Query psy12549
Match_columns 336
No_of_seqs 215 out of 2846
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 22:10:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.1E-46 3.8E-51 330.6 29.5 253 15-291 19-274 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.7E-46 5.9E-51 330.7 25.6 249 14-281 37-291 (292)
3 3smz_A Protein raver-1, ribonu 100.0 1E-36 3.5E-41 267.2 23.7 192 110-336 22-216 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 4.4E-37 1.5E-41 270.6 21.0 201 108-336 39-242 (292)
5 4f02_A Polyadenylate-binding p 100.0 5E-35 1.7E-39 245.4 22.1 171 109-285 14-185 (213)
6 4f02_A Polyadenylate-binding p 100.0 3E-35 1E-39 246.8 16.9 180 10-195 7-187 (213)
7 3md3_A Nuclear and cytoplasmic 100.0 7.3E-34 2.5E-38 228.9 20.7 164 111-280 1-166 (166)
8 3md3_A Nuclear and cytoplasmic 100.0 3.5E-33 1.2E-37 224.8 19.7 163 19-187 1-165 (166)
9 1l3k_A Heterogeneous nuclear r 100.0 7.5E-33 2.6E-37 229.2 21.2 175 108-286 11-188 (196)
10 1b7f_A Protein (SXL-lethal pro 100.0 3.6E-33 1.2E-37 225.3 18.8 161 110-278 3-168 (168)
11 1fxl_A Paraneoplastic encephal 100.0 8.5E-33 2.9E-37 222.8 20.5 161 110-278 2-167 (167)
12 2qfj_A FBP-interacting repress 100.0 1.7E-32 5.8E-37 230.6 19.5 173 110-282 28-206 (216)
13 2cjk_A Nuclear polyadenylated 100.0 7.3E-33 2.5E-37 223.4 15.2 161 110-281 3-166 (167)
14 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-32 8.9E-37 220.3 16.6 163 17-186 2-168 (168)
15 1fxl_A Paraneoplastic encephal 100.0 4.3E-32 1.5E-36 218.7 17.8 163 17-186 1-167 (167)
16 3nmr_A Cugbp ELAV-like family 100.0 5E-32 1.7E-36 220.0 17.6 164 109-279 2-175 (175)
17 1l3k_A Heterogeneous nuclear r 100.0 1E-31 3.4E-36 222.4 18.5 173 14-193 9-187 (196)
18 1fje_B Nucleolin RBD12, protei 100.0 3E-32 1E-36 221.5 13.6 165 107-281 10-174 (175)
19 2qfj_A FBP-interacting repress 100.0 1.2E-31 4.1E-36 225.4 16.1 173 14-191 24-207 (216)
20 1fje_B Nucleolin RBD12, protei 100.0 7.4E-32 2.5E-36 219.2 13.3 166 13-189 8-174 (175)
21 3nmr_A Cugbp ELAV-like family 100.0 3.6E-31 1.2E-35 215.0 16.8 164 17-186 2-174 (175)
22 2g4b_A Splicing factor U2AF 65 100.0 7.4E-31 2.5E-35 212.6 17.8 156 110-279 4-172 (172)
23 2cjk_A Nuclear polyadenylated 100.0 5E-32 1.7E-36 218.4 10.3 164 16-189 1-166 (167)
24 3tyt_A Heterogeneous nuclear r 100.0 1.1E-30 3.8E-35 216.8 18.3 166 109-278 3-204 (205)
25 2g4b_A Splicing factor U2AF 65 100.0 2E-30 6.7E-35 210.1 17.7 157 16-186 2-171 (172)
26 2yh0_A Splicing factor U2AF 65 100.0 2.8E-30 9.7E-35 214.0 17.1 168 110-283 4-196 (198)
27 2yh0_A Splicing factor U2AF 65 100.0 9.6E-30 3.3E-34 210.8 17.9 169 16-190 2-195 (198)
28 2adc_A Polypyrimidine tract-bi 100.0 1.8E-29 6.3E-34 213.9 18.4 170 105-281 29-228 (229)
29 3pgw_A U1-A; protein-RNA compl 100.0 4.8E-29 1.6E-33 218.1 21.4 167 108-279 7-281 (282)
30 3sde_A Paraspeckle component 1 100.0 1.6E-29 5.5E-34 218.4 17.4 156 108-282 20-180 (261)
31 1qm9_A Polypyrimidine tract-bi 100.0 5.6E-30 1.9E-34 212.3 13.0 166 109-281 2-197 (198)
32 3pgw_A U1-A; protein-RNA compl 100.0 1E-28 3.4E-33 216.1 19.3 162 14-187 5-281 (282)
33 3tyt_A Heterogeneous nuclear r 100.0 3.1E-29 1.1E-33 208.0 15.2 159 16-185 2-203 (205)
34 3sde_A Paraspeckle component 1 100.0 1.2E-28 4E-33 213.0 17.9 162 11-191 15-181 (261)
35 2adc_A Polypyrimidine tract-bi 100.0 1.6E-28 5.4E-33 208.1 17.0 164 12-189 28-228 (229)
36 1qm9_A Polypyrimidine tract-bi 100.0 3.3E-28 1.1E-32 201.6 15.1 158 18-189 3-197 (198)
37 4f25_A Polyadenylate-binding p 99.9 4.7E-23 1.6E-27 154.9 10.4 110 109-219 4-113 (115)
38 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-22 4E-27 161.9 13.1 139 46-191 2-152 (158)
39 4f25_A Polyadenylate-binding p 99.9 2.2E-22 7.6E-27 151.2 9.6 108 204-321 6-113 (115)
40 2kn4_A Immunoglobulin G-bindin 99.9 8.5E-22 2.9E-26 156.9 11.8 143 139-282 2-151 (158)
41 2i2y_A Fusion protein consists 99.9 2.1E-21 7.2E-26 153.1 10.8 123 60-189 11-148 (150)
42 2i2y_A Fusion protein consists 99.8 2.3E-21 7.9E-26 152.9 8.3 129 149-281 11-148 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 7.2E-20 2.4E-24 133.4 11.4 80 109-188 18-98 (99)
44 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-19 6.1E-24 131.3 10.4 78 203-280 19-98 (99)
45 3s8s_A Histone-lysine N-methyl 99.8 3.3E-18 1.1E-22 126.9 12.6 86 109-194 5-91 (110)
46 3s8s_A Histone-lysine N-methyl 99.8 3.5E-18 1.2E-22 126.8 12.4 83 202-284 5-89 (110)
47 2lxi_A RNA-binding protein 10; 99.8 4.5E-19 1.5E-23 127.1 6.4 80 111-190 2-84 (91)
48 3lqv_A PRE-mRNA branch site pr 99.8 9E-19 3.1E-23 131.6 6.8 103 202-331 7-109 (115)
49 2lxi_A RNA-binding protein 10; 99.8 5.9E-19 2E-23 126.5 5.3 80 204-283 2-85 (91)
50 2lea_A Serine/arginine-rich sp 99.8 6.6E-19 2.2E-23 135.9 5.8 124 63-191 5-129 (135)
51 3md1_A Nuclear and cytoplasmic 99.8 9.8E-18 3.3E-22 118.1 11.4 79 111-189 2-81 (83)
52 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.1E-18 3.1E-22 119.4 11.3 81 109-189 5-86 (87)
53 3lqv_A PRE-mRNA branch site pr 99.8 3.1E-18 1E-22 128.6 9.1 104 108-229 6-109 (115)
54 2do4_A Squamous cell carcinoma 99.7 1.6E-17 5.3E-22 121.5 12.2 83 108-190 15-97 (100)
55 2lkz_A RNA-binding protein 5; 99.7 2.3E-18 7.9E-23 123.9 7.5 78 111-188 10-94 (95)
56 2lkz_A RNA-binding protein 5; 99.7 2.9E-18 9.9E-23 123.4 8.0 80 201-280 7-94 (95)
57 3md1_A Nuclear and cytoplasmic 99.7 9.9E-18 3.4E-22 118.1 10.5 79 204-282 2-82 (83)
58 2lea_A Serine/arginine-rich sp 99.7 6.8E-19 2.3E-23 135.8 4.6 123 152-283 5-129 (135)
59 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.9E-22 118.9 10.2 79 203-281 6-86 (87)
60 2hvz_A Splicing factor, argini 99.7 1.8E-18 6E-23 126.8 5.8 98 111-212 1-100 (101)
61 2x1f_A MRNA 3'-END-processing 99.7 2.2E-17 7.7E-22 119.6 11.5 85 110-194 2-87 (96)
62 2cq0_A Eukaryotic translation 99.7 1.3E-17 4.4E-22 122.6 10.2 86 106-191 11-97 (103)
63 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.7E-17 5.7E-22 117.5 10.4 80 108-187 5-85 (85)
64 2dnh_A Bruno-like 5, RNA bindi 99.7 1.4E-17 4.9E-22 122.8 10.3 84 108-191 13-99 (105)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4.1E-22 118.2 9.5 79 201-279 5-85 (85)
66 2jrs_A RNA-binding protein 39; 99.7 1.2E-17 4E-22 123.7 9.8 85 105-189 21-106 (108)
67 2cqc_A Arginine/serine-rich sp 99.7 3.8E-17 1.3E-21 118.2 12.3 82 107-188 12-94 (95)
68 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-17 3.6E-22 133.9 10.2 129 156-284 11-155 (165)
69 1whw_A Hypothetical protein ri 99.7 2.3E-17 7.9E-22 120.3 11.0 85 108-192 6-91 (99)
70 3p5t_L Cleavage and polyadenyl 99.7 3.3E-18 1.1E-22 122.5 6.3 81 111-191 2-85 (90)
71 2ywk_A Putative RNA-binding pr 99.7 2.7E-17 9.2E-22 119.0 11.1 81 108-188 14-94 (95)
72 2x1f_A MRNA 3'-END-processing 99.7 2.9E-17 1E-21 119.0 11.2 84 203-286 2-87 (96)
73 2la6_A RNA-binding protein FUS 99.7 2.9E-17 9.8E-22 119.8 11.0 82 105-186 8-98 (99)
74 2e5h_A Zinc finger CCHC-type a 99.7 4.6E-17 1.6E-21 117.5 11.8 80 108-187 14-94 (94)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.2E-17 7.5E-22 132.1 11.2 124 67-192 11-155 (165)
76 3r27_A HnRNP L, heterogeneous 99.7 1.8E-17 6.1E-22 119.3 9.3 78 201-282 19-98 (100)
77 2dnz_A Probable RNA-binding pr 99.7 2.4E-17 8.3E-22 119.2 10.1 83 109-191 4-87 (95)
78 1s79_A Lupus LA protein; RRM, 99.7 9.9E-18 3.4E-22 122.7 8.0 83 109-192 10-92 (103)
79 2wbr_A GW182, gawky, LD47780P; 99.7 1.8E-17 6.3E-22 114.8 8.9 73 203-279 7-79 (89)
80 2dgo_A Cytotoxic granule-assoc 99.7 6.4E-17 2.2E-21 121.4 12.6 87 106-192 11-98 (115)
81 2d9p_A Polyadenylate-binding p 99.7 2.8E-17 9.5E-22 120.8 10.3 85 106-191 11-95 (103)
82 2do4_A Squamous cell carcinoma 99.7 3.3E-17 1.1E-21 119.7 10.6 81 202-282 16-97 (100)
83 2cpz_A CUG triplet repeat RNA- 99.7 3.9E-17 1.3E-21 122.5 11.2 85 107-191 22-107 (115)
84 2e5h_A Zinc finger CCHC-type a 99.7 3.8E-17 1.3E-21 118.0 10.8 79 201-279 14-94 (94)
85 1x5t_A Splicing factor 3B subu 99.7 1.3E-17 4.4E-22 121.0 8.0 83 109-191 4-88 (96)
86 1p27_B RNA-binding protein 8A; 99.7 2.9E-17 9.8E-22 121.4 10.0 83 108-190 21-104 (106)
87 2fy1_A RNA-binding motif prote 99.7 2.1E-17 7.1E-22 124.0 9.3 85 108-192 5-89 (116)
88 2cqc_A Arginine/serine-rich sp 99.7 4.7E-17 1.6E-21 117.7 10.9 80 201-280 13-94 (95)
89 3ns6_A Eukaryotic translation 99.7 9.4E-18 3.2E-22 122.5 7.1 81 203-283 6-95 (100)
90 1whw_A Hypothetical protein ri 99.7 3.1E-17 1.1E-21 119.6 9.8 82 202-283 7-90 (99)
91 2cq3_A RNA-binding protein 9; 99.7 6.7E-17 2.3E-21 118.7 11.6 83 201-283 13-95 (103)
92 2dnz_A Probable RNA-binding pr 99.7 3.4E-17 1.1E-21 118.5 9.8 82 202-283 4-87 (95)
93 1x5u_A Splicing factor 3B subu 99.7 3.9E-17 1.3E-21 120.5 10.3 86 106-191 11-97 (105)
94 3ns6_A Eukaryotic translation 99.7 6E-18 2E-22 123.6 5.8 81 110-190 6-94 (100)
95 1sjq_A Polypyrimidine tract-bi 99.7 1.8E-17 6E-22 120.5 8.1 80 200-283 13-94 (105)
96 2dgs_A DAZ-associated protein 99.7 5.3E-17 1.8E-21 118.4 10.7 83 108-191 8-91 (99)
97 2cq3_A RNA-binding protein 9; 99.7 1.2E-16 4.3E-21 117.3 12.7 85 106-191 11-95 (103)
98 2cq0_A Eukaryotic translation 99.7 4.9E-17 1.7E-21 119.5 10.5 83 201-283 13-97 (103)
99 2jrs_A RNA-binding protein 39; 99.7 2.3E-17 7.8E-22 122.1 8.8 83 200-282 23-107 (108)
100 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.5E-17 1.6E-21 119.7 10.3 83 201-283 13-95 (103)
101 3s7r_A Heterogeneous nuclear r 99.7 9.1E-17 3.1E-21 114.2 11.5 79 107-186 8-87 (87)
102 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.4E-17 1.5E-21 119.5 10.2 84 108-191 10-94 (102)
103 2dnm_A SRP46 splicing factor; 99.7 2.9E-17 9.9E-22 120.7 9.2 86 106-191 9-95 (103)
104 3ulh_A THO complex subunit 4; 99.7 9E-17 3.1E-21 118.9 11.9 80 108-187 27-106 (107)
105 3p5t_L Cleavage and polyadenyl 99.7 6E-18 2.1E-22 121.1 5.3 80 204-283 2-85 (90)
106 4a8x_A RNA-binding protein wit 99.7 3E-17 1E-21 117.0 8.9 82 109-190 3-86 (88)
107 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.3E-16 4.5E-21 117.2 12.6 84 107-191 12-95 (103)
108 1oo0_B CG8781-PA, drosophila Y 99.7 4.6E-17 1.6E-21 121.1 10.2 83 108-190 24-107 (110)
109 3ucg_A Polyadenylate-binding p 99.7 6.1E-17 2.1E-21 115.6 10.4 79 110-189 6-85 (89)
110 2dgv_A HnRNP M, heterogeneous 99.7 2.7E-17 9.1E-22 118.3 8.5 81 202-282 7-87 (92)
111 2ywk_A Putative RNA-binding pr 99.7 5.2E-17 1.8E-21 117.5 10.0 80 201-280 14-94 (95)
112 2d9p_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 120.4 9.1 82 202-283 14-95 (103)
113 2err_A Ataxin-2-binding protei 99.7 3.2E-17 1.1E-21 121.7 8.9 82 200-281 26-107 (109)
114 1x4h_A RNA-binding protein 28; 99.7 9.3E-17 3.2E-21 119.7 11.5 84 108-191 13-103 (111)
115 1p27_B RNA-binding protein 8A; 99.7 2.7E-17 9.2E-22 121.6 8.5 82 201-282 21-104 (106)
116 1x5s_A Cold-inducible RNA-bind 99.7 3.5E-17 1.2E-21 120.1 8.7 84 108-191 10-94 (102)
117 3ulh_A THO complex subunit 4; 99.7 7.6E-17 2.6E-21 119.3 10.6 80 200-279 26-106 (107)
118 2err_A Ataxin-2-binding protei 99.7 5.6E-17 1.9E-21 120.3 9.9 85 104-189 23-107 (109)
119 2cph_A RNA binding motif prote 99.7 7.4E-17 2.5E-21 119.4 10.5 86 106-191 11-99 (107)
120 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.5E-17 1.5E-21 119.4 9.2 83 201-283 10-94 (102)
121 2cpf_A RNA binding motif prote 99.7 4.9E-17 1.7E-21 118.3 9.3 82 202-283 4-90 (98)
122 1sjq_A Polypyrimidine tract-bi 99.7 5.1E-17 1.7E-21 118.1 9.2 79 108-191 14-94 (105)
123 3n9u_C Cleavage and polyadenyl 99.7 5.5E-17 1.9E-21 128.0 10.2 83 109-191 54-139 (156)
124 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-16 3.7E-21 115.9 11.0 81 108-190 7-91 (96)
125 1x5t_A Splicing factor 3B subu 99.7 3.2E-17 1.1E-21 118.9 8.2 82 202-283 4-88 (96)
126 2cpf_A RNA binding motif prote 99.7 7.2E-17 2.5E-21 117.4 10.1 83 109-191 4-90 (98)
127 2dgs_A DAZ-associated protein 99.7 6.2E-17 2.1E-21 118.0 9.7 82 201-283 8-91 (99)
128 1oo0_B CG8781-PA, drosophila Y 99.7 5E-17 1.7E-21 120.9 9.3 82 201-282 24-107 (110)
129 2wbr_A GW182, gawky, LD47780P; 99.7 8.2E-17 2.8E-21 111.6 9.5 73 110-187 7-79 (89)
130 2do0_A HnRNP M, heterogeneous 99.7 2E-16 6.7E-21 118.5 12.4 83 108-190 13-95 (114)
131 2dgw_A Probable RNA-binding pr 99.7 1.6E-16 5.4E-21 113.9 11.4 80 108-189 8-87 (91)
132 2cpz_A CUG triplet repeat RNA- 99.7 5.6E-17 1.9E-21 121.7 9.4 82 202-283 24-107 (115)
133 2dgo_A Cytotoxic granule-assoc 99.7 9.9E-17 3.4E-21 120.3 10.6 83 201-283 13-97 (115)
134 2div_A TRNA selenocysteine ass 99.7 7E-17 2.4E-21 117.7 9.5 83 108-190 7-95 (99)
135 2dgp_A Bruno-like 4, RNA bindi 99.7 7E-17 2.4E-21 119.3 9.5 86 106-191 9-98 (106)
136 2dhg_A TRNA selenocysteine ass 99.7 5.8E-17 2E-21 119.3 9.0 84 108-191 7-92 (104)
137 2cpi_A CCR4-NOT transcription 99.7 7.8E-17 2.7E-21 120.0 9.7 81 202-282 14-102 (111)
138 3r27_A HnRNP L, heterogeneous 99.7 1.2E-16 4.1E-21 114.9 10.3 77 108-189 19-97 (100)
139 1p1t_A Cleavage stimulation fa 99.7 6.4E-17 2.2E-21 119.1 9.1 85 110-194 8-93 (104)
140 2la6_A RNA-binding protein FUS 99.7 7.7E-17 2.6E-21 117.5 9.3 80 200-279 10-99 (99)
141 1s79_A Lupus LA protein; RRM, 99.7 3.7E-17 1.3E-21 119.6 7.6 78 203-281 11-89 (103)
142 2dgv_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 115.2 9.8 82 108-190 6-87 (92)
143 2hgl_A HNRPF protein, heteroge 99.7 4.4E-17 1.5E-21 125.1 8.2 83 107-190 41-126 (136)
144 2khc_A Testis-specific RNP-typ 99.7 9.3E-17 3.2E-21 121.0 9.9 80 107-186 37-117 (118)
145 2kxn_B Transformer-2 protein h 99.7 7.1E-17 2.4E-21 123.3 9.3 84 107-190 43-127 (129)
146 2dnh_A Bruno-like 5, RNA bindi 99.7 7.6E-17 2.6E-21 118.9 9.1 82 202-283 14-99 (105)
147 1p1t_A Cleavage stimulation fa 99.7 7.3E-17 2.5E-21 118.8 9.0 83 203-285 8-92 (104)
148 2hvz_A Splicing factor, argini 99.7 4.9E-18 1.7E-22 124.4 2.6 100 204-314 1-100 (101)
149 2dgx_A KIAA0430 protein; RRM d 99.7 1.2E-16 4E-21 115.8 9.7 80 202-282 8-91 (96)
150 2dng_A Eukaryotic translation 99.7 2.2E-16 7.7E-21 115.9 11.4 82 108-191 13-95 (103)
151 4a8x_A RNA-binding protein wit 99.7 6.3E-17 2.2E-21 115.3 8.2 79 203-281 4-85 (88)
152 2cpe_A RNA-binding protein EWS 99.7 1.4E-16 4.7E-21 119.1 10.4 85 107-191 12-105 (113)
153 2cph_A RNA binding motif prote 99.7 8.2E-17 2.8E-21 119.1 9.0 83 201-283 13-99 (107)
154 1x4d_A Matrin 3; structural ge 99.7 5.1E-17 1.7E-21 118.1 7.6 77 201-281 13-92 (102)
155 3ucg_A Polyadenylate-binding p 99.7 1.1E-16 3.7E-21 114.3 9.2 77 204-281 7-85 (89)
156 1x5s_A Cold-inducible RNA-bind 99.7 3.8E-17 1.3E-21 119.8 7.1 82 201-282 10-93 (102)
157 1x5u_A Splicing factor 3B subu 99.7 6.3E-17 2.2E-21 119.3 8.2 83 201-283 13-97 (105)
158 2dh8_A DAZ-associated protein 99.7 1.4E-16 4.6E-21 117.5 9.8 84 107-191 13-97 (105)
159 2mss_A Protein (musashi1); RNA 99.7 4E-17 1.4E-21 112.6 6.4 74 112-186 1-75 (75)
160 2cq1_A PTB-like protein L; RRM 99.7 2.4E-16 8.1E-21 114.7 10.8 78 201-282 13-92 (101)
161 2nlw_A Eukaryotic translation 99.7 3.9E-17 1.3E-21 120.4 6.7 80 202-281 14-100 (105)
162 3n9u_C Cleavage and polyadenyl 99.7 2.2E-16 7.5E-21 124.6 11.5 80 203-282 55-138 (156)
163 2fy1_A RNA-binding motif prote 99.7 8.7E-17 3E-21 120.6 8.7 81 202-282 6-87 (116)
164 1x4h_A RNA-binding protein 28; 99.7 1.2E-16 4.1E-21 119.1 9.4 83 201-283 13-103 (111)
165 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-16 5.1E-21 118.0 9.8 84 106-190 21-105 (109)
166 1wi8_A EIF-4B, eukaryotic tran 99.7 1.8E-16 6.2E-21 116.6 10.2 82 108-191 13-96 (104)
167 2cpi_A CCR4-NOT transcription 99.7 1.6E-16 5.4E-21 118.3 9.9 83 108-190 13-102 (111)
168 1u6f_A Tcubp1, RNA-binding pro 99.7 2.1E-16 7.1E-21 122.7 11.0 87 106-192 38-125 (139)
169 2cqp_A RNA-binding protein 12; 99.7 1.1E-16 3.7E-21 116.5 8.7 82 108-189 13-95 (98)
170 1x4e_A RNA binding motif, sing 99.7 3.1E-17 1.1E-21 116.1 5.6 80 108-187 3-83 (85)
171 2nlw_A Eukaryotic translation 99.7 1.2E-16 4E-21 117.8 8.7 82 107-189 12-100 (105)
172 2kt5_A RNA and export factor-b 99.7 3.4E-16 1.2E-20 119.0 11.5 83 108-190 33-115 (124)
173 3s7r_A Heterogeneous nuclear r 99.7 2.8E-16 9.4E-21 111.7 10.3 77 201-278 9-87 (87)
174 2ek1_A RNA-binding protein 12; 99.7 8.1E-17 2.8E-21 116.5 7.6 80 109-188 14-94 (95)
175 2ek1_A RNA-binding protein 12; 99.7 8.9E-17 3E-21 116.2 7.8 78 203-280 15-94 (95)
176 2do0_A HnRNP M, heterogeneous 99.7 3.2E-16 1.1E-20 117.3 11.1 80 202-281 14-94 (114)
177 2krb_A Eukaryotic translation 99.7 3.1E-17 1.1E-21 114.9 5.1 72 204-275 2-80 (81)
178 2db1_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 119.7 9.2 82 108-190 15-99 (118)
179 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.7E-17 1.3E-21 119.4 5.7 82 106-189 15-98 (100)
180 2dgw_A Probable RNA-binding pr 99.7 2.6E-16 9E-21 112.8 10.1 79 202-282 9-88 (91)
181 2dnn_A RNA-binding protein 12; 99.7 1.3E-16 4.3E-21 117.8 8.6 79 109-189 15-93 (109)
182 2cq1_A PTB-like protein L; RRM 99.7 4.3E-16 1.5E-20 113.3 11.3 80 107-191 12-93 (101)
183 2cqd_A RNA-binding region cont 99.7 3.3E-16 1.1E-20 117.6 11.0 83 107-190 14-97 (116)
184 3pgw_S U1-70K; protein-RNA com 99.7 6.4E-17 2.2E-21 148.5 8.6 83 108-190 100-183 (437)
185 2hgn_A Heterogeneous nuclear r 99.7 1.8E-17 6E-22 127.7 4.1 124 63-191 2-125 (139)
186 2khc_A Testis-specific RNP-typ 99.7 1.4E-16 4.9E-21 120.0 9.0 79 201-279 38-118 (118)
187 2dnm_A SRP46 splicing factor; 99.7 1.9E-16 6.4E-21 116.3 9.4 89 11-104 6-95 (103)
188 2cqp_A RNA-binding protein 12; 99.7 1.1E-16 3.8E-21 116.4 8.0 80 202-281 14-95 (98)
189 1x4a_A Splicing factor, argini 99.7 2.8E-16 9.7E-21 116.6 10.4 81 201-282 20-100 (109)
190 2cpy_A RNA-binding protein 12; 99.7 1.9E-16 6.4E-21 118.5 9.4 86 107-193 12-98 (114)
191 2div_A TRNA selenocysteine ass 99.7 1.1E-16 3.7E-21 116.7 7.9 81 201-281 7-94 (99)
192 2cq4_A RNA binding motif prote 99.7 1.6E-16 5.5E-21 118.9 9.0 81 110-191 25-106 (114)
193 1x5o_A RNA binding motif, sing 99.7 3.9E-16 1.3E-20 116.9 10.9 82 108-189 23-112 (114)
194 2cpe_A RNA-binding protein EWS 99.7 2E-16 6.9E-21 118.2 9.3 83 201-283 13-105 (113)
195 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.1E-21 122.1 8.2 82 201-282 44-127 (129)
196 1x4d_A Matrin 3; structural ge 99.7 1.5E-16 5.1E-21 115.6 8.3 78 108-190 13-93 (102)
197 1x4e_A RNA binding motif, sing 99.7 4.6E-17 1.6E-21 115.2 5.4 78 202-279 4-83 (85)
198 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.8E-17 2E-21 112.4 5.8 75 111-186 1-76 (77)
199 2dng_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 114.8 10.3 80 202-283 14-95 (103)
200 2cqg_A TDP-43, TAR DNA-binding 99.7 8.6E-16 3E-20 112.7 12.4 83 107-191 12-95 (103)
201 1x4a_A Splicing factor, argini 99.7 7.3E-16 2.5E-20 114.4 12.1 83 107-191 19-101 (109)
202 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-16 4.7E-21 118.8 8.1 79 201-283 29-109 (119)
203 2a3j_A U1 small nuclear ribonu 99.7 1.3E-16 4.6E-21 121.0 8.1 83 201-284 27-113 (127)
204 2mss_A Protein (musashi1); RNA 99.7 6.2E-17 2.1E-21 111.6 5.6 73 205-278 1-75 (75)
205 1wi8_A EIF-4B, eukaryotic tran 99.7 2.6E-16 8.8E-21 115.8 9.3 80 202-283 14-96 (104)
206 2cq4_A RNA binding motif prote 99.7 2E-16 6.9E-21 118.4 8.8 79 203-282 25-105 (114)
207 2kt5_A RNA and export factor-b 99.7 2.5E-16 8.7E-21 119.7 9.3 84 199-282 31-115 (124)
208 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.8E-16 2.3E-20 122.2 12.1 84 108-191 37-121 (156)
209 2la4_A Nuclear and cytoplasmic 99.7 2.9E-16 1E-20 114.8 9.3 79 199-281 23-101 (101)
210 1nu4_A U1A RNA binding domain; 99.7 1.3E-16 4.4E-21 115.9 7.3 83 201-284 6-92 (97)
211 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-16 6.6E-21 117.0 8.2 78 202-281 27-105 (111)
212 2jwn_A Embryonic polyadenylate 99.7 1E-16 3.5E-21 121.9 6.9 78 203-281 36-115 (124)
213 1wez_A HnRNP H', FTP-3, hetero 99.7 1.9E-16 6.3E-21 115.9 8.0 81 108-190 13-93 (102)
214 3ex7_B RNA-binding protein 8A; 99.7 2.1E-16 7.3E-21 120.5 8.7 84 108-191 20-104 (126)
215 2dhg_A TRNA selenocysteine ass 99.7 1.2E-16 4E-21 117.6 7.0 82 201-282 7-91 (104)
216 2dis_A Unnamed protein product 99.7 2.2E-16 7.6E-21 117.2 8.6 84 109-192 7-95 (109)
217 1wex_A Hypothetical protein (r 99.7 2E-16 6.8E-21 115.8 8.1 78 201-282 13-92 (104)
218 1wg5_A Heterogeneous nuclear r 99.7 2.4E-16 8.3E-21 115.9 8.6 81 108-189 13-94 (104)
219 2dgt_A RNA-binding protein 30; 99.7 5.7E-16 1.9E-20 111.2 10.3 77 201-283 8-84 (92)
220 2cqd_A RNA-binding region cont 99.7 3E-16 1E-20 117.9 9.1 80 201-281 15-96 (116)
221 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.9E-17 3E-21 117.3 5.9 80 201-282 17-99 (100)
222 2krb_A Eukaryotic translation 99.7 7.7E-17 2.6E-21 112.9 5.4 72 111-183 2-80 (81)
223 3pgw_S U1-70K; protein-RNA com 99.7 2E-17 7E-22 151.8 3.0 81 202-282 101-183 (437)
224 2rs2_A Musashi-1, RNA-binding 99.7 3.5E-16 1.2E-20 116.0 9.2 82 201-283 23-106 (109)
225 2xnq_A Nuclear polyadenylated 99.7 6E-16 2E-20 112.2 10.0 77 199-281 18-95 (97)
226 2dh8_A DAZ-associated protein 99.7 1.8E-16 6.1E-21 116.9 7.4 82 201-283 14-97 (105)
227 2fc9_A NCL protein; structure 99.7 6.7E-16 2.3E-20 112.9 10.4 81 108-191 13-93 (101)
228 2a3j_A U1 small nuclear ribonu 99.7 4.7E-16 1.6E-20 118.0 9.7 85 108-194 27-115 (127)
229 2dgp_A Bruno-like 4, RNA bindi 99.7 4.8E-16 1.6E-20 114.8 9.5 89 11-104 6-98 (106)
230 2jvo_A Nucleolar protein 3; nu 99.7 5.5E-16 1.9E-20 114.6 9.8 78 200-283 28-105 (108)
231 2ad9_A Polypyrimidine tract-bi 99.7 4.5E-16 1.6E-20 116.0 9.3 79 108-191 29-109 (119)
232 2dnq_A RNA-binding protein 4B; 99.7 3.6E-16 1.2E-20 111.8 8.5 77 201-283 6-82 (90)
233 2cpy_A RNA-binding protein 12; 99.7 3.3E-16 1.1E-20 117.2 8.6 81 201-282 13-95 (114)
234 1u6f_A Tcubp1, RNA-binding pro 99.7 3.2E-16 1.1E-20 121.6 8.9 83 201-283 40-124 (139)
235 2ki2_A SS-DNA binding protein 99.7 4.9E-17 1.7E-21 116.4 3.8 80 111-191 2-82 (90)
236 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-16 3.9E-21 110.9 5.6 74 204-278 1-76 (77)
237 3ex7_B RNA-binding protein 8A; 99.6 2.5E-16 8.5E-21 120.2 7.9 84 201-284 20-105 (126)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.3E-16 3.2E-20 119.2 11.3 79 108-186 61-140 (140)
239 2db1_A Heterogeneous nuclear r 99.6 3.6E-16 1.2E-20 117.6 8.6 80 201-281 15-98 (118)
240 1why_A Hypothetical protein ri 99.6 4.5E-16 1.5E-20 112.9 8.8 78 201-282 15-94 (97)
241 1x4b_A Heterogeneous nuclear r 99.6 5.1E-16 1.7E-20 116.6 9.4 81 110-191 27-108 (116)
242 2jwn_A Embryonic polyadenylate 99.6 5.7E-16 1.9E-20 117.8 9.6 80 110-190 36-116 (124)
243 2jvr_A Nucleolar protein 3; RN 99.6 5.6E-16 1.9E-20 114.6 9.2 78 109-189 27-105 (111)
244 1fjc_A Nucleolin RBD2, protein 99.6 3.4E-16 1.2E-20 113.4 7.9 79 201-282 14-92 (96)
245 2fc9_A NCL protein; structure 99.6 7.6E-16 2.6E-20 112.6 9.8 79 201-282 13-92 (101)
246 2m2b_A RNA-binding protein 10; 99.6 1.2E-16 4.2E-21 122.6 5.8 82 108-190 21-109 (131)
247 2ytc_A PRE-mRNA-splicing facto 99.6 6.5E-16 2.2E-20 109.2 9.0 75 201-279 10-85 (85)
248 1x4c_A Splicing factor, argini 99.6 1.2E-15 4E-20 113.0 10.7 76 202-282 14-94 (108)
249 2hgl_A HNRPF protein, heteroge 99.6 2.9E-16 9.8E-21 120.5 7.6 80 201-281 42-125 (136)
250 2dnp_A RNA-binding protein 14; 99.6 5.6E-16 1.9E-20 110.8 8.7 76 201-282 7-82 (90)
251 1x4b_A Heterogeneous nuclear r 99.6 6.9E-16 2.4E-20 115.9 9.5 80 203-283 27-108 (116)
252 1x4f_A Matrin 3; structural ge 99.6 1.3E-16 4.4E-21 117.6 5.3 79 200-282 22-103 (112)
253 2ki2_A SS-DNA binding protein 99.6 5.8E-17 2E-21 116.0 3.4 79 204-283 2-82 (90)
254 2ytc_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.4E-20 107.6 10.3 75 108-187 10-85 (85)
255 2dnn_A RNA-binding protein 12; 99.6 1.1E-15 3.9E-20 112.7 10.4 76 204-281 17-93 (109)
256 2cpj_A Non-POU domain-containi 99.6 5.1E-16 1.7E-20 113.1 8.4 78 201-282 13-90 (99)
257 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.7E-20 109.3 9.9 77 108-191 6-82 (90)
258 1h2v_Z 20 kDa nuclear CAP bind 99.6 9.7E-16 3.3E-20 121.3 10.6 83 201-283 37-121 (156)
259 1nu4_A U1A RNA binding domain; 99.6 4E-16 1.4E-20 113.2 7.7 83 108-192 6-92 (97)
260 1x4g_A Nucleolysin TIAR; struc 99.6 9.4E-16 3.2E-20 113.8 9.8 81 199-283 21-101 (109)
261 2cqg_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.5E-20 111.8 10.5 81 201-283 13-95 (103)
262 2lmi_A GRSF-1, G-rich sequence 99.6 1.9E-16 6.4E-21 117.1 5.8 83 107-190 8-93 (107)
263 1whx_A Hypothetical protein ri 99.6 4.1E-16 1.4E-20 115.9 7.6 75 203-281 10-84 (111)
264 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8.1E-16 2.8E-20 119.5 9.6 79 200-278 60-140 (140)
265 1x5o_A RNA binding motif, sing 99.6 8.8E-16 3E-20 114.9 9.4 80 202-281 24-112 (114)
266 2xnq_A Nuclear polyadenylated 99.6 2.1E-15 7.2E-20 109.3 11.0 77 106-189 18-95 (97)
267 1iqt_A AUF1, heterogeneous nuc 99.6 1.6E-16 5.6E-21 109.5 5.0 74 112-186 1-75 (75)
268 1why_A Hypothetical protein ri 99.6 1.1E-15 3.8E-20 110.8 9.6 77 109-190 16-94 (97)
269 1wg5_A Heterogeneous nuclear r 99.6 5.2E-16 1.8E-20 114.1 7.9 80 201-281 13-94 (104)
270 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-15 4.8E-20 112.4 10.2 79 106-191 27-105 (108)
271 1wf1_A RNA-binding protein RAL 99.6 9.4E-16 3.2E-20 114.0 9.3 94 90-190 6-101 (110)
272 1x4c_A Splicing factor, argini 99.6 1.9E-15 6.6E-20 111.8 10.9 77 108-190 13-94 (108)
273 2fc8_A NCL protein; structure 99.6 1.2E-15 4.2E-20 111.7 9.8 89 9-104 6-94 (102)
274 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-15 5E-20 112.7 10.2 79 108-191 23-101 (109)
