Your job contains 1 sequence.
>psy12549
MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL
GSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDK
SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI
VFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG
KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERL
NRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12549
(336 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 1026 1.4e-103 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 1017 1.3e-102 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 1017 1.3e-102 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 1017 1.3e-102 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 1016 1.6e-102 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 1015 2.0e-102 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 1015 2.0e-102 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 1014 2.6e-102 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 1012 4.2e-102 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 1012 4.2e-102 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 1012 4.2e-102 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 1010 6.9e-102 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 1010 6.9e-102 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 1010 6.9e-102 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 1009 8.8e-102 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 1009 8.8e-102 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 1009 8.8e-102 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 1009 8.8e-102 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 1009 8.8e-102 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 1009 8.8e-102 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 1009 8.8e-102 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 1009 8.8e-102 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 1005 2.3e-101 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 1002 4.9e-101 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 1002 4.9e-101 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 974 4.5e-98 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 971 9.4e-98 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 970 1.2e-97 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 969 1.5e-97 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 951 1.2e-95 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 951 1.2e-95 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 950 1.6e-95 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 947 3.3e-95 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 929 2.7e-93 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 915 8.1e-92 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 911 2.1e-91 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 911 2.1e-91 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 908 4.5e-91 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 904 1.2e-90 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 904 1.2e-90 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 898 5.1e-90 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 869 6.0e-87 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 841 5.6e-84 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 839 9.1e-84 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 686 1.2e-83 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 836 1.9e-83 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 836 1.9e-83 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 834 3.1e-83 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 833 3.9e-83 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 829 1.0e-82 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 823 4.5e-82 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 789 1.8e-78 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 781 1.3e-77 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 778 2.7e-77 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 770 1.9e-76 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 770 1.9e-76 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 769 2.4e-76 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 763 1.0e-75 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 758 3.5e-75 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 750 2.5e-74 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 734 1.2e-72 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 731 2.5e-72 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 690 5.6e-68 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 672 4.5e-66 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 626 3.4e-61 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 571 2.3e-55 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 571 6.9e-55 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 571 6.9e-55 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 559 4.3e-54 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 550 3.8e-53 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 547 8.0e-53 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 515 9.9e-52 2
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 518 9.5e-50 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 486 2.3e-46 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 486 2.3e-46 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 486 2.3e-46 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 485 3.0e-46 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 483 4.8e-46 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 488 6.5e-46 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 458 2.2e-43 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 444 6.6e-42 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 414 9.9e-39 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 412 1.6e-38 1
UNIPROTKB|H0YBN4 - symbol:PABPC1 "Polyadenylate-binding p... 344 2.6e-31 1
UNIPROTKB|B1ANR1 - symbol:PABPC4 "Polyadenylate-binding p... 326 2.1e-29 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 324 3.4e-29 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 309 1.3e-27 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 271 1.4e-23 1
UNIPROTKB|I3LAI4 - symbol:BTBD9 "Uncharacterized protein"... 250 2.4e-21 1
ZFIN|ZDB-GENE-040704-39 - symbol:btbd9 "BTB (POZ) domain ... 255 5.4e-21 1
UNIPROTKB|Q96Q07 - symbol:BTBD9 "BTB/POZ domain-containin... 250 1.9e-20 1
UNIPROTKB|Q5ZK96 - symbol:BTBD9 "Uncharacterized protein"... 250 2.2e-20 1
UNIPROTKB|E1C497 - symbol:BTBD9 "Uncharacterized protein"... 250 2.2e-20 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 242 3.0e-20 2
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 237 3.3e-19 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 229 4.0e-19 1
UNIPROTKB|A4IFG2 - symbol:BTBD9 "BTB/POZ domain-containin... 244 4.3e-19 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 237 1.0e-18 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 239 1.1e-18 1
RGD|1306975 - symbol:Btbd9 "BTB (POZ) domain containing 9... 241 1.6e-18 1
WARNING: Descriptions of 1063 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 199/275 (72%), Positives = 230/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KGRP+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +D+KLK++F YG S RVM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV++E E A++AV NGKE++GK++YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 401 (146.2 bits), Expect = 6.4e-37, P = 6.4e-37
Identities = 88/231 (38%), Positives = 136/231 (58%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D+ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S +G+ +S +V DE G S+G+GFV FE E A ++++++NG +N K+++VG+ + E
Sbjct: 212 SKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM + G+
Sbjct: 272 RQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 269 (99.8 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 63/236 (26%), Positives = 129/236 (54%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + + +Y+ FS G+ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ + V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DD++L+ F+ +G S +
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIR 221
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 199/275 (72%), Positives = 230/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE LKE+F +G S +VM + +GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GKI++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 417 (151.9 bits), Expect = 7.0e-39, P = 7.0e-39
Identities = 92/231 (39%), Positives = 138/231 (59%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++++ + F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ KI+FVG+ + E
Sbjct: 212 SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 272 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 264 (98.0 bits), Expect = 6.0e-22, P = 6.0e-22
Identities = 62/228 (27%), Positives = 123/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A+KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN + +DDE L++ F+ FG S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 199/275 (72%), Positives = 230/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE LKE+F +G S +VM + +GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GKI++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 417 (151.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 92/231 (39%), Positives = 138/231 (59%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++++ + F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ KI+FVG+ + E
Sbjct: 212 SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 272 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 264 (98.0 bits), Expect = 6.7e-22, P = 6.7e-22
Identities = 62/228 (27%), Positives = 123/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A+KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN + +DDE L++ F+ FG S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 198/275 (72%), Positives = 228/275 (82%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KGRP+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++I+K+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFG+D NDE+LKEMF YG S +VM +D GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGK+++GK ++VGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAK 324
Score = 391 (142.7 bits), Expect = 8.3e-36, P = 8.3e-36
Identities = 94/249 (37%), Positives = 140/249 (56%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA+D MN L R + + +R+ L R NV+IKN ++++ + + F
Sbjct: 152 ERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+G LS KV D+ G SKG+GFV FE E A K+++++NG +N K +FVG+ + E
Sbjct: 212 GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER----TQELKRRFEMLKI 297
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER T + +R +++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRV 391
Query: 298 ER--LNRYQ 304
+N YQ
Sbjct: 392 PNPVINPYQ 400
Score = 273 (101.2 bits), Expect = 6.8e-23, P = 6.8e-23
Identities = 66/236 (27%), Positives = 127/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ + V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A+ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN D ++DERL++ F +G S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVK 221
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 199/275 (72%), Positives = 228/275 (82%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KGRP+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE E+G +AK FTNVYIKNFGED +DEKLKE+F YG S RVM +D GK
Sbjct: 170 VGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A++AV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD +DDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAK 324
Score = 386 (140.9 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 87/231 (37%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ + R NV+IKN + +D++ + + F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+G LS +V D+ G SKG+GFV FE E A ++++++NG +N K V+VG+ + E
Sbjct: 212 CKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQY 382
Score = 265 (98.3 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 63/236 (26%), Positives = 127/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ + V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER E+ R + + N+Y+KN + +DDE+L++ F +G S +
Sbjct: 176 RKEREAEMGARAK----------EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIR 221
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 198/275 (72%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE LKE+F +G S +VM + GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GK+++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 416 (151.5 bits), Expect = 1.2e-38, P = 1.2e-38
Identities = 91/231 (39%), Positives = 138/231 (59%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++++ + F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ K++FVG+ + E
Sbjct: 212 SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 272 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 264 (98.0 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 62/228 (27%), Positives = 123/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A+KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN + +DDE L++ F+ FG S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 198/275 (72%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE LKE+F +G S +VM + GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GK+++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 413 (150.4 bits), Expect = 2.7e-38, P = 2.7e-38
Identities = 91/231 (39%), Positives = 137/231 (59%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++ + + F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ K++FVG+ + E
Sbjct: 212 SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 272 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 265 (98.3 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 62/228 (27%), Positives = 123/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A+KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN + +DDE L++ F+ FG S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVK 221
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
Identities = 198/275 (72%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE LKE+F +G S +VM + GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GK+++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 412 (150.1 bits), Expect = 4.2e-38, P = 4.2e-38
Identities = 91/231 (39%), Positives = 136/231 (58%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++ + + F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG + K++FVG+ + E
Sbjct: 212 SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 272 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 265 (98.3 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 62/228 (27%), Positives = 123/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A+KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN + +DDE L++ F+ FG S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVK 221
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 197/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LKE+F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 403 (146.9 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 92/231 (39%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + + F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 279 (103.3 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 68/236 (28%), Positives = 127/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL++ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 197/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LKE+F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 403 (146.9 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 92/231 (39%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + + F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 279 (103.3 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 68/236 (28%), Positives = 127/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL++ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 197/275 (71%), Positives = 228/275 (82%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++I+K+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LKE F YG S +VM +D GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV++E E A+KAV NGK+++GK ++VGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEFTPFG+ITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAK 324
Score = 397 (144.8 bits), Expect = 1.8e-36, P = 1.8e-36
Identities = 94/249 (37%), Positives = 141/249 (56%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA+D MN L R + + +R+ L R NV+IKN + +D++ + + F
Sbjct: 152 ERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+G+ LS KV D+ G S+G+GFV FE E A K+++ +NG LN K +FVG+ + E
Sbjct: 212 GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+G+ITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER----TQELKRRFEMLKI 297
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER T + +R +++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRV 391
Query: 298 ER--LNRYQ 304
+N YQ
Sbjct: 392 PNPVINPYQ 400
Score = 275 (101.9 bits), Expect = 4.2e-23, P = 4.2e-23
Identities = 67/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A+ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL++ F +G S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVK 221
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 196/275 (71%), Positives = 231/275 (84%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET++AA+++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG KAK FTNVYIKNFG+D +DE+LKE+F YG S +VM + GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A KAV+ NGK+++GK+++VGRAQKK ER ELKRRFE LK ER++
Sbjct: 230 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 411 (149.7 bits), Expect = 4.5e-38, P = 4.5e-38
Identities = 94/231 (40%), Positives = 136/231 (58%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
+RA++ MN L R + + +R+ L + NV+IKN +D++ + + F
Sbjct: 152 DRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S +G LS KV D G SKG+GFV FE E ANK++E++NG +N K+VFVG+ + E
Sbjct: 212 SKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVE 271
Query: 192 REKELG--------EKAKLF--TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL E+ + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 272 RQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 262 (97.3 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 61/228 (26%), Positives = 124/228 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ + A++A++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN D +DDERL++ F+ +G S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVK 221
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 198/275 (72%), Positives = 228/275 (82%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAANK+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE L+E+F +G S +VM + GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GK ++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 403 (146.9 bits), Expect = 3.7e-37, P = 3.7e-37
Identities = 91/230 (39%), Positives = 135/230 (58%)
Query: 79 RALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+A++ MN L R + + +R+ L + NV+IKN + +D++ + + FS
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ K +FVG+ + ER
Sbjct: 213 QFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 266 (98.7 bits), Expect = 3.9e-22, P = 3.9e-22
Identities = 63/228 (27%), Positives = 122/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN + +DDE LR+ F+ FG S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVK 221
