+.|||.|..+++...-...++|..|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 56889999999999998887777643 22333332 1 111256799999999998777777777766
No 244
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=30.79 E-value=2.1e+02 Score=27.84 Aligned_cols=79 Identities=8% Similarity=0.156 Sum_probs=51.6
Q ss_pred EEEEeCCcchhhHHHHHhhcCccccCCeeeE-E-------------EeccCCC-----CcCCCCCceEEEcCCCCCCCHH
Q psy12549 65 ILVQLGQPYMLDTERALDTMNFDALKGRPIR-I-------------MWSQRDP-----SLRKSGVGNVFIKNLDKSIDNK 125 (336)
Q Consensus 65 afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~-v-------------~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~ 125 (336)
||+++.++ +.-+--.+.++...+.+..|. + +++.... .++......+|+.||+.++.++
T Consensus 239 C~iT~Tn~--~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 239 CYITYTNE--KTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred eeeecCCh--HHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 99999999 776666666666655432222 1 1111111 1333445689999999999998
Q ss_pred HHHHHhhccCCeeEEEEeeC
Q psy12549 126 AMYDTFSAFGSILSCKVAQD 145 (336)
Q Consensus 126 ~l~~~f~~~G~v~~~~~~~~ 145 (336)
-=.++....-..+.+.+.+.
T Consensus 317 VQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 317 VQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred HHHHHHHhCcccccceeecc
Confidence 77777777777777877763
No 245
>KOG4213|consensus
Probab=27.13 E-value=94 Score=25.07 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=38.3
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCC--ccceEEEEEeCCHHHHHHHHHH
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDG--KSRGFGFVAYESPEFAEKAVQA 262 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~--~~~g~afV~F~~~~~a~~a~~~ 262 (336)
++++.. |-+...++|.++-+ |.+..+.... ..+ ..+|-.||+|.+.++|.+.++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 556665 44444456666655 7888887766 222 4578899999999999887764
No 246
>KOG2295|consensus
Probab=27.13 E-value=9.5 Score=36.02 Aligned_cols=67 Identities=9% Similarity=0.161 Sum_probs=51.2
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
++++++|+++.++.++|..+++.+.-...+-+.. .......+++|+|+.--....|+.+||+..+..
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 7799999999999999999999887666655543 112234568899988777888888888877654
No 247
>PF14893 PNMA: PNMA
Probab=27.01 E-value=63 Score=29.03 Aligned_cols=53 Identities=8% Similarity=0.224 Sum_probs=32.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeeC--CCCCcccEEEEEeCCHHH
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSA-FGSILSCKVAQD--EQGNSKGYGFVHFETEEA 163 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~~~~~--~~~~~~g~afV~F~~~~~ 163 (336)
+.|.|.|||.++++++|.+.+.. +-++-.+++... ........|+|+|...-+
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 56999999999999999888754 222222333222 111123378899886644
No 248
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=26.75 E-value=1.6e+02 Score=28.49 Aligned_cols=87 Identities=6% Similarity=0.082 Sum_probs=51.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE---eeccCchhhhHh----------hhccccccceEEEcCCCCCCcH
Q psy12549 151 KGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV---GKFIPRKEREKE----------LGEKAKLFTNVYIKNFGEDFND 217 (336)
Q Consensus 151 ~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v---~~~~~~~~~~~~----------~~~~~~~~~~l~V~nlp~~~t~ 217 (336)
+--||+++.++.--+-..+.|+...+.+-.|.- .++.+-.++--. ..+.......+|+.+|+-+..+
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 336999999999888888888776654433321 111111111000 0111122367999999888887
Q ss_pred HHHHHhhccCCceeEEEEeC
Q psy12549 218 EKLKEMFEPYGTITSYRVMN 237 (336)
Q Consensus 218 ~~l~~~f~~~g~i~~~~i~~ 237 (336)
+-=.++.......+++.+.+
T Consensus 316 dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 316 DVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHHhCcccccceeec
Confidence 66566666666677777765
No 249
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.67 E-value=1e+02 Score=20.49 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=21.4
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 244 GFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 244 g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
.+.+|.|.+..+|.+|-+.|...-+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 357899999999999988877655543
No 250
>PHA01632 hypothetical protein
Probab=24.43 E-value=56 Score=20.53 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=17.4
Q ss_pred EEEcCCCCCCcHHHHHHhhcc
Q psy12549 206 VYIKNFGEDFNDEKLKEMFEP 226 (336)
Q Consensus 206 l~V~nlp~~~t~~~l~~~f~~ 226 (336)
+.|..+|...|+++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 556789999999999987764
No 251
>KOG4019|consensus
Probab=22.52 E-value=1.3e+02 Score=24.40 Aligned_cols=39 Identities=10% Similarity=0.289 Sum_probs=32.4
Q ss_pred CceEEEEEeCCcchhhHHHHHhhcCccccCCe-eeEEEeccC
Q psy12549 61 GSGAILVQLGQPYMLDTERALDTMNFDALKGR-PIRIMWSQR 101 (336)
Q Consensus 61 ~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~-~i~v~~~~~ 101 (336)
+.|...|.|.++ +.|..|...++...|.|+ .+..-+++.
T Consensus 50 sfrrvRi~f~~p--~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 50 SFRRVRINFSNP--EAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred hhceeEEeccCh--hHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 556789999999 999999999999999988 666655544
No 252
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.27 E-value=2.4e+02 Score=20.24 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=35.0
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCc
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQP 72 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~ 72 (336)
..++...|||++++..+-|.--..+-...+--++.+....+ ...||+|-.+...
T Consensus 23 llEv~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~-----~eqG~~~~t~G~~ 76 (97)
T PRK11558 23 LLEVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN-----TESGFEFQTFGEN 76 (97)
T ss_pred eEecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC-----CCCCcEEEecCCC
Confidence 45778899999999998887776655444333333433221 2348888876655
No 253
>KOG4008|consensus
Probab=20.17 E-value=60 Score=27.36 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=26.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhcCCCCCeee
Q psy12549 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334 (336)
Q Consensus 304 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~V~~ 334 (336)
...++|+-|+|...+++.|.++-+++|-+..
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 4468999999999999999999999986543
Done!