275 2la4_A Nuclear and cytoplasmic 99.6 9.6E-16 3.3E-20 112.1 9.1 75 109-188 26-100 (101)
276 1fjc_A Nucleolin RBD2, protein 99.6 4.6E-16 1.6E-20 112.7 7.3 80 107-190 13-92 (96)
277 1wex_A Hypothetical protein (r 99.6 7.8E-16 2.7E-20 112.6 8.5 79 108-191 13-93 (104)
278 2cpj_A Non-POU domain-containi 99.6 1.2E-15 4.3E-20 111.0 9.4 78 108-190 13-90 (99)
279 2dgu_A Heterogeneous nuclear r 99.6 8.1E-16 2.8E-20 112.9 8.4 76 202-283 10-85 (103)
280 2dha_A FLJ20171 protein; RRM d 99.6 5.3E-16 1.8E-20 116.9 7.4 81 109-190 22-106 (123)
281 2fc8_A NCL protein; structure 99.6 2.1E-15 7.2E-20 110.4 10.5 84 105-191 10-94 (102)
282 2dgt_A RNA-binding protein 30; 99.6 3.2E-15 1.1E-19 107.3 11.2 78 107-191 7-84 (92)
283 2cpd_A Apobec-1 stimulating pr 99.6 2.2E-15 7.6E-20 109.7 10.5 76 201-282 13-90 (99)
284 2dis_A Unnamed protein product 99.6 4.4E-16 1.5E-20 115.6 6.7 82 202-283 7-94 (109)
285 2voo_A Lupus LA protein; RNA-b 99.6 3.2E-15 1.1E-19 122.3 12.4 116 75-191 65-189 (193)
286 1fj7_A Nucleolin RBD1, protein 99.6 1E-16 3.4E-21 117.4 2.9 83 107-191 14-97 (101)
287 1wez_A HnRNP H', FTP-3, hetero 99.6 1.7E-15 5.9E-20 110.7 9.5 83 14-103 11-93 (102)
288 2e5j_A Methenyltetrahydrofolat 99.6 1.5E-15 5.2E-20 110.1 8.9 80 107-190 16-95 (97)
289 2dnp_A RNA-binding protein 14; 99.6 2.7E-15 9.2E-20 107.2 10.0 76 108-190 7-82 (90)
290 3zzy_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 112.8 10.8 75 204-281 29-106 (130)
291 2kvi_A Nuclear polyadenylated 99.6 7.1E-16 2.4E-20 111.6 7.0 77 201-283 8-85 (96)
292 2xs2_A Deleted in azoospermia- 99.6 6.9E-16 2.4E-20 113.0 7.0 81 109-191 8-88 (102)
293 1wg1_A KIAA1579 protein, homol 99.6 2.2E-15 7.6E-20 107.1 9.4 74 203-281 5-78 (88)
294 1wel_A RNA-binding protein 12; 99.6 5.2E-16 1.8E-20 117.9 6.4 82 108-190 23-105 (124)
295 2e5j_A Methenyltetrahydrofolat 99.6 5.8E-16 2E-20 112.3 6.2 79 201-282 17-95 (97)
296 2hgn_A Heterogeneous nuclear r 99.6 2E-16 6.9E-21 121.8 3.4 123 152-283 2-125 (139)
297 1wel_A RNA-binding protein 12; 99.6 5.9E-16 2E-20 117.7 5.8 80 202-282 24-105 (124)
298 2cq2_A Hypothetical protein LO 99.6 1.6E-15 5.4E-20 111.8 7.8 80 199-282 21-107 (114)
299 2lmi_A GRSF-1, G-rich sequence 99.6 3.9E-16 1.3E-20 115.4 4.6 80 201-281 9-92 (107)
300 2m2b_A RNA-binding protein 10; 99.6 3.1E-16 1.1E-20 120.4 4.1 80 201-281 21-108 (131)
301 1whx_A Hypothetical protein ri 99.6 1.7E-15 5.9E-20 112.6 7.8 75 110-189 10-84 (111)
302 2cpx_A Hypothetical protein FL 99.6 9.2E-16 3.1E-20 115.0 6.4 80 202-283 24-107 (115)
303 1iqt_A AUF1, heterogeneous nuc 99.6 3.1E-16 1.1E-20 108.1 3.4 73 205-278 1-75 (75)
304 3q2s_C Cleavage and polyadenyl 99.6 1.8E-15 6.2E-20 127.1 8.6 83 109-191 67-152 (229)
305 2cqh_A IGF-II mRNA-binding pro 99.6 1.4E-15 4.6E-20 109.5 6.7 77 202-283 7-85 (93)
306 2dgu_A Heterogeneous nuclear r 99.6 8.4E-15 2.9E-19 107.4 10.9 77 109-192 10-86 (103)
307 2f3j_A RNA and export factor b 99.6 3.3E-15 1.1E-19 120.4 9.4 83 108-190 86-168 (177)
308 2dha_A FLJ20171 protein; RRM d 99.6 1.5E-15 5E-20 114.5 6.8 80 201-281 21-105 (123)
309 2kvi_A Nuclear polyadenylated 99.6 2.1E-15 7.3E-20 109.1 7.3 78 108-192 8-86 (96)
310 1fj7_A Nucleolin RBD1, protein 99.6 7.2E-16 2.5E-20 112.7 4.9 83 14-103 13-96 (101)
311 2cpx_A Hypothetical protein FL 99.6 3E-15 1E-19 112.2 8.3 81 108-191 23-107 (115)
312 2cqh_A IGF-II mRNA-binding pro 99.6 3.2E-15 1.1E-19 107.5 8.0 78 108-191 6-85 (93)
313 3egn_A RNA-binding protein 40; 99.6 1.3E-15 4.3E-20 118.9 6.3 82 201-283 43-132 (143)
314 2diu_A KIAA0430 protein; struc 99.6 2.3E-15 8E-20 105.2 7.0 72 204-283 10-86 (96)
315 2hgm_A HNRPF protein, heteroge 99.6 1.3E-15 4.5E-20 115.0 6.2 79 108-188 40-120 (126)
316 1wf1_A RNA-binding protein RAL 99.6 3.4E-15 1.2E-19 110.9 8.2 74 202-281 26-100 (110)
317 1wg1_A KIAA1579 protein, homol 99.6 6.3E-15 2.2E-19 104.8 9.2 75 109-189 4-78 (88)
318 1x4f_A Matrin 3; structural ge 99.6 4.3E-15 1.5E-19 109.4 8.3 83 11-104 18-104 (112)
319 2cpd_A Apobec-1 stimulating pr 99.6 1.8E-14 6.2E-19 104.8 11.6 77 108-191 13-91 (99)
320 1sjr_A Polypyrimidine tract-bi 99.6 3.3E-15 1.1E-19 116.9 8.1 77 204-282 47-125 (164)
321 2xs2_A Deleted in azoospermia- 99.6 1.6E-15 5.6E-20 111.0 6.0 80 202-283 8-88 (102)
322 2lcw_A RNA-binding protein FUS 99.4 1.4E-16 4.7E-21 119.7 0.0 84 109-192 6-98 (116)
323 2e5i_A Heterogeneous nuclear r 99.6 8.8E-15 3E-19 109.9 9.9 75 204-282 26-103 (124)
324 2e5g_A U6 snRNA-specific termi 99.6 6.7E-15 2.3E-19 106.0 8.8 77 202-282 7-83 (94)
325 1x5p_A Negative elongation fac 99.6 1.6E-14 5.5E-19 104.6 10.9 76 201-282 13-88 (97)
326 3q2s_C Cleavage and polyadenyl 99.6 3.2E-15 1.1E-19 125.7 8.0 81 202-282 67-151 (229)
327 3d2w_A TAR DNA-binding protein 99.6 1.2E-14 4.1E-19 103.4 9.8 76 201-283 9-86 (89)
328 2j8a_A Histone-lysine N-methyl 99.6 5.5E-15 1.9E-19 109.3 8.2 79 111-189 3-96 (136)
329 2lcw_A RNA-binding protein FUS 99.4 1.7E-16 5.9E-21 119.2 0.0 83 202-284 6-98 (116)
330 2cq2_A Hypothetical protein LO 99.6 4.3E-15 1.5E-19 109.5 7.5 76 109-189 24-106 (114)
331 3zzy_A Polypyrimidine tract-bi 99.6 1.7E-14 5.8E-19 108.8 10.6 76 111-190 29-107 (130)
332 3egn_A RNA-binding protein 40; 99.6 4E-15 1.4E-19 116.0 7.5 84 108-191 43-132 (143)
333 2e44_A Insulin-like growth fac 99.6 5.3E-15 1.8E-19 107.0 7.5 78 202-281 14-92 (96)
334 1x5p_A Negative elongation fac 99.6 3.2E-14 1.1E-18 103.0 11.5 77 108-191 13-89 (97)
335 2f3j_A RNA and export factor b 99.6 6.2E-15 2.1E-19 118.8 8.4 82 201-282 86-168 (177)
336 2hgm_A HNRPF protein, heteroge 99.6 4.3E-15 1.5E-19 112.1 6.9 81 14-101 38-120 (126)
337 2voo_A Lupus LA protein; RNA-b 99.6 1.2E-14 4.2E-19 118.8 10.2 121 160-282 63-188 (193)
338 2e5g_A U6 snRNA-specific termi 99.6 1.7E-14 5.8E-19 103.9 9.5 76 109-190 7-83 (94)
339 2pe8_A Splicing factor 45; RRM 99.6 2.4E-14 8.1E-19 104.9 10.3 81 201-281 6-94 (105)
340 1sjr_A Polypyrimidine tract-bi 99.6 1.8E-14 6.3E-19 112.7 10.3 79 109-190 45-125 (164)
341 2e44_A Insulin-like growth fac 99.6 1.4E-14 5E-19 104.7 8.7 79 108-189 13-92 (96)
342 3d2w_A TAR DNA-binding protein 99.5 2.1E-14 7.3E-19 102.1 9.3 74 109-190 10-85 (89)
343 2hzc_A Splicing factor U2AF 65 99.5 1.6E-14 5.6E-19 102.4 8.3 71 202-277 5-86 (87)
344 2hzc_A Splicing factor U2AF 65 99.5 2.1E-14 7.2E-19 101.8 8.7 71 109-185 5-86 (87)
345 2pe8_A Splicing factor 45; RRM 99.5 4.4E-14 1.5E-18 103.4 10.5 81 109-189 7-94 (105)
346 2dnl_A Cytoplasmic polyadenyla 99.5 2E-14 6.7E-19 107.4 8.7 76 108-186 6-85 (114)
347 2j8a_A Histone-lysine N-methyl 99.5 1.4E-14 4.6E-19 107.3 7.5 79 204-282 3-97 (136)
348 3beg_B Splicing factor, argini 99.5 1.1E-14 3.9E-19 108.9 6.8 73 203-280 16-93 (115)
349 3beg_B Splicing factor, argini 99.5 1.5E-14 5E-19 108.2 6.8 75 109-189 15-94 (115)
350 2e5i_A Heterogeneous nuclear r 99.5 7.3E-14 2.5E-18 104.9 10.5 75 111-190 26-103 (124)
351 2diu_A KIAA0430 protein; struc 99.5 3.9E-14 1.3E-18 99.0 8.0 72 111-191 10-86 (96)
352 2bz2_A Negative elongation fac 99.5 4.5E-14 1.5E-18 106.4 7.9 77 201-283 37-113 (121)
353 1wf0_A TDP-43, TAR DNA-binding 99.5 2.9E-14 1E-18 101.3 6.2 76 203-283 5-80 (88)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 2.7E-14 9.1E-19 101.5 5.9 77 109-191 4-80 (88)
355 3u1l_A PRE-mRNA-splicing facto 99.5 4.3E-14 1.5E-18 118.1 8.0 81 200-284 131-232 (240)
356 2bz2_A Negative elongation fac 99.5 8.7E-14 3E-18 104.8 8.5 78 108-192 37-114 (121)
357 2dnl_A Cytoplasmic polyadenyla 99.5 8.2E-14 2.8E-18 104.0 8.2 75 202-279 7-86 (114)
358 2dit_A HIV TAT specific factor 99.5 2.3E-13 8E-18 101.2 9.9 80 201-282 13-103 (112)
359 3v4m_A Splicing factor U2AF 65 99.5 2.1E-13 7.1E-18 99.9 8.4 80 202-281 4-97 (105)
360 1jmt_A Splicing factor U2AF 35 99.4 6.9E-14 2.4E-18 102.3 5.2 72 208-279 20-104 (104)
361 3u1l_A PRE-mRNA-splicing facto 99.4 2.6E-13 8.9E-18 113.4 7.9 79 108-191 132-231 (240)
362 1jmt_A Splicing factor U2AF 35 99.4 9E-14 3.1E-18 101.7 4.4 72 115-186 20-103 (104)
363 2dit_A HIV TAT specific factor 99.4 1.3E-12 4.5E-17 97.1 10.7 80 108-190 13-103 (112)
364 3v4m_A Splicing factor U2AF 65 99.4 8.3E-13 2.8E-17 96.6 8.8 81 109-189 4-97 (105)
365 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4.1E-17 97.6 9.5 80 202-281 19-109 (118)
366 3ue2_A Poly(U)-binding-splicin 99.3 3.4E-12 1.2E-16 95.2 8.8 80 110-189 20-109 (118)
367 3s6e_A RNA-binding protein 39; 99.3 6E-12 2.1E-16 93.2 9.4 78 202-281 6-93 (114)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 8.4E-12 2.9E-16 90.1 6.8 65 213-282 27-91 (100)
369 3tht_A Alkylated DNA repair pr 99.2 1.6E-11 5.5E-16 108.1 8.7 76 200-279 15-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.6E-11 1.6E-15 86.2 9.4 66 119-190 26-91 (100)
371 3s6e_A RNA-binding protein 39; 99.2 7.7E-11 2.6E-15 87.2 9.6 79 109-190 6-94 (114)
372 3tht_A Alkylated DNA repair pr 99.2 4.2E-11 1.4E-15 105.5 8.8 75 108-187 16-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 5.7E-10 1.9E-14 77.3 7.6 72 203-281 7-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.0 7.8E-10 2.7E-14 81.8 8.6 79 202-284 17-99 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.9 5.3E-09 1.8E-13 72.4 8.2 73 109-189 6-86 (91)
376 1owx_A Lupus LA protein, SS-B, 98.9 7.1E-09 2.4E-13 76.7 8.0 76 107-187 15-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 6.3E-09 2.2E-13 72.4 5.7 73 201-280 13-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.8 8.6E-09 2.9E-13 86.1 7.6 66 215-280 141-212 (222)
379 3dxb_A Thioredoxin N-terminall 98.7 2.4E-08 8.3E-13 83.3 7.4 67 122-188 141-212 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 6.3E-08 2.1E-12 67.4 7.2 73 14-100 11-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.6 2.9E-07 1E-11 65.2 9.6 75 108-187 19-98 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 7.4E-07 2.5E-11 63.2 8.5 73 203-279 21-98 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 1.7E-06 6E-11 60.8 7.7 87 17-123 7-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.1 2.2E-05 7.4E-10 55.3 8.7 87 110-216 8-99 (104)
385 1wey_A Calcipressin 1; structu 98.0 2E-05 6.7E-10 55.8 7.3 75 203-281 5-84 (104)
386 1uw4_A UPF3X; nonsense mediate 97.8 0.00026 8.9E-09 49.2 9.4 76 204-279 2-86 (91)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00022 7.6E-09 49.6 8.3 67 111-177 2-71 (91)
388 1wey_A Calcipressin 1; structu 97.5 0.00085 2.9E-08 47.4 8.7 74 16-101 4-83 (104)
389 1wwh_A Nucleoporin 35, nucleop 97.5 0.00076 2.6E-08 49.1 8.6 72 204-281 25-97 (119)
390 1whv_A Poly(A)-specific ribonu 97.4 0.00077 2.6E-08 46.8 8.1 54 111-172 17-70 (100)
391 2l08_A Regulator of nonsense t 97.2 0.0014 4.9E-08 45.7 7.2 76 204-279 10-94 (97)
392 3ctr_A Poly(A)-specific ribonu 97.0 0.0014 4.9E-08 45.6 5.5 53 112-172 8-60 (101)
393 3p3d_A Nucleoporin 53; structu 96.9 0.002 6.9E-08 47.5 6.2 74 204-279 8-97 (132)
394 2l08_A Regulator of nonsense t 96.8 0.0014 4.7E-08 45.8 4.5 66 111-176 10-78 (97)
395 1wwh_A Nucleoporin 35, nucleop 96.7 0.01 3.4E-07 43.2 8.7 74 109-189 23-97 (119)
396 1whv_A Poly(A)-specific ribonu 96.4 0.0067 2.3E-07 42.1 5.4 53 21-85 18-70 (100)
397 3ctr_A Poly(A)-specific ribonu 96.3 0.0058 2E-07 42.6 4.7 54 205-264 7-60 (101)
398 3p3d_A Nucleoporin 53; structu 95.7 0.025 8.5E-07 41.7 6.0 76 110-187 7-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.5 0.0076 2.6E-07 54.9 3.4 55 204-262 54-108 (464)
400 3pq1_A Poly(A) RNA polymerase; 95.1 0.011 3.8E-07 53.8 3.3 56 110-170 53-108 (464)
401 3d45_A Poly(A)-specific ribonu 86.1 2.8 9.5E-05 38.8 8.6 55 111-173 441-495 (507)
402 4eyt_A Telomerase associated p 81.9 9.4 0.00032 25.7 7.4 75 202-282 11-92 (129)
403 3d45_A Poly(A)-specific ribonu 79.3 4.5 0.00015 37.4 7.2 53 21-85 442-494 (507)
404 3j21_T 50S ribosomal protein L 50.7 46 0.0016 22.3 5.7 56 113-170 25-82 (86)
405 4e8u_A Putative uncharacterize 49.2 40 0.0014 26.0 5.8 50 112-163 14-74 (172)
406 2g0c_A ATP-dependent RNA helic 48.4 14 0.00046 24.0 2.8 33 64-99 42-74 (76)
407 4e8u_A Putative uncharacterize 41.4 59 0.002 25.0 5.7 48 205-253 14-72 (172)
408 4eyt_A Telomerase associated p 38.3 88 0.003 20.9 9.9 68 110-184 12-86 (129)
409 1vq8_S 50S ribosomal protein L 34.6 60 0.002 21.7 4.3 54 113-168 24-79 (85)
410 3u5e_X 60S ribosomal protein L 27.6 1.3E+02 0.0046 22.2 5.5 56 112-169 80-137 (142)
411 4a17_R RPL23A, 60S ribosomal p 26.5 1.4E+02 0.0047 22.3 5.4 55 113-169 89-145 (150)
412 2jsh_A Appetite-regulating hor 20.8 77 0.0026 15.9 2.1 22 312-333 2-23 (26)
413 3iz5_X 60S ribosomal protein L 20.2 1.4E+02 0.0048 22.3 4.4 55 113-169 91-147 (152)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.1e-46 Score=330.60 Aligned_cols=253 Identities=20% Similarity=0.273 Sum_probs=226.3
Q ss_pred cccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 15 IIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 15 ~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
..++++|||+|||+++|+++|+++|+..++.++.+ +.++|||||+|.++ ++|++|++.+++..+.|++|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~---------~~~~g~afV~f~~~--~~A~~A~~~l~~~~~~g~~i 87 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFV---------DKYKGTAFVTLLNG--EQAEAAINAFHQSRLREREL 87 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE---------ETTTTEEEEEESSH--HHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE---------ecCCCEEEEEeCCH--HHHHHHHHHcCCCeeCCeEE
Confidence 45788999999999999999999995555777766 34678999999999 99999999999999999999
Q ss_pred EEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 95 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
.|.++.. .++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|+|
T Consensus 88 ~v~~~~~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 88 SVQLQPT--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp EEEECCC--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEecCC--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 9999643 3689999999999999999999999999999999987 889999999999999999999999999
Q ss_pred ceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCC-cHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeC
Q psy12549 174 MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDF-NDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYE 251 (336)
Q Consensus 174 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~ 251 (336)
..+.|+.|.|.++.+.... ......++|||+|||..+ ++++|+++|+.||.|..+.+.. .+|.++|+|||+|.
T Consensus 160 ~~~~g~~i~v~~a~~~~~~-----~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~ 234 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQLT-----PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYE 234 (284)
T ss_dssp CEETTEECEEEECCGGGCC-----TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECS
T ss_pred CEeCCcEEEEEECCCCCCC-----cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeC
Confidence 9999999999998765432 122345789999999995 9999999999999999999887 77889999999999
Q ss_pred CHHHHHHHHHHhCCceecCEEEEEeecccchhhHHHHHHH
Q psy12549 252 SPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRR 291 (336)
Q Consensus 252 ~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~ 291 (336)
+.++|.+|+..|||..++|+.|.|.|+.++..........
T Consensus 235 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~ 274 (284)
T 3smz_A 235 TAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAAL 274 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhh
Confidence 9999999999999999999999999999887765554443
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.7e-46 Score=330.71 Aligned_cols=249 Identities=14% Similarity=0.181 Sum_probs=212.8
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
...+.++|||+|||+++|+++|+++| .+|.+.++++.++.+ .++|||||+|.++ ++|++|++ +++..+.|+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~g~afV~f~~~--~~A~~A~~-~~~~~~~g~ 108 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-----KNFRFARIEFARY--DGALAAIT-KTHKVVGQN 108 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-----SSSEEEEEEESSH--HHHHHHHT-TTTCEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----CCcEEEEEEECCH--HHHHHHHH-hCCcEeCCc
Confidence 45678999999999999999999999 777888999998773 3689999999999 99999996 999999999
Q ss_pred eeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 93 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 93 ~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
+|.|.++. .++|||+|||..+++++|+++|+.|| .|..+.++.++.|.++|||||+|.+.++|.+|+..|
T Consensus 109 ~i~v~~~~---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 109 EIIVSHLT---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp ECEEEECC---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHH
T ss_pred EEEEEECC---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 99999863 47899999999999999999999999 999999999888889999999999999999999999
Q ss_pred CCceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCC-CcHHHHHHhhccCCceeEEEEeC-CC--CccceEEE
Q psy12549 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGED-FNDEKLKEMFEPYGTITSYRVMN-ND--GKSRGFGF 247 (336)
Q Consensus 172 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~l~~~f~~~g~i~~~~i~~-~~--~~~~g~af 247 (336)
+|..+.|+.|.|.++.+....... .......++|||+|||.. +++++|+++|+.||.|..+.++. .. |.++|+||
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~~~~-~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~af 258 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKSKRT-DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAF 258 (292)
T ss_dssp TTCEETTEECEEEECCCC----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEE
T ss_pred CCCEeCCcEEEEEECCCCcccccc-cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEE
Confidence 999999999999998876543322 123334588999999999 99999999999999999999988 33 88999999
Q ss_pred EEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 248 VAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 248 V~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
|+|.+.++|.+|+ .|||..++|+.|.|.|+.++
T Consensus 259 V~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 259 MVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999999 99999999999999999876
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1e-36 Score=267.19 Aligned_cols=192 Identities=20% Similarity=0.329 Sum_probs=173.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
.++|||+|||.++|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|.+.+..+
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~- 94 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT- 94 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC-
Confidence 47899999999999999999999999 998888 34688999999999999999999999999999999987542
Q ss_pred hhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 190 KEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKE 267 (336)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~ 267 (336)
.++|||+|||..+++++|+++|+.||.|..+.++. .+|.++|+|||+|.+.++|.+|+..++|..
T Consensus 95 -------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 95 -------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp -------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred -------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 27899999999999999999999999999998876 578899999999999999999999999999
Q ss_pred ecCEEEEEeecccchhhHHHHHHHHHHHHHHhhcCCCCceEEEecCCCCC-CHHHHHHhcCCCCCeeecC
Q psy12549 268 VDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSI-DDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 268 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~G~V~~vk 336 (336)
+.|+.|.|.++.++... ....++++|+|+|||..+ ++++|+++|++||.|.+|+
T Consensus 162 ~~g~~i~v~~a~~~~~~---------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~ 216 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQLT---------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQ 216 (284)
T ss_dssp ETTEECEEEECCGGGCC---------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEE
T ss_pred eCCcEEEEEECCCCCCC---------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEE
Confidence 99999999999875322 123466899999999995 9999999999999998764
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.4e-37 Score=270.61 Aligned_cols=201 Identities=20% Similarity=0.380 Sum_probs=172.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++|+++|+++|+.||.|..|.++.++.+ ++|||||+|.+.++|.+|++ +++..+.|+.|.+.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC
Confidence 44689999999999999999999999999999999998765 58999999999999999996 99999999999998752
Q ss_pred CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCC-ceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCC
Q psy12549 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG-TITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNG 265 (336)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g-~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g 265 (336)
.++|||+|||..+++++|+++|+.|| .|..+.++. ..|.++|+|||+|.+.++|.+|+..|+|
T Consensus 117 ---------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 117 ---------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp ---------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred ---------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 37899999999999999999999999 999999987 5577899999999999999999999999
Q ss_pred ceecCEEEEEeecccchhhHHHHHHHHHHHHHHhhcCCCCceEEEecCCCC-CCHHHHHHhcCCCCCeeecC
Q psy12549 266 KEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDS-IDDERLRKEFTPFGTITSAK 336 (336)
Q Consensus 266 ~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~V~~vk 336 (336)
..+.|+.|.|.++.+....... .....++++|+|+|||.. +++++|+++|++||.|.+|+
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~ 242 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKIN 242 (292)
T ss_dssp CEETTEECEEEECCCC--------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEE
T ss_pred CEeCCcEEEEEECCCCcccccc-----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEE
Confidence 9999999999999876433221 123456789999999999 99999999999999999874
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5e-35 Score=245.39 Aligned_cols=171 Identities=27% Similarity=0.534 Sum_probs=155.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++|+++|+++|++||.|.+|++++++ +|.++|||||+|.+.++|.+|++.+++..+.|+.+.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 35789999999999999999999999999999999987 78999999999999999999999999999999999999887
Q ss_pred CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKE 267 (336)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~ 267 (336)
........ ...+|||+|||..+++++|+++|+.||.|..++++...+.++|||||+|.+.++|.+|++.|||..
T Consensus 94 ~~~~~~~~------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 94 RDPSLRKS------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp CCTHHHHH------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cccccccc------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 66543322 236799999999999999999999999999999988667789999999999999999999999999
Q ss_pred ecCEEEEEeecccchhhH
Q psy12549 268 VDGKILYVGRAQKKAERT 285 (336)
Q Consensus 268 ~~g~~l~v~~~~~~~~~~ 285 (336)
++|+.|.|.++.++.+..
T Consensus 168 ~~g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 168 LNDRKVFVGRFKSRKERE 185 (213)
T ss_dssp ETTEECEEEECCCHHHHH
T ss_pred ECCEEEEEEEcCCCcccc
Confidence 999999999998875443
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3e-35 Score=246.76 Aligned_cols=180 Identities=58% Similarity=0.877 Sum_probs=158.2
Q ss_pred CCCCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccc
Q psy12549 10 SEEGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDA 88 (336)
Q Consensus 10 ~~~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~ 88 (336)
+|..-..|.++|||+|||+++||++|+++| .+|.+.++++++++ .+|+++|||||+|.+. ++|++|++.+++..
T Consensus 7 ~p~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~~G~afV~F~~~--~~A~~Ai~~~~~~~ 81 (213)
T 4f02_A 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM---ITRRSLGYAYVNFQQP--ADAERALDTMNFDV 81 (213)
T ss_dssp --------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSH--HHHHHHHHHHTTCE
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeccc---CCCCccccccceeCCH--HHHHHHHHHhhhhh
Confidence 344445788999999999999999999999 77788999999987 4789999999999999 99999999999999
Q ss_pred cCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy12549 89 LKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSI 168 (336)
Q Consensus 89 ~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~ 168 (336)
+.|+.+++.++............+|||+|||.++++++|+++|+.||.|..+.++.++.+ ++|||||+|.+.++|.+|+
T Consensus 82 ~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 82 IKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp ETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHH
T ss_pred cCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHH
Confidence 999999999987766655556689999999999999999999999999999999998643 7999999999999999999
Q ss_pred HHhCCceeCCeEEEEeeccCchhhhHh
Q psy12549 169 EKVNGMLLNSKIVFVGKFIPRKEREKE 195 (336)
Q Consensus 169 ~~l~~~~~~~~~i~v~~~~~~~~~~~~ 195 (336)
+.|||..+.|+.|.|.++.++..+...