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 198/275 (72%), Positives = 228/275 (82%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAANK+IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGK 241
VG+F RKERE ELG KAK FTNVYIKNFGE+ +DE L+E+F +G S +VM + GK
Sbjct: 170 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV+YE E A KAV+ NGKE+ GK ++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Score = 403 (146.9 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 91/230 (39%), Positives = 135/230 (58%)
Query: 79 RALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+A++ MN L R + + +R+ L + NV+IKN + +D++ + + FS
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ K +FVG+ + ER
Sbjct: 213 QFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 266 (98.7 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 63/228 (27%), Positives = 122/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ E A KA++ NG ++ + ++VGR + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN + +DDE LR+ F+ FG S K
Sbjct: 184 GAKAK----------EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVK 221
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 407 (148.3 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 277 (102.6 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 68/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 407 (148.3 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 277 (102.6 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 68/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 407 (148.3 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 277 (102.6 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 68/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 407 (148.3 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 277 (102.6 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 68/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 407 (148.3 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 277 (102.6 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 68/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 407 (148.3 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 273 (101.2 bits), Expect = 6.9e-23, P = 6.9e-23
Identities = 68/236 (28%), Positives = 125/236 (52%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 8 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 65
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 66 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 124
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 125 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 184
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 185 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 244
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 245 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 279
Score = 407 (148.3 bits), Expect = 6.4e-38, P = 6.4e-38
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 107 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 166
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 167 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 226
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 227 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 286
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 287 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 337
Score = 230 (86.0 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 56/187 (29%), Positives = 102/187 (54%)
Query: 150 SKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIK 209
S GY +V+F+ A ++++ +N ++ K V I +R+ L + N++IK
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIK 59
Query: 210 NFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD 269
N + +++ L + F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++
Sbjct: 60 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 270 GKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPF 329
+ ++VGR + + ER EL R + + N+Y+KN + +DDERL+ F F
Sbjct: 120 DRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKF 169
Query: 330 GTITSAK 336
G S K
Sbjct: 170 GPALSVK 176
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 196/275 (71%), Positives = 229/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GK
Sbjct: 170 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 324
Score = 325 (119.5 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 73/189 (38%), Positives = 109/189 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAY 250
S+GFGFV +
Sbjct: 332 SKGFGFVCF 340
Score = 277 (102.6 bits), Expect = 2.2e-23, P = 2.2e-23
Identities = 68/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 193/260 (74%), Positives = 224/260 (86%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSI 137
ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA+YDTFSAFG+I
Sbjct: 106 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 165
Query: 138 LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELG 197
LSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VFVG+F RKERE ELG
Sbjct: 166 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 224
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
KAK FTNVYIKNFGE+ +DE LKE+F +G S +VM + GKS+GFGFV+YE E A
Sbjct: 225 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 284
Query: 257 EKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDS 316
KAV+ NGKE+ GK+++VGRAQKK ER ELKR+FE LK ER++RYQGVNLY+KNLDD+
Sbjct: 285 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 344
Query: 317 IDDERLRKEFTPFGTITSAK 336
IDDE+LRKEF+PFG+ITSAK
Sbjct: 345 IDDEKLRKEFSPFGSITSAK 364
Score = 416 (151.5 bits), Expect = 2.5e-38, P = 2.5e-38
Identities = 91/231 (39%), Positives = 138/231 (59%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++++ + F
Sbjct: 192 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 251
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ K++FVG+ + E
Sbjct: 252 SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 311
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 312 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 371
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 372 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 422
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
Identities = 195/275 (70%), Positives = 230/275 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 54 GYAYVNFQQP--ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 111
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET++AA+++IEK+NGMLLN + VF
Sbjct: 112 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF 170
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG+F RKERE E+G KAK FTNVYIKNFG+D +D++LKE+F+ YG S +VM + GK
Sbjct: 171 VGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGK 230
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV+YE E A KAV+ NG E++GK ++VGRAQKK ER ELKR+FE LK ER++
Sbjct: 231 SRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERIS 290
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 291 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 325
Score = 399 (145.5 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 91/231 (39%), Positives = 132/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI-MWSQRDPSLRKSGVG-----NVFIKNLDKSIDNKAMYDTF 131
+RA++ MN L R + + + R + G NV+IKN +D++ + + F
Sbjct: 153 DRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELF 212
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+G LS KV D G S+G+GFV +E E ANK++E++NG LN K VFVG+ + E
Sbjct: 213 DKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKME 272
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM +G+
Sbjct: 273 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGR 332
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 333 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 383
Score = 255 (94.8 bits), Expect = 6.1e-21, P = 6.1e-21
Identities = 60/228 (26%), Positives = 123/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L I +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 11 MASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 70
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 71 DTMNFDVVKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 124
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+ FV +E+ + A++A++ NG ++ + ++VGR + + ER E+
Sbjct: 125 NILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 184
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + + N+Y+KN D +DD+RL++ F +G S K
Sbjct: 185 GAKAK----------EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVK 222
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
Identities = 192/260 (73%), Positives = 224/260 (86%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSI 137
ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKA+YDTFSAFG+I
Sbjct: 2 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 61
Query: 138 LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELG 197
LSCKV DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VFVG+F RKERE ELG
Sbjct: 62 LSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 120
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFA 256
+AK FTNVYIKNFGED +DE+LKE+F +G S +VM ++ GKS+GFGFV++E E A
Sbjct: 121 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 180
Query: 257 EKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDS 316
+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+ RYQGVNLYVKNLDD
Sbjct: 181 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 240
Query: 317 IDDERLRKEFTPFGTITSAK 336
IDDERLRKEF+PFGTITSAK
Sbjct: 241 IDDERLRKEFSPFGTITSAK 260
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 92/231 (39%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + + F
Sbjct: 88 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF 147
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 148 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 207
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 208 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 267
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 268 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 318
Score = 168 (64.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 46/137 (33%), Positives = 75/137 (54%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ----RDPSLRKSGV-----------G-NVFIKNLD 119
D ++A+D MN L G+ I + +Q R L++ G N+++KNLD
Sbjct: 179 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 238
Query: 120 KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
ID++ + FS FG+I S KV E G SKG+GFV F + E A K++ ++NG ++ +K
Sbjct: 239 DGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 297
Query: 180 IVFVGKFIPRKEREKEL 196
++V ++ER+ L
Sbjct: 298 PLYVALAQRKEERQAHL 314
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 189/275 (68%), Positives = 225/275 (81%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KGRPIRIMWSQRDP LRKSGVGNVFIKNLD+SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G S+GYGFVHFET+EAAN++I+ +NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG F R+ERE E G K FTNVYIKNFGED +D++L+E+F +G S +VM +D G+
Sbjct: 170 VGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGR 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV Y + E A+KAV NGKEV+G+++YVGRAQK+ ER ELKR+FE +K ER+N
Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERIN 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDD+RLRKEF+P+GTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAK 324
Score = 401 (146.2 bits), Expect = 6.0e-37, P = 6.0e-37
Identities = 92/243 (37%), Positives = 139/243 (57%)
Query: 79 RALDTMNFDALKGRPIRI--MWSQRDPSLRKSG----VGNVFIKNLDKSIDNKAMYDTFS 132
RA+ TMN L R + + S+R+ L NV+IKN + +D+K + + FS
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ LS KV D+ G S+G+GFV++ E A K++ ++NG +N ++++VG+ R ER
Sbjct: 213 AFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +D++L++ F PYGTITS +VM G S
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNR 302
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++ M ++ +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY-MQRLATMRA 391
Query: 303 YQG 305
G
Sbjct: 392 MPG 394
Score = 266 (98.7 bits), Expect = 3.9e-22, P = 3.9e-22
Identities = 63/228 (27%), Positives = 125/228 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G I+S +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I +++ G + NV+IKN E +++ L + F +G
Sbjct: 70 DTMNFEVIK------GRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ SRG+GFV +E+ E A +A+Q NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER--EL 181
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ++++ N+Y+KN + +DD+RLR+ F+ FG S K
Sbjct: 182 EYGAKVMEF--------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVK 221
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 187/254 (73%), Positives = 217/254 (85%)
Query: 84 MNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVA 143
MNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA+YDTFSAFG+ILSCKV
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 144 QDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLF 203
DE G SKGY FVHFET+EAANK+IEK+NGMLLN + VFVG+F RKERE ELG KAK F
Sbjct: 61 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQA 262
TNVYIKNFGE+ +DE L+E+F +G S +VM + GKS+GFGFV+YE E A KAV+
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERL 322
NGKE+ GK ++VGRAQKK ER ELKR+FE LK ER++RYQGVNLY+KNLDD+IDDE+L
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 323 RKEFTPFGTITSAK 336
RKEF+PFG+ITSAK
Sbjct: 240 RKEFSPFGSITSAK 253
Score = 403 (146.9 bits), Expect = 1.8e-37, P = 1.8e-37
Identities = 91/230 (39%), Positives = 135/230 (58%)
Query: 79 RALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTFS 132
+A++ MN L R + + +R+ L + NV+IKN + +D++ + + FS
Sbjct: 82 KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFS 141
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ K +FVG+ + ER
Sbjct: 142 QFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVER 201
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+S
Sbjct: 202 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 261
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 311
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 188/271 (69%), Positives = 222/271 (81%)
Query: 67 VQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 126
+ QP D ERALDTMNF+ +KGRPIRIMWSQRDP LRKSGVGNVFIKNLD+SIDNKA
Sbjct: 57 INFQQP--ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKA 114
Query: 127 MYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186
+YDTFSAFG+ILSCKV DE G S+GYGFVHFET EAAN++I+ +NGMLLN + VFVG F
Sbjct: 115 LYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF 173
Query: 187 IPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGF 245
R+ERE E G K FTNVYIKNFGED +D++L+E+F +G S +VM +D G+SRGF
Sbjct: 174 KSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGF 233
Query: 246 GFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQG 305
GFV Y + E A+KAV NGKEV+G+++YVGRAQK+ ER ELKR+FE +K ER+NRYQG
Sbjct: 234 GFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG 293
Query: 306 VNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
VNLYVKNLDD IDD+RLRKEF P+GTITSAK
Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFLPYGTITSAK 324
Score = 401 (146.2 bits), Expect = 6.0e-37, P = 6.0e-37
Identities = 92/243 (37%), Positives = 139/243 (57%)
Query: 79 RALDTMNFDALKGRPIRI--MWSQRDPSLRKSG----VGNVFIKNLDKSIDNKAMYDTFS 132
RA+ TMN L R + + S+R+ L NV+IKN + +D+K + + FS
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ LS KV D+ G S+G+GFV++ E A K++ ++NG +N ++++VG+ R ER
Sbjct: 213 AFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +D++L++ F PYGTITS +VM G S
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNR 302
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++ M ++ +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY-MQRLATMRA 391
Query: 303 YQG 305
G
Sbjct: 392 MPG 394
Score = 260 (96.6 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 63/228 (27%), Positives = 124/228 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ +++I +L + +Y+ FS G I+S +V +D S Y +++F+ A +++
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I +++ G + NV+IKN E +++ L + F +G
Sbjct: 70 DTMNFEVIK------GRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ SRG+GFV +E+ E A +A+Q NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRER--EL 181
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ++++ N+Y+KN + +DD+RLR+ F+ FG S K
Sbjct: 182 EYGAKVMEF--------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVK 221
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 189/275 (68%), Positives = 222/275 (80%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KGRPIRIMWSQRDP LRKSGVGNVFIKNLD SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG ILSCKV DE G S+GYGFVHFET+EAAN++I+ +NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGK 241
VG F R+ERE E G K FTNVYIKNFGED +D++LKE+F +G S +VM +N G+
Sbjct: 170 VGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGR 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV Y + E A+KAV NGKEV+G+++YVGRAQK+ ER ELKR+FE +K ER+N
Sbjct: 230 SRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERIN 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDD+RLRKEF+P+GTITS K
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTK 324
Score = 400 (145.9 bits), Expect = 7.8e-37, P = 7.8e-37
Identities = 93/243 (38%), Positives = 138/243 (56%)
Query: 79 RALDTMNFDALKGRPIRI--MWSQRDPSLRKSG----VGNVFIKNLDKSIDNKAMYDTFS 132
RA+ TMN L R + + S+R+ L NV+IKN + +D+K + + FS
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AFG+ LS KV D G S+G+GFV++ E A K++ ++NG +N ++V+VG+ R ER
Sbjct: 213 AFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +D++L++ F PYGTITS +VM G S
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNR 302
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++ M ++ +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY-MQRLATMRA 391
Query: 303 YQG 305
G
Sbjct: 392 MPG 394
Score = 259 (96.2 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 62/228 (27%), Positives = 125/228 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ +++I +L + +Y+ FS G I+S +V +D S GY +++F+ A +++
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I +++ G + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFEVIK------GRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ SRG+GFV +E+ E A +A+Q NG ++ + ++VG + + ER EL
Sbjct: 124 DILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER--EL 181
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ++++ N+Y+KN + +DD+RL++ F+ FG S K
Sbjct: 182 EYGAKVMEF--------TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVK 221
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 183/262 (69%), Positives = 217/262 (82%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E ALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+F+KNLDKSI+NKA+YDT SAFG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSC V DE G SKGYGFVHFET EAA ++I+K+NGMLLN + VFVG+F RKERE E
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
LG +AK F NVYIKNFGED +DE+LK++F +G S +VM ++ GKS+GFGFV++E E
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+KAV NGKE++GK +YVGRAQKK ER ELKR FE +K +R+ RYQ VNLYVKNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDDERLRK F+PFGTITSAK
Sbjct: 303 DGIDDERLRKAFSPFGTITSAK 324
Score = 407 (148.3 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 95/231 (41%), Positives = 133/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA+ MN L GR + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELG---EKAKL-------FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL E+ K N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Score = 264 (98.0 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 65/236 (27%), Positives = 122/236 (51%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS ++++ +L + +Y+ FS G ILS ++ +D S Y +V+F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
+ A +++ +N ++ K V I +R+ L + N+++KN + N++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFVKNLDKSINNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ +G I S V+ ++ S+G+GFV +E+ E AE+A++ NG ++G+ ++VG+ +
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 183/262 (69%), Positives = 217/262 (82%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E ALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+F+KNLDKSI+NKA+YDT SAFG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSC V DE G SKGYGFVHFET EAA ++I+K+NGMLLN + VFVG+F RKERE E
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
LG +AK F NVYIKNFGED +DE+LK++F +G S +VM ++ GKS+GFGFV++E E
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+KAV NGKE++GK +YVGRAQKK ER ELKR FE +K +R+ RYQ VNLYVKNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDDERLRK F+PFGTITSAK
Sbjct: 303 DGIDDERLRKAFSPFGTITSAK 324
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 79/195 (40%), Positives = 114/195 (58%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA+ MN L GR + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 152 ERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 192 REKELG---EKAKL-------FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL E+ K N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGR 331
Query: 242 SRGFGFVAYESPEFA 256
S+GFGFV + SPE A
Sbjct: 332 SKGFGFVCFSSPEEA 346
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 65/236 (27%), Positives = 122/236 (51%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS ++++ +L + +Y+ FS G ILS ++ +D S Y +V+F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
+ A +++ +N ++ K V I +R+ L + N+++KN + N++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFVKNLDKSINNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ +G I S V+ ++ S+G+GFV +E+ E AE+A++ NG ++G+ ++VG+ +
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 183/275 (66%), Positives = 223/275 (81%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KGRP+RIMWSQRDP LRKSGVGNVFIKNLD SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G S+G+GFVHFET+EAA ++I+ +NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGK 241
VG F RKERE E G +A FTNVYIKNFG+D +D +L+E+F +G S +VM ++ G+
Sbjct: 170 VGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGR 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV +E E A+KAV NGKE++G+++YVGRAQK+ ER ELKR+FE +K ER++
Sbjct: 230 SKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVS 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+P+GTITSAK
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAK 324
Score = 399 (145.5 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 94/243 (38%), Positives = 133/243 (54%)
Query: 79 RALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTFS 132
RA+ TMN L R + + +R+ R NV+IKN +D+ + + FS
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFS 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
FG LS KV D G SKG+GFV+FE E A K++ +NG +N ++V+VG+ R ER
Sbjct: 213 RFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +DE+L++ F PYGTITS +VM G S
Sbjct: 273 QSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNR 302
+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++ M ++ +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY-MQRLATMRA 391
Query: 303 YQG 305
G
Sbjct: 392 LPG 394
Score = 264 (98.0 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 63/228 (27%), Positives = 119/228 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ + V + +++ G + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFEVIKGRPVRI------MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ SRG GFV +E+ E A +A+Q NG ++ + ++VG + + ER E
Sbjct: 124 NILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEF 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + N+Y+KN D +DD RLR+ F+ FG S K
Sbjct: 184 GAR----------AMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVK 221
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 186/275 (67%), Positives = 220/275 (80%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D E ALDTMN++ +KGRPIRIMWSQRDP LRKSGVGN+FIKN+D+SI
Sbjct: 53 GYAYINFQQP--ADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAAN++IE +NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG F RKERE E+G KA FTNVYIKNFGED + EKLK +F +G S VM ++ G+
Sbjct: 170 VGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGR 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV + + A +AV NGKE++G++LYVGRAQK+ ER ELKR+FE +K ER+
Sbjct: 230 SRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQ 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSIDDE+LRKEF P+GTITSAK
Sbjct: 290 RYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAK 324
Score = 391 (142.7 bits), Expect = 7.3e-36, P = 7.3e-36
Identities = 90/230 (39%), Positives = 133/230 (57%)
Query: 79 RALDTMNFDALKGRPIRI----MWSQRDPSLRKSGVG--NVFIKNLDKSIDNKAMYDTFS 132
RA++TMN L R + + +R+ + V NV+IKN + ID++ + + F+
Sbjct: 153 RAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFT 212
Query: 133 AFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
FG LS V DE+G S+G+GFV+F A +++ ++NG LN ++++VG+ R ER
Sbjct: 213 EFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLER 272
Query: 193 EKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS 242
+ EL K + N+Y+KN + +DEKL++ F PYGTITS +VM + G S
Sbjct: 273 QGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHS 332
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
RGFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 333 RGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Score = 245 (91.3 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 59/226 (26%), Positives = 118/226 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y FS G I+S +V +D S GY +++F+ A ++
Sbjct: 10 LASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I +++ G + N++IKN E +++ L + F +G
Sbjct: 70 DTMNYEVIK------GRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G+GFV +E+ E A +A++ NG ++ + ++VG + + ER E+
Sbjct: 124 NILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEM 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+ +E N+Y+KN + ID E+L+ FT FG S
Sbjct: 184 GAK----AVEF------TNVYIKNFGEDIDSEKLKNIFTEFGKTLS 219
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 39/143 (27%), Positives = 69/143 (48%)
Query: 197 GEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPE 254
G A ++Y+ + D + L + F P G I S RV + +S G+ ++ ++ P
Sbjct: 4 GGPAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPA 63
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNL 313
AE A+ N + + G+ + + +Q R L++ GV N+++KN+
Sbjct: 64 DAECALDTMNYEVIKGRPIRIMWSQ----RDPGLRK-------------SGVGNIFIKNM 106
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
D+SID++ L F+ FG I S K
Sbjct: 107 DESIDNKALYDTFSAFGNILSCK 129
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 183/275 (66%), Positives = 221/275 (80%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLR+SGVGNVFIKNL+K+I
Sbjct: 53 GYASVNFEQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFSAFG+ILSCKV DE G SKG+GFVHFETEEAA ++IEK+NGMLLN + VF
Sbjct: 111 DNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG-K 241
VG+F RKERE ELG + K FTNVYIKNFG+ +D+ L +F +G + S +VM ++G K
Sbjct: 170 VGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGK 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV++E E A+KAV NGKE++GK +YVG AQKK +R ELKR+FE + +R
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGI 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQG+NLYVKNLDD IDDERL+KEF+PFGTITS K
Sbjct: 290 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTK 324
Score = 401 (146.2 bits), Expect = 6.1e-37, P = 6.1e-37
Identities = 93/231 (40%), Positives = 131/231 (56%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN +D+K + F
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG +LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG + +
Sbjct: 212 GRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVD 271
Query: 192 REKELGEKAKLFT----------NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R EL K + T N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 272 RHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGR 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 255 (94.8 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 66/228 (28%), Positives = 120/228 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS+ G ILS +V +D S GY V+FE A +++
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K V I +R+ L NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPVR----IMWSQRDPSLRRSG--VGNVFIKNLNKTIDNKALYDTFSAFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ S+G GFV +E+ E AE+A++ NG ++ + ++VG+ + + ER EL
Sbjct: 124 NILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + + N+Y+KN D +DD+ L F FG + S K
Sbjct: 184 GTRTK----------EFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVK 221
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 177/275 (64%), Positives = 216/275 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KG+PIRIMWSQRDP LRKSGVGN+FIKNL+ SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFS FG+ILSCKV DE G S+G+GFVHFET EAA +I +NGMLLN + VF
Sbjct: 111 DNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG F R+ERE ELG +A FTN+Y+KN D ++++L+++F +G + S +VM +D G
Sbjct: 170 VGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGH 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV +E E A+KAV NG+EV G++LYVGRAQK+ ER ELKRRFE +K +RL
Sbjct: 230 SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSIDDE+LRKEF+P+G ITSAK
Sbjct: 290 RYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAK 324
Score = 399 (145.5 bits), Expect = 8.9e-37, P = 8.9e-37
Identities = 90/244 (36%), Positives = 139/244 (56%)
Query: 78 ERALDTMNFDALKGRPIRI--MWSQRDPSL----RKSGVGNVFIKNLDKSIDNKAMYDTF 131
+ A+ TMN L R + + S+R+ + R N+++KNL +D + + D F
Sbjct: 152 QNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG +LS KV +D+ G+S+G+GFV+FE E A K++ +NG ++ ++++VG+ R E
Sbjct: 212 SQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL + + N+Y+KN + +DEKL++ F PYG ITS +VM G
Sbjct: 272 RQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++ M ++ +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY-MQRLSTMR 390
Query: 302 RYQG 305
G
Sbjct: 391 ALGG 394
Score = 257 (95.5 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 63/228 (27%), Positives = 121/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I +++ G + N++IKN + +++ L + F +G
Sbjct: 70 DTMNFEVIK------GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ ++ SRGFGFV +E+ E A+ A+ NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + N+YVKNL +D++RL+ F+ FG + S K
Sbjct: 184 GAR----------AMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVK 221
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 179/275 (65%), Positives = 213/275 (77%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KG+PIRIMWSQRDP LRKSGVGNVFIKNL+ SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFS FG+ILSCKV D+ G S+G+GFVHFET EAA +I +NGMLLN + VF
Sbjct: 111 DNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG F R+ERE ELG +A FTN+Y+KN D ++ L+++F +G I S +VM +D G
Sbjct: 170 VGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGH 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV +E E A+KAV NGKEV G++LYVGRAQK+ ER ELKRRFE +K +RL
Sbjct: 230 SRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSIDDE+LRKEF P+G ITSAK
Sbjct: 290 RYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAK 324
Score = 397 (144.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 92/240 (38%), Positives = 138/240 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
+ A+ TMN L R + + +R+ L R N+++KNL +D + + D F
Sbjct: 152 QNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG ILS KV +D+ G+S+G+GFV+FE E A K++ +NG ++ ++++VG+ R E
Sbjct: 212 SQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL + + N+Y+KN + +DEKL++ F PYG ITS +VM G
Sbjct: 272 RQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGH 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++ I+RL+
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY----IQRLS 387
Score = 257 (95.5 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 65/228 (28%), Positives = 120/228 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I +++ G + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFEVIK------GQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ +D SRGFGFV +E+ E A+ A++ NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + N+YVKNL +D+ L+ F+ FG I S K
Sbjct: 184 GAR----------ALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVK 221
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 177/275 (64%), Positives = 216/275 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KG+PIRIMWSQRDP LRKSGVGN+FIKNL+ SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFS FG+ILSCKV D+ G S+G+GFVHFET EAA ++I +NGMLLN + VF
Sbjct: 111 DNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GK 241
VG F R+ERE ELG +A FTN+Y+KN D +++ L+++F +G + S +VM +D G
Sbjct: 170 VGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGH 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGFV ++ E A+KAV NGKEV G++LYVGRAQK+ ER ELKRRFE LK +RL
Sbjct: 230 SRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLT 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSIDDE+LRKEF+P+G ITSAK
Sbjct: 290 RYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAK 324
Score = 392 (143.0 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 86/231 (37%), Positives = 135/231 (58%)
Query: 78 ERALDTMNFDALKGRPIRI--MWSQRDPSL----RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A+ TMN L R + + S+R+ + R N+++KNL +D + + D F
Sbjct: 152 QQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG +LS KV +D+ G+S+G+GFV+F+ E A K++ +NG ++ ++++VG+ R E
Sbjct: 212 SRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL + + N+Y+KN + +DEKL++ F PYG ITS +VM G
Sbjct: 272 RQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ + K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQY 382
Score = 253 (94.1 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 63/228 (27%), Positives = 121/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I +++ G + N++IKN + +++ L + F +G
Sbjct: 70 DTMNFEVIK------GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V+ +D SRGFGFV +E+ E A++A+ NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + N+YVKNL +D++ L+ F+ FG + S K
Sbjct: 184 GAR----------AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVK 221
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 178/272 (65%), Positives = 218/272 (80%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+F+KNLD+SID+K +YDTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKV DE G SKGYGFVHFET+E A ++IEK+NGM LN + VFVG+F R++R+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAE 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
LG +AK FTNVYIKN GED +DE+L+++F +G S +VM ++ GKS+GFGFV++E E
Sbjct: 183 LGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLK-----IERLN-----RYQ 304
A KAV NGK+++GK +YVGRAQKK ER ELK +F +K IE++ R Q
Sbjct: 243 DARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQ 302
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
GVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 303 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Score = 273 (101.2 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 68/236 (28%), Positives = 126/236 (53%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY V+F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
E A ++++ +N ++ K V I +R+ L + N+++KN + + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFVKNLDRSIDSKTL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ F +G I S +V+ ++ S+G+GFV +E+ E AE+A++ NG ++ + ++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ +R EL R + + N+Y+KNL + +DDERL+ F+ FG S K
Sbjct: 176 RRDRQAELGARAK----------EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVK 221
Score = 215 (80.7 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 42/88 (47%), Positives = 58/88 (65%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN 264
N+Y+KN + +DE+L++ F P+GTITS +V G+S+GFGFV + SPE A KAV N
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 265 GKEVDGKILYVGRAQKKAERTQELKRRF 292
G+ V K LYV AQ+K ER L ++
Sbjct: 365 GRIVATKPLYVALAQRKEERQAHLSNQY 392
Score = 183 (69.5 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 42/114 (36%), Positives = 68/114 (59%)
Query: 86 FDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD 145
F +K +I +D S+R GV N+++KNLD ID++ + FS FG+I S KV
Sbjct: 280 FGQMKQDKPKIEQVPQDRSVRCQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM- 337
Query: 146 EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEK 199
E G SKG+GFV F + E A K++ ++NG ++ +K ++V ++ER+ L +
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQ 391
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 177/275 (64%), Positives = 215/275 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ LKG+PIRIMWSQRDP LRKSGVGN+FIKNL+ SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFS FG+ILSCKVA DE G S+G+GFVHFET EAA ++I +NGMLLN + VF
Sbjct: 111 DNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGK 241
VG F R+ERE ELG +A FTN+Y+KN D +++ L+++F +G + S +VM +N G
Sbjct: 170 VGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGH 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SR FGFV +E E A+KAV NGKEV G++LY GRAQK+ ER ELKRRFE +K +RL
Sbjct: 230 SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLR 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSIDD++LRKEF+P+G ITSAK
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
Score = 380 (138.8 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 85/231 (36%), Positives = 132/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++TMN L R + + +R+ L R N+++KNL +D + + D F
Sbjct: 152 QQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG +LS KV +D G+S+ +GFV+FE E A K++ +NG ++ ++++ G+ R E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL + + N+Y+KN + +D+KL++ F PYG ITS +VM G
Sbjct: 272 RQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGH 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 253 (94.1 bits), Expect = 9.3e-21, P = 9.3e-21
Identities = 63/228 (27%), Positives = 120/228 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N +L G+ I +++ G + N++IKN + +++ L + F +G
Sbjct: 70 DTMNFEMLK------GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V ++ SRGFGFV +E+ E A++A+ NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + N+YVKNL +D++ L+ F+ FG + S K
Sbjct: 184 GAR----------ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVK 221
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 177/275 (64%), Positives = 215/275 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ LKG+PIRIMWSQRDP LRKSGVGN+FIKNL+ SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFS FG+ILSCKVA DE G S+G+GFVHFET EAA ++I +NGMLLN + VF
Sbjct: 111 DNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGK 241
VG F R+ERE ELG +A FTN+Y+KN D +++ L+++F +G + S +VM +N G
Sbjct: 170 VGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGH 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SR FGFV +E E A+KAV NGKEV G++LY GRAQK+ ER ELKRRFE +K +RL
Sbjct: 230 SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLR 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSIDD++LRKEF+P+G ITSAK
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 63/228 (27%), Positives = 120/228 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS +V +D S GY +++F+ A +++