T Consensus 161 ~~lng~~~~g~~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKSRKEREAE 187 (213)
T ss_dssp HHHTTCEETTEECEEEECCCHHHHHHH
T ss_pred HHhCCCEECCEEEEEEEcCCCcccchh
Confidence 999999999999999999887665443
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-34 Score=228.86 Aligned_cols=164 Identities=26% Similarity=0.484 Sum_probs=150.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCch
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
++|||+|||.++++++|+++|+.||.|.++.++.++.+.++|||||+|.+.++|.+|+..+++..+.|+.+.+.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999999999987654
Q ss_pred hhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 191 EREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEV 268 (336)
Q Consensus 191 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~ 268 (336)
. ......++|+|+|||..+++++|+++|+.||.|..+.+.. .+|.++|+|||+|.+.++|.+|+..|||..+
T Consensus 81 ~------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 81 Q------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp C------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred C------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 3 2233447899999999999999999999999999999986 6788999999999999999999999999999
Q ss_pred cCEEEEEeeccc
Q psy12549 269 DGKILYVGRAQK 280 (336)
Q Consensus 269 ~g~~l~v~~~~~ 280 (336)
+|+.|+|.|+.+
T Consensus 155 ~g~~i~v~~a~~ 166 (166)
T 3md3_A 155 NGRPLRINWAAK 166 (166)
T ss_dssp TTEECEEEESCC
T ss_pred CCcEEEEEecCC
Confidence 999999999863
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=224.85 Aligned_cols=163 Identities=22% Similarity=0.347 Sum_probs=152.6
Q ss_pred ceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEE
Q psy12549 19 HNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIM 97 (336)
Q Consensus 19 ~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~ 97 (336)
|+|||+|||+++++++|+++| .+|.+.++++.+++. |.++|||||+|.+. ++|++|+..+++..+.|+++.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~--~~a~~A~~~l~~~~~~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQS--HDANIALQTLNGKQIENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSH--HHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCH--HHHHHHHHHcCCCccCCCeeEEE
Confidence 689999999999999999999 777888999998873 77999999999999 99999999999999999999999
Q ss_pred eccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 98 WSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLL 176 (336)
Q Consensus 98 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~ 176 (336)
++...........++|||+|||..+++++|+++|+.||.|..+.+..++ +|.++|+|||+|.+.++|.+|+..|||..+
T Consensus 75 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 75 WAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp ECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 9988777777778899999999999999999999999999999999985 788999999999999999999999999999
Q ss_pred CCeEEEEeecc
Q psy12549 177 NSKIVFVGKFI 187 (336)
Q Consensus 177 ~~~~i~v~~~~ 187 (336)
.|+.|.|.++.
T Consensus 155 ~g~~i~v~~a~ 165 (166)
T 3md3_A 155 NGRPLRINWAA 165 (166)
T ss_dssp TTEECEEEESC
T ss_pred CCcEEEEEecC
Confidence 99999999875
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.5e-33 Score=229.22 Aligned_cols=175 Identities=23% Similarity=0.486 Sum_probs=147.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++|+++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|++. ++..+.|+.|.+.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 456899999999999999999999999999999999997 688999999999999999999985 999999999999998
Q ss_pred cCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhC
Q psy12549 187 IPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWN 264 (336)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~ 264 (336)
.+....... ......++|||+|||..+++++|+++|+.||.|..+.+.. .+|.++|+|||+|.+.++|.+|+.. +
T Consensus 90 ~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 90 VSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp CC-------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cCccccccc--ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 766443221 1223347899999999999999999999999999999987 4788999999999999999999986 8
Q ss_pred CceecCEEEEEeecccchhhHH
Q psy12549 265 GKEVDGKILYVGRAQKKAERTQ 286 (336)
Q Consensus 265 g~~~~g~~l~v~~~~~~~~~~~ 286 (336)
|..++|+.|.|.++.++.+...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp CCEETTEECEEEECC-------
T ss_pred CcEECCEEEEEEecCChhHhcc
Confidence 9999999999999998865543
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.6e-33 Score=225.32 Aligned_cols=161 Identities=30% Similarity=0.540 Sum_probs=149.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|++.+++..+.|+.|.+.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 5789999999999999999999999999999999986 788999999999999999999999999999999999999876
Q ss_pred chhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 189 RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
.... ...++|+|+|||..+++++|+++|++||.|..+.+.. .++.++|+|||+|.+.++|.+|+..|||.
T Consensus 83 ~~~~--------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 83 GGES--------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp CSST--------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred Cccc--------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 5432 2347899999999999999999999999999999887 47888999999999999999999999999
Q ss_pred eecC--EEEEEeec
Q psy12549 267 EVDG--KILYVGRA 278 (336)
Q Consensus 267 ~~~g--~~l~v~~~ 278 (336)
.+.| ++|+|.||
T Consensus 155 ~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 155 IPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred EecCCCeEEEEEeC
Confidence 9988 99999886
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.5e-33 Score=222.81 Aligned_cols=161 Identities=29% Similarity=0.549 Sum_probs=148.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|++..+.|+.|.+.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999998 899999999999999999999999999999999999999876
Q ss_pred chhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 189 RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
.... ...++|+|+|||..+++++|+++|+.||.|..+.+.. .+|.++|+|||+|.+.++|.+|++.|||.
T Consensus 82 ~~~~--------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 82 SSAS--------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCGG--------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred Cccc--------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 5432 2237899999999999999999999999999999887 47888999999999999999999999999
Q ss_pred eecCEE--EEEeec
Q psy12549 267 EVDGKI--LYVGRA 278 (336)
Q Consensus 267 ~~~g~~--l~v~~~ 278 (336)
.+.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 888875
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.7e-32 Score=230.56 Aligned_cols=173 Identities=28% Similarity=0.552 Sum_probs=153.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++|+++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4689999999999999999999999999999999987 788999999999999999999999999999999999998876
Q ss_pred chhhhHh---hhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHh
Q psy12549 189 RKEREKE---LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263 (336)
Q Consensus 189 ~~~~~~~---~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l 263 (336)
....... ........++|||+|||.++++++|+++|+.||.|..+.+.. .+|.++|+|||+|.+.++|.+|+..|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 6543221 112234458999999999999999999999999999999987 57889999999999999999999999
Q ss_pred CCceecCEEEEEeecccch
Q psy12549 264 NGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 264 ~g~~~~g~~l~v~~~~~~~ 282 (336)
||..++|+.|+|.++.++.
T Consensus 188 ~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TTCBCSSSBCEEEECSSCS
T ss_pred cCCEeCCcEEEEEEecCCC
Confidence 9999999999999998764
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=7.3e-33 Score=223.36 Aligned_cols=161 Identities=25% Similarity=0.561 Sum_probs=148.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++|+++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|+.. +..+.|+.+.+.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 5789999999999999999999999999999999986 789999999999999999999994 6789999999998876
Q ss_pred chhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 189 RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
..... ..++|||+|||.++++++|+++|+.||.|..+.+.. .+|.++|+|||+|.+.++|.+|++ ++|.
T Consensus 81 ~~~~~--------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 151 (167)
T 2cjk_A 81 RDEQD--------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI 151 (167)
T ss_dssp HHHHH--------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE
T ss_pred hhhcc--------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE
Confidence 54432 236899999999999999999999999999999987 468899999999999999999998 8999
Q ss_pred eecCEEEEEeecccc
Q psy12549 267 EVDGKILYVGRAQKK 281 (336)
Q Consensus 267 ~~~g~~l~v~~~~~~ 281 (336)
.++|+.|.|.++.++
T Consensus 152 ~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 152 DFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSSSSCEEEEECCCC
T ss_pred EeCCeEEEEeecCCC
Confidence 999999999999876
No 14
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.6e-32 Score=220.29 Aligned_cols=163 Identities=18% Similarity=0.331 Sum_probs=149.8
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
|+++|+|+|||+++++++|+++| .+|.+.++++.+++ .+|.++|||||+|.++ ++|++|++.+++..+.|++|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY---KTGYSYGYAFVDFTSE--MDSQRAIKVLNGITVRNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSH--HHHHHHHHHHTTCEETTEECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC---CCCccceEEEEEECCH--HHHHHHHHhcCCCEeCCcEEE
Confidence 68899999999999999999999 66788899998876 3688999999999999 999999999999999999999
Q ss_pred EEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 96 IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGM 174 (336)
Q Consensus 96 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~ 174 (336)
|.|+.+... ....++|+|+|||..+++++|+++|++||.|..+.+++++ +|.++|+|||+|.+.++|.+|+..|||.
T Consensus 77 v~~~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 77 VSYARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp EEECCCCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEecCCCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 999876543 3456899999999999999999999999999999999997 8889999999999999999999999999
Q ss_pred eeCC--eEEEEeec
Q psy12549 175 LLNS--KIVFVGKF 186 (336)
Q Consensus 175 ~~~~--~~i~v~~~ 186 (336)
.+.| ++|.|.++
T Consensus 155 ~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 155 IPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred EecCCCeEEEEEeC
Confidence 9977 99998764
No 15
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.3e-32 Score=218.67 Aligned_cols=163 Identities=24% Similarity=0.371 Sum_probs=148.5
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
|+++|||+|||+++++++|+++| .+|.+.++++.+++ .+|.++|||||+|.++ ++|++|++.+++..+.|++|.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~---~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYIDP--KDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCCEEEEEEEEESSH--HHHHHHHHHHTTCEETTEECE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCcceeEEEEEECCH--HHHHHHHHHcCCCccCCceEE
Confidence 57899999999999999999999 77788899999877 4689999999999999 999999999999999999999
Q ss_pred EEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 96 IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGM 174 (336)
Q Consensus 96 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~ 174 (336)
|.++.+... ....++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|+|||+|.+.++|.+|++.|||.
T Consensus 76 v~~~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 76 VSYARPSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp EEECCCCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEecCCCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 999876543 3345789999999999999999999999999999999987 7889999999999999999999999999
Q ss_pred eeCCeE--EEEeec
Q psy12549 175 LLNSKI--VFVGKF 186 (336)
Q Consensus 175 ~~~~~~--i~v~~~ 186 (336)
.+.|+. |.|.|+
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 777664
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5e-32 Score=220.03 Aligned_cols=164 Identities=22% Similarity=0.378 Sum_probs=145.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQG---NSKGYGFVHFETEEAANKSIEKVNGMLLN---SKIVF 182 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~~g~afV~F~~~~~a~~a~~~l~~~~~~---~~~i~ 182 (336)
+.++|||+|||.++|+++|+++|++||.|.++.+++++.+ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4578999999999999999999999999999999999844 79999999999999999999999998765 67777
Q ss_pred EeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHH
Q psy12549 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQ 261 (336)
Q Consensus 183 v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~ 261 (336)
+.++.+... .....++|||+|||..+++++|+++|+.||.|.++.+.. .+|.++|+|||+|.+.++|.+|++
T Consensus 82 ~~~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 82 MKPADSEKN-------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp EEECGGGCC-------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred Ecccccccc-------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 776554332 122347899999999999999999999999999999987 678889999999999999999999
Q ss_pred HhCCceec---CEEEEEeecc
Q psy12549 262 AWNGKEVD---GKILYVGRAQ 279 (336)
Q Consensus 262 ~l~g~~~~---g~~l~v~~~~ 279 (336)
.|||..+. |++|+|.||.
T Consensus 155 ~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEECC
T ss_pred HhcCCcccCCCCCCeEEEecC
Confidence 99998876 4999999873
No 17
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1e-31 Score=222.42 Aligned_cols=173 Identities=16% Similarity=0.212 Sum_probs=148.5
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
...+.++|||+|||+++|+++|+++| .+|.+.++++++++ .+|.++|||||+|.+. ++|++|++. ++..+.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~--~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP---NTKRSRGFGFVTYATV--EEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSH--HHHHHHHHT-CSCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcC---CCCCccceEEEEeCCH--HHHHHHHhc-CCCEECCE
Confidence 44678899999999999999999999 77788899999887 3688999999999999 999999985 89999999
Q ss_pred eeEEEeccCCCCcC----CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHH
Q psy12549 93 PIRIMWSQRDPSLR----KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167 (336)
Q Consensus 93 ~i~v~~~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a 167 (336)
.|.|.++....... ....++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|
T Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 99999976643322 2234799999999999999999999999999999999997 788999999999999999999
Q ss_pred HHHhCCceeCCeEEEEeeccCchhhh
Q psy12549 168 IEKVNGMLLNSKIVFVGKFIPRKERE 193 (336)
Q Consensus 168 ~~~l~~~~~~~~~i~v~~~~~~~~~~ 193 (336)
+.. ++..+.|+.|.|.++.++....
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHC-SCCEETTEECEEEECC------
T ss_pred HHh-CCcEECCEEEEEEecCChhHhc
Confidence 996 8999999999999998876543
No 18
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=3e-32 Score=221.48 Aligned_cols=165 Identities=25% Similarity=0.382 Sum_probs=145.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
....++|||+|||.++++++|+++|+.||.+..+.+....+|.++|||||+|.+.++|.+|++ |++..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 345689999999999999999999999998766333333467889999999999999999995 9999999999999998
Q ss_pred cCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 187 IPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
.+.... .....++|||+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..|||.
T Consensus 89 ~~~~~~------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 89 KGRDSK------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp CCSSCS------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred CCcccc------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 765432 22344789999999999999999999999998777 677888999999999999999999999999
Q ss_pred eecCEEEEEeecccc
Q psy12549 267 EVDGKILYVGRAQKK 281 (336)
Q Consensus 267 ~~~g~~l~v~~~~~~ 281 (336)
.++|+.|+|.|+.++
T Consensus 160 ~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 160 EIDGRSVSLYYTGEK 174 (175)
T ss_dssp EETTEEEEEEECSSC
T ss_pred EECCeEEEEEecCCC
Confidence 999999999999876
No 19
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.2e-31 Score=225.38 Aligned_cols=173 Identities=21% Similarity=0.359 Sum_probs=153.0
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
...+.++|||+|||.++++++|+++| .+|.+.++++++++ .+|.++|||||+|.+. ++|.+|++.+++..+.|+
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~--~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS---VTMKHKGFAFVEYEVP--EAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC----CC-CCCSEEEEEESSH--HHHHHHHHHHSSCCCC-C
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC---CCCccCceEEEEeCCH--HHHHHHHHHccCCeeCCe
Confidence 34567899999999999999999999 77788899999887 3688999999999999 999999999999999999
Q ss_pred eeEEEeccCCCCc---------CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHH
Q psy12549 93 PIRIMWSQRDPSL---------RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEE 162 (336)
Q Consensus 93 ~i~v~~~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~ 162 (336)
.|.|.++...... .....++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.+
T Consensus 99 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 99 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred eEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 9999887654321 12345799999999999999999999999999999999996 7889999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 163 AANKSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 163 ~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
+|.+|+..||+..+.|+.|.|.++.+...
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999999999999999887643
No 20
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=7.4e-32 Score=219.18 Aligned_cols=166 Identities=18% Similarity=0.180 Sum_probs=145.5
Q ss_pred CccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC
Q psy12549 13 GIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG 91 (336)
Q Consensus 13 ~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g 91 (336)
....+.++|||+|||.++++++|+++| .++.+.. .++.+. .+|.++|||||+|.++ ++|++|++ +++..+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~---~~~~~~g~afV~f~~~--~~a~~A~~-l~g~~~~g 80 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV---RTGTNRKFGYVDFESA--EDLEKALE-LTGLKVFG 80 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE---EEETTTTEEEEEESSH--HHHHHHHH-GGGEEETT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEEC---CCCccccEEEEEECCH--HHHHHHHh-cCCCEeCC
Confidence 455788999999999999999999999 5555444 222322 4688999999999999 99999995 99999999
Q ss_pred eeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy12549 92 RPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171 (336)
Q Consensus 92 ~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l 171 (336)
++|.|.++...........++|||+|||.++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|
T Consensus 81 ~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 81 NEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp EEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred eEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 9999999987766666677899999999999999999999999988765 557889999999999999999999999
Q ss_pred CCceeCCeEEEEeeccCc
Q psy12549 172 NGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 172 ~~~~~~~~~i~v~~~~~~ 189 (336)
||..+.|+.|.|.++.++
T Consensus 157 ~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TEEEETTEEEEEEECSSC
T ss_pred CCCEECCeEEEEEecCCC
Confidence 999999999999998765
No 21
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.6e-31 Score=214.96 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=146.0
Q ss_pred cCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCccccc--CCceEEEEEeCCcchhhHHHHHhhcCccccC---
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQ--LGSGAILVQLGQPYMLDTERALDTMNFDALK--- 90 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g--~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~--- 90 (336)
..++|||+|||+++++++|+++| .+|.+.++++++++. +| .++|||||+|.++ ++|++|++.+++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~~~~~~~g~afV~f~~~--~~A~~A~~~l~~~~~~~~~ 76 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS---QNPPQSKGCCFVTFYTR--KAALEAQNALHNMKVLPGM 76 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECS---SSSCEEEEEEEEEESSH--HHHHHHHHHHTTTCCCTTC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC---CCCCCcceEEEEEECCH--HHHHHHHHHhcCcEEccCC
Confidence 46789999999999999999999 777888999998873 34 7999999999999 9999999999998775
Q ss_pred CeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy12549 91 GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 91 g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~ 170 (336)
++++.+.++..... .....++|||+|||.++++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|+..
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 77 HHPIQMKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp SSCCEEEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred ccceEEcccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 68888888665433 23356799999999999999999999999999999999998899999999999999999999999
Q ss_pred hCCceeC---CeEEEEeec
Q psy12549 171 VNGMLLN---SKIVFVGKF 186 (336)
Q Consensus 171 l~~~~~~---~~~i~v~~~ 186 (336)
|||..+. +++|.|.++
T Consensus 156 l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HTTSCCCTTCSSCCEEEEC
T ss_pred hcCCcccCCCCCCeEEEec
Confidence 9998775 499999886
No 22
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=7.4e-31 Score=212.58 Aligned_cols=156 Identities=21% Similarity=0.487 Sum_probs=140.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAF----G-------SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
.++|||+|||.++|+++|+++|+.| | .|..+.+.. ++|||||+|.++++|.+|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 4789999999999999999999999 6 677777654 4789999999999999999 799999999
Q ss_pred eEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHH
Q psy12549 179 KIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFA 256 (336)
Q Consensus 179 ~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a 256 (336)
+.|.+.++.+.... ...++|+|+|||..+++++|+++|++||.|..+.+.. .+|.++|+|||+|.+.++|
T Consensus 78 ~~i~v~~~~~~~~~--------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 78 QSLKIRRPHDYQPL--------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp EECEEECCSSCCCC--------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred ceeeecCCcccCCC--------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 99999887654321 2247899999999999999999999999999999987 4888999999999999999
Q ss_pred HHHHHHhCCceecCEEEEEeecc
Q psy12549 257 EKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 257 ~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
.+|++.|||..++|+.|.|.+|.
T Consensus 150 ~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 150 DQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999874
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=5e-32 Score=218.43 Aligned_cols=164 Identities=17% Similarity=0.297 Sum_probs=147.6
Q ss_pred ccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI 94 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i 94 (336)
.+.++|||+|||+++|+++|+++| .+|.+.++++.+++ .+|.++|||||+|.+. ++|++|++. +..+.|+.|
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~--~~a~~A~~~--~~~~~g~~i 73 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP---ATGRSRGFGFLSFEKP--SSVDEVVKT--QHILDGKVI 73 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCT---TTSSCCSCEEEEESST--HHHHHHHHS--CCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECC---CCCCccceEEEEEccH--HHHHHHHhc--ccccCCeEc
Confidence 367899999999999999999999 77788899999887 3789999999999999 999999994 568899999
Q ss_pred EEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 95 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
.+.++..... ....++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++ +++
T Consensus 74 ~v~~~~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 74 DPKRAIPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCEECCCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccccccchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 9988755432 2235689999999999999999999999999999999986 78999999999999999999998 899
Q ss_pred ceeCCeEEEEeeccCc
Q psy12549 174 MLLNSKIVFVGKFIPR 189 (336)
Q Consensus 174 ~~~~~~~i~v~~~~~~ 189 (336)
..+.|+.|.|.++.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999998775
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.1e-30 Score=216.78 Aligned_cols=166 Identities=13% Similarity=0.176 Sum_probs=140.7
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLD-KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+||| ..+++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 89999999999999999999999875 47899999999999999999999999999999999875
Q ss_pred Cchhhh-----------------------------HhhhccccccceEEEcCCCCCCcHHHHHHhhccCCce--eEEEEe
Q psy12549 188 PRKERE-----------------------------KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI--TSYRVM 236 (336)
Q Consensus 188 ~~~~~~-----------------------------~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i--~~~~i~ 236 (336)
...... ........+.++|||+|||.++++++|+++|++||.| ..+++.
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 321100 0000011334689999999999999999999999999 899998
Q ss_pred CCCCccceEEEEEeCCHHHHHHHHHHhCCceecCE----EEEEeec
Q psy12549 237 NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK----ILYVGRA 278 (336)
Q Consensus 237 ~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~----~l~v~~~ 278 (336)
...+..+|+|||+|.+.++|.+|+..|||..+.|+ ++.|.++
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 86566679999999999999999999999999885 5666654
No 25
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2e-30 Score=210.09 Aligned_cols=157 Identities=17% Similarity=0.306 Sum_probs=139.5
Q ss_pred ccCceeeeecCchhhhhhhHHhhh-ccc-----------CCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhh
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLS-SLI-----------DGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDT 83 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f-~~~-----------~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~ 83 (336)
++.++|||+|||+++|+++|+++| .++ .+.++++ +.++|||||+|.++ ++|++|+ .
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---------~~~~g~afV~f~~~--~~A~~A~-~ 69 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSV--DETTQAM-A 69 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---------ETTTTEEEEEESSH--HHHHHHG-G
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---------cCCCCEEEEEeCCH--HHHHHHH-H
Confidence 578999999999999999999999 442 2233333 45679999999999 9999999 7
Q ss_pred cCccccCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHH
Q psy12549 84 MNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEE 162 (336)
Q Consensus 84 ~~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~ 162 (336)
+++..+.|+++.|.++..... ....++|||+|||.++++++|+++|++||.|..+.+..++ +|.++|+|||+|.+.+
T Consensus 70 ~~~~~~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 70 FDGIIFQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp GTTCEETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred hCCcEecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 999999999999998765432 3446889999999999999999999999999999999996 8899999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEeec
Q psy12549 163 AANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 163 ~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
+|.+|++.|||..+.|+.|.|.++
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999886
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.8e-30 Score=214.01 Aligned_cols=168 Identities=20% Similarity=0.437 Sum_probs=144.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAF----G-------SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
.++|||+|||.++++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|++..+.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 5789999999999999999999999 5 56666554 45899999999999999999 799999999
Q ss_pred eEEEEeeccCchhhhHh------------hhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccce
Q psy12549 179 KIVFVGKFIPRKEREKE------------LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRG 244 (336)
Q Consensus 179 ~~i~v~~~~~~~~~~~~------------~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g 244 (336)
+.|.|.++.+....... ........++|||+|||..+++++|+++|+.||.|..+.+.. .+|.++|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999988765321110 011123458999999999999999999999999999999987 4888999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 245 ~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
+|||+|.+.++|.+|++.|||..++|+.|.|.++.++..
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999987643
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=9.6e-30 Score=210.82 Aligned_cols=169 Identities=15% Similarity=0.246 Sum_probs=141.1
Q ss_pred ccCceeeeecCchhhhhhhHHhhh-cccCCceEE-----EeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 16 IPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVK-----YDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~-----~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
...++|||+|||+++++++|+++| .+|.+..+. .+.+ ..++.++|||||+|.++ ++|++|+ .+++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~---~~~~~~~g~afV~F~~~--~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA---VQINQDKNFAFLEFRSV--DETTQAM-AFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEE---EEEETTTTEEEEEESCS--HHHHHHG-GGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEE---eEecCCCCEEEEEeCCH--HHHHHHH-HhcCCEE
Confidence 457899999999999999999999 443221110 0000 12356789999999999 9999999 6999999
Q ss_pred CCeeeEEEeccCCCCc------------------CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCc
Q psy12549 90 KGRPIRIMWSQRDPSL------------------RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNS 150 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~ 150 (336)
.|++|.|.++...... .....++|||+|||..+++++|+++|+.||.|..+.+..++ +|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999987654211 11345899999999999999999999999999999999997 8889
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCch
Q psy12549 151 KGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 151 ~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
+|||||+|.+.++|.+|+..|||..+.|+.|.|.++.++.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999988764
No 28
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.8e-29 Score=213.86 Aligned_cols=170 Identities=16% Similarity=0.289 Sum_probs=146.6
Q ss_pred cCCCCCceEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 105 LRKSGVGNVFIKNLDK-SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 105 ~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
......++|||+|||. ++++++|+++|+.||.|..+.++.++ +|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3345668999999999 99999999999999999999999875 679999999999999999999999999999999
Q ss_pred eeccCchhhhH---------------------------hhhccccccceEEEcCCCCCCcHHHHHHhhccCC-ceeEEEE
Q psy12549 184 GKFIPRKEREK---------------------------ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG-TITSYRV 235 (336)
Q Consensus 184 ~~~~~~~~~~~---------------------------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g-~i~~~~i 235 (336)
.++.+...... .......+.++|||+|||..+++++|+++|+.|| .|..+.+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 98875421000 0001123357899999999999999999999999 9999999
Q ss_pred eCCCCccceEEEEEeCCHHHHHHHHHHhCCceec-CEEEEEeecccc
Q psy12549 236 MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD-GKILYVGRAQKK 281 (336)
Q Consensus 236 ~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~~~ 281 (336)
... ++|+|||+|.+.++|.+|+..|+|..+. |+.|+|.|+.++
T Consensus 185 ~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 652 3789999999999999999999999999 999999999864
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=4.8e-29 Score=218.14 Aligned_cols=167 Identities=19% Similarity=0.302 Sum_probs=144.6
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMY----DTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
...++|||+|||.++++++|+ ++|+.||.|..|.+.+ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 446899999999999999966 8999999999999886 6778999999999999999999999999999999999
Q ss_pred eeccCchhhhHh--------------------------------------------------------------------
Q psy12549 184 GKFIPRKEREKE-------------------------------------------------------------------- 195 (336)
Q Consensus 184 ~~~~~~~~~~~~-------------------------------------------------------------------- 195 (336)
.++.........
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654421000
Q ss_pred -----------------------------------hhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCC
Q psy12549 196 -----------------------------------LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG 240 (336)
Q Consensus 196 -----------------------------------~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~ 240 (336)
........++|||+|||..+++++|+++|+.||.|.++.+....
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 00111234779999999999999999999999999999998531
Q ss_pred ccceEEEEEeCCHHHHHHHHHHhCCceec-CEEEEEeecc
Q psy12549 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVD-GKILYVGRAQ 279 (336)
Q Consensus 241 ~~~g~afV~F~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~ 279 (336)
+|+|||+|.+.++|.+|+..|||..+. |+.|+|.|++
T Consensus 244 --~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 --HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred --CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999986
No 30
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.6e-29 Score=218.42 Aligned_cols=156 Identities=19% Similarity=0.352 Sum_probs=142.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++|+++|+++|+.||.|..+.+.+ ++|||||+|.+.++|.+|+..++|..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 4557999999999999999999999999999999965 37899999999999999999999999999999999986
Q ss_pred CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGK 266 (336)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~ 266 (336)
+. ++|||+|||..+++++|+++|+.||.|..+.++. .+|.++|+|||+|.+.++|.+|+..||+.
T Consensus 95 ~~--------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 95 HG--------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp CS--------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred cC--------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 42 6899999999999999999999999999999887 78889999999999999999999999554
Q ss_pred -eec---CEEEEEeecccch
Q psy12549 267 -EVD---GKILYVGRAQKKA 282 (336)
Q Consensus 267 -~~~---g~~l~v~~~~~~~ 282 (336)
.+. |++|.|.++.+..
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp CEESSSSCCBCEEEECCCEE
T ss_pred eEEecCCCceEEEeeccccC
Confidence 444 8999999987653
No 31
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=5.6e-30 Score=212.30 Aligned_cols=166 Identities=16% Similarity=0.288 Sum_probs=144.3
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDK-SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
+.++|||+|||. ++++++|+++|+.||.|..+.++.++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 357899999999 99999999999999999999999875 6799999999999999999999999999999999887
Q ss_pred CchhhhHh---------------------------hhccccccceEEEcCCCCCCcHHHHHHhhccCC-ceeEEEEeCCC
Q psy12549 188 PRKEREKE---------------------------LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG-TITSYRVMNND 239 (336)
Q Consensus 188 ~~~~~~~~---------------------------~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g-~i~~~~i~~~~ 239 (336)
+....... ......+.++|+|+|||..+++++|+++|+.|| .|..+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 54211000 001113357899999999999999999999999 9999999763
Q ss_pred CccceEEEEEeCCHHHHHHHHHHhCCceec-CEEEEEeecccc
Q psy12549 240 GKSRGFGFVAYESPEFAEKAVQAWNGKEVD-GKILYVGRAQKK 281 (336)
Q Consensus 240 ~~~~g~afV~F~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~~~ 281 (336)
.+|+|||+|.+.++|.+|+..|||..+. |+.|+|.|+.++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2789999999999999999999999999 999999998764
No 32
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1e-28 Score=216.09 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=143.4
Q ss_pred ccccCceeeeecCchhhhhhhHH----hhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccc
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSR----SLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDA 88 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~----~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~ 88 (336)
...|+++|||+|||.++++++|+ ++| .+|.+.++++.+ +|+++|||||+|.+. ++|++|++.+||..
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~--~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEV--SSATNALRSMQGFP 76 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCH--HHHHHHHHHhcCCe
Confidence 45789999999999999999977 888 777888888876 467999999999999 99999999999999
Q ss_pred cCCeeeEEEeccCCCC----------------------------------------------------------------
Q psy12549 89 LKGRPIRIMWSQRDPS---------------------------------------------------------------- 104 (336)
Q Consensus 89 ~~g~~i~v~~~~~~~~---------------------------------------------------------------- 104 (336)
+.|+.|+|.|+.....
T Consensus 77 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 77 FYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred eCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 9999999998765431
Q ss_pred ---------------------------------------------cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeE
Q psy12549 105 ---------------------------------------------LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS 139 (336)
Q Consensus 105 ---------------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 139 (336)
......++|||+|||..+++++|+++|+.||.|.+
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 01113467999999999999999999999999999
Q ss_pred EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEeecc
Q psy12549 140 CKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN-SKIVFVGKFI 187 (336)
Q Consensus 140 ~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~ 187 (336)
+.+..++ +|||||+|.+.++|.+|+..|||..+. |+.|.|.|++
T Consensus 237 v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 237 VRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999764 579999999999999999999999999 9999999875
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=3.1e-29 Score=208.04 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=136.2
Q ss_pred ccCceeeeecCc-hhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCee
Q psy12549 16 IPKHNVATRELS-AKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRP 93 (336)
Q Consensus 16 ~p~~~v~v~~lp-~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~ 93 (336)
.+.++|||+||| .++++++|+++| .+|.+.+++++++ ++|||||+|.++ ++|+.|++.|||..+.|++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------~~g~afV~f~~~--~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------KPGAAMVEMADG--YAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------STTCEEEEESSH--HHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------CCCEEEEEECCH--HHHHHHHHHhCCCEECCce
Confidence 367899999999 799999999999 7778889999874 368999999999 9999999999999999999
Q ss_pred eEEEeccCCCCcC-----------------------------------CCCCceEEEcCCCCCCCHHHHHHHhhccCCe-
Q psy12549 94 IRIMWSQRDPSLR-----------------------------------KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSI- 137 (336)
Q Consensus 94 i~v~~~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v- 137 (336)
|+|.++....... ....++|||+|||+++|+++|+++|++||.|
T Consensus 72 l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 72 MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 9999875321100 0123579999999999999999999999998
Q ss_pred -eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe----EEEEee
Q psy12549 138 -LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK----IVFVGK 185 (336)
Q Consensus 138 -~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~----~i~v~~ 185 (336)
.+++++.+. +.++|+|||+|.+.++|.+|+..|||..+.|. ++.|.+
T Consensus 152 ~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 152 PTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred eEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 899998876 44679999999999999999999999999875 455544
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.2e-28 Score=213.00 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=145.5
Q ss_pred CCCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 11 EEGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 11 ~~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
......+.++|||+|||+++|+++|+++| .+|.+..+.+.+ ++|||||+|.+. ++|.+|+..++|..+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---------~kg~afV~f~~~--~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---------DRGFGFIRLESR--TLAEIAKAELDGTIL 83 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---------TTTEEEEECSSH--HHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCcEEEEEECCH--HHHHHHHHHcCCcEE
Confidence 34455777899999999999999999999 777888998865 458999999999 999999999999999
Q ss_pred CCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy12549 90 KGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~ 169 (336)
.|+.|.|.++.. .++|||+|||..+|+++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|+.
T Consensus 84 ~g~~l~v~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 84 KSRPLRIRFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp TTEECEEEECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCceeEeeeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 999999999854 367999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC-CceeC---CeEEEEeeccCchh
Q psy12549 170 KVN-GMLLN---SKIVFVGKFIPRKE 191 (336)
Q Consensus 170 ~l~-~~~~~---~~~i~v~~~~~~~~ 191 (336)
.|+ +..+. +++|.|.++.+...
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HhcCCeEEecCCCceEEEeeccccCc
Confidence 994 55554 99999999876543
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.6e-28 Score=208.10 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=143.6
Q ss_pred CCccccCceeeeecCch-hhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 12 EGIIIPKHNVATRELSA-KVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 12 ~~~~~p~~~v~v~~lp~-~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
.....|.++|||+|||+ ++++++|+++| .+|.+.++++.+++ +|||||+|.+. ++|++|++.+++..+
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~--~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADG--NQAQLAMSHLNGHKL 97 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCH--HHHHHHHHHHTTCBC
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCH--HHHHHHHHHhCCCeE
Confidence 33456788999999999 99999999999 77788899998855 58999999999 999999999999999
Q ss_pred CCeeeEEEeccCCC----Cc-----------------------------CCCCCceEEEcCCCCCCCHHHHHHHhhccC-
Q psy12549 90 KGRPIRIMWSQRDP----SL-----------------------------RKSGVGNVFIKNLDKSIDNKAMYDTFSAFG- 135 (336)
Q Consensus 90 ~g~~i~v~~~~~~~----~~-----------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G- 135 (336)
.|+.|.|.++.... .. .....++|||+|||..+++++|+++|+.||
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 99999999876441 10 011257899999999999999999999999
Q ss_pred CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEeeccCc
Q psy12549 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN-SKIVFVGKFIPR 189 (336)
Q Consensus 136 ~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~~~ 189 (336)
.|..+.+..+ ++|+|||+|.+.++|.+|+..|+|..+. |+.|.|.++.+.
T Consensus 178 ~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 178 VVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999764 3689999999999999999999999999 999999998764
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=3.3e-28 Score=201.60 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=139.9
Q ss_pred CceeeeecCch-hhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeeeE
Q psy12549 18 KHNVATRELSA-KVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIR 95 (336)
Q Consensus 18 ~~~v~v~~lp~-~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~ 95 (336)
+++|||+|||+ ++++++|+++| .+|.+..+++.+++ +|||||+|.+. ++|++|++.+++..+.|++|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~--~~a~~A~~~l~~~~~~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADG--NQAQLAMSHLNGHKLHGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------SSCCEEECTTT--HHHHHHHHHHTTCCCSSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------CCEEEEEECCH--HHHHHHHHHhCCCeecCeEEE
Confidence 57899999999 99999999999 77788899998854 57999999999 999999999999999999999
Q ss_pred EEeccCCCCc---------------------------------CCCCCceEEEcCCCCCCCHHHHHHHhhccC-CeeEEE
Q psy12549 96 IMWSQRDPSL---------------------------------RKSGVGNVFIKNLDKSIDNKAMYDTFSAFG-SILSCK 141 (336)
Q Consensus 96 v~~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~ 141 (336)
|.++...... .....++|||+|||..+++++|+++|+.|| .|..+.
T Consensus 73 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~ 152 (198)
T 1qm9_A 73 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 152 (198)
T ss_dssp EEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEE
T ss_pred EEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEE
Confidence 9997654210 012257899999999999999999999999 999999
Q ss_pred EeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEeeccCc
Q psy12549 142 VAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN-SKIVFVGKFIPR 189 (336)
Q Consensus 142 ~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~~~ 189 (336)
+..+ .+|+|||+|.+.++|.+|+..|||..+. |+.|.|.++.+.
T Consensus 153 i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 153 FFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9764 3689999999999999999999999999 999999998764
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=4.7e-23 Score=154.92 Aligned_cols=110 Identities=73% Similarity=1.127 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
+.++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 357899999999999999999999999999999999864 4899999999999999999999999999999999999988
Q ss_pred chhhhHhhhccccccceEEEcCCCCCCcHHH
Q psy12549 189 RKEREKELGEKAKLFTNVYIKNFGEDFNDEK 219 (336)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 219 (336)
...............++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 7766655555555667899999999998763
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.2e-22 Score=161.88 Aligned_cols=139 Identities=14% Similarity=0.237 Sum_probs=111.2
Q ss_pred eEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCeee-------EEEeccCC----CCcCCCCCceEE
Q psy12549 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPI-------RIMWSQRD----PSLRKSGVGNVF 114 (336)
Q Consensus 46 ~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i-------~v~~~~~~----~~~~~~~~~~l~ 114 (336)
+++++.+. .+++|||||+|.+. ++|++|++.+++....+... ........ ........++||
T Consensus 2 ~~kl~ln~-----~~~~G~~fV~f~~~--~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (158)
T 2kn4_A 2 QYKLILNG-----KTLKGETTTEAVDA--ATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLK 74 (158)
T ss_dssp EEEEEEEC-----SSCEEEEEEECSSH--HHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEE
T ss_pred cEEEEecC-----ccccchhHHHHHHH--HhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEE
Confidence 45666655 36899999999999 99999998877643322222 22211111 112223457999
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 115 v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
|+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+...
T Consensus 75 v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999999996 789999999999999999999999999999999999999887643
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=2.2e-22 Score=151.20 Aligned_cols=108 Identities=31% Similarity=0.597 Sum_probs=75.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
.+|||+|||.++++++|+++|+.||.|.+++++...+.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.++..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 67999999999999999999999999999999986677899999999999999999999999999999999999987654
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCceEEEecCCCCCCHHH
Q psy12549 284 RTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDER 321 (336)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~ 321 (336)
....... .....++|||+|||+.+|++.
T Consensus 86 ~~~~~~~----------~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 86 REAELGA----------RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------------------------
T ss_pred ccccccc----------ccCCCCceEeCCCCCCccccc
Confidence 3322111 112335799999999998863
No 40
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=8.5e-22 Score=156.89 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=109.8
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchh-----hhHhhhccccccceEEEcCCCC
Q psy12549 139 SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE-----REKELGEKAKLFTNVYIKNFGE 213 (336)
Q Consensus 139 ~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~l~V~nlp~ 213 (336)
++++..+.. .++|||||+|.+.++|++|+..+++....+....+........ ............++|||+|||.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 345566543 5899999999999999999988776433222222221111100 0001112223458899999999
Q ss_pred CCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 214 DFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 214 ~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
.+++++|+++|+.||.|..+.++. .+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++.
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999987 478899999999999999999999999999999999999998763
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.1e-21 Score=153.14 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=110.2
Q ss_pred CCceEEEEEeCCcchhhHHHHHhhc-CccccCCeeeEEEeccCC--------------CCcCCCCCceEEEcCCCCCCCH
Q psy12549 60 LGSGAILVQLGQPYMLDTERALDTM-NFDALKGRPIRIMWSQRD--------------PSLRKSGVGNVFIKNLDKSIDN 124 (336)
Q Consensus 60 ~~~g~afV~f~~~~~~~A~~A~~~~-~~~~~~g~~i~v~~~~~~--------------~~~~~~~~~~l~v~nlp~~~t~ 124 (336)
.-+|+++|+|.+. ++|++|++.+ |+..+.| ++.+.++... ........++|||+|||+++++
T Consensus 11 ~l~G~~~ve~~~~--~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 11 TLKGETTTEAVDA--ATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSCEEEEEECSSH--HHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccceeeecCH--HHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 4689999999999 9999999999 9999999 9999886542 1233345689999999999999
Q ss_pred HHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 125 KAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 125 ~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
++|+++|+.||.|..+.++.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999886 5789999999999999999999999999999999998765
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=2.3e-21 Score=152.92 Aligned_cols=129 Identities=23% Similarity=0.286 Sum_probs=111.2
Q ss_pred CcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEeeccCchhhh--------HhhhccccccceEEEcCCCCCCcHHH
Q psy12549 149 NSKGYGFVHFETEEAANKSIEKV-NGMLLNSKIVFVGKFIPRKERE--------KELGEKAKLFTNVYIKNFGEDFNDEK 219 (336)
Q Consensus 149 ~~~g~afV~F~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~~~~~~~--------~~~~~~~~~~~~l~V~nlp~~~t~~~ 219 (336)
..+|+++++|.+.++|++|++.+ |+..++| .+.+.++....... ..........++|||+|||..+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 46789999999999999999999 9999999 99998876532211 01122334458999999999999999
Q ss_pred HHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 220 LKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 220 l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
|+++|+.||.|.++.++.. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 90 l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999864 5899999999999999999999999999999999999875
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=133.37 Aligned_cols=80 Identities=31% Similarity=0.549 Sum_probs=76.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++|+++|+++|++||.|.++.+++++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999987 78999999999999999999999999999999999999986
Q ss_pred C
Q psy12549 188 P 188 (336)
Q Consensus 188 ~ 188 (336)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=131.27 Aligned_cols=78 Identities=27% Similarity=0.522 Sum_probs=74.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||.++|+++|+++|++||+|.++.++. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 37899999999999999999999999999999987 6788999999999999999999999999999999999999976
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=126.92 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=79.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++++++|+++|++||.|.++.++.++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35789999999999999999999999999999999998 69999999999999999999999999999999999999987
Q ss_pred CchhhhH
Q psy12549 188 PRKEREK 194 (336)
Q Consensus 188 ~~~~~~~ 194 (336)
.......
T Consensus 85 ~~~~~~~ 91 (110)
T 3s8s_A 85 KGQQRMK 91 (110)
T ss_dssp TTHHHHH
T ss_pred CCcHHHH
Confidence 7655443
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=126.81 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=76.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
+.++|||+|||+.+++++|+++|++||.|.++.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 347899999999999999999999999999999987 568899999999999999999999999999999999999997
Q ss_pred cchhh
Q psy12549 280 KKAER 284 (336)
Q Consensus 280 ~~~~~ 284 (336)
.....
T Consensus 85 ~~~~~ 89 (110)
T 3s8s_A 85 KGQQR 89 (110)
T ss_dssp TTHHH
T ss_pred CCcHH
Confidence 66443
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=127.12 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=73.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEeecc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFG-SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKV-NGMLLNSKIVFVGKFI 187 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~ 187 (336)
.+|||+|||+++|+++|+++|++|| .|.+|++++++ +|.++|||||+|.+.++|.+|++.+ ++..+.|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999987 7899999999999999999999977 4567999999999988
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 48
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=9e-19 Score=131.57 Aligned_cols=103 Identities=26% Similarity=0.387 Sum_probs=91.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
..++|||+|||..+++++|+++|+.||.|..+.++. ++.++|+|||+|.+.++|.+|+..|||..+.|+.|.|.++.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC-STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 347899999999999999999999999999999986 3556999999999999999999999999999999999999865
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCceEEEecCCCCCCHHHHHHhcCCCCC
Q psy12549 282 AERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGT 331 (336)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~ 331 (336)
... ++++...++++|.++|++||.
T Consensus 86 ~~~--------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 RAF--------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHT--------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhh--------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 322 466777888999999999884
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-19 Score=126.50 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=73.1
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCC-ceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhC-CceecCEEEEEeecc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYG-TITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWN-GKEVDGKILYVGRAQ 279 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g-~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~-g~~~~g~~l~v~~~~ 279 (336)
++|||+|||.++|+++|+++|++|| .|.++++++ .+|.++|||||+|.+.++|.+|++.++ +..++|++|+|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 799999887 678899999999999999999999874 567999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++.+
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
No 50
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=6.6e-19 Score=135.88 Aligned_cols=124 Identities=15% Similarity=0.266 Sum_probs=81.6
Q ss_pred eEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEE
Q psy12549 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKV 142 (336)
Q Consensus 63 g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~ 142 (336)
-++|.+|... ..|..|+..+++....|+. .+. ...+.......++|||+|||.++++++|+++|+.||.|..+.+
T Consensus 5 ~~~~~~~~~~--~~~~~a~~~~~g~~~~g~~-~~~--~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGL--VPRGSHMASMTGGQQMGRG-SMS--YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp ---------------------------------CC--SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCC--CchhhhhhhccCCCCCCCC-CCC--cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 3578888888 8888899888887665543 112 2233334455689999999999999999999999999999999
Q ss_pred eeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 143 AQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 143 ~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
+.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+...
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9986 788999999999999999999999999999999999999887543
No 51
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=9.8e-18 Score=118.13 Aligned_cols=79 Identities=29% Similarity=0.529 Sum_probs=75.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
.+|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999999985 7889999999999999999999999999999999999998765
No 52
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=9.1e-18 Score=119.41 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999996 88899999999999999999999999999999999999987
Q ss_pred Cc
Q psy12549 188 PR 189 (336)
Q Consensus 188 ~~ 189 (336)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 53
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=3.1e-18 Score=128.63 Aligned_cols=104 Identities=22% Similarity=0.423 Sum_probs=92.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||..+++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34578999999999999999999999999999999875 4458999999999999999999999999999999999987
Q ss_pred CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCc
Q psy12549 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229 (336)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~ 229 (336)
+.... .+++...++++|.++|++||.
T Consensus 84 ~~~~~----------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF----------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT----------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh----------------hhhhHhHhHHHHHHHHHHhCC
Confidence 65432 467888899999999999984
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=121.47 Aligned_cols=83 Identities=22% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=123.93 Aligned_cols=78 Identities=13% Similarity=0.331 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCeEEEE
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGS--ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGM----LLNSKIVFV 183 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~----~~~~~~i~v 183 (336)
.+|||+|||+++|+++|+++|++||. +..|++++++ +|.++|||||+|.+.++|.+|++.||+. .++|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 58999999999999999999999995 6689999987 7899999999999999999999999986 589999999
Q ss_pred eeccC
Q psy12549 184 GKFIP 188 (336)
Q Consensus 184 ~~~~~ 188 (336)
.++.+
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 56
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=123.40 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCc--eeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCc----eecCEE
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGK----EVDGKI 272 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~--i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~----~~~g~~ 272 (336)
....+|||+|||+.+|+++|+++|++||. +.++++++ .+|.++|||||+|.+.++|.+|++.|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34588999999999999999999999995 56888876 57889999999999999999999999997 589999
Q ss_pred EEEeeccc
Q psy12549 273 LYVGRAQK 280 (336)
Q Consensus 273 l~v~~~~~ 280 (336)
|.|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=9.9e-18 Score=118.10 Aligned_cols=79 Identities=29% Similarity=0.571 Sum_probs=74.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.+|||+|||.++++++|+++|+.||+|..+.++. .++.++|+|||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5799999999999999999999999999999886 57888999999999999999999999999999999999999876
Q ss_pred h
Q psy12549 282 A 282 (336)
Q Consensus 282 ~ 282 (336)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=6.8e-19 Score=135.79 Aligned_cols=123 Identities=21% Similarity=0.263 Sum_probs=78.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCcee
Q psy12549 152 GYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231 (336)
Q Consensus 152 g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~ 231 (336)
.++|++|++...+..|+..+++....|+.- ..+..+. ......++|||+|||..+++++|+++|+.||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~--------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPP--------PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp -------------------------------CCSCCSC--------SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCC--------CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 478899999999999999988876655442 2222221 2223347899999999999999999999999999
Q ss_pred EEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 232 SYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 232 ~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
.+.++. .++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+...
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999987 4788999999999999999999999999999999999999987643
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=118.91 Aligned_cols=79 Identities=28% Similarity=0.556 Sum_probs=73.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||..+++++|+++|+.||.|.++.+.. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 47899999999999999999999999999999987 5788999999999999999999999999999999999999987
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 60
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=126.80 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=83.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCch
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999987 68899999999999999999999999999999999998765
Q ss_pred hhhHhhhc--cccccceEEEcCCC
Q psy12549 191 EREKELGE--KAKLFTNVYIKNFG 212 (336)
Q Consensus 191 ~~~~~~~~--~~~~~~~l~V~nlp 212 (336)
........ ......++||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CcccCCCCCccccCCCceecCCCC
Confidence 43222111 12224679999986
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=2.2e-17 Score=119.65 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=79.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4789999999999999999999999999999999986 688999999999999999999999999999999999999988
Q ss_pred chhhhH
Q psy12549 189 RKEREK 194 (336)
Q Consensus 189 ~~~~~~ 194 (336)
......
T Consensus 82 ~~~~~~ 87 (96)
T 2x1f_A 82 SDISGV 87 (96)
T ss_dssp SSGGGH
T ss_pred CCCCCc
Confidence 765543
No 62
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=122.62 Aligned_cols=86 Identities=28% Similarity=0.468 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||.++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44557899999999999999999999999999999999996 78899999999999999999999999999999999999
Q ss_pred eccCchh
Q psy12549 185 KFIPRKE 191 (336)
Q Consensus 185 ~~~~~~~ 191 (336)
++.+...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9887653
No 63
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.7e-17 Score=117.50 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345899999999999999999999999999999999885 7889999999999999999999999999999999999886
Q ss_pred c
Q psy12549 187 I 187 (336)
Q Consensus 187 ~ 187 (336)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=1.4e-17 Score=122.84 Aligned_cols=84 Identities=26% Similarity=0.404 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEEe
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS---KIVFVG 184 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~---~~i~v~ 184 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|++.||+..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45689999999999999999999999999999999999989999999999999999999999999999988 999999
Q ss_pred eccCchh
Q psy12549 185 KFIPRKE 191 (336)
Q Consensus 185 ~~~~~~~ 191 (336)
++.+...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9887654
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.2e-17 Score=118.21 Aligned_cols=79 Identities=30% Similarity=0.499 Sum_probs=73.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||.++++++|+++|++||.|..+.++. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999999999876 67888999999999999999999999999999999999987
Q ss_pred c
Q psy12549 279 Q 279 (336)
Q Consensus 279 ~ 279 (336)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=123.74 Aligned_cols=85 Identities=32% Similarity=0.566 Sum_probs=78.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 105 LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 105 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
......++|||+|||..+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344556899999999999999999999999999999999986 7889999999999999999999999999999999999
Q ss_pred eeccCc
Q psy12549 184 GKFIPR 189 (336)
Q Consensus 184 ~~~~~~ 189 (336)
.++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998765
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=118.21 Aligned_cols=82 Identities=23% Similarity=0.370 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999987 688999999999999999999999999999999999998
Q ss_pred ccC
Q psy12549 186 FIP 188 (336)
Q Consensus 186 ~~~ 188 (336)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 764
No 68
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.1e-17 Score=133.92 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=77.1
Q ss_pred EEeCCHHHHHHHHHHhCCceeC--CeEEEEeeccCchhh------------hHhhhccccccceEEEcCCCCCCcHHHHH
Q psy12549 156 VHFETEEAANKSIEKVNGMLLN--SKIVFVGKFIPRKER------------EKELGEKAKLFTNVYIKNFGEDFNDEKLK 221 (336)
Q Consensus 156 V~F~~~~~a~~a~~~l~~~~~~--~~~i~v~~~~~~~~~------------~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 221 (336)
..|.+.++|..|+..+++.... |+.....+....... ...........++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6789999999999988886654 555554432211100 11111223344789999999999999999
Q ss_pred HhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchhh
Q psy12549 222 EMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284 (336)
Q Consensus 222 ~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 284 (336)
++|+.||.|..+.++. .+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 9999999999999987 57889999999999999999999999999999999999999876543
No 69
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=120.31 Aligned_cols=85 Identities=28% Similarity=0.482 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 446899999999999999999999999999999999998 8889999999999999999999999999999999999999
Q ss_pred cCchhh
Q psy12549 187 IPRKER 192 (336)
Q Consensus 187 ~~~~~~ 192 (336)
.+....
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887543
No 70
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=3.3e-18 Score=122.48 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=71.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFG--SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
.+|||+|||.++++++|+++|+.|| .|.++.++.++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999997 88999999999999999999999999999999999999988
Q ss_pred Cchh
Q psy12549 188 PRKE 191 (336)
Q Consensus 188 ~~~~ 191 (336)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=119.01 Aligned_cols=81 Identities=25% Similarity=0.487 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||..+++++|+++|+.||.|..+.++.++.|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 34589999999999999999999999999999999999888899999999999999999999999999999999998875
Q ss_pred C
Q psy12549 188 P 188 (336)
Q Consensus 188 ~ 188 (336)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 72
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=2.9e-17 Score=119.04 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=77.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||..+++++|+++|+.||.|.++.+.. .+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 37899999999999999999999999999999987 4688899999999999999999999999999999999999988
Q ss_pred chhhHH
Q psy12549 281 KAERTQ 286 (336)
Q Consensus 281 ~~~~~~ 286 (336)
+.....
T Consensus 82 ~~~~~~ 87 (96)
T 2x1f_A 82 SDISGV 87 (96)
T ss_dssp SSGGGH
T ss_pred CCCCCc
Confidence 765433
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=119.79 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=76.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 105 LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS--------CKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGML 175 (336)
Q Consensus 105 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~ 175 (336)
......++|||+|||.++++++|+++|++||.|.. +.++.++ +|.++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34455689999999999999999999999999999 9999986 78999999999999999999999999999
Q ss_pred eCCeEEEEeec
Q psy12549 176 LNSKIVFVGKF 186 (336)
Q Consensus 176 ~~~~~i~v~~~ 186 (336)
+.|+.|.|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999886
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-17 Score=117.54 Aligned_cols=80 Identities=24% Similarity=0.473 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456799999999999999999999999999999999987 5889999999999999999999999999999999999886
Q ss_pred c
Q psy12549 187 I 187 (336)
Q Consensus 187 ~ 187 (336)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=2.2e-17 Score=132.07 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=78.0
Q ss_pred EEeCCcchhhHHHHHhhcCccccC--CeeeEEEeccCC------------------CCcCCCCCceEEEcCCCCCCCHHH
Q psy12549 67 VQLGQPYMLDTERALDTMNFDALK--GRPIRIMWSQRD------------------PSLRKSGVGNVFIKNLDKSIDNKA 126 (336)
Q Consensus 67 V~f~~~~~~~A~~A~~~~~~~~~~--g~~i~v~~~~~~------------------~~~~~~~~~~l~v~nlp~~~t~~~ 126 (336)
.+|... ++|..|+..+++.... |+.....+.... ........++|||+|||..+++++
T Consensus 11 ee~e~~--~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVD--EDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhcc--ccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 688889 9999999988887654 555554442110 011223456899999999999999
Q ss_pred HHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhh
Q psy12549 127 MYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192 (336)
Q Consensus 127 l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 192 (336)
|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+....
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999999999986 8889999999999999999999999999999999999998766543
No 76
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=119.26 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCce--ecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKE--VDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~--~~g~~l~v~~~ 278 (336)
.+.++|||+|||+++++++|+++|++||.|.++.+++ .+|+|||+|.+.++|.+|++.++|.. +.|++|+|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4558899999999999999999999999999999985 37899999999999999999999876 78999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
+++.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8763
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=119.23 Aligned_cols=83 Identities=30% Similarity=0.594 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45889999999999999999999999999999999987 68899999999999999999999999999999999999988
Q ss_pred Cchh
Q psy12549 188 PRKE 191 (336)
Q Consensus 188 ~~~~ 191 (336)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.9e-18 Score=122.74 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+|||.++|+++|+++|+.||+|.+|.++.++.|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4578999999999999999999999999999999999888999999999999999999999 899999999999998766
Q ss_pred chhh
Q psy12549 189 RKER 192 (336)
Q Consensus 189 ~~~~ 192 (336)
....
T Consensus 89 ~~~~ 92 (103)
T 1s79_A 89 YFAK 92 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 79
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.8e-17 Score=114.84 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=69.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
...|+|+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|++|++.|||..+.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999975 59999999999999999999999999999999999994
No 80
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=6.4e-17 Score=121.36 Aligned_cols=87 Identities=28% Similarity=0.458 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||..+++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999996 88899999999999999999999999999999999999
Q ss_pred eccCchhh
Q psy12549 185 KFIPRKER 192 (336)
Q Consensus 185 ~~~~~~~~ 192 (336)
++.+....
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 98876543
No 81
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=120.80 Aligned_cols=85 Identities=38% Similarity=0.671 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
.....++|||+|||.++++++|+++|+.||.|..+.++.+ +|.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3446689999999999999999999999999999999998 888999999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 887654
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=119.72 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=76.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||..+++++|+++|+.||.|..+.+.. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 447899999999999999999999999999999987 6688899999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 96 ~~ 97 (100)
T 2do4_A 96 GP 97 (100)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 83
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=3.9e-17 Score=122.54 Aligned_cols=85 Identities=26% Similarity=0.448 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3455899999999999999999999999999999999997 789999999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 887654
No 84
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=117.96 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=73.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||+|..+.+.. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4458899999999999999999999999999999987 55788999999999999999999999999999999999997
Q ss_pred c
Q psy12549 279 Q 279 (336)
Q Consensus 279 ~ 279 (336)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 85
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=120.98 Aligned_cols=83 Identities=43% Similarity=0.744 Sum_probs=77.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSC-KVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
..++|||+|||.++++++|+++|+.||.|..+ .++.++ +|.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45889999999999999999999999999999 999985 7889999999999999999999999999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87654
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=121.42 Aligned_cols=83 Identities=24% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456789999999999999999999999999999999987 6889999999999999999999999999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.+..
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7643
No 87
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=124.04 Aligned_cols=85 Identities=24% Similarity=0.430 Sum_probs=79.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.||.|..+.+..+++|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44689999999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred Cchhh
Q psy12549 188 PRKER 192 (336)
Q Consensus 188 ~~~~~ 192 (336)
+....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=117.71 Aligned_cols=80 Identities=26% Similarity=0.422 Sum_probs=74.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
.+.++|||+|||..+++++|+++|+.||.|..+.++. .++.++|+|||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 3458899999999999999999999999999999986 55788999999999999999999999999999999999998
Q ss_pred cc
Q psy12549 279 QK 280 (336)
Q Consensus 279 ~~ 280 (336)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 89
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=9.4e-18 Score=122.52 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=75.5
Q ss_pred cceEEEcCCCC------CCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecC-EEE
Q psy12549 203 FTNVYIKNFGE------DFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG-KIL 273 (336)
Q Consensus 203 ~~~l~V~nlp~------~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g-~~l 273 (336)
.++|||+|||. ++++++|+++|++||.|.++.++. .+|.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 999999999999999999999887 568999999999999999999999999999999 999
Q ss_pred EEeecccchh
Q psy12549 274 YVGRAQKKAE 283 (336)
Q Consensus 274 ~v~~~~~~~~ 283 (336)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999987643
No 90
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=119.65 Aligned_cols=82 Identities=27% Similarity=0.450 Sum_probs=76.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 448899999999999999999999999999999987 478899999999999999999999999999999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++..
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 8754
No 91
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.7e-17 Score=118.73 Aligned_cols=83 Identities=28% Similarity=0.506 Sum_probs=76.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||..+++++|+++|+.||.|..+.++...+.++|+|||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 34589999999999999999999999999999999986556899999999999999999999999999999999999987
Q ss_pred chh
Q psy12549 281 KAE 283 (336)
Q Consensus 281 ~~~ 283 (336)
+..
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 92
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=118.49 Aligned_cols=82 Identities=27% Similarity=0.651 Sum_probs=76.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||+|||..+++++|+++|+.||.|..+.+.. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 347899999999999999999999999999999988 468889999999999999999999999999999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7643
No 93
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=120.46 Aligned_cols=86 Identities=24% Similarity=0.491 Sum_probs=79.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34556899999999999999999999999999999999987 78899999999999999999999999999999999999
Q ss_pred eccCchh
Q psy12549 185 KFIPRKE 191 (336)
Q Consensus 185 ~~~~~~~ 191 (336)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9877643
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=6e-18 Score=123.57 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=76.5
Q ss_pred CceEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eEE
Q psy12549 110 VGNVFIKNLDK------SIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNS-KIV 181 (336)
Q Consensus 110 ~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~-~~i 181 (336)
.++|||+|||. ++++++|+++|++||.|.++.++.++ +|.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 99999999999999999999999998 59999999999999999999999999999999 999
Q ss_pred EEeeccCch
Q psy12549 182 FVGKFIPRK 190 (336)
Q Consensus 182 ~v~~~~~~~ 190 (336)
.|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999987654
No 95
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=120.54 Aligned_cols=80 Identities=15% Similarity=0.288 Sum_probs=72.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhC--CceecCEEEEEee
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN--GKEVDGKILYVGR 277 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~--g~~~~g~~l~v~~ 277 (336)
....++|||+|||+++++++|+++|++||.|.++.+++. +|||||+|.+.++|.+|++.++ +..+.|++|+|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 344589999999999999999999999999999999864 8999999999999999999886 4789999999999
Q ss_pred cccchh
Q psy12549 278 AQKKAE 283 (336)
Q Consensus 278 ~~~~~~ 283 (336)
+.++..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 987644
No 96
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=118.39 Aligned_cols=83 Identities=20% Similarity=0.432 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999986 68899999999999999999999 9999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87654
No 97
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=117.28 Aligned_cols=85 Identities=28% Similarity=0.513 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445689999999999999999999999999999999998755 899999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cq3_A 90 ATARVM 95 (103)
T ss_dssp CCSSCC
T ss_pred cccCCC
Confidence 887643
No 98
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.9e-17 Score=119.47 Aligned_cols=83 Identities=28% Similarity=0.507 Sum_probs=76.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 3458899999999999999999999999999999987 57889999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 99
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=122.15 Aligned_cols=83 Identities=29% Similarity=0.634 Sum_probs=76.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
....++|||+|||..+++++|+++|+.||.|..+.++. .+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999986 6788899999999999999999999999999999999999
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
No 100
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=119.65 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=76.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||..+++++|+++|+.||.|..+.+....+.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 34589999999999999999999999999999999986666799999999999999999999999999999999999987
Q ss_pred chh
Q psy12549 281 KAE 283 (336)
Q Consensus 281 ~~~ 283 (336)
+..
T Consensus 93 ~~~ 95 (103)
T 2cqi_A 93 PSS 95 (103)
T ss_dssp TTC
T ss_pred Ccc
Confidence 643
No 101
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=9.1e-17 Score=114.17 Aligned_cols=79 Identities=24% Similarity=0.565 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999997 68999999999999999999997 588899999999976
Q ss_pred c
Q psy12549 186 F 186 (336)
Q Consensus 186 ~ 186 (336)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=119.49 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=78.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456889999999999999999999999999999999986 7889999999999999999999999999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 103
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=120.71 Aligned_cols=86 Identities=15% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred eccCchh
Q psy12549 185 KFIPRKE 191 (336)
Q Consensus 185 ~~~~~~~ 191 (336)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9886543
No 104
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=9e-17 Score=118.92 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||..+++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999998874
No 105
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=6e-18 Score=121.11 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCC--ceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYG--TITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g--~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
.+|||+|||.++++++|+++|+.|| .|.++.++. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999887 588999999999999999999999999999999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7644
No 106
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=116.99 Aligned_cols=82 Identities=21% Similarity=0.437 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGN-SKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~-~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
..++|||+|||.++++++|+++|+.||.|..+.++.++ ++. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999999887 333 8899999999999999999999999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 107
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=117.15 Aligned_cols=84 Identities=21% Similarity=0.352 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
....++|||+|||..+++++|+++|+.||.|..|.++.++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345689999999999999999999999999999999998644 6899999999999999999999999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 87653
No 108
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=4.6e-17 Score=121.15 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||..+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 456789999999999999999999999999999999986 7889999999999999999999999999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.+..
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7654
No 109
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=6.1e-17 Score=115.60 Aligned_cols=79 Identities=18% Similarity=0.389 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4789999999999999999999999999999999987 8889999999999999999999 8999999999999999876
Q ss_pred c
Q psy12549 189 R 189 (336)
Q Consensus 189 ~ 189 (336)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=2.7e-17 Score=118.27 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=76.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
..++|||+|||..+++++|+++|+.||.|..+.+...++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 44889999999999999999999999999999998888889999999999999999999999999999999999999876
Q ss_pred h
Q psy12549 282 A 282 (336)
Q Consensus 282 ~ 282 (336)
.
T Consensus 87 ~ 87 (92)
T 2dgv_A 87 S 87 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 111
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=117.50 Aligned_cols=80 Identities=26% Similarity=0.483 Sum_probs=74.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
...++|||+|||..+++++|+++|+.||+|..+.+.. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 3448899999999999999999999999999999987 558889999999999999999999999999999999999986
Q ss_pred c
Q psy12549 280 K 280 (336)
Q Consensus 280 ~ 280 (336)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=120.39 Aligned_cols=82 Identities=50% Similarity=0.831 Sum_probs=77.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
..++|||+|||..+++++|+++|+.||.|..+.+...++.+++||||+|.+.++|.+|+..|||..+.|+.|.|.++.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 45889999999999999999999999999999998878889999999999999999999999999999999999999876
Q ss_pred hh
Q psy12549 282 AE 283 (336)
Q Consensus 282 ~~ 283 (336)
..