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N +L G+ I +++ G + N++IKN + +++ L + F +G
Sbjct: 70 DTMNFEMLK------GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V ++ SRGFGFV +E+ E A++A+ NG ++ + ++VG + + ER EL
Sbjct: 124 NILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R + N+YVKNL +D++ L+ F+ FG + S K
Sbjct: 184 GAR----------ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVK 221
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 175/280 (62%), Positives = 218/280 (77%)
Query: 59 QLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNL 118
+L G V QP D ERA+DTMNF+AL G+P+RIMWSQRDP++R+SG GN+FIKNL
Sbjct: 70 RLSLGYAYVNFQQP--ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNL 127
Query: 119 DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178
DK IDNK++YDTFS FG+ILSCKVA DE G SKGYGFVHFETEEAA +I+KVNGMLL
Sbjct: 128 DKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAG 187
Query: 179 KIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN 238
K VFVGKF PR +R +ELGE AK FTNVY+KNFG+ +N E L+++F +G ITS VM
Sbjct: 188 KKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV 247
Query: 239 DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGRAQKKAERTQELKRRFEMLK 296
+GKS+GFGFVA+ +PE AE AVQA + ++G L +V RAQKK+ER ELK++ E K
Sbjct: 248 EGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHK 307
Query: 297 IERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
ER+ +YQGVNLYVKNLD+++DD+ L+K+F +G ITSAK
Sbjct: 308 AERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAK 347
Score = 293 (108.2 bits), Expect = 4.9e-25, P = 4.9e-25
Identities = 73/208 (35%), Positives = 112/208 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEK- 170
NV++KN + + + F+ FG+I SC+V E G SKG+GFV F E A +++
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQAL 272
Query: 171 ----VNGMLLNSKIVFVGKFIPR-----KEREKELGEKAKLF--TNVYIKNFGEDFNDEK 219
+ G L + K R K+ E+ E+ + + N+Y+KN E +D+
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 220 LKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
LK+ FE YG ITS +VM ++ G+S+GFGFV +E PE A AV N K V K LYV A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 279 QKKAERTQELKRRFEMLKIERLNRYQGV 306
Q+K +R +L ++ M ++ + + V
Sbjct: 393 QRKEDRRAQLASQY-MQRLASMRMHGNV 419
Score = 275 (101.9 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 70/229 (30%), Positives = 125/229 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSI 168
+ ++++ +L ++ +++ FSA G +LS +V +D S GY +V+F+ A +++
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAM 90
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N L+ K + + + R + G N++IKN + +++ + + F +G
Sbjct: 91 DTMNFEALHGKPMRI-MWSQRDPAMRRSGAG-----NIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 229 TITSYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
I S +V ++ DG S+G+GFV +E+ E A+ A+Q NG + GK ++VG+ Q +A+R +E
Sbjct: 145 NILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 204
Query: 288 LKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
L E K Q N+YVKN D + E L K F FG ITS +
Sbjct: 205 LG---ETAK-------QFTNVYVKNFGDHYNKETLEKLFAKFGNITSCE 243
Score = 170 (64.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 33/91 (36%), Positives = 58/91 (63%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSI 168
GV N+++KNLD+++D+ + F ++G+I S KV DE G SKG+GFV FE E A ++
Sbjct: 316 GV-NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEK 199
++N ++ SK ++V +++R +L +
Sbjct: 375 TEMNSKMVCSKPLYVAIAQRKEDRRAQLASQ 405
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 169/275 (61%), Positives = 214/275 (77%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G + QP D ERALDTMNF+ +KG+PIRIMWS RDP LR+SG+GN+FIKNL+ SI
Sbjct: 53 GYAYINFQQP--ADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSI 110
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+YDTFS FGSILS KV +E G S+G+GFVHFET EAA K+I +NGMLLN + VF
Sbjct: 111 DNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVF 169
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGK 241
VG F R++RE ELG +A FTN+Y+KN D +++ L+++F +G S +VM +++G+
Sbjct: 170 VGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQ 229
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
SRGFGF+ +E E A+KAV NGKEV G++LYVGRAQK+AER ELKRRFE +K ER N
Sbjct: 230 SRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQN 289
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDDSI+D+RL++ F+ +G ITSAK
Sbjct: 290 RYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAK 324
Score = 395 (144.1 bits), Expect = 2.2e-36, P = 2.2e-36
Identities = 91/251 (36%), Positives = 142/251 (56%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++TMN L R + + +R+ L R G N+++KNL +D + + D F
Sbjct: 152 QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLF 211
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG S KV +D G S+G+GF++FE E A K+++ +NG ++ ++++VG+ R E
Sbjct: 212 SQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAE 271
Query: 192 REKELG--------EKAKLF--TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL E+ + N+Y+KN + ND++LKE+F YG ITS +VM
Sbjct: 272 RQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH 331
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIER-- 299
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++ ++ R
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRR-RLSRSV 390
Query: 300 LNRYQGVNLYV 310
L+ +Q Y+
Sbjct: 391 LSSFQQPTSYL 401
Score = 253 (94.1 bits), Expect = 9.0e-21, P = 9.0e-21
Identities = 64/228 (28%), Positives = 120/228 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G+ILS +V +D S GY +++F+ A +++
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ G+ I ++ G + N++IKN +++ L + F +G
Sbjct: 70 DTMNFEMIK------GQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFG 123
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
+I S +V+ N+ SRGFGFV +E+ E A+KA+ NG ++ + ++VG + + +R EL
Sbjct: 124 SILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL 183
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R L N+YVKNL +D++ L+ F+ FG S K
Sbjct: 184 GAR--ALGF--------TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVK 221
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 167/281 (59%), Positives = 211/281 (75%)
Query: 59 QLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNL 118
+L G V QP D ERALDTMNF+ + GRP+RIMWSQRDP+ R++G GN+FIKNL
Sbjct: 95 RLSLGYAYVNFQQP--ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNL 152
Query: 119 DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178
D+ IDNK++YDTFS FG+ILSCKVA D++GNSKGYGFVHFETE +A +IEKVNGMLL+
Sbjct: 153 DRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSD 212
Query: 179 KIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN 238
K V+VGKF PR +R KELGE +TNV++KNFGE + EKL MF +G ITS VM +
Sbjct: 213 KKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD 272
Query: 239 -DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQELKRRFEML 295
GK +GFGFVA+ + A +AV+ N ++G L V RAQKK+ER+ ELKR++E L
Sbjct: 273 AQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEAL 332
Query: 296 KIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
K ER+ RYQGVNLYVKN+++ ++D+ LR F+ FGTITSAK
Sbjct: 333 KQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAK 373
Score = 339 (124.4 bits), Expect = 6.1e-30, P = 6.1e-30
Identities = 83/221 (37%), Positives = 123/221 (55%)
Query: 99 SQRDPSLRKSGVG--NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFV 156
+QR L +SG+ NVF+KN + +D + + FS FG I S V D QG KG+GFV
Sbjct: 224 AQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
Query: 157 HFETEEAANKSIEKVNGMLLNSKI--VFVGKFIPRKEREKELGEKAKLF----------T 204
F ++AA +++EK+N +L + V + + ER EL K +
Sbjct: 284 AFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGV 343
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAW 263
N+Y+KN ED ND+ L++ F +GTITS +VM + +G+S+GFGFV +E PE A AV
Sbjct: 344 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDM 403
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQ 304
N K + K LYV AQ+K +R +L ++ M ++ L Q
Sbjct: 404 NSKMIGAKPLYVALAQRKEDRRAQLASQY-MQRLATLRMGQ 443
Score = 257 (95.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 65/228 (28%), Positives = 122/228 (53%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSI 168
+ +++I +L + +++ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 56 MASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERAL 115
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N +++ + + + + R + G N++IKN +++ + + F +G
Sbjct: 116 DTMNFEVIHGRPMRI-MWSQRDPAARRAGNG-----NIFIKNLDRVIDNKSVYDTFSLFG 169
Query: 229 TITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
I S +V +D G S+G+GFV +E+ A+ A++ NG + K +YVG+ Q +A+R +E
Sbjct: 170 NILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKE 229
Query: 288 LKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
L LK Y N++VKN + +D E+L F+ FG ITSA
Sbjct: 230 LGE--SGLK------Y--TNVFVKNFGEHLDQEKLSAMFSKFGEITSA 267
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 163/226 (72%), Positives = 192/226 (84%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVFIKNLDKSIDNKA+YDTFSAFG+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
NGMLLN + VFVG+F RKERE ELG KAK FTNVYIKNFGE+ +DE LKE+F +G
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 232 SYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +VM + +GKS+GFGFV+YE E A KAV+ NGKE+ GKI++VGRAQKK ER ELKR
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+FE LK ER++RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 181 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 226
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 92/231 (39%), Positives = 138/231 (59%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++++ + F
Sbjct: 54 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 113
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ KI+FVG+ + E
Sbjct: 114 SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 173
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+YIKN + +DEKL++ F P+G+ITS +VM DG+
Sbjct: 174 RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 233
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 234 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 284
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 686 (246.5 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 135/202 (66%), Positives = 163/202 (80%)
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
S+ V DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VFVG+F RKERE E
Sbjct: 92 SLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 150
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
LG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ GKS+GFGFV++E E
Sbjct: 151 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 210
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+ RYQGVNLYVKNLD
Sbjct: 211 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 270
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D IDDERLRKEF+PFGTITSAK
Sbjct: 271 DGIDDERLRKEFSPFGTITSAK 292
Score = 410 (149.4 bits), Expect = 3.8e-38, P = 3.8e-38
Identities = 100/257 (38%), Positives = 141/257 (54%)
Query: 53 SGYTCHQLGS-GAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQRDPSL-- 105
SG C + GS G V ERA++ MN L R + + +R+ L
Sbjct: 96 SGVVCDENGSKGYGFVHFETQEA--AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 153
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAAN 165
R NV+IKN + +D++ + D F FG LS KV DE G SKG+GFV FE E A
Sbjct: 154 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 213
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDF 215
K+++++NG LN K ++VG+ + ER+ EL K + N+Y+KN +
Sbjct: 214 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 273
Query: 216 NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
+DE+L++ F P+GTITS +VM G+S+GFGFV + SPE A KAV NG+ V K LYV
Sbjct: 274 DDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 276 GRAQKKAERTQELKRRF 292
AQ+K ER L ++
Sbjct: 334 ALAQRKEERQAHLTNQY 350
Score = 171 (65.3 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 34/48 (70%), Positives = 37/48 (77%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGV 110
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGV
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGV 98
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 159/264 (60%), Positives = 208/264 (78%)
Query: 74 MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
+ D ++ALDTMNFD +KG+ IR+MWSQRD LR+SG+GNVFIKNLDKSIDNK +Y+ FSA
Sbjct: 119 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 178
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG ILS KV D+QG SKGY FVHF+ + AA+++IE++NG LL VFVG+F RK+RE
Sbjct: 179 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYES 252
EL KA FTNVYIKNFG D +DE+LK++F YG S +VM ++ GKS+GFGFV+++S
Sbjct: 238 AELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 297
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKN 312
E A+KAV+ NG++++G++++VGRAQKK ER ELK+ FE LK ER+ QGV LY+KN
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 313 LDDSIDDERLRKEFTPFGTITSAK 336
LDD+IDDE+LR EF+ FG+I+ K
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVK 381
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 79/219 (36%), Positives = 125/219 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSLRK--SGVGNVFIKNLDKSIDNKAMYDTF 131
+RA++ MN LKG + + R+ LR S NV+IKN +D++ + D F
Sbjct: 209 DRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF 268
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S +G LS KV D G SKG+GFV F++ EAA K++E++NG +N +++FVG+ + E
Sbjct: 269 SKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 328
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL + + +YIKN + +DEKL+ F +G+I+ +VM +G+
Sbjct: 329 RQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQ 388
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
S+GFG + + SPE A KA+ NG+ + K L + AQ+
Sbjct: 389 SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 258 (95.9 bits), Expect = 7.9e-22, P = 7.9e-22
Identities = 62/231 (26%), Positives = 121/231 (52%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAAN 165
K + ++++ +L + ++ FS G +LS ++ +D+ S GY +V+F A
Sbjct: 64 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 123
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225
K+++ +N ++ K + + +R+ L NV+IKN + +++ L E F
Sbjct: 124 KALDTMNFDIIKGKSIR----LMWSQRDAYLRRSG--IGNVFIKNLDKSIDNKTLYEHFS 177
Query: 226 PYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT 285
+G I S +VM++D S+G+ FV +++ A++A++ NGK + G ++VGR + + +R
Sbjct: 178 AFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 286 QELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
EL+ + + N+Y+KN +DDERL+ F+ +G S K
Sbjct: 238 AELRSKAS----------EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 278
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 159/264 (60%), Positives = 208/264 (78%)
Query: 74 MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
+ D ++ALDTMNFD +KG+ IR+MWSQRD LR+SG+GNVFIKNLDKSIDNK +Y+ FSA
Sbjct: 61 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG ILS KV D+QG SKGY FVHF+ + AA+++IE++NG LL VFVG+F RK+RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 179
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYES 252
EL KA FTNVYIKNFG D +DE+LK++F YG S +VM ++ GKS+GFGFV+++S
Sbjct: 180 AELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 239
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKN 312
E A+KAV+ NG++++G++++VGRAQKK ER ELK+ FE LK ER+ QGV LY+KN
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 299
Query: 313 LDDSIDDERLRKEFTPFGTITSAK 336
LDD+IDDE+LR EF+ FG+I+ K
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVK 323
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 79/219 (36%), Positives = 125/219 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSLRK--SGVGNVFIKNLDKSIDNKAMYDTF 131
+RA++ MN LKG + + R+ LR S NV+IKN +D++ + D F
Sbjct: 151 DRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF 210
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S +G LS KV D G SKG+GFV F++ EAA K++E++NG +N +++FVG+ + E
Sbjct: 211 SKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 270
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL + + +YIKN + +DEKL+ F +G+I+ +VM +G+
Sbjct: 271 RQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQ 330
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
S+GFG + + SPE A KA+ NG+ + K L + AQ+
Sbjct: 331 SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/231 (26%), Positives = 121/231 (52%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAAN 165
K + ++++ +L + ++ FS G +LS ++ +D+ S GY +V+F A
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225
K+++ +N ++ K + + +R+ L NV+IKN + +++ L E F
Sbjct: 66 KALDTMNFDIIKGKSIR----LMWSQRDAYLRRSG--IGNVFIKNLDKSIDNKTLYEHFS 119
Query: 226 PYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT 285
+G I S +VM++D S+G+ FV +++ A++A++ NGK + G ++VGR + + +R
Sbjct: 120 AFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 179
Query: 286 QELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
EL+ + + N+Y+KN +DDERL+ F+ +G S K
Sbjct: 180 AELRSKAS----------EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 220
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 157/263 (59%), Positives = 205/263 (77%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+AL+ +N+ +KGRP RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG
Sbjct: 114 DGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 173
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVAQDE GNSKGYGFVH+ET+EAA+++I+ VNGMLLN K V+VG IP+K+R+ +
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 233
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESP 253
E FTN+Y+KN + D++ + +FE YG +TS + + GKSRGFGFV + S
Sbjct: 234 FDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSH 293
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNL 313
E A KAVQ N KE G+ LYVGRAQKK ER +EL++ +E + E+ ++YQGVNLY+KNL
Sbjct: 294 EDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNL 353
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
DD +DDE+LR+ F+ FG ITSAK
Sbjct: 354 DDEVDDEKLRQLFSEFGPITSAK 376
Score = 257 (95.5 bits), Expect = 5.3e-21, P = 5.3e-21
Identities = 64/226 (28%), Positives = 120/226 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +++ FS GS+ S +V +D S GY +V++ T K++E+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N L+ + + + R ++ G+ NV+IKN +++ L + F +G I
Sbjct: 122 LNYTLIKGRPCRI-MWSQRDPALRKTGQG-----NVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ G S+G+GFV YE+ E A +A++ NG ++ K +YVG K +R +
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR----Q 231
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+F+ +K N+YVKN++ + D+ R F +G +TS+
Sbjct: 232 SKFDEMKANF------TNIYVKNINPEVTDDEFRTLFEKYGDVTSS 271
Score = 227 (85.0 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 46/143 (32%), Positives = 88/143 (61%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAAN 165
K+ N+++KN++ + + F +G + S +A+D++ G S+G+GFV+F + E A+
Sbjct: 238 KANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDAS 297
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDF 215
K+++++N + + ++VG+ + ERE+EL EKA + N+YIKN ++
Sbjct: 298 KAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEV 357
Query: 216 NDEKLKEMFEPYGTITSYRVMNN 238
+DEKL+++F +G ITS +VM +
Sbjct: 358 DDEKLRQLFSEFGPITSAKVMRD 380
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 37/121 (30%), Positives = 66/121 (54%)
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + ++K++ P +E E + GE+++ N K ++ +D K +E E + +
Sbjct: 370 GPITSAKVMRDSITEPGEEGESKEGEESE--KNKENKPEEKEGDDSKPEEK-EGEDSKSK 426
Query: 233 YRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
++ GKS+GFGFV + +P+ A KAV N + V+ K LYV AQ+K R +L++
Sbjct: 427 SKL----GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSI 482
Query: 293 E 293
+
Sbjct: 483 Q 483
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 159/264 (60%), Positives = 202/264 (76%)
Query: 74 MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
M D E+ALD +N+ +KGRP RIMWSQRDPSLRK G GNVFIKNLD +IDNKA++DTFSA
Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA 190
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG ILSCKVA DE GN+KGYGFVHF++ E+AN +IE VNGMLLN K V+VG + R+ER+
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ 250
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYR-VMNNDGKSRGFGFVAYES 252
++ FTNVYIKN + +++ ++F +G ITS V + + K RGFGFV Y +
Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKN 312
E A+KAV N KE GK LYVGRAQKK ER +EL++R+E +K+E++N+YQGVNL++KN
Sbjct: 311 HECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKN 370
Query: 313 LDDSIDDERLRKEFTPFGTITSAK 336
L D +DDERL+ EF+ FGTITSAK
Sbjct: 371 LQDEVDDERLKAEFSAFGTITSAK 394
Score = 348 (127.6 bits), Expect = 5.3e-31, P = 5.3e-31
Identities = 78/207 (37%), Positives = 120/207 (57%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NV+IKNLD I + D F FG I S + +D+ +G+GFV++ E A K
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG---EKAKLF-------TNVYIKNFGEDFN 216
+++++N K ++VG+ + ERE+EL E+ KL N++IKN ++ +
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVD 376
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
DE+LK F +GTITS ++M ++ GKS+GFGFV Y +PE A KAV N + + GK LYV
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Query: 276 GRAQKKAERTQELKRRFEMLKIERLNR 302
AQ+K R +L+ + + RL +
Sbjct: 437 ALAQRKEVRRSQLEAQIQARNQFRLQQ 463
Score = 243 (90.6 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 66/226 (29%), Positives = 117/226 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +++ F++ G + S +V +D S GY +V+F E K++++
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-NVYIKNFGEDFNDEKLKEMFEPYGT 229
+N L+ + I +R+ L K+ T NV+IKN +++ L + F +G
Sbjct: 141 LNYTLIKGRPCR----IMWSQRDPSL---RKMGTGNVFIKNLDPAIDNKALHDTFSAFGK 193
Query: 230 ITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V ++ G ++G+GFV ++S E A A++ NG ++ K +YVG + ER
Sbjct: 194 ILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQS-- 251
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
K+E L + N+Y+KNLD I ++ F FG ITS
Sbjct: 252 -------KVEAL-KANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Score = 188 (71.2 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 51/137 (37%), Positives = 77/137 (56%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQ----RDPSLRK-------------SGVGNVFIKNLDK 120
++A+D +N KG+ + + +Q R+ LRK GV N+FIKNL
Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQD 373
Query: 121 SIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKI 180
+D++ + FSAFG+I S K+ DEQG SKG+GFV + T E ANK++ ++N +L K
Sbjct: 374 EVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKP 433
Query: 181 VFVGKFIPRKE-REKEL 196
++V RKE R +L
Sbjct: 434 LYVA-LAQRKEVRRSQL 449
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 155/262 (59%), Positives = 206/262 (78%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++ +N++ ++GRP RIMWSQRDPS R+SG GN+FIKNL +IDNKA++DTFSAFG
Sbjct: 105 DGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG 164
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
ILSCKVA DE G SK +GFVH+ET EAA +IE VNGMLLN + VFVGK I +K+RE +
Sbjct: 165 KILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS-YRVMNNDGKSRGFGFVAYESPE 254
E FTN+Y+KN ++++E +++F P+G ITS Y + DGKS+GFGFV +E E
Sbjct: 225 FEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHE 284
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A KAV+ N KE++G+ +YVGRAQKK ER +ELK+++E +++E+L +YQGVNL+VKNLD
Sbjct: 285 SAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLD 344
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D+ID E+L +EF PFGTITSAK
Sbjct: 345 DTIDSEKLEEEFKPFGTITSAK 366
Score = 363 (132.8 bits), Expect = 1.0e-32, P = 1.0e-32
Identities = 75/198 (37%), Positives = 126/198 (63%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N+++KN+D + ++ FS FG I S + +D+ G SKG+GFV+FE E+A K
Sbjct: 229 KANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVK 288
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
++E++N +N + ++VG+ ++ER +EL EK + N+++KN + +
Sbjct: 289 AVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTID 348
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
EKL+E F+P+GTITS +VM ++ GKS+GFGFV + +PE A KA+ N + ++GK LYV
Sbjct: 349 SEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Query: 276 GRAQKKAERTQELKRRFE 293
AQ+K R +L+++ +
Sbjct: 409 ALAQRKDVRRSQLEQQIQ 426
Score = 254 (94.5 bits), Expect = 7.6e-21, P = 7.6e-21
Identities = 65/225 (28%), Positives = 120/225 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEK 170
++++ L+ S++ +++ FS G + S +V +D S GY +V++ E K+IE+
Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEE 112
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N + + + + R + G+ N++IKN +++ L + F +G I
Sbjct: 113 LNYNPIEGRPCRI-MWSQRDPSARRSGDG-----NIFIKNLHPAIDNKALHDTFSAFGKI 166
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ G+S+ FGFV YE+ E AE A++ NG ++ + ++VG+ K +R +
Sbjct: 167 LSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDR----E 222
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+FE +K N+YVKN+D + +E K F+PFG ITS
Sbjct: 223 SKFEEMKANF------TNIYVKNIDLNYSEESFEKLFSPFGKITS 261
Score = 186 (70.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 41/103 (39%), Positives = 65/103 (63%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSI 168
GV N+F+KNLD +ID++ + + F FG+I S KV DE G SKG+GFV F T E A K+I
Sbjct: 335 GV-NLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAI 393
Query: 169 EKVNGMLLNSKIVFVGKFIPRKE-REKELGEKAKLFTNVYIKN 210
++N ++N K ++V RK+ R +L ++ + + ++N
Sbjct: 394 TEMNTRMINGKPLYVA-LAQRKDVRRSQLEQQIQARNQMRMQN 435
Score = 134 (52.2 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 49/184 (26%), Positives = 84/184 (45%)
Query: 159 ETEEAANKSIEKVN-GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTN---VYIKNFGED 214
ET + +S+EK+N G + + E++ GE + + N +Y+
Sbjct: 5 ETNQL-QESMEKLNIGSTTEEQSAAAATTTADQSAEEQ-GESSGVAENSASLYVGELNPS 62
Query: 215 FNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI 272
N+ L E+F P G ++S RV + KS G+ +V Y E EKA++ N ++G+
Sbjct: 63 VNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRP 122
Query: 273 LYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTI 332
+ +Q R +R + G N+++KNL +ID++ L F+ FG I
Sbjct: 123 CRIMWSQ----RDPSARRSGD-----------G-NIFIKNLHPAIDNKALHDTFSAFGKI 166
Query: 333 TSAK 336
S K
Sbjct: 167 LSCK 170
Score = 51 (23.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 211 FGEDFNDEKLK----EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGK 266
F +DFN + ++ + +P G Y N R + P+ +K + G+
Sbjct: 506 FQQDFNGQNMRPQQQQQQQPRG---GYYPNRNQTSKRDLAAIISSVPQDQQKRIL---GE 559
Query: 267 EVDGKILYVGRAQK 280
E+ KI+ G+AQ+
Sbjct: 560 ELYPKIVATGKAQE 573
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 156/260 (60%), Positives = 205/260 (78%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSI 137
ERALD +N+ +KG+P RIMWSQRDP+LRK+G GNVFIKNLD +IDNKA++DTF+AFG+I
Sbjct: 97 ERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 156
Query: 138 LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELG 197
LSCKVAQDE G SKGYGFVH+ET EAAN +I+ VNGMLLN K VFVG I +K+R+ +
Sbjct: 157 LSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 216
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFA 256
E FTN+YIKN + DE+ +++FE +G ITS + +++GKSRGFGFV + + E A
Sbjct: 217 EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESA 276
Query: 257 EKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDS 316
+ AV+ N KEV + LYVGRAQKK ER +EL++++E ++E+ ++YQGVNLYVKNL D
Sbjct: 277 QAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDD 336
Query: 317 IDDERLRKEFTPFGTITSAK 336
+DD++LR+ F P+GTITSAK
Sbjct: 337 VDDDKLRELFGPYGTITSAK 356
Score = 275 (101.9 bits), Expect = 5.7e-23, P = 5.7e-23
Identities = 63/191 (32%), Positives = 108/191 (56%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ N++IKN+D ++++ F FG I S +++D +G S+G+GFV+F T E+A
Sbjct: 219 KANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQA 278
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG--------EKAKLF--TNVYIKNFGEDFN 216
++E++N + S+ ++VG+ + ERE+EL EKA + N+Y+KN +D +
Sbjct: 279 AVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVD 338
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEK-AVQAWNGKEVDGKILYV 275
D+KL+E+F PYGTITS +VM + V +PE K + N K +G+
Sbjct: 339 DDKLRELFGPYGTITSAKVMRDTAP------VETATPESETKESANKENEKAAEGEKEPA 392
Query: 276 GRAQKKAERTQ 286
++K E+ +
Sbjct: 393 AEEKEKEEKKE 403
Score = 273 (101.2 bits), Expect = 9.4e-23, P = 9.4e-23
Identities = 67/226 (29%), Positives = 120/226 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ LD S+ +Y+ FS+ G + S +V +D S GY +V++ +++++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N L+ K + + R ++ G+ NV+IKN +++ L + F +G I
Sbjct: 103 LNYTLIKGKPCRI-MWSQRDPALRKTGQG-----NVFIKNLDSAIDNKALHDTFAAFGNI 156
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ G S+G+GFV YE+ E A A++ NG ++ K ++VG K +R +
Sbjct: 157 LSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR----Q 212
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+FE +K N+Y+KN+D ++DE RK F FG ITSA
Sbjct: 213 SKFEEMKANF------TNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 240 GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
GKS+GFGFV + SP+ A KAV N + V+GK LYV AQ+K R +L+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 463
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 154/279 (55%), Positives = 205/279 (73%)
Query: 60 LGSGAI-LVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNL 118
LG G + +Q+G D ++AL+TMNFD +KG+ IR+MWSQRD LRKSG+GNVFIKNL
Sbjct: 51 LGYGYVNFLQVG-----DAQKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNL 105
Query: 119 DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178
DKSIDNK +Y+ FS FG I+S KV DE+G SKGYGFVH++ + AA+++IE++NG LL
Sbjct: 106 DKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRD 164
Query: 179 KIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN 238
+FV +F RK+RE EL EK FTNVYIKNFG+D +DE L+ +F YG S +VM +
Sbjct: 165 STLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD 224
Query: 239 -DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKI 297
GKS+ FGFV+++S + A+ AV+ NG++++G+ ++VGRAQKK ER ELK FE +K
Sbjct: 225 ASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKK 284
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
ER+ Q LY+KNLDD+IDDE LRKEF+ FG+I K
Sbjct: 285 ERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVK 323
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/219 (33%), Positives = 120/219 (54%)
Query: 78 ERALDTMNFDALKGRPIRIMW----SQRDPSLRKSGVG--NVFIKNLDKSIDNKAMYDTF 131
+RA++ MN L+ + + R+ LR+ NV+IKN +D++++ F
Sbjct: 151 DRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVF 210
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S +G LS KV +D G SK +GFV F++ +AA ++E +NG +N + +FVG+ + E
Sbjct: 211 SKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVE 270
Query: 192 REKELGE----------KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL E +A+ +YIKN + +DE L++ F +G+I +VM G+
Sbjct: 271 RQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQ 330
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
S+GFG + + SPE A KA+ NG+ + K L + QK
Sbjct: 331 SKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 67/231 (29%), Positives = 122/231 (52%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAAN 165
K ++++ +L + + ++ F+ G +LS ++ +D + S GYG+V+F A
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225
K++E +N L+ K + + +R+ L + NV+IKN + +++ L E F
Sbjct: 66 KALETMNFDLIKGKSIR----LMWSQRDACLRKSG--IGNVFIKNLDKSIDNKTLYEHFS 119
Query: 226 PYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT 285
P+G I S +VM ++ S+G+GFV Y+ A++A++ NGK + L+V R + + +R
Sbjct: 120 PFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDRE 179
Query: 286 QELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
EL+ E+ + N+Y+KN D +DDE LR F+ +G S K
Sbjct: 180 AELR--------EKPAEF--TNVYIKNFGDDMDDESLRSVFSKYGQTLSVK 220
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 150/263 (57%), Positives = 205/263 (77%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E AL+TMNFD + G+P R+MWSQ D LRKSG+GN+FIKNLDKSIDN+A++ FSAFG
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFG 130
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
SILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER E
Sbjct: 131 SILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 196 LGEKAKL-FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESP 253
+ + K FTNV++KNFG+D +D+KLKE+F YG S +V+ ++ GKS+GFGFV YE+
Sbjct: 190 VRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETH 249
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNL 313
E A+KAV +GK +DGK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+KNL
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNL 309
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
D++IDDE+L++EF+ FG+I+ AK
Sbjct: 310 DETIDDEKLKEEFSSFGSISRAK 332
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 71/187 (37%), Positives = 109/187 (58%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
K+ NVF+KN +D+ + + FS +G S KV +D G SKG+GFV +ET EAA K
Sbjct: 195 KATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQK 254
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELG---EKAKLFTN-------VYIKNFGEDFN 216
++ ++G ++ K+++VG+ + ER EL E+ +L +YIKN E +
Sbjct: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETID 314
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV- 275
DEKLKE F +G+I+ +VM G+ +GFG + + S E A KAV NG+ V K L V
Sbjct: 315 DEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVT 374
Query: 276 -GRAQKK 281
G+A+++
Sbjct: 375 LGQARRR 381
Score = 231 (86.4 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 59/225 (26%), Positives = 115/225 (51%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKV 171
+++ +LD + +Y F G + ++ +D S GYG+V+F A ++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N L+N K F + +R ++ G N++IKN + ++ L +F +G+I
Sbjct: 80 NFDLINGK-PFRLMWSQPDDRLRKSG-----IGNIFIKNLDKSIDNRALFYLFSAFGSIL 133
Query: 232 SYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRR 291
S +V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 134 SCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 292 FEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++ N++VKN D +DD++L++ F+ +G S K
Sbjct: 194 ---------DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVK 229
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 159/282 (56%), Positives = 205/282 (72%)
Query: 56 TCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFI 115
T LG G V P D RAL+ +NF AL GR IR+M+S RDPSLRKSGVGN+FI
Sbjct: 82 TRRSLGYG--YVNYATPQ--DASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFI 137
Query: 116 KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML 175
KNLDKSID+KA+++TFSAFG ILSCKVA D G SKGYGFV ++T+EAA +I+K+NGML
Sbjct: 138 KNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGML 197
Query: 176 LNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV 235
LN K V+VG F+ + +R+ GEK K FTNVY+KN E +DE+L ++F +G TS +
Sbjct: 198 LNDKQVYVGPFVHKLQRDPS-GEKVK-FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI 255
Query: 236 MNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEM 294
M + +GKS+GFGFV +E+ + A +AV A NGK D K +VG+AQKK+ER ELK++FE
Sbjct: 256 MRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
Query: 295 LKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
E ++ QG NLYVKNLD+S+ D++LR+ F PFGTITS K
Sbjct: 316 SLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCK 357
Score = 393 (143.4 bits), Expect = 6.9e-36, P = 6.9e-36
Identities = 84/208 (40%), Positives = 125/208 (60%)
Query: 100 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFE 159
QRDPS K NV++KNL +S+ ++ + F FG SC + +D +G SKG+GFV+FE
Sbjct: 213 QRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFE 272
Query: 160 TEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIK 209
+ A ++++ +NG + K FVGK + ERE EL +K + +N+Y+K
Sbjct: 273 NSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVK 332
Query: 210 NFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEV 268
N E D+KL+E F P+GTITS +VM + G SRG GFVA+ +PE A +A+ NGK +
Sbjct: 333 NLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Query: 269 DGKILYVGRAQKKAERTQELKRRFEMLK 296
K LYV AQ+K +R L+ +F ++
Sbjct: 393 VTKPLYVALAQRKEDRKARLQAQFSQMR 420
Score = 281 (104.0 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/230 (30%), Positives = 125/230 (54%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAAN 165
+ G ++++ +LD ++ + +++ F+ G ++S +V +D S GYG+V++ T + A+
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225
+++ ++N M LN + + V + R+ L + N++IKN + + + L E F
Sbjct: 101 RALNELNFMALNGRAIRVMYSV----RDPSLRKSG--VGNIFIKNLDKSIDHKALHETFS 154
Query: 226 PYGTITSYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284
+G I S +V ++ G+S+G+GFV Y++ E A+ A+ NG ++ K +YVG K +R
Sbjct: 155 AFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQR 214
Query: 285 TQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
E +K N+YVKNL +S+ DE L K F FG TS
Sbjct: 215 DPS----GEKVKF--------TNVYVKNLSESLSDEELNKVFGEFGVTTS 252
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 145/259 (55%), Positives = 193/259 (74%)
Query: 79 RALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSIL 138
+A++ +N+ +KGR RIMWSQRDPSLRK G GN+FIKNL IDNKA+YDTFS FG IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 139 SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGE 198
S K+A DE G SKG+GFVHFE E AA ++I+ +NGMLLN + ++V + RKER+ +L E
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 199 KAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAE 257
+TN+Y+KN + DE+ +E+F +G I S + + DGK +GFGFV YE E A
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 258 KAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSI 317
KAV+A N E++G+ LYVGRAQKK ER LK+++E ++E++ +YQGVNL+VKNLDDS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 318 DDERLRKEFTPFGTITSAK 336
DDE+L +EF P+GTITSAK
Sbjct: 334 DDEKLEEEFAPYGTITSAK 352
Score = 340 (124.7 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 78/207 (37%), Positives = 124/207 (59%)
Query: 100 QRDPSLR--KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVH 157
+RD L K+ N+++KN++ ++ + F+ FG I+S + +D G KG+GFV+
Sbjct: 206 ERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVN 265
Query: 158 FETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER----EKE-----LGEKAKLF-TNVY 207
+E E A K++E +N LN + ++VG+ + ER +K+ L + AK N++
Sbjct: 266 YEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLF 325
Query: 208 IKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGK 266
+KN + +DEKL+E F PYGTITS +VM + GKS+GFGFV + +PE A KA+ N +
Sbjct: 326 VKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQ 385
Query: 267 EVDGKILYVGRAQKKAERTQELKRRFE 293
V GK LYV AQ+K R +L ++ +
Sbjct: 386 IVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 289 (106.8 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 72/226 (31%), Positives = 122/226 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ +L+ S+ +YD FS GS+ S +V +D S GY +V+F EA K+IE+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N + ++ I +R+ L +K N++IKN D +++ L + F +G I
Sbjct: 99 LNYTPIKGRLCR----IMWSQRDPSLRKKGS--GNIFIKNLHPDIDNKALYDTFSVFGDI 152
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S ++ ++ GKS+GFGFV +E A++A+ A NG ++G+ +YV + ER +L+
Sbjct: 153 LSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 212
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