T Consensus 94 ~~ 95 (103)
T 2d9p_A 94 EE 95 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=121.68 Aligned_cols=82 Identities=28% Similarity=0.517 Sum_probs=76.3
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
....++|||+|||..+++++|+++|+.||.|..+.+....+.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34458999999999999999999999999999999988666789999999999999999999999999999999999998
Q ss_pred cc
Q psy12549 280 KK 281 (336)
Q Consensus 280 ~~ 281 (336)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 114
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.3e-17 Score=119.69 Aligned_cols=84 Identities=29% Similarity=0.460 Sum_probs=78.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVN------GMLLNSKI 180 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~------~~~~~~~~ 180 (336)
...++|||+|||.++++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+..++ +..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456789999999999999999999999999999999987 68899999999999999999999999 99999999
Q ss_pred EEEeeccCchh
Q psy12549 181 VFVGKFIPRKE 191 (336)
Q Consensus 181 i~v~~~~~~~~ 191 (336)
|.|.++.++..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999887644
No 115
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=121.56 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=76.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.+.. .+|.++|+|||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 3447899999999999999999999999999999986 56888999999999999999999999999999999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8763
No 116
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=120.08 Aligned_cols=84 Identities=25% Similarity=0.477 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999986 7789999999999999999999999999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 77653
No 117
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=7.6e-17 Score=119.32 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=74.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
....++|||+|||..+++++|+++|+.||.|..+.++. .+|.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34558999999999999999999999999999999887 67888999999999999999999999999999999999997
Q ss_pred c
Q psy12549 279 Q 279 (336)
Q Consensus 279 ~ 279 (336)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 118
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=120.34 Aligned_cols=85 Identities=28% Similarity=0.525 Sum_probs=77.4
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 104 SLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 104 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
.......++|||+|||.++++++|+++|+.||.|..+.+..++.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344456789999999999999999999999999999999988644 8999999999999999999999999999999999
Q ss_pred eeccCc
Q psy12549 184 GKFIPR 189 (336)
Q Consensus 184 ~~~~~~ 189 (336)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998764
No 119
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-17 Score=119.37 Aligned_cols=86 Identities=19% Similarity=0.436 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeC-C-CCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEE
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-E-QGNSKGYGFVHFETEEAANKSIEKV-NGMLLNSKIVF 182 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~-~~~~~g~afV~F~~~~~a~~a~~~l-~~~~~~~~~i~ 182 (336)
.....++|||+|||..+++++|+++|+.||.|..|.++.+ + ++.++|||||+|.+.++|.+|+..| |+..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445689999999999999999999999999999999998 3 7889999999999999999999999 99999999999
Q ss_pred EeeccCchh
Q psy12549 183 VGKFIPRKE 191 (336)
Q Consensus 183 v~~~~~~~~ 191 (336)
|.++.+...
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999887644
No 120
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=119.44 Aligned_cols=83 Identities=29% Similarity=0.454 Sum_probs=76.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 3458899999999999999999999999999999877 56788999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 121
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.9e-17 Score=118.33 Aligned_cols=82 Identities=35% Similarity=0.528 Sum_probs=75.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--C---CCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--N---DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~---~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
..++|||+|||.++++++|+++|+.||.|..+.+.. . ++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 347899999999999999999999999999999987 2 34889999999999999999999999999999999999
Q ss_pred ecccchh
Q psy12549 277 RAQKKAE 283 (336)
Q Consensus 277 ~~~~~~~ 283 (336)
++.++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9987643
No 122
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=118.10 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG--MLLNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~--~~~~~~~i~v~~ 185 (336)
...++|||+|||+++|+++|+++|++||.|.++.++++ +|||||+|.+.++|..|++.+++ ..+.|++|.|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 44588999999999999999999999999999999875 68999999999999999998864 789999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.++..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 876543
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=128.00 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFG--SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
..++|||+|||.++++++|+++|+.|| .|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999997 899999999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 876543
No 124
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=115.95 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMY----DTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
...++|||+|||.++++++|+ ++|++||.|.++.++.++.+ +|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345789999999999999999 99999999999999988755 889999999999999999999999999999999
Q ss_pred eeccCch
Q psy12549 184 GKFIPRK 190 (336)
Q Consensus 184 ~~~~~~~ 190 (336)
.++.+..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9987653
No 125
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=118.88 Aligned_cols=82 Identities=24% Similarity=0.502 Sum_probs=76.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEE-EEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY-RVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~-~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
..++|||+|||..+++++|+++|+.||.|..+ .++. .++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34889999999999999999999999999999 8887 67888999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87643
No 126
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=117.43 Aligned_cols=83 Identities=29% Similarity=0.532 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCC--C--CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ--G--NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~--~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
..++|||+|||.++++++|+++|+.||.|..+.+..++. | .++|||||+|.+.++|.+|+..||+..+.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999999999998763 3 789999999999999999999999999999999999
Q ss_pred eccCchh
Q psy12549 185 KFIPRKE 191 (336)
Q Consensus 185 ~~~~~~~ 191 (336)
++.+...
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9877643
No 127
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=118.01 Aligned_cols=82 Identities=22% Similarity=0.501 Sum_probs=75.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 3458999999999999999999999999999999987 568889999999999999999998 9999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87643
No 128
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=5e-17 Score=120.95 Aligned_cols=82 Identities=26% Similarity=0.389 Sum_probs=76.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .+|.++|+|||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 3457899999999999999999999999999999976 57888999999999999999999999999999999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8764
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=8.2e-17 Score=111.58 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=68.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|.+|++.||+..+.|++|.|..+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999875 58999999999999999999999999999999998873
No 130
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=118.49 Aligned_cols=83 Identities=29% Similarity=0.388 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 131
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=113.95 Aligned_cols=80 Identities=16% Similarity=0.331 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.| .|..+.++.+.+|.++|||||+|.+.++|.+|+. +|+..+.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456899999999999999999999999 8999999999889999999999999999999999 99999999999999987
Q ss_pred Cc
Q psy12549 188 PR 189 (336)
Q Consensus 188 ~~ 189 (336)
+.
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 132
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=5.6e-17 Score=121.66 Aligned_cols=82 Identities=33% Similarity=0.560 Sum_probs=76.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||+|||.++++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 447899999999999999999999999999999987 478899999999999999999999999999999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++..
T Consensus 104 ~~~~ 107 (115)
T 2cpz_A 104 SKND 107 (115)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7643
No 133
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=9.9e-17 Score=120.31 Aligned_cols=83 Identities=29% Similarity=0.550 Sum_probs=77.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3458899999999999999999999999999999987 47889999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87643
No 134
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7e-17 Score=117.74 Aligned_cols=83 Identities=22% Similarity=0.386 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL-SCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI----V 181 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~----i 181 (336)
...++|||+|||.++++++|+++|++||.|. .+.++.++ +|.++|||||+|.+.++|.+|++.||+..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3468999999999999999999999999999 99999997 7889999999999999999999999999999999 9
Q ss_pred EEeeccCch
Q psy12549 182 FVGKFIPRK 190 (336)
Q Consensus 182 ~v~~~~~~~ 190 (336)
.|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987653
No 135
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=7e-17 Score=119.31 Aligned_cols=86 Identities=21% Similarity=0.332 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeEE
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLL---NSKIV 181 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~---~~~~i 181 (336)
.....++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 33456899999999999999999999999999999999987 688999999999999999999999999987 89999
Q ss_pred EEeeccCchh
Q psy12549 182 FVGKFIPRKE 191 (336)
Q Consensus 182 ~v~~~~~~~~ 191 (336)
.|.++.+...
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999877643
No 136
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=119.31 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSA-FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML-LNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~-~~~~~i~v~~ 185 (336)
...++|||+|||.++++++|+++|+. ||.|..+.++.+++|.++|||||+|.+.++|.+|++.|++.. +.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 44588999999999999999999999 999999999999988999999999999999999999999999 9999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 876654
No 137
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.8e-17 Score=119.98 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=74.1
Q ss_pred ccceEEEcCCCCCCcHHHHH---HhhccCCceeEEEEeCCC-----CccceEEEEEeCCHHHHHHHHHHhCCceecCEEE
Q psy12549 202 LFTNVYIKNFGEDFNDEKLK---EMFEPYGTITSYRVMNND-----GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL 273 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~---~~f~~~g~i~~~~i~~~~-----~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l 273 (336)
..++|||+|||.++++++|+ ++|++||+|..+.+.... +.++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 34789999999999999999 999999999999998732 2567999999999999999999999999999999
Q ss_pred EEeecccch
Q psy12549 274 YVGRAQKKA 282 (336)
Q Consensus 274 ~v~~~~~~~ 282 (336)
+|.++.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998774
No 138
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=114.91 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML--LNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~--~~~~~i~v~~ 185 (336)
..+++|||+|||.++|+++|+++|++||.|.++.+++ ++|+|||+|.+.++|.+|++.|++.. +.|++|.|.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 4457899999999999999999999999999999985 37899999999999999999998865 7899999999
Q ss_pred ccCc
Q psy12549 186 FIPR 189 (336)
Q Consensus 186 ~~~~ 189 (336)
+.++
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 8764
No 139
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=119.07 Aligned_cols=85 Identities=26% Similarity=0.534 Sum_probs=79.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||..+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4789999999999999999999999999999999986 788999999999999999999999999999999999999988
Q ss_pred chhhhH
Q psy12549 189 RKEREK 194 (336)
Q Consensus 189 ~~~~~~ 194 (336)
......
T Consensus 88 ~~~~~~ 93 (104)
T 1p1t_A 88 EKNKEE 93 (104)
T ss_dssp TTHHHH
T ss_pred ccchhh
Confidence 766543
No 140
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=117.50 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=73.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeE--------EEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceec
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS--------YRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD 269 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~--------~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~ 269 (336)
....++|||+|||.++++++|+++|+.||.|.. +.+.. .+|.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344589999999999999999999999999999 88876 57889999999999999999999999999999
Q ss_pred CEEEEEeecc
Q psy12549 270 GKILYVGRAQ 279 (336)
Q Consensus 270 g~~l~v~~~~ 279 (336)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 141
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=119.64 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=72.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.++|||+|||.++|+++|+++|++||+|.++.++. ..|.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++...
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~~ 89 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDDY 89 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchHH
Confidence 47899999999999999999999999999999988 448899999999999999999999 8999999999999987654
No 142
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1e-16 Score=115.17 Aligned_cols=82 Identities=30% Similarity=0.481 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.||.|..+.+..+ +|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34589999999999999999999999999999999984 77899999999999999999999999999999999999987
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 143
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=4.4e-17 Score=125.12 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGS---ILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
....++|||+|||.++|+++|+++|+.||. |..|.++.++.|.++|||||+|.+.++|++|++ +|+..+.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345689999999999999999999999999 889999999889999999999999999999999 9999999999999
Q ss_pred eeccCch
Q psy12549 184 GKFIPRK 190 (336)
Q Consensus 184 ~~~~~~~ 190 (336)
.++.+..
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 8876443
No 144
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=9.3e-17 Score=121.04 Aligned_cols=80 Identities=30% Similarity=0.470 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999986 788999999999999999999999999999999999987
Q ss_pred c
Q psy12549 186 F 186 (336)
Q Consensus 186 ~ 186 (336)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 145
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=7.1e-17 Score=123.34 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999986 688999999999999999999999999999999999999
Q ss_pred ccCch
Q psy12549 186 FIPRK 190 (336)
Q Consensus 186 ~~~~~ 190 (336)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 87654
No 146
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=7.6e-17 Score=118.90 Aligned_cols=82 Identities=26% Similarity=0.447 Sum_probs=76.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecC---EEEEEee
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG---KILYVGR 277 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g---~~l~v~~ 277 (336)
..++|||+|||..+++++|+++|+.||.|..+.+.. .++.++|||||+|.+.++|.+|++.|||..+.| +.|+|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 458999999999999999999999999999999987 678889999999999999999999999999998 9999999
Q ss_pred cccchh
Q psy12549 278 AQKKAE 283 (336)
Q Consensus 278 ~~~~~~ 283 (336)
+.++..
T Consensus 94 a~~~~~ 99 (105)
T 2dnh_A 94 ADTDKE 99 (105)
T ss_dssp SCSSCC
T ss_pred CccCcc
Confidence 987643
No 147
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.3e-17 Score=118.76 Aligned_cols=83 Identities=30% Similarity=0.631 Sum_probs=77.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||..+++++|+++|+.||.|..+.+.. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 37899999999999999999999999999999887 5788999999999999999999999999999999999999988
Q ss_pred chhhH
Q psy12549 281 KAERT 285 (336)
Q Consensus 281 ~~~~~ 285 (336)
+....
T Consensus 88 ~~~~~ 92 (104)
T 1p1t_A 88 EKNKE 92 (104)
T ss_dssp TTHHH
T ss_pred ccchh
Confidence 75544
No 148
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-18 Score=124.39 Aligned_cols=100 Identities=27% Similarity=0.415 Sum_probs=82.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
++|||+|||.++++++|+++|++||+|..+.+... ++|+|||+|.+.++|.+|++.|+|..+.|+.|+|.++.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999865 689999999999999999999999999999999999987743
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCceEEEecCC
Q psy12549 284 RTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314 (336)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 314 (336)
.... ...........+|||+||+
T Consensus 78 ~~~~--------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRF--------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCC--------CSCCCSCCCCSCCCSCCCC
T ss_pred cccC--------CCCCccccCCCceecCCCC
Confidence 2110 0111112335679999987
No 149
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=115.81 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=73.5
Q ss_pred ccceEEEcCCCCCCcHHHHH----HhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 202 LFTNVYIKNFGEDFNDEKLK----EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~----~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
..++|||+|||..+++++|+ ++|++||.|.++.++..... +|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34789999999999999999 99999999999999874444 89999999999999999999999999999999999
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98764
No 150
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.2e-16 Score=115.90 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.|| |..+.++.++ +|.++|||||+|.+.++|.+|+ .||+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4468999999999999999999999997 9999999997 6889999999999999999999 79999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
No 151
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=6.3e-17 Score=115.26 Aligned_cols=79 Identities=25% Similarity=0.470 Sum_probs=72.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCc-cceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGK-SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~-~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
.++|||+|||.++++++|+++|+.||.|..+.+.. .++. ++|+|||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 37899999999999999999999999999999877 2233 79999999999999999999999999999999999987
Q ss_pred cc
Q psy12549 280 KK 281 (336)
Q Consensus 280 ~~ 281 (336)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 152
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=119.14 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL--------SCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLN 177 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~ 177 (336)
....++|||+|||.++++++|+++|+.||.|. .+.++.++ +|.++|||||+|.+.++|.+|++.||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999999 69999985 7889999999999999999999999999999
Q ss_pred CeEEEEeeccCchh
Q psy12549 178 SKIVFVGKFIPRKE 191 (336)
Q Consensus 178 ~~~i~v~~~~~~~~ 191 (336)
|+.|.|.++.+...
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999887654
No 153
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.2e-17 Score=119.15 Aligned_cols=83 Identities=24% Similarity=0.488 Sum_probs=77.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCC---CCccceEEEEEeCCHHHHHHHHHHh-CCceecCEEEEEe
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN---DGKSRGFGFVAYESPEFAEKAVQAW-NGKEVDGKILYVG 276 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~---~~~~~g~afV~F~~~~~a~~a~~~l-~g~~~~g~~l~v~ 276 (336)
...++|||+|||..+++++|+++|+.||.|..+.++.. ++.++|||||+|.+.++|.+|+..| ||..+.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34588999999999999999999999999999999875 7889999999999999999999999 9999999999999
Q ss_pred ecccchh
Q psy12549 277 RAQKKAE 283 (336)
Q Consensus 277 ~~~~~~~ 283 (336)
++.++..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987643
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.1e-17 Score=118.06 Aligned_cols=77 Identities=26% Similarity=0.287 Sum_probs=70.0
Q ss_pred cccceEEEcCCCC-CCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCC--ceecCEEEEEee
Q psy12549 201 KLFTNVYIKNFGE-DFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG--KEVDGKILYVGR 277 (336)
Q Consensus 201 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g--~~~~g~~l~v~~ 277 (336)
.+.++|||+|||+ ++++++|+++|++||.|.++.+++. +++|||+|.+.++|..|++.|++ ..+.|++|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3458899999999 9999999999999999999999864 68999999999999999999886 459999999999
Q ss_pred cccc
Q psy12549 278 AQKK 281 (336)
Q Consensus 278 ~~~~ 281 (336)
+...
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 155
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.1e-16 Score=114.33 Aligned_cols=77 Identities=17% Similarity=0.387 Sum_probs=73.0
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
++|||+|||..+++++|+++|+.||.|..+.+.. .++.++|+|||+|.+.++|.+|+ .+||..+.|+.|+|.++.+.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 7899999999999999999999999999999987 47889999999999999999999 89999999999999998764
No 156
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=119.83 Aligned_cols=82 Identities=34% Similarity=0.586 Sum_probs=76.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||.++++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3458999999999999999999999999999999987 56788999999999999999999999999999999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8764
No 157
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.3e-17 Score=119.33 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=76.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.+.. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 3458999999999999999999999999999999987 47889999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87643
No 158
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=117.52 Aligned_cols=84 Identities=23% Similarity=0.510 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||..+++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999996 788999999999999999999998 99999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 887654
No 159
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=4e-17 Score=112.59 Aligned_cols=74 Identities=26% Similarity=0.448 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
+|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999987 78899999999999999999998 9999999999999764
No 160
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=114.66 Aligned_cols=78 Identities=13% Similarity=0.258 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHh--CCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW--NGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l--~g~~~~g~~l~v~~~ 278 (336)
.+.++|||+|||.++++++|+++|++||.|..+.+++. +|+|||+|.+.++|.+|++.+ ++..+.|++|.|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34578999999999999999999999999999988864 899999999999999999976 578899999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8764
No 161
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=120.36 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=74.9
Q ss_pred ccceEEEcCCCCCC------cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCE-EEE
Q psy12549 202 LFTNVYIKNFGEDF------NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK-ILY 274 (336)
Q Consensus 202 ~~~~l~V~nlp~~~------t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~-~l~ 274 (336)
..++|||+|||..+ ++++|+++|++||.|..+.+.+.+|.++|||||+|.+.++|.+|+..|||..+.|+ .|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 34789999999999 78999999999999999999887889999999999999999999999999999998 999
Q ss_pred Eeecccc
Q psy12549 275 VGRAQKK 281 (336)
Q Consensus 275 v~~~~~~ 281 (336)
|.++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9998765
No 162
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=124.55 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=75.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCC--ceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYG--TITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g--~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
.++|||+|||.++++++|+++|+.|| .|..+.++. .+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 37899999999999999999999999 999999986 58999999999999999999999999999999999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 135 ~~~~ 138 (156)
T 3n9u_C 135 TRQN 138 (156)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 8764
No 163
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=8.7e-17 Score=120.61 Aligned_cols=81 Identities=31% Similarity=0.548 Sum_probs=76.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||.++++++|+++|+.||.|..+.+.. .+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 347899999999999999999999999999999988 6788899999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 164
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=119.06 Aligned_cols=83 Identities=29% Similarity=0.457 Sum_probs=76.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhC------CceecCEE
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWN------GKEVDGKI 272 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~------g~~~~g~~ 272 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|+..+| |..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 3458899999999999999999999999999999987 567889999999999999999999999 99999999
Q ss_pred EEEeecccchh
Q psy12549 273 LYVGRAQKKAE 283 (336)
Q Consensus 273 l~v~~~~~~~~ 283 (336)
|+|.++.++..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987643
No 165
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=117.98 Aligned_cols=84 Identities=26% Similarity=0.450 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 33456899999999999999999999999999999999987 6889999999999999999999975 599999999999
Q ss_pred eccCch
Q psy12549 185 KFIPRK 190 (336)
Q Consensus 185 ~~~~~~ 190 (336)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987764
No 166
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=116.62 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-C-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-Q-GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~-~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
...++|||+|||.++++++|+++|+.|| |..|.++.++ + |.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4458999999999999999999999999 9999999987 3 889999999999999999999 8999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 887654
No 167
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=118.32 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEeeCC-C---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMY---DTFSAFGSILSCKVAQDE-Q---GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI 180 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~~~~~~~~-~---~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~ 180 (336)
...++|||+|||+++++++|+ ++|++||.|..+.++.++ + +.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 445789999999999999999 999999999999999886 2 356699999999999999999999999999999
Q ss_pred EEEeeccCch
Q psy12549 181 VFVGKFIPRK 190 (336)
Q Consensus 181 i~v~~~~~~~ 190 (336)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999988765
No 168
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=122.73 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33456899999999999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred eccCchhh
Q psy12549 185 KFIPRKER 192 (336)
Q Consensus 185 ~~~~~~~~ 192 (336)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 98876543
No 169
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=116.48 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345789999999999999999999999999887777765 7889999999999999999999999999999999999997
Q ss_pred cCc
Q psy12549 187 IPR 189 (336)
Q Consensus 187 ~~~ 189 (336)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 170
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-17 Score=116.10 Aligned_cols=80 Identities=24% Similarity=0.461 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|||..+.|+.+.+.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 345889999999999999999999999999999999986 7889999999999999999999999999999999888665
Q ss_pred c
Q psy12549 187 I 187 (336)
Q Consensus 187 ~ 187 (336)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=117.79 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q psy12549 107 KSGVGNVFIKNLDKSI------DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK- 179 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~- 179 (336)
....++|||+|||..+ ++++|+++|++||.|..+.++ ..+|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 3446799999999999 789999999999999999988 45788999999999999999999999999999998
Q ss_pred EEEEeeccCc
Q psy12549 180 IVFVGKFIPR 189 (336)
Q Consensus 180 ~i~v~~~~~~ 189 (336)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988654
No 172
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=3.4e-16 Score=119.02 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||..+++++|+++|+.||.|..+.+..+++|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 44579999999999999999999999999999999999888899999999999999999999999999999999999987
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 173
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=2.8e-16 Score=111.66 Aligned_cols=77 Identities=23% Similarity=0.520 Sum_probs=70.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|++||.|..+.++. .+|.++|+|||+|.+.++|.+|++ +++..+.|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 3458999999999999999999999999999999986 568899999999999999999996 5889999999999875
No 174
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=8.1e-17 Score=116.46 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35789999999999999999999999999988888765 78899999999999999999999999999999999998865
Q ss_pred C
Q psy12549 188 P 188 (336)
Q Consensus 188 ~ 188 (336)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 175
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=8.9e-17 Score=116.25 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=71.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||.++++++|+++|+.||.|..+.++. .++.++|+|||+|.++++|.+|++.|||..+.|+.|+|.++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 47899999999999999999999999998776665 7788999999999999999999999999999999999998764
No 176
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-16 Score=117.34 Aligned_cols=80 Identities=29% Similarity=0.448 Sum_probs=74.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||..+++++|+++|+.||.|..+.+.. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 447899999999999999999999999999999887 6688899999999999999999999999999999999999875
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
.
T Consensus 94 ~ 94 (114)
T 2do0_A 94 A 94 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 177
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=114.94 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=68.1
Q ss_pred ceEEEcCCCCCC------cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCE-EEEE
Q psy12549 204 TNVYIKNFGEDF------NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK-ILYV 275 (336)
Q Consensus 204 ~~l~V~nlp~~~------t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~-~l~v 275 (336)
++|||+|||..+ ++++|+++|++||+|..+.+.+.+|.++|||||+|.+.++|.+|+..|||..+.|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 78999999999999999998888889999999999999999999999999999999 8876
No 178
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=119.73 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGS---ILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
...++|||+|||.++|+++|+++|+.||. |..+.++.++.|.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45688999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred eccCch
Q psy12549 185 KFIPRK 190 (336)
Q Consensus 185 ~~~~~~ 190 (336)
++.+..
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886544
No 179
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=119.37 Aligned_cols=82 Identities=18% Similarity=0.315 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~--~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
.....++|||+|||.++++++|+++|+.|| |.++.++.++ +|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 334568999999999999999999999999 9999999986 7889999999999999999999 79999999999999
Q ss_pred eeccCc
Q psy12549 184 GKFIPR 189 (336)
Q Consensus 184 ~~~~~~ 189 (336)
.++.++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998765
No 180
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=112.76 Aligned_cols=79 Identities=18% Similarity=0.342 Sum_probs=73.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||.++++++|+++|+.| .|..+.++. .+|.++|+|||+|.+.++|.+|+. +||..+.|+.|.|.++.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 44889999999999999999999999 899999987 678899999999999999999999 999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 181
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=117.79 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
...+|||+|||.++++++|+++|+.| .|..|.++.++.|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34689999999999999999999999 899999999988999999999999999999999 5999999999999987765
Q ss_pred c
Q psy12549 189 R 189 (336)
Q Consensus 189 ~ 189 (336)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 182
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-16 Score=113.27 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEe
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV--NGMLLNSKIVFVG 184 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l--~~~~~~~~~i~v~ 184 (336)
....++|||+|||..+++++|+++|++||.|..+.++++ +|||||+|.+.++|..|++.| ++..+.|++|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 345689999999999999999999999999999988864 789999999999999999976 5678999999999
Q ss_pred eccCchh
Q psy12549 185 KFIPRKE 191 (336)
Q Consensus 185 ~~~~~~~ 191 (336)
++.+...
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9886543
No 183
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=117.63 Aligned_cols=83 Identities=23% Similarity=0.413 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..+++ .+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3456899999999999999999999999999999999986 688999999999999999999999998 89999999999
Q ss_pred ccCch
Q psy12549 186 FIPRK 190 (336)
Q Consensus 186 ~~~~~ 190 (336)
+.+..
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 86543
No 184
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=6.4e-17 Score=148.51 Aligned_cols=83 Identities=17% Similarity=0.418 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||..+|+++|.++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 445799999999999999999999999999999999986 7889999999999999999999999999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7643
No 185
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=1.8e-17 Score=127.71 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=74.4
Q ss_pred eEEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEeccCCCCcCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEE
Q psy12549 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKV 142 (336)
Q Consensus 63 g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~ 142 (336)
|+|+.+|.-+ +.+..+...... ...|....-..............++|||+|||.++|+++|+++|+.|| +..|.+
T Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~-~~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHS--SGLVPRGSHMAS-MTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCc--cccchhcccchh-ccCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 5688888888 666655554332 233332211111111122334457899999999999999999999999 669999
Q ss_pred eeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 143 AQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 143 ~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
+.++.|.++|||||+|.+.++|++|+ .+|+..+.|+.|.|..+.+...
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 99988999999999999999999999 6899999999999988776543
No 186
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.4e-16 Score=120.04 Aligned_cols=79 Identities=32% Similarity=0.532 Sum_probs=73.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||.++++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3458899999999999999999999999999999987 56888999999999999999999999999999999999987
Q ss_pred c
Q psy12549 279 Q 279 (336)
Q Consensus 279 ~ 279 (336)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 187
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=116.32 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=79.3
Q ss_pred CCCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 11 EEGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 11 ~~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
+.....+.++|||+|||.++++++|+++| .++.+..+.+..++ .+|.++|||||+|.+. ++|++|++.+|+..+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~ 80 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP---HTKAPRGFAFVRFHDR--RDAQDAEAAMDGAEL 80 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS---SSCSBCSCEEEEESSS--SHHHHHHHHHSSCCB
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCCCCeEEEEEECCH--HHHHHHHHHcCCCEE
Confidence 34455778999999999999999999999 67788899999887 3688999999999999 999999999999999
Q ss_pred CCeeeEEEeccCCCC
Q psy12549 90 KGRPIRIMWSQRDPS 104 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~ 104 (336)
.|+.|.|.++.....
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 81 DGRELRVQVARYGRR 95 (103)
T ss_dssp TTBCCEEEECSSCCS
T ss_pred CCcEEEEEECCcCCC
Confidence 999999999876543
No 188
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=116.44 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=72.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||+|||..+++++|+++|+.||.|..+.++. .++.++|+|||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 347899999999999999999999999998665554 778899999999999999999999999999999999999987
Q ss_pred cc
Q psy12549 280 KK 281 (336)
Q Consensus 280 ~~ 281 (336)
..
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 189
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=116.62 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=74.1
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||.++++++|+++|+.||.|..+.+.. ++.+++||||+|.+.++|.+|++.||+..+.|+.|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC-SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3458899999999999999999999999999999865 455799999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 190
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=118.52 Aligned_cols=86 Identities=24% Similarity=0.252 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSI-LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|+.||.| ..|.++.+++|.++|||||+|.+.++|.+|+.. |+..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 889999999999999999999999999999996 99999999999999
Q ss_pred ccCchhhh
Q psy12549 186 FIPRKERE 193 (336)
Q Consensus 186 ~~~~~~~~ 193 (336)
+.+.....
T Consensus 91 a~~~~~~~ 98 (114)
T 2cpy_A 91 VTLEDMRE 98 (114)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
Confidence 87665433
No 191
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=116.70 Aligned_cols=81 Identities=19% Similarity=0.376 Sum_probs=75.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCcee-EEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEE----E
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT-SYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI----L 273 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~-~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~----l 273 (336)
...++|||+|||..+++++|+++|+.||.|. .+.++. .++.++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3458999999999999999999999999999 999887 57889999999999999999999999999999999 9
Q ss_pred EEeecccc
Q psy12549 274 YVGRAQKK 281 (336)
Q Consensus 274 ~v~~~~~~ 281 (336)
+|.|+.+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999765
No 192
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=118.94 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=75.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+ .||+..+.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4689999999999999999999999999999999987 5889999999999999999999 8999999999999999876
Q ss_pred chh
Q psy12549 189 RKE 191 (336)
Q Consensus 189 ~~~ 191 (336)
...
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 544
No 193
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=116.86 Aligned_cols=82 Identities=26% Similarity=0.504 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--------CCe
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL--------NSK 179 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~--------~~~ 179 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456899999999999999999999999999999999999889999999999999999999999999998 578
Q ss_pred EEEEeeccCc
Q psy12549 180 IVFVGKFIPR 189 (336)
Q Consensus 180 ~i~v~~~~~~ 189 (336)
+|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8888888754
No 194
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=118.24 Aligned_cols=83 Identities=27% Similarity=0.480 Sum_probs=76.1
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCcee--------EEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT--------SYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~--------~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
...++|||+|||..+++++|+++|+.||.|. .+.++. .++.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3458999999999999999999999999998 588876 678889999999999999999999999999999
Q ss_pred EEEEEeecccchh
Q psy12549 271 KILYVGRAQKKAE 283 (336)
Q Consensus 271 ~~l~v~~~~~~~~ 283 (336)
+.|+|.++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999987644
No 195
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=1.2e-16 Score=122.07 Aligned_cols=82 Identities=27% Similarity=0.407 Sum_probs=76.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
.+.++|||+|||.++++++|+++|+.||+|..+.++. .++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4458899999999999999999999999999999987 56788999999999999999999999999999999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8763
No 196
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=115.58 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEe
Q psy12549 108 SGVGNVFIKNLDK-SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG--MLLNSKIVFVG 184 (336)
Q Consensus 108 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~--~~~~~~~i~v~ 184 (336)
...++|||+|||. ++++++|+++|++||.|.++.++++ ++||||+|.+.++|..|++.|++ ..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3467899999999 9999999999999999999999875 57999999999999999998886 45999999999
Q ss_pred eccCch
Q psy12549 185 KFIPRK 190 (336)
Q Consensus 185 ~~~~~~ 190 (336)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 988654
No 197
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-17 Score=115.21 Aligned_cols=78 Identities=28% Similarity=0.527 Sum_probs=72.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
+.++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.+++.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 347899999999999999999999999999999987 568889999999999999999999999999999999988765
No 198
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.8e-17 Score=112.39 Aligned_cols=75 Identities=25% Similarity=0.454 Sum_probs=70.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
++|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999987 68899999999999999999999988 9999999999875
No 199
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.5e-16 Score=114.83 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=73.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||+|||..+++++|+++|+.|| |..+.++. .++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 448899999999999999999999997 99999987 56889999999999999999999 899999999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 200
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.6e-16 Score=112.75 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||..+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999997 68999999999999999999999 47899999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 887643
No 201
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.3e-16 Score=114.36 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
....++|||+|||.++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345689999999999999999999999999999999654 457899999999999999999999999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 77543
No 202
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=118.80 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=71.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhC--CceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN--GKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~--g~~~~g~~l~v~~~ 278 (336)
.+.++|||+|||+++++++|+++|++||.|.++.++.. +|+|||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 44588999999999999999999999999999999864 8999999999999999999887 46899999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 105 ~~k~~ 109 (119)
T 2ad9_A 105 NHKEL 109 (119)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 87643
No 203
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=120.98 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=74.4
Q ss_pred cccceEEEcCCCCCCcHHHHH----HhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLK----EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~----~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 345789999999999999876 6999999999988754 67889999999999999999999999999999999999
Q ss_pred ecccchhh
Q psy12549 277 RAQKKAER 284 (336)
Q Consensus 277 ~~~~~~~~ 284 (336)
|+..+...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99877543
No 204
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=6.2e-17 Score=111.64 Aligned_cols=73 Identities=26% Similarity=0.543 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 205 ~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
+|||+|||.++++++|+++|+.||+|..+.++. .++.++|+|||+|.+.++|++|++ ++|..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999887 478899999999999999999998 9999999999999875
No 205
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=115.79 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=73.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CC-CccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--ND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~-~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
..++|||+|||..+++++|+++|+.|| |..+.++. .+ +.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 448999999999999999999999999 99999987 33 888999999999999999999 89999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
No 206
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=118.42 Aligned_cols=79 Identities=18% Similarity=0.384 Sum_probs=73.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 47899999999999999999999999999999987 55788999999999999999999 8999999999999999876
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 207
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=2.5e-16 Score=119.71 Aligned_cols=84 Identities=21% Similarity=0.344 Sum_probs=77.2
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 199 KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 199 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
.....++|||+|||..+++++|+++|+.||.|..+.+.. .+|.++|+|||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 334558999999999999999999999999999999987 6778899999999999999999999999999999999999
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97653
No 208
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=6.8e-16 Score=122.25 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999997 6889999999999999999999999999999999999999
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87544
No 209
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.9e-16 Score=114.84 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=72.5
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 199 KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 199 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
.....++|||+|||..+++++|+++|+.||.|.++.+.. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 334458999999999999999999999999999999974 5899999999999999999999999999999999998
Q ss_pred ccc
Q psy12549 279 QKK 281 (336)
Q Consensus 279 ~~~ 281 (336)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 210
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.3e-16 Score=115.88 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=75.5
Q ss_pred cccceEEEcCCCCCCcHHHHH----HhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLK----EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~----~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
.+.++|||+|||.++++++|+ ++|+.||.|..+.+.. +|.++|+|||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345899999999999999999 9999999999998874 56678999999999999999999999999999999999
Q ss_pred ecccchhh
Q psy12549 277 RAQKKAER 284 (336)
Q Consensus 277 ~~~~~~~~ 284 (336)
++.++...