E Y NLYVKN++ DE+ ++ F FG I SA
Sbjct: 213 --------ETKAHY--TNLYVKNINSETTDEQFQELFAKFGPIVSA 248
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 154/261 (59%), Positives = 194/261 (74%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERALDT+N ++G+ RIMWSQRDPSLRKSGVGNVFIKNLDK ID+KA+YDTFSAFG
Sbjct: 63 DAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG 122
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKV D+ +SKG+GFVH+ET+E+A+K+I KVNGM++N + VFVG F KER +
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
K FTNV+ KN ED ++LKE+ + YG IT+ +M +D GKS+GFGF +ES E
Sbjct: 183 TEVK---FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAE 239
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A+ V+ NGK GK +Y GRAQKK ER ELK FE +YQGVNLY+KN+D
Sbjct: 240 AAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNID 292
Query: 315 DSIDDERLRKEFTPFGTITSA 335
DSID+++LR+ F+ FGTITSA
Sbjct: 293 DSIDNDKLREVFSQFGTITSA 313
Score = 329 (120.9 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 70/187 (37%), Positives = 109/187 (58%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF KNL + + + + +G I + + D++G SKG+GF +FE+ EAA +E
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENE 248
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELG---EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
NG + + K ++ G+ + ERE EL E N+YIKN + +++KL+E+F +G
Sbjct: 249 NGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 308
Query: 229 TITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQ 286
TITS VM +D S+GFGFV Y +P+ A +AV NG+ + K LYV AQ+K R
Sbjct: 309 TITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRA 368
Query: 287 ELKRRFE 293
+L+ + +
Sbjct: 369 QLEMQHQ 375
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 149/263 (56%), Positives = 203/263 (77%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FSAFG
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG 130
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER E
Sbjct: 131 NILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 196 LGEKAKL-FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESP 253
+ + + FTNV++KNFG D +DEKLKE+F YG S +V+ + GKS+GFGFV YE+
Sbjct: 190 VRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETH 249
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNL 313
E A+KAV +GK ++GK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+KNL
Sbjct: 250 EAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNL 309
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
D++IDDE+L++EF+ FG+I+ AK
Sbjct: 310 DETIDDEKLKEEFSSFGSISRAK 332
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 71/180 (39%), Positives = 105/180 (58%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN +D++ + + FS +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 200 NVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELG---EKAKLFTN-------VYIKNFGEDFNDEKLK 221
+G +N K+++VG+ + ER EL E+ +L +YIKN E +DEKLK
Sbjct: 260 HGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V Q +
Sbjct: 320 EEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 229 (85.7 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 60/225 (26%), Positives = 114/225 (50%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKV 171
+++ +LD + +Y F G + ++ +D S GYG+V+F A ++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N L+N K F + +R ++ G N++IKN + ++ L +F +G I
Sbjct: 80 NFDLINGK-PFRLMWSQPDDRLRKSG-----VGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 232 SYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRR 291
S +V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 134 SCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 292 FEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+R N++VKN + +DDE+L++ F+ +G S K
Sbjct: 194 ---------DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVK 229
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 148/263 (56%), Positives = 203/263 (77%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FSAFG
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG 130
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER E
Sbjct: 131 NILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 196 LGEKAKL-FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESP 253
+ + + FTNV++KN G+D +DEKLKE+F YG S +V+ + GKS+GFGFV YE+
Sbjct: 190 VRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETH 249
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNL 313
E A+KAV +GK +DGK+LYVGRAQKK ER EL+RRFE L+++ +R GV +Y+KNL
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNL 309
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
D++I+DE+L++EF+ FG+I+ AK
Sbjct: 310 DETINDEKLKEEFSSFGSISRAK 332
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 72/182 (39%), Positives = 109/182 (59%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN+ ID++ + + F +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELG---EKAKLFTN-------VYIKNFGEDFNDEKLK 221
+G ++ K+++VG+ + ER EL E+ +L +YIKN E NDEKLK
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQ 279
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V G+A+
Sbjct: 320 EEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Query: 280 KK 281
++
Sbjct: 380 RR 381
Score = 238 (88.8 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 62/225 (27%), Positives = 114/225 (50%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKV 171
+++ +LD + +Y F G + ++ +D S GYG+V+F A ++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N L+N K F + +R ++ G N++IKN + ++ L +F +G I
Sbjct: 80 NFDLINGK-PFRLMWSQPDDRLRKSG-----VGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 232 SYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRR 291
S +V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++ R
Sbjct: 134 SCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 292 FEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+R N++VKN+ D IDDE+L++ F +G S K
Sbjct: 194 ---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 148/263 (56%), Positives = 202/263 (76%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E AL+TMNFD + G+P R+MWSQ D LRKSGVGN+FIKNLDKSIDN+A++ FSAFG
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG 130
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKV D+ G SKGY +VHF++ AAN++I +NG+ LN++ V+VG+F +ER E
Sbjct: 131 NILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 196 LGEKAKL-FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESP 253
+ + + FTNV++KNFG+D +DEKLK++F YG S +V+ + GKS+GFGFV YE+
Sbjct: 190 VRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETH 249
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNL 313
E A+KAV +GK +DGK+L VGRAQKK ER EL+RRFE LK++ R GV +Y+KNL
Sbjct: 250 EAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNL 309
Query: 314 DDSIDDERLRKEFTPFGTITSAK 336
D++I+DE+L++EF+ FG+I+ AK
Sbjct: 310 DETINDEKLKEEFSLFGSISRAK 332
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 73/180 (40%), Positives = 104/180 (57%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN ID++ + FS +G S KV +D G SKG+GFV +ET EAA K++ ++
Sbjct: 200 NVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELG---EKAKLFTN-------VYIKNFGEDFNDEKLK 221
+G ++ K++ VG+ + ER EL E+ KL +YIKN E NDEKLK
Sbjct: 260 HGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLK 319
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V Q +
Sbjct: 320 EEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Score = 237 (88.5 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 63/226 (27%), Positives = 113/226 (50%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKV 171
+++ +LD + +Y F G + ++ +D S GYG+V+F A ++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 172 NGMLLNSKIVFVGKFIPRKE-REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
N L+N K + P R+ +G N++IKN + ++ L +F +G I
Sbjct: 80 NFDLINGKPFRLMWSQPDDHLRKSGVG-------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 231 TSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +V+ +D S+G+ +V ++S A +A+ NG ++ + +YVGR + ER E++
Sbjct: 133 LSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R +R N++VKN D IDDE+L+K F+ +G S K
Sbjct: 193 R---------DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVK 229
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 153/282 (54%), Positives = 201/282 (71%)
Query: 56 TCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFI 115
T LG G V P D RA+ +N+ L G+PIR+M+S RDPS+R+SG GN+FI
Sbjct: 73 TRRSLGYG--YVNFTNPQ--DAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFI 128
Query: 116 KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML 175
KNLD+SID+KA++DTFS+FG+I+SCKVA D G SKGYGFV + EE+A K+IEK+NGML
Sbjct: 129 KNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGML 188
Query: 176 LNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV 235
LN K V+VG F+ R+ER+ K K FTNVY+KN E D+ LK F YG ITS V
Sbjct: 189 LNDKQVYVGPFLRRQERDST-ANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 236 MNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEM 294
M + +GKS+GFGFV +E+ + A +AV++ NG + D K YVGRAQKK+ER EL+ R+E
Sbjct: 247 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Query: 295 LKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
E +++Q NLYVKNLD SI DE+L++ F+PFGT+TS+K
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSK 348
Score = 371 (135.7 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 83/234 (35%), Positives = 138/234 (58%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
++A++ +N L + + + +RD + K+ NV++KNL +S + + + F
Sbjct: 178 QKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGE 237
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
+G I S V +D +G SKG+GFV+FE + A +++E +NG + K +VG+ + ERE
Sbjct: 238 YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERE 297
Query: 194 KELG--------EKAKLF--TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKS 242
EL E A F +N+Y+KN +DEKLKE+F P+GT+TS +VM + +G S
Sbjct: 298 TELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS 357
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLK 296
+G GFVA+ +PE A +A+ +GK ++ K LYV AQ+K +R L+ +F ++
Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVR 411
Score = 272 (100.8 bits), Expect = 8.6e-23, P = 8.6e-23
Identities = 68/229 (29%), Positives = 125/229 (54%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKS 167
G ++++ +LD ++ + ++D F G++++ +V +D S GYG+V+F + A ++
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I+++N + L K + V + R + G N++IKN E + + L + F +
Sbjct: 94 IQELNYIPLYGKPIRV-MYSHRDPSVRRSGAG-----NIFIKNLDESIDHKALHDTFSSF 147
Query: 228 GTITSYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQ 286
G I S +V +++ G+S+G+GFV Y + E A+KA++ NG ++ K +YVG ++ ER
Sbjct: 148 GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDS 207
Query: 287 ELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
N+ + N+YVKNL +S D+ L+ F +G ITSA
Sbjct: 208 TA------------NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA 244
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 142/262 (54%), Positives = 190/262 (72%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D RA++ +N+ L RPIRIM S RDPS R SG GN+FIKNLD SIDNKA+++TFS+FG
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 160
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSCKVA D G SKGYGFV FE EE+A +I+K+NGML+N K VFVG FI R+ER ++
Sbjct: 161 TILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD 220
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
FTNVY+KN ++ +++L++ F +G I+S VM + G SR FGFV +E E
Sbjct: 221 ENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTE 280
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A AV+ NG + +LYVGRAQKK+ER +EL+R+FE +I R + QG NLY+KNLD
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLD 340
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
DS+DDE+L++ F+ +G +TS+K
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSK 362
Score = 400 (145.9 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 90/217 (41%), Positives = 126/217 (58%)
Query: 91 GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS 150
G IR RD + NV++KNL K I + TF FG I S V +D+ GNS
Sbjct: 209 GHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 151 KGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELG-----EKAKLF-- 203
+ +GFV+FE EAA ++EK+NG+ L +++VG+ + ERE+EL E+ F
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK 328
Query: 204 ---TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKA 259
N+Y+KN + +DEKLKEMF YG +TS +VM N G SRGFGFVAY +PE A +A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 260 VQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLK 296
+ NGK + K LY+ AQ+K +R L+ F ++
Sbjct: 389 LSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR 425
Score = 263 (97.6 bits), Expect = 9.1e-22, P = 9.1e-22
Identities = 65/225 (28%), Positives = 117/225 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+++ +LD + ++D F +++S +V +D+ S GY +++F A +++E +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N L + + + + ++ L K N++IKN +++ L E F +GTI
Sbjct: 110 NYTPLFDRPIRI--MLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSSFGTIL 163
Query: 232 SYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +V M+ G+S+G+GFV +E E A+ A+ NG ++ K ++VG ++ ER ++
Sbjct: 164 SCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD--- 220
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
E R N+YVKNL I ++ LRK F FG I+SA
Sbjct: 221 --ENTPTPRFT-----NVYVKNLPKEIGEDELRKTFGKFGVISSA 258
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 143/262 (54%), Positives = 192/262 (73%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A+ +N+ L G+ IRI +S RD S R+SGVGN+F+KNLDKS+DNK +++ FS G
Sbjct: 99 DAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCG 158
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+I+SCKVA D G S+GYGFV F+TE++A +IEK+NG +LN K +FVG F+ ++ERE
Sbjct: 159 TIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESA 218
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPE 254
+K K FTNVY+KN E D++LK F YG+I+S VM + DGKSR FGFV +E+PE
Sbjct: 219 -ADKMK-FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPE 276
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A +AV+A NGK+ D K YVG+AQKK+ER EL RR+E + N++ G+NLYVKNLD
Sbjct: 277 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLD 336
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
D++ DE+LR+ F FGTITS K
Sbjct: 337 DTVTDEKLRELFAEFGTITSCK 358
Score = 347 (127.2 bits), Expect = 7.2e-31, P = 7.2e-31
Identities = 82/234 (35%), Positives = 129/234 (55%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
+ A++ +N L + I + +R+ + K NV++KNL ++ + + TF
Sbjct: 188 KNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQ 247
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
+GSI S V +D G S+ +GFV+FE E A +++E +NG + K +VGK + ERE
Sbjct: 248 YGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERE 307
Query: 194 KELGEK--------AKLFT--NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKS 242
EL + F N+Y+KN + DEKL+E+F +GTITS +VM + G S
Sbjct: 308 LELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS 367
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLK 296
+G GFVA+ + A + + NGK V GK LYV AQ+K ER +L+ +F ++
Sbjct: 368 KGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
Score = 244 (91.0 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 55/193 (28%), Positives = 110/193 (56%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEK 170
++++ +LD ++ + +YD F+ ++S +V +D N S GYG+V++ + A K+++K
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N LN K++ + + R + G N+++KN + +++ L E F GTI
Sbjct: 107 LNYSYLNGKMIRI-TYSSRDSSARRSG-----VGNLFVKNLDKSVDNKTLHEAFSGCGTI 160
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL- 288
S +V + G+SRG+GFV +++ + A+ A++ NGK ++ K ++VG +K ER
Sbjct: 161 VSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAAD 220
Query: 289 KRRFEMLKIERLN 301
K +F + ++ L+
Sbjct: 221 KMKFTNVYVKNLS 233
Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
N+++KNLD ++ ++ + + F+ FG+I SCKV +D G SKG GFV F A++ + ++
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFG 212
NG ++ K ++V ++ER +L + +I G
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVG 429
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 132/193 (68%), Positives = 159/193 (82%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E ALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+F+KNLDKSI+NKA+YDT SAFG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+ILSC V DE G SKGYGFVHFET EAA ++I+K+NGMLLN + VFVG+F RKERE E
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPE 254
LG +AK F NVYIKNFGED +DE+LK++F +G S +VM ++ GKS+GFGFV++E E
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 FAEKAVQAWNGKE 267
A+KAV NGKE
Sbjct: 243 DAQKAVDEMNGKE 255
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 65/236 (27%), Positives = 122/236 (51%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS ++++ +L + +Y+ FS G ILS ++ +D S Y +V+F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
+ A +++ +N ++ K V I +R+ L + N+++KN + N++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFVKNLDKSINNKAL 115
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ +G I S V+ ++ S+G+GFV +E+ E AE+A++ NG ++G+ ++VG+ +
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 281 KAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ ER EL R + N+Y+KN + +DDERL+ F FG S K
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 134/196 (68%), Positives = 160/196 (81%)
Query: 142 VAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAK 201
V DE G SKGYGFVHFET+EAA ++IEK+NGMLLN + VFVG+F RKERE ELG +AK
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAV 260
FTNVYIKNFGED +DE+LK++F P S +VM ++ GKS+GFGFV++E E A+KAV
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 117
Query: 261 QAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDE 320
NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+ RYQGVNLYVKNLDD IDDE
Sbjct: 118 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 177
Query: 321 RLRKEFTPFGTITSAK 336
RLRKEF+PFGTITSAK
Sbjct: 178 RLRKEFSPFGTITSAK 193
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 92/231 (39%), Positives = 132/231 (57%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
ERA++ MN L R + + +R+ L R NV+IKN + +D++ + D F
Sbjct: 24 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 83
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
G LS KV DE G SKG+GFV FE E A K+++++NG LN K ++VG+ + E
Sbjct: 84 ---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 140
Query: 192 REKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
R+ EL K + N+Y+KN + +DE+L++ F P+GTITS +VM G+
Sbjct: 141 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 200
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
S+GFGFV + SPE A KAV NG+ V K LYV AQ+K ER L ++
Sbjct: 201 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 251
Score = 168 (64.2 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 46/137 (33%), Positives = 75/137 (54%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ----RDPSLRKSGV-----------G-NVFIKNLD 119
D ++A+D MN L G+ I + +Q R L++ G N+++KNLD
Sbjct: 112 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 171
Query: 120 KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
ID++ + FS FG+I S KV E G SKG+GFV F + E A K++ ++NG ++ +K
Sbjct: 172 DGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 230
Query: 180 IVFVGKFIPRKEREKEL 196
++V ++ER+ L
Sbjct: 231 PLYVALAQRKEERQAHL 247
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 130/258 (50%), Positives = 179/258 (69%)
Query: 81 LDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSC 140
++ +N+ LKG+P+RIM+S+RDPS R SG GNVF+KNLD+SIDNK + D FSAFG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 141 KVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKA 200
KVA+D G SKGYGFV F ++ + + NG L+ ++ + V F+ R + +K+
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ-----WDKS 115
Query: 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKA 259
++FTNVY+KN E D LK +F +G ITS VM + +GKSR FGFV +E E A A
Sbjct: 116 RVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTA 175
Query: 260 VQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIER-LNRYQGVNLYVKNLDDSID 318
++ NG VD K L+VGRAQ+K RT++LK +FE+ KI R + +G+NLYVKNLDDS+D
Sbjct: 176 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 235
Query: 319 DERLRKEFTPFGTITSAK 336
+ +L + F+ FGTITS K
Sbjct: 236 NTKLEELFSEFGTITSCK 253
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 71/193 (36%), Positives = 114/193 (59%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV++KNL ++ + + F FG I S V +D +G S+ +GFV+FE EAA +IEK+
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-----------NVYIKNFGEDFNDEKL 220
NG++++ K + VG+ + R ++L K +L N+Y+KN + ++ KL
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 221 KEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279
+E+F +GTITS +VM +++G S+G GFV + + E A KA+ NGK V K +YV AQ
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
Query: 280 KKAERTQELKRRF 292
K + L+ +F
Sbjct: 300 CKEQHKLHLQTQF 312
Score = 193 (73.0 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 42/94 (44%), Positives = 60/94 (63%)
Query: 101 RDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFET 160
RD RK G+ N+++KNLD S+DN + + FS FG+I SCKV G SKG GFV F T
Sbjct: 215 RDMKTRK-GM-NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFST 272
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREK 194
E A+K++ K+NG ++ +K ++V KE+ K
Sbjct: 273 SEEASKAMLKMNGKMVGNKPIYVS-LAQCKEQHK 305
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 111/191 (58%), Positives = 149/191 (78%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEK 170
G ++IKNL++SIDNKA+YDTFS FG+IL+C VA+DE GNS+GYGFVHF++EEAA +IEK
Sbjct: 113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEK 172
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
VNGML N++ V V KFIPR++RE+E KA F N+Y+KN E+F ++ L+EMFEPYG I
Sbjct: 173 VNGMLCNNQKVHVVKFIPRRDREQE---KATHFKNLYVKNLSEEFTEQHLREMFEPYGRI 229
Query: 231 TSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEV-DGKILYVGRAQKKAERTQEL 288
TS+++M + +G+SR FGFVAYE+P+ A AV +GK++ D K LYV RA KAER QE+
Sbjct: 230 TSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEI 289
Query: 289 KRRFEMLKIER 299
R+ E K ++
Sbjct: 290 NRKLEERKRQK 300
Score = 176 (67.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 43/132 (32%), Positives = 70/132 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWN 264
+YIKN +++ + + F +G I + V + DG SRG+GFV ++S E A A++ N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRK 324
G + + ++V + + +R QE F+ NLYVKNL + ++ LR+
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 325 EFTPFGTITSAK 336
F P+G ITS K
Sbjct: 222 MFEPYGRITSHK 233
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 571 (206.1 bits), Expect = 6.9e-55, P = 6.9e-55
Identities = 112/201 (55%), Positives = 146/201 (72%)
Query: 74 MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
+ D ERALDT+N+ +KG+P R+MWS RDPSLRKSG GN+F+KNLDKSIDNKA++DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG+ILSCKVA DE G SK YGFVH+E EE+A ++IEKVNG+ L SK V+VG FI + ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA 186
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESP 253
K FTN+Y+KNF + + L+++F PYG ITS ++ D K+R F F+ Y
Sbjct: 187 TN---DTK-FTNLYVKNFPDSVTETHLRQLFNPYGEITSM-IVKMDNKNRKFCFINYADA 241
Query: 254 EFAEKAVQAWNGKEV--DGKI 272
E A+ A+ NGK++ DG+I
Sbjct: 242 ESAKNAMDNLNGKKITDDGQI 262
Score = 245 (91.3 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 62/225 (27%), Positives = 116/225 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ +L++ + +Y+ F+ G + S +V +D S GY +V++ A ++++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N + + + R+ L + N+++KN + +++ L + F +G I
Sbjct: 77 LNYTNIKGQPAR----LMWSHRDPSLRKSGT--GNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ GKS+ +GFV YE E A++A++ NG ++ K +YVG KK+ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--- 187
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
N + NLYVKN DS+ + LR+ F P+G ITS
Sbjct: 188 -----------NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITS 221
Score = 217 (81.4 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK-SRGFGFVAYESPEFAEKAVQAW 263
N+YIKN + +D L+E+FEP+GTITS +VM ++ + S+GFGFV + S E A KAV
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEM 294
+ K ++GK LYVG A+K+ +R L++RF M
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRFRM 541
Score = 205 (77.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 55/133 (41%), Positives = 64/133 (48%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
TN G N L E G S NN G S A + A
Sbjct: 355 TNTSNTTTGSSNNSINLNENNNTAGNNNSTNNNNNSGSSMNNAGSAKKDETAASDCADTP 414
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLR 323
N ILYVG Q +A R LK +F+ L +E N++QGVNLY+KNLDD IDD LR
Sbjct: 415 N-------ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLR 467
Query: 324 KEFTPFGTITSAK 336
+ F PFGTITSAK
Sbjct: 468 ELFEPFGTITSAK 480
Score = 183 (69.5 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 37/97 (38%), Positives = 64/97 (65%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAAN 165
+ GV N++IKNLD ID+ + + F FG+I S KV +DE+ SKG+GFV F ++E AN
Sbjct: 446 KHQGV-NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKL 202
K++ +++ ++N K ++VG R++R L ++ ++
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 541
Score = 86 (35.3 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
N+++KN S+ + F+ +G I S V D + N K + F+++ E+A +++ +
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK-NRK-FCFINYADAESAKNAMDNL 251
Query: 172 NGMLLNSKIVFVGKFIPRKE 191
NG + + P+KE
Sbjct: 252 NGKKITDDGQIDETYDPKKE 271
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 571 (206.1 bits), Expect = 6.9e-55, P = 6.9e-55
Identities = 112/201 (55%), Positives = 146/201 (72%)
Query: 74 MLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 133
+ D ERALDT+N+ +KG+P R+MWS RDPSLRKSG GN+F+KNLDKSIDNKA++DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 134 FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
FG+ILSCKVA DE G SK YGFVH+E EE+A ++IEKVNG+ L SK V+VG FI + ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA 186
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESP 253
K FTN+Y+KNF + + L+++F PYG ITS ++ D K+R F F+ Y
Sbjct: 187 TN---DTK-FTNLYVKNFPDSVTETHLRQLFNPYGEITSM-IVKMDNKNRKFCFINYADA 241
Query: 254 EFAEKAVQAWNGKEV--DGKI 272
E A+ A+ NGK++ DG+I
Sbjct: 242 ESAKNAMDNLNGKKITDDGQI 262
Score = 245 (91.3 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 62/225 (27%), Positives = 116/225 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ +L++ + +Y+ F+ G + S +V +D S GY +V++ A ++++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N + + + R+ L + N+++KN + +++ L + F +G I
Sbjct: 77 LNYTNIKGQPAR----LMWSHRDPSLRKSGT--GNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 231 TSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELK 289
S +V ++ GKS+ +GFV YE E A++A++ NG ++ K +YVG KK+ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--- 187
Query: 290 RRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
N + NLYVKN DS+ + LR+ F P+G ITS
Sbjct: 188 -----------NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITS 221
Score = 217 (81.4 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK-SRGFGFVAYESPEFAEKAVQAW 263
N+YIKN + +D L+E+FEP+GTITS +VM ++ + S+GFGFV + S E A KAV
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEM 294
+ K ++GK LYVG A+K+ +R L++RF M
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRFRM 541
Score = 205 (77.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 55/133 (41%), Positives = 64/133 (48%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
TN G N L E G S NN G S A + A
Sbjct: 355 TNTSNTTTGSSNNSINLNENNNTAGNNNSTNNNNNSGSSMNNAGSAKKDETAASDCADTP 414
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLR 323
N ILYVG Q +A R LK +F+ L +E N++QGVNLY+KNLDD IDD LR
Sbjct: 415 N-------ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLR 467
Query: 324 KEFTPFGTITSAK 336
+ F PFGTITSAK
Sbjct: 468 ELFEPFGTITSAK 480
Score = 183 (69.5 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 37/97 (38%), Positives = 64/97 (65%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAAN 165
+ GV N++IKNLD ID+ + + F FG+I S KV +DE+ SKG+GFV F ++E AN
Sbjct: 446 KHQGV-NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKL 202
K++ +++ ++N K ++VG R++R L ++ ++
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 541
Score = 86 (35.3 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
N+++KN S+ + F+ +G I S V D + N K + F+++ E+A +++ +
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK-NRK-FCFINYADAESAKNAMDNL 251
Query: 172 NGMLLNSKIVFVGKFIPRKE 191
NG + + P+KE
Sbjct: 252 NGKKITDDGQIDETYDPKKE 271
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 113/262 (43%), Positives = 169/262 (64%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D A++ N L G+ IR+MWS R P R++GVGNVF+KNL +S+ N + D F FG
Sbjct: 77 DANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFG 136
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
+I+SCKVA E G S+GYGFV FE E+AA+ +I+ +N ++ K ++VGKF+ + +R K
Sbjct: 137 NIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP 196
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK-SRGFGFVAYESPE 254
EK +TN+Y+KN D +++ L+E F +G I S + ++ + RG+ FV +++PE
Sbjct: 197 -EEK---YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPE 252
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLD 314
A +A + NG + K LYVGRAQKKAER Q L+ +F+ E+ + N+YVKN++
Sbjct: 253 DARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVN 312
Query: 315 DSIDDERLRKEFTPFGTITSAK 336
++ +E LRK F+ GTITS K
Sbjct: 313 VAVTEEELRKHFSQCGTITSTK 334
Score = 339 (124.4 bits), Expect = 3.9e-30, P = 3.9e-30
Identities = 79/226 (34%), Positives = 129/226 (57%)
Query: 80 ALDTMNFDALKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSI 137
A+ T+N + + I + + D + N+++KNLD + + + F+ FG I
Sbjct: 168 AIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Query: 138 LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE---- 193
+S +A+DE +GY FV+F+ E A ++ E VNG SK ++VG+ + ERE
Sbjct: 228 VSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLR 287
Query: 194 ---KELGEKAKLF---TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFG 246
KE E+ K+ +N+Y+KN +E+L++ F GTITS ++M ++ GKS+GFG
Sbjct: 288 EQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFG 347
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRF 292
FV + +PE A AV+ ++G+ GK LYV AQKK +R +L+ +F
Sbjct: 348 FVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
Score = 265 (98.3 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 63/193 (32%), Positives = 107/193 (55%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
++++ +L S+ +YD F+ F S+ S ++ +D G S YG+ +F + + AN +IEK
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 171 VNGMLLNSKIVFVGKFIPRKE-REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229
N LLN K++ V + + R +G NV++KN E + L++MF+ +G
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG-------NVFVKNLPESVTNAVLQDMFKKFGN 137
Query: 230 ITSYRVMN-NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
I S +V DGKSRG+GFV +E + A A+Q N V K +YVG+ KK +R +
Sbjct: 138 IVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP- 196
Query: 289 KRRFEMLKIERLN 301
+ ++ L ++ L+
Sbjct: 197 EEKYTNLYMKNLD 209
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 107/156 (68%), Positives = 128/156 (82%)
Query: 182 FVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-G 240
FVG+F RKERE ELG +AK FTNVYIKNFGED +DE+LKE+F +G S +VM ++ G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERL 300
KS+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 301 NRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 156
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 82/191 (42%), Positives = 117/191 (61%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV+IKN + +D++ + + F FG LS KV DE G SKG+GFV FE E A K+++++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDFNDEKLK 221
NG LN K ++VG+ + ER+ EL K + N+Y+KN + +DE+L+
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 143
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+ F P+GTITS +VM G+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K
Sbjct: 144 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 203
Query: 282 AERTQELKRRF 292
ER L ++
Sbjct: 204 EERQAHLTNQY 214
Score = 168 (64.2 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 46/137 (33%), Positives = 75/137 (54%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ----RDPSLRKSGV-----------G-NVFIKNLD 119
D ++A+D MN L G+ I + +Q R L++ G N+++KNLD
Sbjct: 75 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 134
Query: 120 KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
ID++ + FS FG+I S KV E G SKG+GFV F + E A K++ ++NG ++ +K
Sbjct: 135 DGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 193
Query: 180 IVFVGKFIPRKEREKEL 196
++V ++ER+ L
Sbjct: 194 PLYVALAQRKEERQAHL 210
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 106/156 (67%), Positives = 128/156 (82%)
Query: 182 FVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-G 240
FVG+F RKERE ELG +AK FTNVYIKNFGED +DE+LK++F +G S +VM ++ G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERL 300
KS+GFGFV++E E A+KAV NGKE++GK +YVGRAQKK ER ELKR+FE +K +R+
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 301 NRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSAK
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 157
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 83/191 (43%), Positives = 117/191 (61%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV+IKN + +D++ + D F FG LS KV DE G SKG+GFV FE E A K+++++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDFNDEKLK 221
NG LN K ++VG+ + ER+ EL K + N+Y+KN + +DE+L+
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 144
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+ F P+GTITS +VM G+S+GFGFV + SPE A KAV NG+ V K LYV AQ+K
Sbjct: 145 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 204
Query: 282 AERTQELKRRF 292
ER L ++
Sbjct: 205 EERQAHLTNQY 215
Score = 168 (64.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 46/137 (33%), Positives = 75/137 (54%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ----RDPSLRKSGV-----------G-NVFIKNLD 119
D ++A+D MN L G+ I + +Q R L++ G N+++KNLD
Sbjct: 76 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 135
Query: 120 KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
ID++ + FS FG+I S KV E G SKG+GFV F + E A K++ ++NG ++ +K
Sbjct: 136 DGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 194
Query: 180 IVFVGKFIPRKEREKEL 196
++V ++ER+ L
Sbjct: 195 PLYVALAQRKEERQAHL 211
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 515 (186.3 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 103/156 (66%), Positives = 123/156 (78%)
Query: 142 VAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAK 201
V DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + VFVG+F RKERE ELG KAK
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAV 260
FTNVYIKNFGE+ +DE LKE+F +G S +VM + +GKS+GFGFV+YE E A KAV
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161
Query: 261 QAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLK 296
+ NGKE+ GKI++VGRAQKK ER ELKR+FE LK
Sbjct: 162 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 197
Score = 218 (81.8 bits), Expect = 7.0e-18, P = 7.0e-18
Identities = 47/128 (36%), Positives = 77/128 (60%)
Query: 78 ERALDTMNFDALKGRPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKAMYDTF 131
++A++ MN L R + + +R+ L + NV+IKN + +D++++ + F
Sbjct: 65 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 124
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S FG LS KV +D G SKG+GFV +E E ANK++E++NG ++ KI+FVG+ + E
Sbjct: 125 SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 184
Query: 192 REKELGEK 199
R+ EL K
Sbjct: 185 RQAELKRK 192
Score = 145 (56.1 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 32/102 (31%), Positives = 59/102 (57%)
Query: 235 VMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEM 294
V+ ++ S+G+ FV +E+ E A+KA++ NG ++ + ++VGR + + ER EL + +
Sbjct: 43 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK- 101
Query: 295 LKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ N+Y+KN + +DDE L++ F+ FG S K
Sbjct: 102 ---------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 134
Score = 39 (18.8 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 134 FGSILSCK 141
FG+ILSCK
Sbjct: 2 FGNILSCK 9
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 116/274 (42%), Positives = 171/274 (62%)
Query: 67 VQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRK---SGVGNVFIKNLDKSID 123
+ P+ A+ +N LKG+ +RIMWSQRD + R+ +G N+++KNLD SI
Sbjct: 67 INFDSPF--SASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSIT 124
Query: 124 NKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183
+ + F FGSILSCKV + E G SKG+GFV F+TE++A + ++G ++ K +FV
Sbjct: 125 SSCLERMFCPFGSILSCKVVE-ENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 184 GKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKS 242
KFI + ER G + TNVY+KN E D+ L +F YGT++S VM + G+S
Sbjct: 184 AKFINKDERAAMAGNQDS--TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRS 241
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNR 302
RGFGFV + +PE A+KA+++ G ++ K L+VG+A KK ER + LK++F I + N
Sbjct: 242 RGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNM 301
Query: 303 YQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ NLYVKNL +S+++ RLR+ F +G I SAK
Sbjct: 302 -RWSNLYVKNLSESMNETRLREIFGCYGQIVSAK 334
Score = 331 (121.6 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 72/192 (37%), Positives = 123/192 (64%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NV++KNL +++ + ++ FS +G++ S V +D G S+G+GFV+F E A K++E +
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEK------AK---LFTNVYIKNFGEDFNDEKLKE 222
G+ L SK +FVGK + + ER + L +K AK ++N+Y+KN E N+ +L+E
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 223 MFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+F YG I S +VM + +G+S+GFGFV + + E +++A + NG VDGK + V A++K
Sbjct: 323 IFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382
Query: 282 AERTQELKRRFE 293
+R + L++ F+
Sbjct: 383 EDRIKRLQQYFQ 394
Score = 240 (89.5 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 62/229 (27%), Positives = 116/229 (50%)
Query: 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANK 166
S G++++ +L + K + D FS ++S + ++ G S Y +++F++ +A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKL-FTNVYIKNFGEDFNDEKLKEMFE 225
++ ++N L K + I +R+ + + F N+Y+KN L+ MF
Sbjct: 78 AMTRLNHSDLKGKAMR----IMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC 133
Query: 226 PYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT 285
P+G+I S +V+ +G+S+GFGFV +++ + A A A +G V GK L+V + K ER
Sbjct: 134 PFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERA 193
Query: 286 QELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
N+YVKNL +++ D+ L F+ +GT++S
Sbjct: 194 A------------MAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSS 230
Score = 142 (55.0 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 43/144 (29%), Positives = 71/144 (49%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
P++R S N+++KNL +S++ + + F +G I+S KV E G SKG+GFV F E
Sbjct: 299 PNMRWS---NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCE 355
Query: 163 AANKSIEKVNGMLLNSKIVFVGKFIPRKE-REKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
+ ++ +NG L++ K + V + RKE R K L + + Y + + +