T Consensus 85 ~a~~~~~~ 92 (97)
T 1nu4_A 85 YAKTDSDI 92 (97)
T ss_dssp ECSSCCTH
T ss_pred EccCCCcc
Confidence 99887554
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.9e-16 Score=117.05 Aligned_cols=78 Identities=22% Similarity=0.248 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCC-ceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYG-TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g-~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||+++++++|+++|+.|| .|..+.+.. ..++|||||+|.+.++|++|++.|||..+.|+.|+|.++..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 347899999999999999999999999 899998853 34789999999999999999999999999999999999875
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 212
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=1e-16 Score=121.93 Aligned_cols=78 Identities=18% Similarity=0.374 Sum_probs=73.5
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||.++++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 47899999999999999999999999999999887 57889999999999999999999 7999999999999999875
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 213
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=115.87 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++|+++|+++|+.||.+ .|.++.+++|.++|||||+|.+.++|++|++ +|+..+.++.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 445789999999999999999999999955 9999999999999999999999999999996 79999999999998876
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 214
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=2.1e-16 Score=120.52 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||..+++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 345799999999999999999999999999999999987 8889999999999999999999999999999999999998
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 76543
No 215
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=117.64 Aligned_cols=82 Identities=23% Similarity=0.365 Sum_probs=76.1
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhcc-CCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCce-ecCEEEEEee
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEP-YGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKE-VDGKILYVGR 277 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~-~~g~~l~v~~ 277 (336)
...++|||+|||.++++++|+++|+. ||.|..+.++. .++.++|||||+|.+.++|.+|++.|+|.. +.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34488999999999999999999999 99999999987 578889999999999999999999999999 9999999999
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
+.++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97664
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=117.19 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEe-eCC-CCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGS-ILSCKVA-QDE-QGNSKGYGFVHFETEEAANKSIEKVN--GMLLNSKIVFV 183 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~-~~~-~~~~~g~afV~F~~~~~a~~a~~~l~--~~~~~~~~i~v 183 (336)
..++|||+|||.++++++|+++|+.||. |..+.++ .++ +|.++|||||+|.+.++|.+|+..|+ +..+.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4578999999999999999999999998 9999998 555 67899999999999999999999996 58999999999
Q ss_pred eeccCchhh
Q psy12549 184 GKFIPRKER 192 (336)
Q Consensus 184 ~~~~~~~~~ 192 (336)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876553
No 217
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=115.79 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=70.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCc--eecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGK--EVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~--~~~g~~l~v~~~ 278 (336)
.+.++|||+|||.++++++|+++|++||.|..+.+++. +|+|||+|.+.++|.+|++.|++. .+.|++|+|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34588999999999999999999999999999998863 899999999999999999988654 599999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
..+.
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 8764
No 218
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=115.85 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS-CKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|.. +.++.+.+|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 8888888899999999999999999999997 999999999999887
Q ss_pred cCc
Q psy12549 187 IPR 189 (336)
Q Consensus 187 ~~~ 189 (336)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 219
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=111.24 Aligned_cols=77 Identities=23% Similarity=0.424 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||..+++++|+++|+.||.|..+.+. +++|||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345889999999999999999999999999999997 55999999999999999999999999999999999987
Q ss_pred chh
Q psy12549 281 KAE 283 (336)
Q Consensus 281 ~~~ 283 (336)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 220
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=117.87 Aligned_cols=80 Identities=31% Similarity=0.491 Sum_probs=74.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|++|++.+++ .+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3458999999999999999999999999999999987 5688899999999999999999999998 899999999999
Q ss_pred ccc
Q psy12549 279 QKK 281 (336)
Q Consensus 279 ~~~ 281 (336)
.+.
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 654
No 221
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=8.9e-17 Score=117.34 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=72.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCC---CCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN---DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~---~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
...++|||+|||.++++++|+++|+.|| |.++.+... +|.++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3448999999999999999999999999 999999872 6889999999999999999999 8999999999999999
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98763
No 222
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=7.7e-17 Score=112.89 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEE
Q psy12549 111 GNVFIKNLDKSI------DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK-IVFV 183 (336)
Q Consensus 111 ~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~-~i~v 183 (336)
++|||+|||..+ ++++|+++|++||.|..+.++ ..+|.++|||||+|.+.++|.+|+..|||..+.|+ +|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999987 45788999999999999999999999999999998 7765
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=2e-17 Score=151.81 Aligned_cols=81 Identities=27% Similarity=0.556 Sum_probs=75.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||+|||..+|+++|.++|+.||.|..|.|+. .++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 347899999999999999999999999999999987 578889999999999999999999999999999999999998
Q ss_pred cch
Q psy12549 280 KKA 282 (336)
Q Consensus 280 ~~~ 282 (336)
++.
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 653
No 224
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=3.5e-16 Score=116.00 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=73.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||.++++++|+++|+.||.|..+.+.. .+|.++|||||+|.+.++|.+|+..+ |..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 3448899999999999999999999999999999987 46889999999999999999999975 69999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
No 225
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=6e-16 Score=112.16 Aligned_cols=77 Identities=22% Similarity=0.459 Sum_probs=70.9
Q ss_pred cccccceEEEcCCCC-CCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 199 KAKLFTNVYIKNFGE-DFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 199 ~~~~~~~l~V~nlp~-~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
.....++|||+|||. .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 334558999999998 99999999999999999999984 89999999999999999999999999999999999
Q ss_pred cccc
Q psy12549 278 AQKK 281 (336)
Q Consensus 278 ~~~~ 281 (336)
+.++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 226
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=116.89 Aligned_cols=82 Identities=20% Similarity=0.456 Sum_probs=75.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||+|..+.++. .++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 3458899999999999999999999999999999987 5788999999999999999999998 999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 87754
No 227
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=112.93 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.||.| .++.+.++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999977 56666778899999999999999999999999999999999999988
Q ss_pred Cchh
Q psy12549 188 PRKE 191 (336)
Q Consensus 188 ~~~~ 191 (336)
+...
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 228
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=117.97 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMY----DTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
...++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 345789999999999999876 6999999999887753 5778999999999999999999999999999999999
Q ss_pred eeccCchhhhH
Q psy12549 184 GKFIPRKEREK 194 (336)
Q Consensus 184 ~~~~~~~~~~~ 194 (336)
.++.+......
T Consensus 105 ~~a~~~~~~~~ 115 (127)
T 2a3j_A 105 TFSETPQSQVA 115 (127)
T ss_dssp EECCCCCHHHH
T ss_pred EEccCcchhcc
Confidence 99987765443
No 229
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=4.8e-16 Score=114.77 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=79.3
Q ss_pred CCCccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 11 EEGIIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 11 ~~~~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
+.....+.++|||+|||.++++++|+++| .++.+..++++.++ .+|.++|||||+|.+. ++|++|++.+++..+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~--~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR---FTGMHKGCAFLTYCER--ESALKAQSALHEQKT 80 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS---SSCSCCSEEEEEESSH--HHHHHHHHHHTTTCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCCcceEEEEEECCH--HHHHHHHHHhcCCcc
Confidence 34455678899999999999999999999 77789999999987 3789999999999999 999999999999887
Q ss_pred ---CCeeeEEEeccCCCC
Q psy12549 90 ---KGRPIRIMWSQRDPS 104 (336)
Q Consensus 90 ---~g~~i~v~~~~~~~~ 104 (336)
.|++|.|.++.....
T Consensus 81 ~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 81 LPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CTTCSSCCEEEECCCCSC
T ss_pred cCCCCceEEEEECCcccc
Confidence 899999999877554
No 230
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=5.5e-16 Score=114.61 Aligned_cols=78 Identities=28% Similarity=0.534 Sum_probs=72.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
....++|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3445899999999999999999999999999999997 8899999999999999999999999999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7643
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=115.99 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG--MLLNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~--~~~~~~~i~v~~ 185 (336)
...++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.+++ ..+.|++|.|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 44678999999999999999999999999999999875 78999999999999999998874 689999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 104 a~~k~~ 109 (119)
T 2ad9_A 104 SNHKEL 109 (119)
T ss_dssp CSSSSC
T ss_pred ccCCCC
Confidence 876644
No 232
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=111.77 Aligned_cols=77 Identities=21% Similarity=0.486 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 345889999999999999999999999999999997 78999999999999999999999999999999999987
Q ss_pred chh
Q psy12549 281 KAE 283 (336)
Q Consensus 281 ~~~ 283 (336)
+..
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 233
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=117.16 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=74.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCce-eEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTI-TSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i-~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||.++++++|+++|+.||.| ..+.++. .+|.++|||||+|.+.++|.+|++. |+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 345889999999999999999999999999 8888877 6788999999999999999999987 999999999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8764
No 234
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=121.64 Aligned_cols=83 Identities=28% Similarity=0.515 Sum_probs=76.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||.++++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3448899999999999999999999999999999987 56888999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 235
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=4.9e-17 Score=116.36 Aligned_cols=80 Identities=26% Similarity=0.502 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.+ |.+|+..|||..+.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999999987 6889999999999999 99999999999999999999998776
Q ss_pred hh
Q psy12549 190 KE 191 (336)
Q Consensus 190 ~~ 191 (336)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 236
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=110.88 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
++|||+|||.++++++|+++|++||+|..+.+.. .+|.++|+|||+|.+.++|.+|++.++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999987 468889999999999999999999988 9999999999886
No 237
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=2.5e-16 Score=120.15 Aligned_cols=84 Identities=20% Similarity=0.354 Sum_probs=77.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 3457899999999999999999999999999999987 48888999999999999999999999999999999999999
Q ss_pred ccchhh
Q psy12549 279 QKKAER 284 (336)
Q Consensus 279 ~~~~~~ 284 (336)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=9.3e-16 Score=119.18 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999986 7889999999999999999999999999999999999864
No 239
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=3.6e-16 Score=117.64 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=73.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCc---eeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGT---ITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~---i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
...++|||+|||+++++++|+++|+.||. |..+.++. ..|+++|||||+|.+.++|++|++ +||..+.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34478999999999999999999999999 88998886 558899999999999999999999 99999999999999
Q ss_pred ecccc
Q psy12549 277 RAQKK 281 (336)
Q Consensus 277 ~~~~~ 281 (336)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 240
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=112.94 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceec--CEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD--GKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~--g~~l~v~~~ 278 (336)
.+.++|||+|||..+++++|+++|++||.|..+.+... +++|||+|.+.++|.+|++.|||..+. |+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 34488999999999999999999999999999998754 789999999999999999999999999 999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 241
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=116.59 Aligned_cols=81 Identities=20% Similarity=0.469 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4799999999999999999999999999999999986 688999999999999999999997 99999999999999887
Q ss_pred chh
Q psy12549 189 RKE 191 (336)
Q Consensus 189 ~~~ 191 (336)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 242
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=5.7e-16 Score=117.78 Aligned_cols=80 Identities=19% Similarity=0.376 Sum_probs=75.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
.++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 5799999999999999999999999999999999986 7889999999999999999999 7999999999999999876
Q ss_pred ch
Q psy12549 189 RK 190 (336)
Q Consensus 189 ~~ 190 (336)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 243
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=5.6e-16 Score=114.58 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=70.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++++++|+++|++|| .|..+.+... .++|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 347899999999999999999999999 8999988643 378999999999999999999999999999999999886
Q ss_pred Cc
Q psy12549 188 PR 189 (336)
Q Consensus 188 ~~ 189 (336)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 244
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=113.35 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 345899999999999999999999999998777 55678899999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 245
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=112.62 Aligned_cols=79 Identities=25% Similarity=0.450 Sum_probs=71.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
...++|||+|||..+++++|+++|+.||.| .++. .++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 345899999999999999999999999987 3444 678889999999999999999999999999999999999998
Q ss_pred cch
Q psy12549 280 KKA 282 (336)
Q Consensus 280 ~~~ 282 (336)
++.
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 246
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=122.60 Aligned_cols=82 Identities=15% Similarity=0.330 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILS--CKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGM----LLNSKI 180 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~----~~~~~~ 180 (336)
...++|||+|||.++|+++|+++|+.||.|.. |+++.++ +|.++|||||+|.+. +|.+|+..||+. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45679999999999999999999999999977 9999998 899999999999999 999999999999 999999
Q ss_pred EEEeeccCch
Q psy12549 181 VFVGKFIPRK 190 (336)
Q Consensus 181 i~v~~~~~~~ 190 (336)
|.|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999987754
No 247
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=109.19 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=69.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHh-CCceecCEEEEEeecc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW-NGKEVDGKILYVGRAQ 279 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l-~g~~~~g~~l~v~~~~ 279 (336)
...++|||+|||..+++++|+++|++||.|..+.+.+ ++|+|||+|.+.++|.+|+..| +|..+.|+.|+|.|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3447899999999999999999999999999999986 4899999999999999999999 9999999999999874
No 248
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=113.02 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=71.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecC-----EEEEEe
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG-----KILYVG 276 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g-----~~l~v~ 276 (336)
..++|||+|||.++++++|+++|+.||.|..+.++.. |||||+|.+.++|++|++.|||..+.| +.|.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3488999999999999999999999999999999864 899999999999999999999999999 999999
Q ss_pred ecccch
Q psy12549 277 RAQKKA 282 (336)
Q Consensus 277 ~~~~~~ 282 (336)
++.++.
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998764
No 249
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=2.9e-16 Score=120.54 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=73.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCc---eeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGT---ITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~---i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
...++|||+|||+++|+++|+++|+.||. |..+.++. ..|+++|||||+|.+.++|++|++ +||..++|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34588999999999999999999999999 88898886 558999999999999999999999 99999999999999
Q ss_pred ecccc
Q psy12549 277 RAQKK 281 (336)
Q Consensus 277 ~~~~~ 281 (336)
++.++
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98755
No 250
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=110.77 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=70.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||..+++++|+++|+.||.|..+.+. +++|||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 345889999999999999999999999999999997 55999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 81 ~~ 82 (90)
T 2dnp_A 81 GQ 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 251
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.9e-16 Score=115.86 Aligned_cols=80 Identities=30% Similarity=0.579 Sum_probs=74.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
.++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|+.. ++..+.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 37899999999999999999999999999999987 5688899999999999999999998 99999999999999987
Q ss_pred chh
Q psy12549 281 KAE 283 (336)
Q Consensus 281 ~~~ 283 (336)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 743
No 252
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=117.64 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=70.7
Q ss_pred ccccceEEEcCCCCC-CcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhC--CceecCEEEEEe
Q psy12549 200 AKLFTNVYIKNFGED-FNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN--GKEVDGKILYVG 276 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~-~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~--g~~~~g~~l~v~ 276 (336)
..+.++|||+|||++ +++++|+++|++||.|.++.+.+ ++|||||+|.+.++|.+|++.|+ +..+.|++|+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 344589999999998 99999999999999999999975 48999999999999999999885 456999999999
Q ss_pred ecccch
Q psy12549 277 RAQKKA 282 (336)
Q Consensus 277 ~~~~~~ 282 (336)
++..+.
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 998664
No 253
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=5.8e-17 Score=115.97 Aligned_cols=79 Identities=24% Similarity=0.513 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
++|||+|||.++++++|+++|+.||.|.++.+.. .+|.++|+|||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999999999987 46888999999999999 99999999999999999999999876
Q ss_pred hh
Q psy12549 282 AE 283 (336)
Q Consensus 282 ~~ 283 (336)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 254
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=107.64 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV-NGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l-~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..| ++..+.|+.|.|.++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45579999999999999999999999999999999863 789999999999999999998 999999999999886
Q ss_pred c
Q psy12549 187 I 187 (336)
Q Consensus 187 ~ 187 (336)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 255
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=112.65 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.+|||+|||+++++++|+++|+.| .|..+.++. ..|+++|+|||+|.+.++|.+|+ .+|+..++|+.|.|..+.++
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 689999999999999999999999 899999987 56889999999999999999999 58999999999999888654
No 256
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.1e-16 Score=113.10 Aligned_cols=78 Identities=27% Similarity=0.478 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||..+++++|+++|+.||.|..+.+.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34478999999999999999999999999999999854 89999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 89 ~~ 90 (99)
T 2cpj_A 89 SA 90 (99)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 257
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=109.29 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456899999999999999999999999999999987 5799999999999999999999999999999999988
Q ss_pred Cchh
Q psy12549 188 PRKE 191 (336)
Q Consensus 188 ~~~~ 191 (336)
+...
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 258
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.64 E-value=9.7e-16 Score=121.35 Aligned_cols=83 Identities=27% Similarity=0.325 Sum_probs=76.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..|.++. .++.+++||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3458999999999999999999999999999999987 46888999999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 259
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=4e-16 Score=113.22 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMY----DTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
...++|||+|||.++++++|+ ++|+.||.|..+.+.. +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345789999999999999999 9999999999998874 4567899999999999999999999999999999999
Q ss_pred eeccCchhh
Q psy12549 184 GKFIPRKER 192 (336)
Q Consensus 184 ~~~~~~~~~ 192 (336)
.++.+....
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 999876543
No 260
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.4e-16 Score=113.77 Aligned_cols=81 Identities=22% Similarity=0.505 Sum_probs=74.3
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 199 KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 199 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
.....++|||+|||..+++++|+++|+.||.|..+.+... +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3345589999999999999999999999999999999865 899999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87643
No 261
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=111.78 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=73.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 3447899999999999999999999999999999987 568899999999999999999998 478999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87643
No 262
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=117.12 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGS---ILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
....++|||+|||.++|+++|+++|+.||. |..+.++.++.|.++|||||+|.+.++|.+|+. +++..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345678999999999999999999999998 899999999889999999999999999999999 9999999999999
Q ss_pred eeccCch
Q psy12549 184 GKFIPRK 190 (336)
Q Consensus 184 ~~~~~~~ 190 (336)
.++.+..
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 8887654
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=115.95 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=70.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.++|||+|||..+++++|+++|++||.|..+.+.. ++++|||+|.+.++|.+|+..|||..+.|+.|.|.|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47899999999999999999999999999998874 4789999999999999999999999999999999998754
No 264
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=119.52 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=72.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
....++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34458999999999999999999999999999999887 5688899999999999999999999999999999999988
Q ss_pred c
Q psy12549 278 A 278 (336)
Q Consensus 278 ~ 278 (336)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 265
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.8e-16 Score=114.92 Aligned_cols=80 Identities=31% Similarity=0.536 Sum_probs=74.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCcee--------cCEE
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEV--------DGKI 272 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~--------~g~~ 272 (336)
..++|||+|||..+++++|+++|+.||.|..+.++. .++.++|||||+|.+.++|.+|+..|||..+ .|++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 448899999999999999999999999999999987 5788899999999999999999999999999 5788
Q ss_pred EEEeecccc
Q psy12549 273 LYVGRAQKK 281 (336)
Q Consensus 273 l~v~~~~~~ 281 (336)
|.|.|+.++
T Consensus 104 l~v~~a~p~ 112 (114)
T 1x5o_A 104 LLCKFSGPS 112 (114)
T ss_dssp BEEEECCCS
T ss_pred eeEEccCCC
Confidence 999998864
No 266
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=2.1e-15 Score=109.26 Aligned_cols=77 Identities=18% Similarity=0.403 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 106 RKSGVGNVFIKNLDK-SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
.....++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344568999999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred eccCc
Q psy12549 185 KFIPR 189 (336)
Q Consensus 185 ~~~~~ 189 (336)
++.+.
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98754
No 267
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.6e-16 Score=109.46 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=69.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
+|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|++ +++..+.|+.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999886 68899999999999999999999 4899999999988764
No 268
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=110.84 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEeec
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN--SKIVFVGKF 186 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~--~~~i~v~~~ 186 (336)
..++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.||+..+. |+.|.|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 3478999999999999999999999999999998864 679999999999999999999999999 999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.++.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 269
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=114.09 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=72.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeE-EEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~-~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||+++++++|+++|+.||.|.. +.++. .+|.++|||||+|.++++|.+|+.. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34488999999999999999999999999987 77766 6888999999999999999999997 999999999999988
Q ss_pred ccc
Q psy12549 279 QKK 281 (336)
Q Consensus 279 ~~~ 281 (336)
..+
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 755
No 270
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=1.4e-15 Score=112.43 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 106 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
.....++|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 33456899999999999999999999999999999988 57999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 877643
No 271
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=9.4e-16 Score=113.95 Aligned_cols=94 Identities=27% Similarity=0.417 Sum_probs=78.2
Q ss_pred CCeeeEEEeccCCCC-cCCCCCceEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHH
Q psy12549 90 KGRPIRIMWSQRDPS-LRKSGVGNVFIKNLDKS-IDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167 (336)
Q Consensus 90 ~g~~i~v~~~~~~~~-~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a 167 (336)
.|.++.+..+..... ......++|||+|||.. +++++|+++|+.||.|..+.+ ++|||||+|.+.++|.+|
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A 78 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAA 78 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHH
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHH
Confidence 455666655543322 22334579999999999 999999999999999999998 468999999999999999
Q ss_pred HHHhCCceeCCeEEEEeeccCch
Q psy12549 168 IEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 168 ~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
+..|++..+.|+.|.|.++.+..
T Consensus 79 ~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 79 VLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHTTCEETTEECCEEESCCCC
T ss_pred HHHcCCCEECCeEEEEEECCCCC
Confidence 99999999999999999987543
No 272
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=111.85 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS-----KIVF 182 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~-----~~i~ 182 (336)
...++|||+|||.++++++|+++|+.||.|..+.++.+ |||||+|.+.++|++|++.||+..+.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 34579999999999999999999999999999999876 799999999999999999999999999 9999
Q ss_pred EeeccCch
Q psy12549 183 VGKFIPRK 190 (336)
Q Consensus 183 v~~~~~~~ 190 (336)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99988754
No 273
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=111.74 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=77.6
Q ss_pred cCCCCccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccc
Q psy12549 9 LSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDA 88 (336)
Q Consensus 9 ~~~~~~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~ 88 (336)
.++.....+.++|||+|||.++++++|+++|+.. ..++++.++ .++.++|||||+|.+. ++|++|++.+++..
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~~~~~~---~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~ 78 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDR---ETGSSKGFGFVDFNSE--EDAKAAKEAMEDGE 78 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC--SEEEEEECS---SSCSEEEEEEEECSSH--HHHHHHHHHHTTCE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC--eEEEEEecC---CCCCcCcEEEEEECCH--HHHHHHHHHhCCCe
Confidence 3455566788999999999999999999999743 478888776 3688999999999999 99999999999999
Q ss_pred cCCeeeEEEeccCCCC
Q psy12549 89 LKGRPIRIMWSQRDPS 104 (336)
Q Consensus 89 ~~g~~i~v~~~~~~~~ 104 (336)
+.|+.|.|.++.+...
T Consensus 79 ~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 79 IDGNKVTLDWAKPKGE 94 (102)
T ss_dssp ETTEECEEEECCCCCS
T ss_pred ECCeEEEEEEecCCCC
Confidence 9999999999877654
No 274
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=112.74 Aligned_cols=79 Identities=29% Similarity=0.458 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 34579999999999999999999999999999999876 6899999999999999999999999999999999988
Q ss_pred Cchh
Q psy12549 188 PRKE 191 (336)
Q Consensus 188 ~~~~ 191 (336)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 275
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.6e-16 Score=112.08 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+|||.++++++|+++|+.||.|..+.+.. ++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999883 578999999999999999999999999999999998765
No 276
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-16 Score=112.66 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
....++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3456899999999999999999999999988765 346778999999999999999999999999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 277
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.8e-16 Score=112.59 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG--MLLNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~--~~~~~~~i~v~~ 185 (336)
...++|||+|||.++++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.|++ ..+.|+.|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34578999999999999999999999999999998864 78999999999999999998865 459999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 876543
No 278
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=111.02 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||..+++++|+++|+.||.|..+.+.++ +|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 45679999999999999999999999999999999854 6899999999999999999999999999999999987
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 279
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=8.1e-16 Score=112.90 Aligned_cols=76 Identities=18% Similarity=0.473 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
..++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|++.|||..+.|+.|.|.++.++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34789999999999999999999999999999986 679999999999999999999999999999999999876
Q ss_pred hh
Q psy12549 282 AE 283 (336)
Q Consensus 282 ~~ 283 (336)
..
T Consensus 84 ~~ 85 (103)
T 2dgu_A 84 DQ 85 (103)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 280
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=116.91 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=73.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSI----LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
...+|||+|||.++|+++|+++|+.||.| ..|.++.+++|+++|||||+|.+.++|.+|+.. |+..+.|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45789999999999999999999999975 689999998999999999999999999999995 9999999999998
Q ss_pred eccCch
Q psy12549 185 KFIPRK 190 (336)
Q Consensus 185 ~~~~~~ 190 (336)
.+.+..
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 876543
No 281
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=110.44 Aligned_cols=84 Identities=25% Similarity=0.454 Sum_probs=74.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 105 LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 105 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
......++|||+|||.++++++|+++|+.|+ .+.++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445668999999999999999999999874 56777775 7889999999999999999999999999999999999
Q ss_pred eeccCchh
Q psy12549 184 GKFIPRKE 191 (336)
Q Consensus 184 ~~~~~~~~ 191 (336)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 282
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=107.26 Aligned_cols=78 Identities=21% Similarity=0.440 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
....++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|.+|+..||+..+.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34568999999999999999999999999999999884 39999999999999999999999999999999999
Q ss_pred cCchh
Q psy12549 187 IPRKE 191 (336)
Q Consensus 187 ~~~~~ 191 (336)
.+...
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87644
No 283
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-15 Score=109.69 Aligned_cols=76 Identities=25% Similarity=0.411 Sum_probs=70.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccC--CceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPY--GTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
...++|||+|||..+++++|+++|+.| |.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 345889999999999999999999999 899999875 789999999999999999999999999999999999
Q ss_pred ccch
Q psy12549 279 QKKA 282 (336)
Q Consensus 279 ~~~~ 282 (336)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2cpd_A 87 KPVD 90 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 284
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.4e-16 Score=115.61 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=74.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCc-eeEEEEe-C--CCCccceEEEEEeCCHHHHHHHHHHhC--CceecCEEEEE
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGT-ITSYRVM-N--NDGKSRGFGFVAYESPEFAEKAVQAWN--GKEVDGKILYV 275 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~-i~~~~i~-~--~~~~~~g~afV~F~~~~~a~~a~~~l~--g~~~~g~~l~v 275 (336)
..++|||+|||..+++++|+++|+.||. |..+.++ . .+|.++|||||+|.+.++|.+|+..|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3478999999999999999999999998 9999988 3 556889999999999999999999996 58999999999
Q ss_pred eecccchh
Q psy12549 276 GRAQKKAE 283 (336)
Q Consensus 276 ~~~~~~~~ 283 (336)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987754
No 285
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=3.2e-15 Score=122.29 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=93.2
Q ss_pred hhHHHHHhhc--CccccCCeeeEEEeccCCCCcC-------CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeC
Q psy12549 75 LDTERALDTM--NFDALKGRPIRIMWSQRDPSLR-------KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD 145 (336)
Q Consensus 75 ~~A~~A~~~~--~~~~~~g~~i~v~~~~~~~~~~-------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~ 145 (336)
+.+..|+... ....+.+....+......+.+. ....++|||+|||.++++++|+++|+.||.|..|.++++
T Consensus 65 ~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 144 (193)
T 2voo_A 65 NVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 144 (193)
T ss_dssp HHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC
T ss_pred HHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC
Confidence 6777788866 4556666666676653333221 123479999999999999999999999999999999999
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchh
Q psy12549 146 EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191 (336)
Q Consensus 146 ~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 191 (336)
.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+......
T Consensus 145 ~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 145 LHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYFA 189 (193)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC--
T ss_pred CCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHHH
Confidence 88999999999999999999999855 5699999999998776543
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1e-16 Score=117.35 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
....++|||+|||.++++++|+++|+.||.|.. .++.+. +|.++|||||+|.+.++|.+|++ |++..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999887 444443 67899999999999999999999 999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 877543
No 287
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=110.69 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=73.1
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCee
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRP 93 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~~ 93 (336)
...+.++|||+|||+++||++|+++|+..+++.++++.++ +|+++|||||+|.+. ++|++|++ +|+..+.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~----~g~~~G~afV~F~~~--~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP----DGRVTGEADVEFATH--EDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESS----SSCEEEEEEEECSSS--HHHHHHHT-TSSCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECC----CCCEeeEEEEEECCH--HHHHHHHH-hCCCeECCcE
Confidence 3456788999999999999999999965557799999876 589999999999999 99999996 7999999999
Q ss_pred eEEEeccCCC
Q psy12549 94 IRIMWSQRDP 103 (336)
Q Consensus 94 i~v~~~~~~~ 103 (336)
|.|.++....
T Consensus 84 i~V~~~~~~~ 93 (102)
T 1wez_A 84 VELFLNSTAG 93 (102)
T ss_dssp CEEEEECCCC
T ss_pred EEEEECCCCC
Confidence 9999876544
No 288
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=110.12 Aligned_cols=80 Identities=15% Similarity=0.320 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
....++|||+|||.++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34467999999999999999999999999987 666654 57899999999999999999999999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 289
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=107.21 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|.+|+..||+..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 4568899999999999999999999999999999884 399999999999999999999999999999999988
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 290
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=3.2e-15 Score=112.77 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceE-EEEEeCCHHHHHHHHHHhCCceecC--EEEEEeeccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGF-GFVAYESPEFAEKAVQAWNGKEVDG--KILYVGRAQK 280 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~-afV~F~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~ 280 (336)
..|||+||++.+|+++|+++|++||.|.++.+... .+|+ |||+|.+.++|.+|++.|||..+.| +.|+|.|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 56889999999999999999999999999988752 3677 9999999999999999999999998 9999999987
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
+
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 6
No 291
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.1e-16 Score=111.65 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=71.0
Q ss_pred cccceEEEcCCCC-CCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 201 KLFTNVYIKNFGE-DFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 201 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
.+.++|||+|||. .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3458899999998 99999999999999999999995 8899999999999999999999999999999999997
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++..
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6644
No 292
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=6.9e-16 Score=113.05 Aligned_cols=81 Identities=28% Similarity=0.519 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+|||.++++++|+++|+.||.|..+.++.+++|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 3478999999999999999999999999999999999988999999999999999999999 99999999999988875
Q ss_pred chh
Q psy12549 189 RKE 191 (336)
Q Consensus 189 ~~~ 191 (336)
...
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 293
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=2.2e-15 Score=107.13 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
.++|||+|||.++++++|+++|++| .|..+.+. .++|+|||+|.+.++|.+|++.|||..+.|+.|+|.++...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4789999999999999999999999 99999885 57999999999999999999999999999999999998755
No 294
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=117.94 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSC-KVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+ .+..+.+|.++|||||+|.+.++|.+|+. +|+..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 455899999999999999999999999999884 44455588999999999999999999999 9999999999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.+..
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 295
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-16 Score=112.34 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=70.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|||..+++++|+++|+.||.|. +.++. +.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW--QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3458999999999999999999999999996 55543 46789999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2e-16 Score=121.80 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=72.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCcee
Q psy12549 152 GYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231 (336)
Q Consensus 152 g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~ 231 (336)
++|+.+|..++.+..+...+... ..+...--... ...........++|||+|||+++++++|+++|+.|| +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PV 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CS
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce
Confidence 46778888888777777654333 22222111000 001112223447899999999999999999999999 66
Q ss_pred EEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccchh
Q psy12549 232 SYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283 (336)
Q Consensus 232 ~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 283 (336)
.+.++. .+++++|||||+|.+.++|++|+ .+|+..+.|+.|.|..+.+...
T Consensus 74 ~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 74 RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 888877 56889999999999999999999 6899999999999999887644
No 297
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.9e-16 Score=117.65 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEe-C-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-N-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~-~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
..++|||+|||+++++++|+++|+.||.|..+.++ . .+|.++|||||+|.+.++|.+|+. +||..+.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 44789999999999999999999999999874333 3 788899999999999999999999 99999999999999998
Q ss_pred cch
Q psy12549 280 KKA 282 (336)
Q Consensus 280 ~~~ 282 (336)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 298
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=111.81 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=70.7
Q ss_pred cccccceEEE--cCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCcee-----cCE
Q psy12549 199 KAKLFTNVYI--KNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEV-----DGK 271 (336)
Q Consensus 199 ~~~~~~~l~V--~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~-----~g~ 271 (336)
...+.++||| +||+..+++++|+++|++||.|.++.+.. .+|||||+|.+.++|++|++.|||..+ .|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 3445578999 66999999999999999999999988764 378999999999999999999999998 789
Q ss_pred EEEEeecccch
Q psy12549 272 ILYVGRAQKKA 282 (336)
Q Consensus 272 ~l~v~~~~~~~ 282 (336)
.|.|.|+....
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999987543
No 299
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-16 Score=115.40 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=73.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCc---eeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGT---ITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~---i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
...++|||+|||+++++++|+++|+.||. |..+.++. ..|.++|+|||+|.+.++|.+|+. ++|..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 34578999999999999999999999998 89999887 458899999999999999999999 99999999999999
Q ss_pred ecccc
Q psy12549 277 RAQKK 281 (336)
Q Consensus 277 ~~~~~ 281 (336)
++.++
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98765
No 300
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-16 Score=120.36 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=74.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeE--EEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCc----eecCEE
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS--YRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGK----EVDGKI 272 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~--~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~----~~~g~~ 272 (336)
...++|||+|||+++++++|+++|+.||.|.. ++++. .+|.++|||||+|.+. +|.+|+..|||. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34478999999999999999999999999976 88887 4789999999999999 999999999999 999999
Q ss_pred EEEeecccc
Q psy12549 273 LYVGRAQKK 281 (336)
Q Consensus 273 l~v~~~~~~ 281 (336)
|.|.++.++
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999875
No 301
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=112.57 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=69.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCc
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 189 (336)
.++|||+|||..+++++|+++|++||.|..|.++. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47899999999999999999999999999998874 4789999999999999999999999999999999998653
No 302
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.2e-16 Score=115.01 Aligned_cols=80 Identities=26% Similarity=0.486 Sum_probs=72.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCce----eEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTI----TSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i----~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
+.++|||+|||..+++++|+++|+.||.| ..+++. ++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44899999999999999999999999998 455554 788899999999999999999999999999999999999
Q ss_pred cccchh
Q psy12549 278 AQKKAE 283 (336)
Q Consensus 278 ~~~~~~ 283 (336)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987643
No 303
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=3.1e-16 Score=108.09 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 205 ~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
+|||+|||.++++++|+++|++||+|..+.++. .++.++|+|||+|.+.++|.+|++. ++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999877 5688899999999999999999985 999999999999875
No 304
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=1.8e-15 Score=127.12 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=76.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFG--SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
..++|||+|||.++|+++|+++|+.|| .|..|.|+.++ +|.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999997 899999999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 876543
No 305
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=109.48 Aligned_cols=77 Identities=23% Similarity=0.468 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCc-eeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCC-ceecCEEEEEeecc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGT-ITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG-KEVDGKILYVGRAQ 279 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~-i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g-~~~~g~~l~v~~~~ 279 (336)
..++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 4478999999999999999999999999 6666663 489999999999999999999999 99999999999998
Q ss_pred cchh
Q psy12549 280 KKAE 283 (336)
Q Consensus 280 ~~~~ 283 (336)
++..
T Consensus 82 ~~~~ 85 (93)
T 2cqh_A 82 SKKL 85 (93)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7643
No 306
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=8.4e-15 Score=107.42 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+|||.++++++|+++|+.||.|..+.+++ +||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 457899999999999999999999999999999873 5999999999999999999999999999999999987
Q ss_pred chhh
Q psy12549 189 RKER 192 (336)
Q Consensus 189 ~~~~ 192 (336)
....
T Consensus 83 ~~~~ 86 (103)
T 2dgu_A 83 PDQK 86 (103)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6543
No 307
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=3.3e-15 Score=120.41 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|||..+++++|+++|+.||.|..|.+..+++|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34579999999999999999999999999999999999888899999999999999999999999999999999999987
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=114.46 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCce----eEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEE
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTI----TSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i----~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v 275 (336)
....+|||+|||+++++++|+++|+.||.| ..+.++. .+|+++|+|||+|.+.++|.+|++. |+..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 344789999999999999999999999975 5788776 6888999999999999999999996 999999999999
Q ss_pred eecccc
Q psy12549 276 GRAQKK 281 (336)
Q Consensus 276 ~~~~~~ 281 (336)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 309
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.1e-15 Score=109.09 Aligned_cols=78 Identities=18% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDK-SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||. .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 3468999999998 99999999999999999999984 679999999999999999999999999999999998
Q ss_pred cCchhh
Q psy12549 187 IPRKER 192 (336)
Q Consensus 187 ~~~~~~ 192 (336)
.+....
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 765543
No 310
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=7.2e-16 Score=112.75 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=71.6
Q ss_pred ccccCceeeeecCchhhhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCCe
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGR 92 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g~ 92 (336)
...+.++|||+|||.++++++|+++| .++.+.. .++.+. .+|.++|||||+|.+. ++|++|++ +++..+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~---~~g~~~g~afV~f~~~--~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV---RTGTNRKFGYVDFESA--EDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE---EEETTTTEEEEEESSH--HHHHHHHH-GGGCCBTTB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC---CCCCcCcEEEEEECCH--HHHHHHHh-cCCcEECCc
Confidence 44578899999999999999999999 6666656 555544 4689999999999999 99999999 999999999
Q ss_pred eeEEEeccCCC
Q psy12549 93 PIRIMWSQRDP 103 (336)
Q Consensus 93 ~i~v~~~~~~~ 103 (336)
.|.|.++....
T Consensus 86 ~l~V~~a~~~~ 96 (101)
T 1fj7_A 86 EIKLEKPKGRD 96 (101)
T ss_dssp CCEEECCSCCC
T ss_pred EEEEEEcCCCC
Confidence 99999987654
No 311
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=112.19 Aligned_cols=81 Identities=22% Similarity=0.401 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSI----LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
...++|||+|||.++++++|+++|+.||.| ..+.+. +|.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345899999999999999999999999998 444444 6778999999999999999999999999999999999
Q ss_pred eeccCchh
Q psy12549 184 GKFIPRKE 191 (336)
Q Consensus 184 ~~~~~~~~ 191 (336)
.++.+...
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99887654
No 312
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=107.51 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGS-ILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG-MLLNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~-~~~~~~~i~v~~ 185 (336)
...++|||+|||.++++++|+++|+.||. +..+.+. ++|||||+|.+.++|.+|+..||+ ..+.|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 34578999999999999999999999999 6666653 478999999999999999999999 999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 887643
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=118.86 Aligned_cols=82 Identities=27% Similarity=0.430 Sum_probs=72.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEE--------EEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEE
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSY--------RVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI 272 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~--------~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~ 272 (336)
.+.++|||+|||..+++++|+++|+.||.|..+ .+. .+|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345789999999999999999999999998764 222 46888999999999999999999999999999999
Q ss_pred EEEeecccchh
Q psy12549 273 LYVGRAQKKAE 283 (336)
Q Consensus 273 l~v~~~~~~~~ 283 (336)
|.|.++.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 314
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=105.22 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=64.1
Q ss_pred ceEEEcCCCCCCcHHH----HHHhhccCC-ceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeec
Q psy12549 204 TNVYIKNFGEDFNDEK----LKEMFEPYG-TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~----l~~~f~~~g-~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 278 (336)
+.|||+|||+.+++++ |+++|++|| .|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+|.||
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 3499999999999988 558999994 99877 22 99999999999999999999999999999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
+.+.+
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 87643
No 315
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.3e-15 Score=114.97 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCee--EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL--SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
...++|||+|||+++|+++|+++|+.| .|. .|.++.++.|.++|||||+|.++++|++|++ +++..+.|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 345789999999999999999999999 566 8999999889999999999999999999999 478999999999987
Q ss_pred ccC
Q psy12549 186 FIP 188 (336)
Q Consensus 186 ~~~ 188 (336)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 653
No 316
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=3.4e-15 Score=110.90 Aligned_cols=74 Identities=26% Similarity=0.521 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCC-CcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGED-FNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~-~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||.. +++++|+++|+.||.|..+.+ +++||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3478999999999 999999999999999999998 489999999999999999999999999999999999975
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
.
T Consensus 100 ~ 100 (110)
T 1wf1_A 100 P 100 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 317
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=6.3e-15 Score=104.76 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=69.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+|||.++++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|++.||+..+.|+.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 34789999999999999999999999 99999884 4789999999999999999999999999999999998755
Q ss_pred c
Q psy12549 189 R 189 (336)
Q Consensus 189 ~ 189 (336)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 318
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=109.44 Aligned_cols=83 Identities=8% Similarity=-0.019 Sum_probs=72.5
Q ss_pred CCCccccCceeeeecCchh-hhhhhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCc--
Q psy12549 11 EEGIIIPKHNVATRELSAK-VVEGVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNF-- 86 (336)
Q Consensus 11 ~~~~~~p~~~v~v~~lp~~-~~e~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~-- 86 (336)
.+....|.++|||+|||++ ++|++|+++| .+|.+.++.+.+ ++|||||+|.+. ++|++|++.+++
T Consensus 18 ~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~--~~A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 18 FDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---------MKSQAFIEMETR--EDAMAMVDHCLKKA 86 (112)
T ss_dssp CCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---------TTTEEEEECSSH--HHHHHHHHHHHHSC
T ss_pred ccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCH--HHHHHHHHHhccCC
Confidence 3556789999999999998 9999999999 778899999875 458999999999 999999998865
Q ss_pred cccCCeeeEEEeccCCCC
Q psy12549 87 DALKGRPIRIMWSQRDPS 104 (336)
Q Consensus 87 ~~~~g~~i~v~~~~~~~~ 104 (336)
..+.|++|+|.++.....
T Consensus 87 ~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 87 LWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CCSSSSCCEEEEECSCSS
T ss_pred ceECCEEEEEEECccccc
Confidence 569999999999876544
No 319
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-14 Score=104.82 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAF--GSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
...++|||+|||..+++++|+++|+.| |.|..+.+. +|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446799999999999999999999999 899988765 56999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887643
No 320
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=3.3e-15 Score=116.95 Aligned_cols=77 Identities=14% Similarity=0.257 Sum_probs=70.2
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecC--EEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG--KILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~~ 281 (336)
.+|||+||++.+++++|+++|++||.|.++.+... .++++|||+|.+.++|.+|++.|||..|.| +.|+|.|++++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 56899999999999999999999999999998642 357899999999999999999999999966 99999999876
Q ss_pred h
Q psy12549 282 A 282 (336)
Q Consensus 282 ~ 282 (336)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 3
No 321
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.6e-15 Score=111.03 Aligned_cols=80 Identities=23% Similarity=0.528 Sum_probs=73.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||..+++++|+++|+.||.|..+.++. .+|.++|||||+|.+.++|.+|+. +|..+.|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 347899999999999999999999999999999987 678889999999999999999998 99999999999999987
Q ss_pred chh
Q psy12549 281 KAE 283 (336)
Q Consensus 281 ~~~ 283 (336)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-16 Score=119.71 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=77.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILS--------CKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~ 179 (336)
..++|||+|||.++++++|+++|+.||.|.. +.++.++ ++.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4578999999999999999999999999998 8899885 688999999999999999999999999999999
Q ss_pred EEEEeeccCchhh
Q psy12549 180 IVFVGKFIPRKER 192 (336)
Q Consensus 180 ~i~v~~~~~~~~~ 192 (336)
.|.|.++.+....
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999998876554
No 323
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8.8e-15 Score=109.93 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=67.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceE-EEEEeCCHHHHHHHHHHhCCceecC--EEEEEeeccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGF-GFVAYESPEFAEKAVQAWNGKEVDG--KILYVGRAQK 280 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~-afV~F~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~ 280 (336)
..|||+||++.+++++|+++|++||.|.++.+... .|+ |||+|.+.++|..|++.|||..|.| +.|+|.++.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 34789999999999999999999999999998753 375 9999999999999999999999987 6999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 63
No 324
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.7e-15 Score=106.03 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=67.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 281 (336)
..++|||+|||..+++++|+++|+.||.|.++.+.+.++. ||||+|.+.++|.+|+. |+|..+.|+.|.|.++.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 3478999999999999999999999999999833224443 99999999999999999 9999999999999998765
Q ss_pred h
Q psy12549 282 A 282 (336)
Q Consensus 282 ~ 282 (336)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 325
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-14 Score=104.64 Aligned_cols=76 Identities=30% Similarity=0.467 Sum_probs=69.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|+ ++++++|+++|++||.|..+.+. .++|+|||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 34578999996 89999999999999999999985 4589999999999999999999999999999999999987
Q ss_pred ch
Q psy12549 281 KA 282 (336)
Q Consensus 281 ~~ 282 (336)
+.
T Consensus 87 ~~ 88 (97)
T 1x5p_A 87 QP 88 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 326
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=3.2e-15 Score=125.66 Aligned_cols=81 Identities=25% Similarity=0.332 Sum_probs=75.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCC--ceeEEEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYG--TITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g--~i~~~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
..++|||+|||..+++++|+++|+.|| .|..|.|+. .++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 347899999999999999999999999 999999987 5889999999999999999999999999999999999999
Q ss_pred cccch
Q psy12549 278 AQKKA 282 (336)
Q Consensus 278 ~~~~~ 282 (336)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 327
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=1.2e-14 Score=103.40 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=62.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCcee--cCEEEEEeec
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEV--DGKILYVGRA 278 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~--~g~~l~v~~~ 278 (336)
...++|||+|||+++++++|+++|++||.|.++.++.. ++|||||+|.+.++|.+ ++|..+ .|+.|.|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 34488999999999999999999999999999999863 79999999999999883 566655 5999999999
Q ss_pred ccchh
Q psy12549 279 QKKAE 283 (336)
Q Consensus 279 ~~~~~ 283 (336)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87643
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.5e-15 Score=109.34 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=70.3
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q psy12549 111 GNVFIKNL----DKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET----EEA----ANKSIE--KVNGML 175 (336)
Q Consensus 111 ~~l~v~nl----p~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~----~~~----a~~a~~--~l~~~~ 175 (336)
.+|||+|| |+.+++.+|+++|++||+|.++.++.|+ +|.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999 89999999999996 333 788888 789999
Q ss_pred eCCeEEEEeeccCc
Q psy12549 176 LNSKIVFVGKFIPR 189 (336)
Q Consensus 176 ~~~~~i~v~~~~~~ 189 (336)
++|+.|.|..-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999875543
No 329
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-16 Score=119.17 Aligned_cols=83 Identities=24% Similarity=0.473 Sum_probs=75.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeE--------EEEeC--CCCccceEEEEEeCCHHHHHHHHHHhCCceecCE
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITS--------YRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~--------~~i~~--~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~ 271 (336)
..++|||+|||..+++++|+++|+.||.|.. +.++. .++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3478999999999999999999999999988 77776 5678899999999999999999999999999999
Q ss_pred EEEEeecccchhh
Q psy12549 272 ILYVGRAQKKAER 284 (336)
Q Consensus 272 ~l~v~~~~~~~~~ 284 (336)
.|+|.++.++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999877543
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.3e-15 Score=109.49 Aligned_cols=76 Identities=12% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCceEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-----CCeEE
Q psy12549 109 GVGNVFI--KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL-----NSKIV 181 (336)
Q Consensus 109 ~~~~l~v--~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~-----~~~~i 181 (336)
..++||| +||+.++++++|+++|++||.|..+.++. .+|||||+|.+.++|++|++.|||..+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3578999 77999999999999999999999988764 378999999999999999999999988 68999
Q ss_pred EEeeccCc
Q psy12549 182 FVGKFIPR 189 (336)
Q Consensus 182 ~v~~~~~~ 189 (336)
.|.++...
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99876543
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.7e-14 Score=108.79 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=69.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEeecc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGY-GFVHFETEEAANKSIEKVNGMLLNS--KIVFVGKFI 187 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~-afV~F~~~~~a~~a~~~l~~~~~~~--~~i~v~~~~ 187 (336)
-.|||+||++.+|+++|+++|++||.|.+|.+... .+|+ |||+|.+.++|.+|++.|||..+.| +.|+|.+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 46889999999999999999999999999998864 3567 9999999999999999999999988 999999988
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 753
No 332
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=115.99 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEE------EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSC------KVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV 181 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~------~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i 181 (336)
...++|||+|||.++|+++|+++|+.||.|..+ .+....+|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345789999999999999999999999998764 12222467889999999999999999999999999999999
Q ss_pred EEeeccCchh
Q psy12549 182 FVGKFIPRKE 191 (336)
Q Consensus 182 ~v~~~~~~~~ 191 (336)
.|.++.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976544
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-15 Score=107.01 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEE-EeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYR-VMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~-i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
..++|||+|||..+++++|+++|+.||.|..++ ++.... .+.|||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 347899999999999999999999999999995 655322 33499999999999999999999999999999999988
Q ss_pred c
Q psy12549 281 K 281 (336)
Q Consensus 281 ~ 281 (336)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 7
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-14 Score=103.03 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|| ++++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35679999996 89999999999999999999985 367899999999999999999999999999999999987
Q ss_pred Cchh
Q psy12549 188 PRKE 191 (336)
Q Consensus 188 ~~~~ 191 (336)
+...
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 335
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=6.2e-15 Score=118.79 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=76.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 279 (336)
...++|||+|||..+++++|+++|+.||.|..+.+.. .++.++|+|||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3458999999999999999999999999999999987 568889999999999999999999999999999999999997
Q ss_pred cch
Q psy12549 280 KKA 282 (336)
Q Consensus 280 ~~~ 282 (336)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 336
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=4.3e-15 Score=112.14 Aligned_cols=81 Identities=17% Similarity=0.072 Sum_probs=71.2
Q ss_pred ccccCceeeeecCchhhhhhhHHhhhcccCCc--eEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccCC
Q psy12549 14 IIIPKHNVATRELSAKVVEGVSRSLSSLIDGN--TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKG 91 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~~~e~~l~~~f~~~~~~--~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~g 91 (336)
...+.++|||+|||+++||++|+++|+..++. +++++.++ .|+++|||||+|.++ ++|++|++ +++..+.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~----~GrsrGfaFV~F~~~--e~A~~Al~-~~~~~l~g 110 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDP----EGKITGEAFVQFASQ--ELAEKALG-KHKERIGH 110 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCS----SSSSCSEEEEEESST--THHHHHHT-TTTCCBTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECC----CCCCceEEEEEECCH--HHHHHHHH-HCCCEECC
Confidence 34567889999999999999999999666777 88988877 289999999999999 99999999 57899999
Q ss_pred eeeEEEeccC
Q psy12549 92 RPIRIMWSQR 101 (336)
Q Consensus 92 ~~i~v~~~~~ 101 (336)
+.|.|.++..
T Consensus 111 R~I~V~~a~~ 120 (126)
T 2hgm_A 111 RYIEVFKSSQ 120 (126)
T ss_dssp BCCCCEEECH
T ss_pred EEEEEEECCH
Confidence 9999988754
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=1.2e-14 Score=118.81 Aligned_cols=121 Identities=20% Similarity=0.169 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHh--CCceeCCeEEEEeecc--CchhhhHhhhccccccceEEEcCCCCCCcHHHHHHhhccCCceeEEEE
Q psy12549 160 TEEAANKSIEKV--NGMLLNSKIVFVGKFI--PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV 235 (336)
Q Consensus 160 ~~~~a~~a~~~l--~~~~~~~~~i~v~~~~--~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i 235 (336)
+.+.+..|+... ....+.+....+.... +...... ........++|||+|||.++++++|+++|+.||.|..+.+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~-~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTD-EYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCH-HHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccch-hhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 567788888866 4555555444444432 1111000 0001123478999999999999999999999999999999
Q ss_pred eC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 236 MN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 236 ~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
+. .++.++|+|||+|.+.++|.+|+..+ +..+.|+.|.|.++....
T Consensus 142 ~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 142 RRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp EECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred EECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 87 66888999999999999999999865 569999999999987653
No 338
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=103.89 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
..++|||+|||.++++++|+++|+.||.|..| +.++ +|. ||||+|.+.++|.+|+. |++..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45789999999999999999999999999987 4443 443 99999999999999999 99999999999998876
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 554
No 339
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.4e-14 Score=104.86 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=70.5
Q ss_pred cccceEEEcCCCC-----CCcHHHHHHhhccCCceeEEEEeCC---CCccceEEEEEeCCHHHHHHHHHHhCCceecCEE
Q psy12549 201 KLFTNVYIKNFGE-----DFNDEKLKEMFEPYGTITSYRVMNN---DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI 272 (336)
Q Consensus 201 ~~~~~l~V~nlp~-----~~t~~~l~~~f~~~g~i~~~~i~~~---~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~ 272 (336)
.+.++|+|.|+.. +-++++|++.|++||.|.++.++.. ++.++|+|||+|.+.++|.+|+..|||+.+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3457899999963 2378999999999999999999873 3678999999999999999999999999999999
Q ss_pred EEEeecccc
Q psy12549 273 LYVGRAQKK 281 (336)
Q Consensus 273 l~v~~~~~~ 281 (336)
|+|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998753
No 340
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=1.8e-14 Score=112.74 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEeec
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS--KIVFVGKF 186 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~--~~i~v~~~ 186 (336)
...+|||+||++.+|+++|+++|++||.|.++.+.... ++|||||+|.+.++|..|++.|||..+.| +.|.|.++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34579999999999999999999999999999987643 46899999999999999999999999965 99999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.+..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8763
No 341
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=104.69 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeec
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSC-KVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 186 (336)
...++|||+|||.++++++|+++|+.||.|..+ .++.++. .+.|||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345789999999999999999999999999999 4777652 234999999999999999999999999999999998
Q ss_pred cCc
Q psy12549 187 IPR 189 (336)
Q Consensus 187 ~~~ 189 (336)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 342
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=2.1e-14 Score=102.09 Aligned_cols=74 Identities=15% Similarity=0.372 Sum_probs=62.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEeec
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML--LNSKIVFVGKF 186 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~--~~~~~i~v~~~ 186 (336)
...+|||+|||.++|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 4578999999999999999999999999999999875 68999999999999983 45544 56999999998
Q ss_pred cCch
Q psy12549 187 IPRK 190 (336)
Q Consensus 187 ~~~~ 190 (336)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7764
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.6e-14 Score=102.36 Aligned_cols=71 Identities=20% Similarity=0.453 Sum_probs=66.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccC----C-------ceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPY----G-------TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~----g-------~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
..++|||+|||.++++++|+++|+.| | .|.++.+... +|||||+|.+.++|.+|+ .|||..+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 34889999999999999999999999 8 8999988754 899999999999999999 999999999
Q ss_pred EEEEEee
Q psy12549 271 KILYVGR 277 (336)
Q Consensus 271 ~~l~v~~ 277 (336)
+.|+|++
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999975
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=2.1e-14 Score=101.81 Aligned_cols=71 Identities=21% Similarity=0.543 Sum_probs=65.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAF----G-------SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN 177 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~ 177 (336)
..++|||+|||.++++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+ .||+..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 35789999999999999999999999 8 8999998864 789999999999999999 89999999
Q ss_pred CeEEEEee
Q psy12549 178 SKIVFVGK 185 (336)
Q Consensus 178 ~~~i~v~~ 185 (336)
|+.|.|.+
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999865
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=4.4e-14 Score=103.43 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=71.6
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q psy12549 109 GVGNVFIKNLDK-----SIDNKAMYDTFSAFGSILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV 181 (336)
Q Consensus 109 ~~~~l~v~nlp~-----~~t~~~l~~~f~~~G~v~~~~~~~~~--~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i 181 (336)
.+++|+|+||.. +-++++|++.|++||.|.++.++.++ ++.++|+|||+|.+.++|.+|+..|||..+.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 457899999963 23789999999999999999999986 36789999999999999999999999999999999
Q ss_pred EEeeccCc
Q psy12549 182 FVGKFIPR 189 (336)
Q Consensus 182 ~v~~~~~~ 189 (336)
.+.++.+.
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99998653
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=107.43 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=65.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-C---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-Q---GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~---~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v 183 (336)
...++|||+|||.++++++|+++|++||.|. +.++.+. + |.++|||||+|.+.++|++|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3458899999999999999999999999999 7777765 3 6899999999999999999999883 367777766
Q ss_pred eec
Q psy12549 184 GKF 186 (336)
Q Consensus 184 ~~~ 186 (336)
...
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 347
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-14 Score=107.28 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=69.8
Q ss_pred ceEEEcCC----CCCCcHHHHHHhhccCCceeEEEEeC--CCCccceEEEEEeCC----HHH----HHHHHH--HhCCce
Q psy12549 204 TNVYIKNF----GEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYES----PEF----AEKAVQ--AWNGKE 267 (336)
Q Consensus 204 ~~l~V~nl----p~~~t~~~l~~~f~~~g~i~~~~i~~--~~~~~~g~afV~F~~----~~~----a~~a~~--~l~g~~ 267 (336)
..|+|+|| |+.+++++|+++|+.||+|.++.++. .+|.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 99999999999999999999999887 889999999999996 433 888988 789999
Q ss_pred ecCEEEEEeecccch
Q psy12549 268 VDGKILYVGRAQKKA 282 (336)
Q Consensus 268 ~~g~~l~v~~~~~~~ 282 (336)
++|+.|+|.+-....
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999865543
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.1e-14 Score=108.86 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEE-----EEEee
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI-----LYVGR 277 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~-----l~v~~ 277 (336)
.++|||.|||.++++++|+++|+.||+|..+.++.. |||||+|.+.++|.+|++.|||..+.|+. ++|..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 478999999999999999999999999999999754 89999999999999999999999999988 66666
Q ss_pred ccc
Q psy12549 278 AQK 280 (336)
Q Consensus 278 ~~~ 280 (336)
+.+
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 554
No 349
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=1.5e-14 Score=108.25 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=65.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EEE
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI-----VFV 183 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~-----i~v 183 (336)
..++|||+|||.++++++|+++|+.||.|..+.++.+ |||||+|.+.++|.+|++.||+..+.|+. +.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3578999999999999999999999999999999865 79999999999999999999999999988 666
Q ss_pred eeccCc
Q psy12549 184 GKFIPR 189 (336)
Q Consensus 184 ~~~~~~ 189 (336)
....+.
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 665543
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=7.3e-14 Score=104.90 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=67.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEeecc
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGY-GFVHFETEEAANKSIEKVNGMLLNS--KIVFVGKFI 187 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~-afV~F~~~~~a~~a~~~l~~~~~~~--~~i~v~~~~ 187 (336)
..|||+|||..+++++|+++|++||.|.+|.+... .|+ |||+|.+.++|..|++.|||..+.| +.|.|.++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35789999999999999999999999999999763 275 9999999999999999999999977 699999988
Q ss_pred Cch
Q psy12549 188 PRK 190 (336)
Q Consensus 188 ~~~ 190 (336)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 351
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=99.04 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=64.4
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhhccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q psy12549 111 GNVFIKNLDKSIDNKA----MYDTFSAFG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~----l~~~f~~~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~ 185 (336)
+.|||+|||.++++++ |+++|++|| .|..| +| |+|||.|.+.++|.+|++.|+|..+.|++|.|.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999988 558999994 99988 22 8999999999999999999999999999999999
Q ss_pred ccCchh
Q psy12549 186 FIPRKE 191 (336)
Q Consensus 186 ~~~~~~ 191 (336)
+....+
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 887654
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=4.5e-14 Score=106.42 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=70.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
...++|||+|+ ++++++|+++|+.||.|..+.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 34588999996 69999999999999999999986 4589999999999999999999999999999999999987
Q ss_pred chh
Q psy12549 281 KAE 283 (336)
Q Consensus 281 ~~~ 283 (336)
+..
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 744
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=101.28 Aligned_cols=76 Identities=20% Similarity=0.420 Sum_probs=65.0
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
.++|||+|||.++++++|+++|+.||+|..+.++.. ++|||||+|.+.++|++|... +..+.|+.|.|.++.++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 488999999999999999999999999999998753 689999999999999764321 344589999999998764
Q ss_pred h
Q psy12549 283 E 283 (336)
Q Consensus 283 ~ 283 (336)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.7e-14 Score=101.50 Aligned_cols=77 Identities=16% Similarity=0.425 Sum_probs=66.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
..++|||+|||.++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|++|.. ....+.|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 4588999999999999999999999999999999865 68899999999999986533 23456999999999877
Q ss_pred chh
Q psy12549 189 RKE 191 (336)
Q Consensus 189 ~~~ 191 (336)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=4.3e-14 Score=118.14 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=71.0
Q ss_pred ccccceEEEcCCCCCC---------cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCcee--
Q psy12549 200 AKLFTNVYIKNFGEDF---------NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEV-- 268 (336)
Q Consensus 200 ~~~~~~l~V~nlp~~~---------t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~-- 268 (336)
....++|||+||+..+ ++++|+++|++||+|.+|.++. ++|+|||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3455899999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ----------cCEEEEEeecccchhh
Q psy12549 269 ----------DGKILYVGRAQKKAER 284 (336)
Q Consensus 269 ----------~g~~l~v~~~~~~~~~ 284 (336)
.|+.|.|.||......
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-----
T ss_pred cccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=8.7e-14 Score=104.82 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeecc
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 187 (336)
...++|||+|+ ++++++|+++|+.||.|..|.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 34689999996 69999999999999999999986 367899999999999999999999999999999999988
Q ss_pred Cchhh
Q psy12549 188 PRKER 192 (336)
Q Consensus 188 ~~~~~ 192 (336)
+....
T Consensus 110 ~~~~~ 114 (121)
T 2bz2_A 110 KQPML 114 (121)
T ss_dssp SSCC-
T ss_pred CCCCC
Confidence 76543
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=104.03 Aligned_cols=75 Identities=15% Similarity=0.346 Sum_probs=63.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC--CC---CccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEe
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--ND---GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~--~~---~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~ 276 (336)
..++|||+|||.++++++|+++|++||.|. +.++. .+ |.++|||||+|.+.++|.+|++.++ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 348899999999999999999999999999 66665 33 6889999999999999999999983 3677777665
Q ss_pred ecc
Q psy12549 277 RAQ 279 (336)
Q Consensus 277 ~~~ 279 (336)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.3e-13 Score=101.16 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=68.8
Q ss_pred cccceEEEcCCCCCC-----------cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceec
Q psy12549 201 KLFTNVYIKNFGEDF-----------NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD 269 (336)
Q Consensus 201 ~~~~~l~V~nlp~~~-----------t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~ 269 (336)
.+.++|+|.||.... ++++|+++|++||.|..+.+... .++|+|||+|.+.++|.+|+..|||..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR--HPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT--CTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC--CCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445889999995433 25899999999999999977432 37999999999999999999999999999
Q ss_pred CEEEEEeecccch
Q psy12549 270 GKILYVGRAQKKA 282 (336)
Q Consensus 270 g~~l~v~~~~~~~ 282 (336)
|+.|.|.++.++.
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999998753
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=2.1e-13 Score=99.86 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=68.2
Q ss_pred ccceEEEcCC--CCCC--------cHHHHHHhhccCCceeEEEEeCCC----CccceEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 202 LFTNVYIKNF--GEDF--------NDEKLKEMFEPYGTITSYRVMNND----GKSRGFGFVAYESPEFAEKAVQAWNGKE 267 (336)
Q Consensus 202 ~~~~l~V~nl--p~~~--------t~~~l~~~f~~~g~i~~~~i~~~~----~~~~g~afV~F~~~~~a~~a~~~l~g~~ 267 (336)
+++.|.+.|+ |.++ .+++|++.|++||.|.++.++.+. +.++|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3477889997 4444 337999999999999999998732 3578999999999999999999999999
Q ss_pred ecCEEEEEeecccc
Q psy12549 268 VDGKILYVGRAQKK 281 (336)
Q Consensus 268 ~~g~~l~v~~~~~~ 281 (336)
+.||.|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998654
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=6.9e-14 Score=102.30 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=61.5
Q ss_pred EcCCCCCCcHHHHHHhh------------ccCCceeEEEEeC-CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEE
Q psy12549 208 IKNFGEDFNDEKLKEMF------------EPYGTITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274 (336)
Q Consensus 208 V~nlp~~~t~~~l~~~f------------~~~g~i~~~~i~~-~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~ 274 (336)
+.|||..+++++|++.| ++||.|.++.++. ..+.++|+|||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666666776666555 9999999999987 5577899999999999999999999999999999999
Q ss_pred Eeecc
Q psy12549 275 VGRAQ 279 (336)
Q Consensus 275 v~~~~ 279 (336)
|.|+.
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99863
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=2.6e-13 Score=113.43 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--
Q psy12549 108 SGVGNVFIKNLDKSI---------DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL-- 176 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~---------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~-- 176 (336)
...++|||+|||..+ ++++|+++|++||.|.+|.++. ++|||||+|.+.++|..|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 346899999999998 7999999999999999999985 479999999999999999999999999
Q ss_pred ----------CCeEEEEeeccCchh
Q psy12549 177 ----------NSKIVFVGKFIPRKE 191 (336)
Q Consensus 177 ----------~~~~i~v~~~~~~~~ 191 (336)
.|+.|.|.|+.+...
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC----
T ss_pred cccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=9e-14 Score=101.69 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=64.0
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q psy12549 115 IKNLDKSIDNKAMYDTF------------SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182 (336)
Q Consensus 115 v~nlp~~~t~~~l~~~f------------~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~ 182 (336)
+.|||..+++++|++.| ++||.|.++.++++..+.++|||||+|.++++|.+|+..|||..+.|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777777776666 999999999999988888999999999999999999999999999999999
Q ss_pred Eeec
Q psy12549 183 VGKF 186 (336)
Q Consensus 183 v~~~ 186 (336)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-12 Score=97.07 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 108 SGVGNVFIKNLDKSID-----------NKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL 176 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t-----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~ 176 (336)
...++|+|+||....+ +++|+++|++||.|..+.+ .++ .++|||||+|.+.++|.+|+..|||..+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4468899999954332 5899999999999999966 443 3789999999999999999999999999
Q ss_pred CCeEEEEeeccCch
Q psy12549 177 NSKIVFVGKFIPRK 190 (336)
Q Consensus 177 ~~~~i~v~~~~~~~ 190 (336)
.|+.|.|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987653
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=8.3e-13 Score=96.64 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=69.7
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 109 GVGNVFIKNL--DKSID--------NKAMYDTFSAFGSILSCKVAQDEQ---GNSKGYGFVHFETEEAANKSIEKVNGML 175 (336)
Q Consensus 109 ~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~---~~~~g~afV~F~~~~~a~~a~~~l~~~~ 175 (336)
.++.|.+.|+ |.... +++|++.|++||.|.++.+++++. +.++|+|||+|.++++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467899998 33332 368999999999999999998864 3578999999999999999999999999
Q ss_pred eCCeEEEEeeccCc
Q psy12549 176 LNSKIVFVGKFIPR 189 (336)
Q Consensus 176 ~~~~~i~v~~~~~~ 189 (336)
+.|+.|.+.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987654
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=1.2e-12 Score=97.63 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=68.8
Q ss_pred ccceEEEcCCC--CCC---cHHHHHHhhccCCceeEEEEeCC------CCccceEEEEEeCCHHHHHHHHHHhCCceecC
Q psy12549 202 LFTNVYIKNFG--EDF---NDEKLKEMFEPYGTITSYRVMNN------DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270 (336)
Q Consensus 202 ~~~~l~V~nlp--~~~---t~~~l~~~f~~~g~i~~~~i~~~------~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g 270 (336)
++++|++.|+- .++ .+++|++.|++||.|.++.|+.+ ++.++|++||+|.+.++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 45789999984 222 46899999999999999999872 34578999999999999999999999999999
Q ss_pred EEEEEeecccc
Q psy12549 271 KILYVGRAQKK 281 (336)
Q Consensus 271 ~~l~v~~~~~~ 281 (336)
|.|+|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998653
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=3.4e-12 Score=95.20 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=69.3
Q ss_pred CceEEEcCCCC--CC---CHHHHHHHhhccCCeeEEEEeeCCC-----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q psy12549 110 VGNVFIKNLDK--SI---DNKAMYDTFSAFGSILSCKVAQDEQ-----GNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179 (336)
Q Consensus 110 ~~~l~v~nlp~--~~---t~~~l~~~f~~~G~v~~~~~~~~~~-----~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~ 179 (336)
+++|+++|+-. .+ .+++|++.|++||.|.++.++.++. +.++|++||+|.+.++|.+|+..|||..+.|+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 47899999832 22 3689999999999999999998853 45789999999999999999999999999999
Q ss_pred EEEEeeccCc
Q psy12549 180 IVFVGKFIPR 189 (336)
Q Consensus 180 ~i~v~~~~~~ 189 (336)
.|.+.++...
T Consensus 100 ~i~v~~~~~~ 109 (118)
T 3ue2_A 100 KVVAEVYDQE 109 (118)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEcChH
Confidence 9999987643
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=6e-12 Score=93.15 Aligned_cols=78 Identities=19% Similarity=0.148 Sum_probs=65.6
Q ss_pred ccceEEEcCCCCCC----------cHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCE
Q psy12549 202 LFTNVYIKNFGEDF----------NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271 (336)
Q Consensus 202 ~~~~l~V~nlp~~~----------t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~ 271 (336)
+.+.|.+.|+=..- .+++|++.|++||.|.++.+.+.+ ++|+|||+|.+.++|.+|+..|||+.|+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34678888873221 236899999999999999997643 489999999999999999999999999999
Q ss_pred EEEEeecccc
Q psy12549 272 ILYVGRAQKK 281 (336)
Q Consensus 272 ~l~v~~~~~~ 281 (336)
.|+|.|+...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998644
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.4e-12 Score=90.08 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=58.2
Q ss_pred CCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeecccch
Q psy12549 213 EDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282 (336)
Q Consensus 213 ~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 282 (336)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|..|++.+++ +.|+.|+|.|+.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 568999999999999999999998 46799999999999999999998554 689999999998764
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.24 E-value=1.6e-11 Score=108.15 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=66.2
Q ss_pred ccccceEEEcC--CCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceec---CE--E
Q psy12549 200 AKLFTNVYIKN--FGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD---GK--I 272 (336)
Q Consensus 200 ~~~~~~l~V~n--lp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~---g~--~ 272 (336)
..+..+|||+| |+..+++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 44558899999 578999999999999999999987754 4899999999999999999999999983 44 6
Q ss_pred EEEeecc
Q psy12549 273 LYVGRAQ 279 (336)
Q Consensus 273 l~v~~~~ 279 (336)
|.+.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888874
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.6e-11 Score=86.17 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccCch
Q psy12549 119 DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190 (336)
Q Consensus 119 p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 190 (336)
+..+++++|+++|++||.|..|.++. .++|||||+|.+.++|..|++.+++ +.|++|.|.|+.+..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 36799999999999999999999883 5789999999999999999997444 679999999987664
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.21 E-value=7.7e-11 Score=87.19 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=66.0
Q ss_pred CCceEEEcCCCCCC----------CHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q psy12549 109 GVGNVFIKNLDKSI----------DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178 (336)
Q Consensus 109 ~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~ 178 (336)
.++.|.+.|+=..- .+++|++.|++||.|.++.+.++. .+|+|||+|.+.++|.+|+..|||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35678898883221 235889999999999999987653 48999999999999999999999999999
Q ss_pred eEEEEeeccCch
Q psy12549 179 KIVFVGKFIPRK 190 (336)
Q Consensus 179 ~~i~v~~~~~~~ 190 (336)
+.|.+.++....
T Consensus 83 R~i~v~~~~~~~ 94 (114)
T 3s6e_A 83 KMITAAYVPLPT 94 (114)
T ss_dssp EECEEEEECHHH
T ss_pred EEEEEEEEcHHH
Confidence 999999986543
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=4.2e-11 Score=105.52 Aligned_cols=75 Identities=13% Similarity=0.303 Sum_probs=63.9
Q ss_pred CCCceEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---Ce--E
Q psy12549 108 SGVGNVFIKN--LDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLN---SK--I 180 (336)
Q Consensus 108 ~~~~~l~v~n--lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~---~~--~ 180 (336)
..+.+|||+| |+..+|+++|+++|++||.|.++.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 4457899999 578999999999999999999987754 4789999999999999999999999872 44 5
Q ss_pred EEEeecc
Q psy12549 181 VFVGKFI 187 (336)
Q Consensus 181 i~v~~~~ 187 (336)
+.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777664
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=5.7e-10 Score=77.29 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=60.0
Q ss_pred cceEEEcCCC----CCCcH----HHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEE
Q psy12549 203 FTNVYIKNFG----EDFND----EKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274 (336)
Q Consensus 203 ~~~l~V~nlp----~~~t~----~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~ 274 (336)
..+|+|.-.+ ..+.. .+|.+.|+.||.|..+++.. +.+||+|.+.++|.+|++ |||..+.||.|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~------d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE------DKMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS------SSEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec------CCEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 3677777665 22333 57899999999999999985 338999999999999998 999999999999
Q ss_pred Eeecccc
Q psy12549 275 VGRAQKK 281 (336)
Q Consensus 275 v~~~~~~ 281 (336)
|.++++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=7.8e-10 Score=81.85 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCC-CcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCC-HHHHHHHHHHhC--CceecCEEEEEee
Q psy12549 202 LFTNVYIKNFGED-FNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYES-PEFAEKAVQAWN--GKEVDGKILYVGR 277 (336)
Q Consensus 202 ~~~~l~V~nlp~~-~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~-~~~a~~a~~~l~--g~~~~g~~l~v~~ 277 (336)
..+.|+|+||+.. ++.++|+++|+.||+|.+|.+... ...|||+|.+ +++|..|+..++ +..+.|..++++.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g----~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG----AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT----CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 3477999999999 999999999999999999999864 2359999999 899999999994 7889999999988
Q ss_pred cccchhh
Q psy12549 278 AQKKAER 284 (336)
Q Consensus 278 ~~~~~~~ 284 (336)
.....+.
T Consensus 93 L~GeeE~ 99 (121)
T 1owx_A 93 LEGEVEK 99 (121)
T ss_dssp CCHHHHH
T ss_pred CCCHHHH
Confidence 7765443
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=5.3e-09 Score=72.43 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=61.6
Q ss_pred CCceEEEcCCCC----CC-CH---HHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q psy12549 109 GVGNVFIKNLDK----SI-DN---KAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI 180 (336)
Q Consensus 109 ~~~~l~v~nlp~----~~-t~---~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~ 180 (336)
...||+|.-.|. +. ++ .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |||..+.|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 347788877762 23 32 5789999999999999999873 8999999999999999 9999999999
Q ss_pred EEEeeccCc
Q psy12549 181 VFVGKFIPR 189 (336)
Q Consensus 181 i~v~~~~~~ 189 (336)
|+|+.+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999887653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=7.1e-09 Score=76.69 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=65.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CceeCCeEEE
Q psy12549 107 KSGVGNVFIKNLDKS-IDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFET-EEAANKSIEKVN--GMLLNSKIVF 182 (336)
Q Consensus 107 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~-~~~a~~a~~~l~--~~~~~~~~i~ 182 (336)
-...+-|+|+||+.. ++.++|+++|+.||.|..|.+..++. .|||.|.+ +++|..|+..++ +..+.|..+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 345678999999999 99999999999999999999988743 59999999 899999999994 6788888887
Q ss_pred Eeecc
Q psy12549 183 VGKFI 187 (336)
Q Consensus 183 v~~~~ 187 (336)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76544
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=6.3e-09 Score=72.36 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=60.5
Q ss_pred cccceEEEcCCCCC-----CcH----HHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCE
Q psy12549 201 KLFTNVYIKNFGED-----FND----EKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271 (336)
Q Consensus 201 ~~~~~l~V~nlp~~-----~t~----~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~ 271 (336)
++..+|+|.-++.. +.. .+|.+.|+.||.|..+++... -+||+|.+.++|.+|++ |+|..+.||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d------~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG------QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT------EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC------cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 44478888877632 222 568999999999999999853 39999999999999998 999999999
Q ss_pred EEEEeeccc
Q psy12549 272 ILYVGRAQK 280 (336)
Q Consensus 272 ~l~v~~~~~ 280 (336)
.|+|.+..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999988653
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=8.6e-09 Score=86.08 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=59.8
Q ss_pred CcHHHHHHhhccCCceeEEEEeC------CCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEeeccc
Q psy12549 215 FNDEKLKEMFEPYGTITSYRVMN------NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280 (336)
Q Consensus 215 ~t~~~l~~~f~~~g~i~~~~i~~------~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 280 (336)
-.+++|++.|++||.|.++.+.. .++.++|++||+|.+.++|.+|+..|||+.+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45689999999999999999975 3447899999999999999999999999999999999999764
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=2.4e-08 Score=83.30 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhccCCeeEEEEeeCC-----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeccC
Q psy12549 122 IDNKAMYDTFSAFGSILSCKVAQDE-----QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188 (336)
Q Consensus 122 ~t~~~l~~~f~~~G~v~~~~~~~~~-----~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 188 (336)
-.+++|++.|++||.|.++.++++. +++++|++||+|.+.++|.+|+..|||..+.||.|.+.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4567999999999999999998664 348999999999999999999999999999999999988754
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=6.3e-08 Score=67.36 Aligned_cols=73 Identities=16% Similarity=0.043 Sum_probs=61.0
Q ss_pred ccccCceeeeecCchh-----hhh----hhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhh
Q psy12549 14 IIIPKHNVATRELSAK-----VVE----GVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDT 83 (336)
Q Consensus 14 ~~~p~~~v~v~~lp~~-----~~e----~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~ 83 (336)
...|..||+|.-++++ +-. .+|.+.| .+|.+..++++.++ +||+|.+. ++|.+|++
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~--~sAl~AI~- 76 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADS--HSALSVLD- 76 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCS--HHHHHHHH-
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcCh--HHHHHHHh-
Confidence 4568889999988743 222 4577788 67779999999987 89999999 99999999
Q ss_pred cCccccCCeeeEEEecc
Q psy12549 84 MNFDALKGRPIRIMWSQ 100 (336)
Q Consensus 84 ~~~~~~~g~~i~v~~~~ 100 (336)
+||..+.||.|+|....
T Consensus 77 ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 77 VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp GGGSEETTEEEEEECCC
T ss_pred cCCeeeCCeEEEEeccC
Confidence 99999999999998743
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.9e-07 Score=65.22 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q psy12549 108 SGVGNVFIKNLDKSIDNKAMYDTFSAF-----GSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182 (336)
Q Consensus 108 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~ 182 (336)
...++|-+-|||..++...|+.+.+++ |.+..+.+.+|-. -|+|+|.+...|.+|.-.|+|..+.|++|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 346889999999999999999999999 9999999988743 499999999999999999999999999999
Q ss_pred Eeecc
Q psy12549 183 VGKFI 187 (336)
Q Consensus 183 v~~~~ 187 (336)
+....
T Consensus 94 ~gTv~ 98 (117)
T 2l9w_A 94 SGTIN 98 (117)
T ss_dssp EECHH
T ss_pred ecCHH
Confidence 96543
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.4e-07 Score=63.18 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=65.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccC-----CceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 203 FTNVYIKNFGEDFNDEKLKEMFEPY-----GTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 203 ~~~l~V~nlp~~~t~~~l~~~f~~~-----g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
.++|-+-|||..+++..|+.+.+++ |.+..+.+.++ -+-|+|+|.+...|-+|.-.|+|..|.|+.|++.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC----CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4789999999999999999999999 99999998875 33499999999999999999999999999999965
Q ss_pred cc
Q psy12549 278 AQ 279 (336)
Q Consensus 278 ~~ 279 (336)
..
T Consensus 97 v~ 98 (117)
T 2l9w_A 97 IN 98 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-06 Score=60.83 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=68.7
Q ss_pred cCceeeeecCchhhhhhhHHhhhcc----cC--CceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCccccC
Q psy12549 17 PKHNVATRELSAKVVEGVSRSLSSL----ID--GNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALK 90 (336)
Q Consensus 17 p~~~v~v~~lp~~~~e~~l~~~f~~----~~--~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~~ 90 (336)
-..+|.|.|||+.+.++.|.-+|.. ++ +.++.... +-|+|+|.+. +.|+..++ .....++
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----------~~AvItF~d~--~va~rVL~-k~~H~L~ 72 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----------CGGVLTFREP--ADAERVLA-QADHELH 72 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----------TEEEEEESSH--HHHHHHHT-CSCCBSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----------CcEEEEEcCh--HHHHHHhc-CCcceec
Confidence 4578999999999999999999922 43 34555554 1299999999 99999998 5567888
Q ss_pred CeeeEEEeccCCCCcCCCCCceEEEcCCCCCCC
Q psy12549 91 GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 123 (336)
Q Consensus 91 g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t 123 (336)
+.++.|.+..... .++|+++|||+.++
T Consensus 73 ~~~LsV~P~~~~~------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 73 GAQLSLRPAPPRA------PARLLLQGLPPGTS 99 (104)
T ss_dssp SSBCEEEECCCCC------CCCCCCCSCCCCCC
T ss_pred CeEEEEEcCCCCC------cceEeeecCCCCCC
Confidence 9999998865533 37799999998875
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.2e-05 Score=55.29 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc---c--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSA---F--GSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVG 184 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~---~--G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~~~i~v~ 184 (336)
..+|.|.|||+.++++.|.-+|+. - |.|..+.... +-|+|+|.+.+.|++.++. ..+.+.+..+.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 468999999999999999999987 2 4788777654 3699999999999999983 4788999999997
Q ss_pred eccCchhhhHhhhccccccceEEEcCCCCCCc
Q psy12549 185 KFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216 (336)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 216 (336)
...+... .++++.+|++.++
T Consensus 80 P~~~~~~------------~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPRAP------------ARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCCCC------------CCCCCCSCCCCCC
T ss_pred cCCCCCc------------ceEeeecCCCCCC
Confidence 7555433 6689999998775
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=2e-05 Score=55.79 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=63.7
Q ss_pred cceEEEcCCCCCC-c----HHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecCEEEEEee
Q psy12549 203 FTNVYIKNFGEDF-N----DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGR 277 (336)
Q Consensus 203 ~~~l~V~nlp~~~-t----~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g~~l~v~~ 277 (336)
.++|+|.||+.++ . .+.++++|..|+++......+.- .-..|.|.++++|.+|...||+..+.|+.++|.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3789999998765 2 25778999999999988888632 2378999999999999999999999999999999
Q ss_pred cccc
Q psy12549 278 AQKK 281 (336)
Q Consensus 278 ~~~~ 281 (336)
+.+.
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8844
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.76 E-value=0.00026 Score=49.21 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=60.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCC---C-ccceEEEEEeCCHHHHHHHHHHhCCceecC-----EEEE
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND---G-KSRGFGFVAYESPEFAEKAVQAWNGKEVDG-----KILY 274 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~---~-~~~g~afV~F~~~~~a~~a~~~l~g~~~~g-----~~l~ 274 (336)
++|.|++||..+|++++.+.++....+......... + ..-+.|||.|.+.+++..-.+.++|..|.+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 468999999999999999999999888777776511 1 224679999999999999999999999853 3345
Q ss_pred Eeecc
Q psy12549 275 VGRAQ 279 (336)
Q Consensus 275 v~~~~ 279 (336)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.70 E-value=0.00022 Score=49.56 Aligned_cols=67 Identities=9% Similarity=0.211 Sum_probs=55.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-C-C-CcccEEEEEeCCHHHHHHHHHHhCCceeC
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-Q-G-NSKGYGFVHFETEEAANKSIEKVNGMLLN 177 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~-~-~~~g~afV~F~~~~~a~~a~~~l~~~~~~ 177 (336)
++|.|++||+++|++++.+.+..+..+........+ + + ..-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 469999999999999999999999887776666654 1 1 23356999999999999999999998763
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00085 Score=47.43 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=59.2
Q ss_pred ccCceeeeecCchhh-hh----hhHHhhh-cccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcCcccc
Q psy12549 16 IPKHNVATRELSAKV-VE----GVSRSLS-SLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDAL 89 (336)
Q Consensus 16 ~p~~~v~v~~lp~~~-~e----~~l~~~f-~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~~~~~ 89 (336)
.|+ +|+|.||+..+ .. +.++++| ...+.....+.+.- +-..|.|.++ ++|.+|...+++..+
T Consensus 4 ~pn-tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF---------RRirv~F~~~--~~A~~AR~~Lh~~~f 71 (104)
T 1wey_A 4 GSS-GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF---------KRVRINFSNP--LSAADARLRLHKTEF 71 (104)
T ss_dssp CCC-EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT---------TEEEEECSST--THHHHHHHTSTTSEE
T ss_pred CCc-eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc---------eEEEEEeCCh--HHHHHHHHHhcccee
Confidence 444 49999999877 33 4567788 55567777777754 2389999999 999999999999999
Q ss_pred CCeeeEEEeccC
Q psy12549 90 KGRPIRIMWSQR 101 (336)
Q Consensus 90 ~g~~i~v~~~~~ 101 (336)
+|+.+++-++++
T Consensus 72 ~g~~~r~YFgq~ 83 (104)
T 1wey_A 72 LGKEMKLYFAQT 83 (104)
T ss_dssp TTEECEEECCCC
T ss_pred cCceeEEEecCC
Confidence 999999988764
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00076 Score=49.07 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=59.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCCceecC-EEEEEeecccc
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG-KILYVGRAQKK 281 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g~~~~g-~~l~v~~~~~~ 281 (336)
+.|.|-++|... ...+...|++||.|.+.... ...++..|+|.++.+|++|+.. ||..+.| ..|-|.....+
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCH
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCH
Confidence 779999999886 46788999999999888762 2367899999999999999985 9999985 77777776544
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.45 E-value=0.00077 Score=46.83 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=45.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~ 172 (336)
..+++ ++|+.+...||.++|+.||.+. |..+.|. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999544 6777663 69999999999999999763
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.19 E-value=0.0014 Score=45.73 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=56.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeC---CCCc-cceEEEEEeCCHHHHHHHHHHhCCceecC-----EEEE
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN---NDGK-SRGFGFVAYESPEFAEKAVQAWNGKEVDG-----KILY 274 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~---~~~~-~~g~afV~F~~~~~a~~a~~~l~g~~~~g-----~~l~ 274 (336)
-+|.|+.||+.+|++++.+.++..-++....... ..+. .-..|||.|.+.++...-.+.++|..|.+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 4699999999999999998888776655444433 1111 13469999999999999999999999854 3455
Q ss_pred Eeecc
Q psy12549 275 VGRAQ 279 (336)
Q Consensus 275 v~~~~ 279 (336)
|++|.
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66664
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.0014 Score=45.64 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=45.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~ 172 (336)
.+++ ++|+.+...||.++|+.|| -..|.++.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999999 4457777663 69999999999999999774
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.91 E-value=0.002 Score=47.49 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeE-EEEeC--------------CCC-ccceEEEEEeCCHHHHHHHHHHhCCce
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMN--------------NDG-KSRGFGFVAYESPEFAEKAVQAWNGKE 267 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~-~~i~~--------------~~~-~~~g~afV~F~~~~~a~~a~~~l~g~~ 267 (336)
..|.|-+.|+..+. .+.+.|++||.|.+ +...+ -.. ...+|..|+|+++.+|.+|+.. ||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 56888899877664 57788999999865 22211 011 2467899999999999999985 9999
Q ss_pred ecCEEEEEeecc
Q psy12549 268 VDGKILYVGRAQ 279 (336)
Q Consensus 268 ~~g~~l~v~~~~ 279 (336)
|.|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.84 E-value=0.0014 Score=45.82 Aligned_cols=66 Identities=8% Similarity=0.158 Sum_probs=48.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--CC-CcccEEEEEeCCHHHHHHHHHHhCCcee
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE--QG-NSKGYGFVHFETEEAANKSIEKVNGMLL 176 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~--~~-~~~g~afV~F~~~~~a~~a~~~l~~~~~ 176 (336)
-+|.|+.||+.+|++++.+.+..+-.+........+ .+ ..-.-|||.|.+.++.....+..+|..+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 469999999999999988888776554332222222 11 1224599999999999999999999876
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.01 Score=43.17 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEeecc
Q psy12549 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS-KIVFVGKFI 187 (336)
Q Consensus 109 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~~~~~~-~~i~v~~~~ 187 (336)
..+-|.|-|.|+. ....|...|++||.|.+..... ....-.|.|.+..+|++|+. .||..+.| .-|-|.+..
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3567999999997 4778889999999999877621 24589999999999999999 59999975 666676654
Q ss_pred Cc
Q psy12549 188 PR 189 (336)
Q Consensus 188 ~~ 189 (336)
..
T Consensus 96 d~ 97 (119)
T 1wwh_A 96 DK 97 (119)
T ss_dssp CH
T ss_pred CH
Confidence 33
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.37 E-value=0.0067 Score=42.14 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=43.9
Q ss_pred eeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcC
Q psy12549 21 VATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMN 85 (336)
Q Consensus 21 v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~ 85 (336)
|+.-+.|+.+.-.||.++|+.++...|+.+.|-. |||.|.++ +.|..|+..+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~I~WidDTs----------Alvvf~~~--~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS----------AFVSLSQP--EQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCCCEEEETTE----------EEEECSCH--HHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEEEEEEcCCe----------EEEEecCH--HHHHHHHHhcc
Confidence 5545999999999999999666677777776542 99999999 99999999653
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0058 Score=42.57 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=43.1
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy12549 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN 264 (336)
Q Consensus 205 ~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~ 264 (336)
.|++-++|..+...||.++|+.||. ..|..+. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 3544599999999999999999993 3344443 3459999999999999999764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.67 E-value=0.025 Score=41.71 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=54.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeeC------------C-CC-CcccEEEEEeCCHHHHHHHHHHhCCc
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILS-CKVAQD------------E-QG-NSKGYGFVHFETEEAANKSIEKVNGM 174 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~------------~-~~-~~~g~afV~F~~~~~a~~a~~~l~~~ 174 (336)
...|.|-|.|++ ....+-..|++||.|.+ +...++ + .. .......|+|+++.+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456888899775 45567788999999876 211110 0 00 124577899999999999999 6999
Q ss_pred eeCCeEEEEeecc
Q psy12549 175 LLNSKIVFVGKFI 187 (336)
Q Consensus 175 ~~~~~~i~v~~~~ 187 (336)
.+.|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877777664
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.52 E-value=0.0076 Score=54.93 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=42.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHH
Q psy12549 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQA 262 (336)
Q Consensus 204 ~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~ 262 (336)
++|+|. .|...++.+|.++|++||+|.++......| .||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 789998 799999999999999999999999886433 6999999999998877654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.14 E-value=0.011 Score=53.83 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=42.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~ 170 (336)
.++|+|. .|...++.+|.+.|++||+|..+.+..+. .-||.|+|.+.++++.++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 4689998 79999999999999999999999888653 36999999999999977663
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.07 E-value=2.8 Score=38.83 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=44.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy12549 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG 173 (336)
Q Consensus 111 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~ 173 (336)
..++++ +|..+...+|.++|+.||.+ .|.++.+ ..|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 455565 99999999999999999954 4555543 3699999999999999998753
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=81.94 E-value=9.4 Score=25.67 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=55.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCceeEEEEeCCCCccceEEEEEeCCHHHHHHHHHHhCC-------ceecCEEEE
Q psy12549 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG-------KEVDGKILY 274 (336)
Q Consensus 202 ~~~~l~V~nlp~~~t~~~l~~~f~~~g~i~~~~i~~~~~~~~g~afV~F~~~~~a~~a~~~l~g-------~~~~g~~l~ 274 (336)
..+-+.|-|+|..+-..++.-...-.|---.|..+ .|.|+++|.+.++...|+..|-+ ..+.|....
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 34678899999999888887777777777778776 56699999999999999887622 235677766
Q ss_pred Eeecccch
Q psy12549 275 VGRAQKKA 282 (336)
Q Consensus 275 v~~~~~~~ 282 (336)
|--..+..
T Consensus 85 vistiped 92 (129)
T 4eyt_A 85 VISTIPED 92 (129)
T ss_dssp EECCCCHH
T ss_pred eeecCCch
Confidence 65444443
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.31 E-value=4.5 Score=37.45 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=41.6
Q ss_pred eeeecCchhhhhhhHHhhhcccCCceEEEeCCCCcccccCCceEEEEEeCCcchhhHHHHHhhcC
Q psy12549 21 VATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMN 85 (336)
Q Consensus 21 v~v~~lp~~~~e~~l~~~f~~~~~~~v~~~~~~~~~~~g~~~g~afV~f~~~~~~~A~~A~~~~~ 85 (336)
|++-..|+.+...+|.+.|+..+...|+.+.+. .|||.|.+. +.|..+++.++
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v~V~widdt----------~a~V~~~~~--~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDT----------SAFVSLSQP--EQVQIAVNTSK 494 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCCEEEECSSS----------EEEEECSCH--HHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEEEEEEcCC----------eEEEEECCH--HHHHHHHHHHH
Confidence 444449999999999999966666677655543 299999999 99999999765
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.67 E-value=46 Score=22.31 Aligned_cols=56 Identities=11% Similarity=0.223 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEK 170 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~ 170 (336)
-|+--.+...+..+|++.++. || .|..+..+..+.|.. -|||++....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK--KAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE--EEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce--EEEEEcCCCCcHHHHHHh
Confidence 444556778999999999987 45 467776666554432 499999988877765443
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.21 E-value=40 Score=25.96 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=37.1
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEEeeCCCCCcccEEEEEeCCHHH
Q psy12549 112 NVFIKNLDK-S--------IDNKAMYDTF--SAFGSILSCKVAQDEQGNSKGYGFVHFETEEA 163 (336)
Q Consensus 112 ~l~v~nlp~-~--------~t~~~l~~~f--~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~ 163 (336)
.+.|-|+|. . ....+|.+.| ..|.++. ++....+.| +.|+|.|.|...-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChH
Confidence 477788876 2 4557899977 9998866 666666666 67899999988544
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.36 E-value=14 Score=23.97 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=25.7
Q ss_pred EEEEEeCCcchhhHHHHHhhcCccccCCeeeEEEec
Q psy12549 64 AILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWS 99 (336)
Q Consensus 64 ~afV~f~~~~~~~A~~A~~~~~~~~~~g~~i~v~~~ 99 (336)
|.||+-... .|..+++.+++..+.|+.+.+..+
T Consensus 42 ~s~v~v~~~---~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 42 ASYVEILNG---KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp CEEEEECTT---CHHHHHHHHTTCCC---CCCEEEC
T ss_pred cEEEEECHH---HHHHHHHHhccccCcCceEEEEEC
Confidence 489998887 788999999999999999988765
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.43 E-value=59 Score=25.00 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=33.4
Q ss_pred eEEEcCCCC-C--------CcHHHHHHhh--ccCCceeEEEEeCCCCccceEEEEEeCCH
Q psy12549 205 NVYIKNFGE-D--------FNDEKLKEMF--EPYGTITSYRVMNNDGKSRGFGFVAYESP 253 (336)
Q Consensus 205 ~l~V~nlp~-~--------~t~~~l~~~f--~~~g~i~~~~i~~~~~~~~g~afV~F~~~ 253 (336)
.+.|.|+|. . ....+|++.| +.|.++.-..+.... .++|+|.|.|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~-Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYL-GHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSS-BEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCC-CCceeEEEEecCC
Confidence 355667665 2 2347899977 999987655554444 4589999999874
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.33 E-value=88 Score=20.93 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=52.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC-------ceeCCeEEE
Q psy12549 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNG-------MLLNSKIVF 182 (336)
Q Consensus 110 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~~l~~-------~~~~~~~i~ 182 (336)
.+-+-|-|+|..+-..++.-...-.|---.|.... |.|.+.|.+.++-..|+..|-+ .++.|.-..
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 46688899999999999988888888766777663 4799999999999999987632 234555555
Q ss_pred Ee
Q psy12549 183 VG 184 (336)
Q Consensus 183 v~ 184 (336)
|-
T Consensus 85 vi 86 (129)
T 4eyt_A 85 VI 86 (129)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 409
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=34.63 E-value=60 Score=21.71 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSI 168 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~ 168 (336)
-|+-..+..++..+|++.++. || .|..+.....+.|. .-|||++....+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~--KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE--KKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS--EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc--eEEEEEECCCCcHHHHH
Confidence 445556788999999999987 56 56777666655442 24999998877655443
No 410
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=27.63 E-value=1.3e+02 Score=22.18 Aligned_cols=56 Identities=9% Similarity=0.223 Sum_probs=39.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy12549 112 NVFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 112 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~ 169 (336)
+-|+--++...+..+|++.++. || .|..|..+..+.|.- -|||.+....+|.....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHH
Confidence 3455556778999999998877 45 466776666555432 49999988877765444
No 411
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=26.47 E-value=1.4e+02 Score=22.34 Aligned_cols=55 Identities=7% Similarity=0.212 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~ 169 (336)
-|+--++...+..+|++.++. || .|..|..+..+.|.- -|||.+....+|.....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHH
Confidence 445556778999999998887 45 466776666555432 49999988777766444
No 412
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=20.76 E-value=77 Score=15.87 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=14.9
Q ss_pred cCCCCCCHHHHHHhcCCCCCee
Q psy12549 312 NLDDSIDDERLRKEFTPFGTIT 333 (336)
Q Consensus 312 nlp~~~t~~~l~~~F~~~G~V~ 333 (336)
|-|+++...-=-+-|.+||.++
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 4566666555566788888765
No 413
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.20 E-value=1.4e+02 Score=22.34 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy12549 113 VFIKNLDKSIDNKAMYDTFSA-FG-SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169 (336)
Q Consensus 113 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~g~afV~F~~~~~a~~a~~ 169 (336)
-|+--++...+..+|++.++. || .|..|..+..+.|.- -|||.+....+|.....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKK--KAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSE--EEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCce--EEEEEcCCCCcHHHHHH
Confidence 444455677889999988877 45 466776666554432 49999988877765443
Done!