Sbjct: 356 ESKQAKRYLNGFLVDGKPIVV-RVAERKEDRIKRLQQYFQAQPRQYTQAPSAPSPAQPVL 414
Query: 222 EM-------FEPYGTITSYRVMNN 238
F+P+ TSY M N
Sbjct: 415 SYVSSSYGCFQPFQVGTSYYYMGN 438
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 95/156 (60%), Positives = 122/156 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP +D +RAL+T+NFD +KGRP+RIMWSQRDPSLRKSGVGNVFIKNL K+I
Sbjct: 44 GYAYVNYQQP--VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTI 101
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+Y+ FSAFG+ILSCKVA DE+G KGYGFVHF+ +E+A ++I+ +NGM LN + +F
Sbjct: 102 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIF 160
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDE 218
VG+F KERE E G A+ T+ +K+F ED ++E
Sbjct: 161 VGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 211 (79.3 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 49/179 (27%), Positives = 98/179 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS ++ +D+ S GY +V+++ A +++
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
E +N ++ + V I +R+ L + NV+IKN G+ +++ L +F +G
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSG--VGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
I S +V ++ +G+GFV ++ E AE+A+ A NG ++ + ++VGR + ER E
Sbjct: 115 NILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + + + L E F P G I S R+ + +S G+ +V Y+ P A++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDER 321
N + G+ + + +Q R L++ GV N+++KNL +ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQ----RDPSLRK-------------SGVGNVFIKNLGKTIDNKA 105
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 106 LYNIFSAFGNILSCK 120
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 95/156 (60%), Positives = 122/156 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP +D +RAL+T+NFD +KGRP+RIMWSQRDPSLRKSGVGNVFIKNL K+I
Sbjct: 44 GYAYVNYQQP--VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTI 101
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+Y+ FSAFG+ILSCKVA DE+G KGYGFVHF+ +E+A ++I+ +NGM LN + +F
Sbjct: 102 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIF 160
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDE 218
VG+F KERE E G A+ T+ +K+F ED ++E
Sbjct: 161 VGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 211 (79.3 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 49/179 (27%), Positives = 98/179 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS ++ +D+ S GY +V+++ A +++
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
E +N ++ + V I +R+ L + NV+IKN G+ +++ L +F +G
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSG--VGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
I S +V ++ +G+GFV ++ E AE+A+ A NG ++ + ++VGR + ER E
Sbjct: 115 NILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + + + L E F P G I S R+ + +S G+ +V Y+ P A++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDER 321
N + G+ + + +Q R L++ GV N+++KNL +ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQ----RDPSLRK-------------SGVGNVFIKNLGKTIDNKA 105
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 106 LYNIFSAFGNILSCK 120
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 95/156 (60%), Positives = 122/156 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP +D +RAL+T+NFD +KGRP+RIMWSQRDPSLRKSGVGNVFIKNL K+I
Sbjct: 44 GYAYVNYQQP--VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTI 101
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+Y+ FSAFG+ILSCKVA DE+G KGYGFVHF+ +E+A ++I+ +NGM LN + +F
Sbjct: 102 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIF 160
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDE 218
VG+F KERE E G A+ T+ +K+F ED ++E
Sbjct: 161 VGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 209 (78.6 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 49/179 (27%), Positives = 98/179 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS ++ +D+ S GY +V+++ A +++
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
E +N ++ + V I +R+ L + NV+IKN G+ +++ L +F +G
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSG--VGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
I S +V ++ +G+GFV ++ E AE+A+ A NG ++ + ++VGR + ER E
Sbjct: 115 NILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 110 (43.8 bits), Expect = 0.00045, P = 0.00045
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + + + L E F P G I S R+ + +S G+ +V Y+ P A++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDER 321
N + G+ + + +Q R L++ GV N+++KNL +ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQ----RDPSLRK-------------SGVGNVFIKNLGKTIDNKA 105
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 106 LYNIFSAFGNILSCK 120
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 95/156 (60%), Positives = 122/156 (78%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP +D +RAL+T+NFD +KGRP+RIMWSQRDPSLRKSGVGNVFIKNL K+I
Sbjct: 44 GYAYVNYQQP--VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTI 101
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+Y+ FSAFG+ILSCKVA DE+G KGYGFVHF+ +E+A ++I+ +NGM LN + +F
Sbjct: 102 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIF 160
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDE 218
VG+F KERE E G A+ T+ +K+F ED ++E
Sbjct: 161 VGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 207 (77.9 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 48/179 (26%), Positives = 97/179 (54%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G ILS ++ +D+ S GY +V+++ A +++
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
E +N ++ + V I +R+ L + NV+IKN G+ +++ L +F +G
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSG--VGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
I S +V ++ +G+GFV ++ E AE+A+ NG ++ + ++VGR + ER E
Sbjct: 115 NILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + + + L E F P G I S R+ + +S G+ +V Y+ P A++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDER 321
N + G+ + + +Q R L++ GV N+++KNL +ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQ----RDPSLRK-------------SGVGNVFIKNLGKTIDNKA 105
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 106 LYNIFSAFGNILSCK 120
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 95/156 (60%), Positives = 120/156 (76%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP +D +RAL+TMNFD + GRP+RIMWSQRDPSLRKSGVGNVFIKNL K+I
Sbjct: 44 GYAYVNYQQP--VDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTI 101
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVF 182
DNKA+Y+ FSAFG+ILSCKVA DE+G KGYGFVHF+ +E+A ++I+ +NGM LN + +F
Sbjct: 102 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIF 160
Query: 183 VGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDE 218
VG+F KERE E G A+ T+ K+F +D +DE
Sbjct: 161 VGRFKSHKEREAERGAWARQSTSADFKDFDDDSDDE 196
Score = 215 (80.7 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 58/210 (27%), Positives = 109/210 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
++++ +L + +Y+ FS G ILS ++ +D+ S GY +V+++ A +++E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+N ++N + V I +R+ L + NV+IKN G+ +++ L +F +G I
Sbjct: 63 MNFDVINGRPVR----IMWSQRDPSLRKSG--VGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 231 TSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
S +V ++ +G+GFV ++ E AE+A+ A NG ++ + ++VGR + ER E
Sbjct: 117 LSCKVACDEKGPKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE--- 173
Query: 291 RFEMLKIERLNRYQGVNLYVKNLDDSIDDE 320
R + Q + K+ DD DDE
Sbjct: 174 RGAWAR-------QSTSADFKDFDDDSDDE 196
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 36/135 (26%), Positives = 67/135 (49%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + + + L E F P G I S R+ + +S G+ +V Y+ P A++A++
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDER 321
N ++G+ + + +Q R L++ GV N+++KNL +ID++
Sbjct: 63 MNFDVINGRPVRIMWSQ----RDPSLRK-------------SGVGNVFIKNLGKTIDNKA 105
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 106 LYNIFSAFGNILSCK 120
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 488 (176.8 bits), Expect = 6.5e-46, P = 6.5e-46
Identities = 125/348 (35%), Positives = 190/348 (54%)
Query: 7 VQLSEEGIIIPKHNVATR---ELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGSG 63
+ +S G P H + + +L+A V E + L S + N + S + C +
Sbjct: 169 LSMSPIGAYQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIA----SIHVCRDSNT- 223
Query: 64 AILVQLGQPYML-----DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNL 118
L LG Y+ D ERALDT+N+ + G+P RIMWS RDP+ RK+ VGN+F+KNL
Sbjct: 224 --LRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNL 281
Query: 119 DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNS 178
+K +DN +YDTFS+FG+ILSCKV + E+G SKGYG+VHFET ++A K+IEKVNG L+
Sbjct: 282 EKGVDNAMLYDTFSSFGNILSCKV-EFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILG 340
Query: 179 KIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK-EMFEPYGTITSYRVMN 237
K + V +F+ + ER K + V+ +N E E L+ E+ +G I S ++
Sbjct: 341 KPINVERFVSKVERYK-------VENKVFFRNADESITIEILQQELSNRFGEIESC-ILK 392
Query: 238 ND--GKSRGFGFVAYESPEFAEKAVQAWNG---KEVDGKILYVGRAQKKAERTQELKRRF 292
ND GKS+G G V +++ E A+K + +DG + +
Sbjct: 393 NDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDR 452
Query: 293 EMLKIERLNRYQ----GVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
K+ER Y+ ++L++ N+D+SID + +++EF GTI K
Sbjct: 453 IKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIK 500
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 39/126 (30%), Positives = 66/126 (52%)
Query: 89 LKGRPIRI--MWS--QRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVA 143
+ G+PI I + S +R RK ++FI N+D+SID + + F+ G+I+ K+
Sbjct: 443 INGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIV 502
Query: 144 QDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE---KELGEKA 200
QDE +KG+GF+ F + A K+++ +NG SK + V F + + K G
Sbjct: 503 QDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVS-FSNKDNNQINNKLNGNST 561
Query: 201 KLFTNV 206
K+ N+
Sbjct: 562 KITKNI 567
Score = 121 (47.7 bits), Expect = 0.00037, P = 0.00037
Identities = 27/106 (25%), Positives = 57/106 (53%)
Query: 176 LNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV 235
+N K + + + + ER E +K + ++I N E + + +KE F +GTI ++
Sbjct: 443 INGKPITIDRIKSKVERFTEYRKKTTDLS-LFINNIDESIDRDLIKEEFAKHGTIIGIKI 501
Query: 236 MNNDG-KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+ ++ +++GFGF+++ + A+KA+ + NG K + V + K
Sbjct: 502 VQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNK 547
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 88/106 (83%), Positives = 97/106 (91%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA+YDTFSAFG
Sbjct: 8 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 67
Query: 136 SILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV 181
+ILSCKV DE G SKGY FVHFET+EAA+K+IEK+NGMLLN + V
Sbjct: 68 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 122 (48.0 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 29/109 (26%), Positives = 60/109 (55%)
Query: 157 HFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216
+F+ A ++++ +N ++ K + I +R+ L + NV+IKN + +
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSID 55
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
++ L + F +G I S +V+ ++ S+G+ FV +E+ E A+KA++ NG
Sbjct: 56 NKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 104
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 87/168 (51%), Positives = 127/168 (75%)
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKL-FTNVYIKNFGEDFNDEKLKEMFEPYGT 229
+NG+ LN++ V+VG+F +ER E+ + + FTNV++KN G+D +DEKLKE+F YG
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 230 ITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQEL 288
S +V+ + GKS+GFGFV YE+ E A+KAV +GK +DGK+LYVGRAQKK ER EL
Sbjct: 61 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 120
Query: 289 KRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RRFE L+++ +R GV +Y+KNLD++I+DE+L++EF+ FG+I+ AK
Sbjct: 121 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAK 168
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 72/182 (39%), Positives = 109/182 (59%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+KN+ ID++ + + F +G S KV +D G SKG+GFV +ET EAA K++ +
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELG---EKAKLFTN-------VYIKNFGEDFNDEKLK 221
+G ++ K+++VG+ + ER EL E+ +L +YIKN E NDEKLK
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 155
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQ 279
E F +G+I+ +VM G+ +GFG V + S E A KAV NG+ V K L+V G+A+
Sbjct: 156 EEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Query: 280 KK 281
++
Sbjct: 216 RR 217
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 80/121 (66%), Positives = 99/121 (81%)
Query: 217 DEKLKEMFEPYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
DE+LK++F +G S +VM ++ GKS+GFGFV++E E A+KAV NGKE++GK +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 276 GRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
GRAQKK ER ELKR+FE +K +R+ RYQGVNLYVKNLDD IDDERLRKEF+PFGTITSA
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 336 K 336
K
Sbjct: 122 K 122
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 48/119 (40%), Positives = 71/119 (59%)
Query: 124 NKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183
++ + D F FG LS KV DE G SKG+GFV FE E A K+++++NG LN K ++V
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 184 GKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G+ + ER+ EL K + N+Y+KN + +DE+L++ F P+GTITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 120
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 80/104 (76%), Positives = 88/104 (84%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 8 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 65
Query: 123 DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
DNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+EAA +
Sbjct: 66 DNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
Score = 131 (51.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 31/109 (28%), Positives = 61/109 (55%)
Query: 150 SKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIK 209
S GY +V+F+ A ++++ +N ++ K V I +R+ L + N++IK
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIK 59
Query: 210 NFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEK 258
N + +++ L + F +G I S +V+ ++ S+G+GFV +E+ E AE+
Sbjct: 60 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAER 108
Score = 96 (38.9 bits), Expect = 0.00030, P = 0.00030
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERL 300
+S G+ +V ++ P AE+A+ N + GK + + +Q R L++
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ----RDPSLRK---------- 50
Query: 301 NRYQGV-NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
GV N+++KNLD SID++ L F+ FG I S K
Sbjct: 51 ---SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 84
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 74/139 (53%), Positives = 96/139 (69%)
Query: 101 RDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFET 160
RD R+S +G ++ N + D + DT + F I V DE G SKGYGFVHFET
Sbjct: 39 RDMITRRS-LGYAYV-NFQQPADAERALDTMN-FDVIKGKPVVCDENG-SKGYGFVHFET 94
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
+EAA ++IEK+NGMLLN + VFVG+F RKERE ELG +AK FTNVYIKNFGED +DE+L
Sbjct: 95 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 154
Query: 221 KEMFEPYGTITSYRVMNND 239
K++F +G S +VM ++
Sbjct: 155 KDLFGKFGPALSVKVMTDE 173
Score = 159 (61.0 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 40/130 (30%), Positives = 70/130 (53%)
Query: 207 YIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGK 266
Y+ NF + + E+ + + I V+ ++ S+G+GFV +E+ E AE+A++ NG
Sbjct: 51 YV-NFQQPADAERALDTMN-FDVIKGKPVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 108
Query: 267 EVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEF 326
++ + ++VGR + + ER EL R + + N+Y+KN + +DDERL+ F
Sbjct: 109 LLNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLF 158
Query: 327 TPFGTITSAK 336
FG S K
Sbjct: 159 GKFGPALSVK 168
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 64/79 (81%), Positives = 68/79 (86%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCK 141
DNKA+YDTFSAFG+ILSCK
Sbjct: 111 DNKALYDTFSAFGNILSCK 129
Score = 132 (51.5 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 40/135 (29%), Positives = 66/135 (48%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + D + L E F P G + S RV + +S G+ +V ++ P AE+A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDER 321
N + GK + + +Q R L++ GV N+++KNLD SID++
Sbjct: 72 MNFDVIKGKPIRIMWSQ----RDPSLRK-------------SGVGNVFIKNLDKSIDNKA 114
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 115 LYDTFSAFGNILSCK 129
Score = 119 (46.9 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 30/124 (24%), Positives = 63/124 (50%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSI 168
+ ++++ +L + +Y+ FS G +LS +V +D S GY +V+F+ A +++
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
+ +N ++ K + I +R+ L + NV+IKN + +++ L + F +G
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSG--VGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 229 TITS 232
I S
Sbjct: 124 NILS 127
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 62/79 (78%), Positives = 68/79 (86%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDTFSAFGSILSCK 141
DNKA+YDTFSAFG+ILSCK
Sbjct: 111 DNKALYDTFSAFGNILSCK 129
Score = 132 (51.5 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 41/135 (30%), Positives = 66/135 (48%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + D + L E F P G I S RV + +S G+ +V ++ P AE+A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGV-NLYVKNLDDSIDDER 321
N + GK + + +Q R L++ GV N+++KNLD SID++
Sbjct: 72 MNFDVIKGKPVRIMWSQ----RDPSLRK-------------SGVGNIFIKNLDKSIDNKA 114
Query: 322 LRKEFTPFGTITSAK 336
L F+ FG I S K
Sbjct: 115 LYDTFSAFGNILSCK 129
Score = 124 (48.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 33/132 (25%), Positives = 66/132 (50%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Query: 221 KEMFEPYGTITS 232
+ F +G I S
Sbjct: 116 YDTFSAFGNILS 127
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 58/79 (73%), Positives = 70/79 (88%)
Query: 258 KAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSI 317
KAV+ NGKE+ GK ++VGRAQKK ER ELKR+FE LK ER++RYQGVNLY+KNLDD+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 318 DDERLRKEFTPFGTITSAK 336
DDE+LRKEF+PFG+ITSAK
Sbjct: 61 DDEKLRKEFSPFGSITSAK 79
Score = 267 (99.0 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 58/137 (42%), Positives = 84/137 (61%)
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLF----------TNVYIKNFGEDF 215
K++E++NG ++ K +FVG+ + ER+ EL K + N+YIKN +
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 216 NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
+DEKL++ F P+G+ITS +VM DG+S+GFGFV + SPE A KAV NG+ V K LYV
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 276 GRAQKKAERTQELKRRF 292
AQ+K ER L ++
Sbjct: 121 ALAQRKEERKAHLTNQY 137
Score = 180 (68.4 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 41/89 (46%), Positives = 57/89 (64%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAAN 165
R GV N++IKNLD +ID++ + FS FGSI S KV E G SKG+GFV F + E A
Sbjct: 45 RYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEAT 102
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREK 194
K++ ++NG ++ SK ++V RKE K
Sbjct: 103 KAVTEMNGRIVGSKPLYVA-LAQRKEERK 130
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 52/68 (76%), Positives = 57/68 (83%)
Query: 63 GAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 122
G V QP D ERALDTMNFD +KG+P+RIMWSQRDPSLRKSGVGN+FIKNLDKSI
Sbjct: 53 GYAYVNFQQP--ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 110
Query: 123 DNKAMYDT 130
DNKA+YDT
Sbjct: 111 DNKALYDT 118
Score = 104 (41.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/120 (24%), Positives = 60/120 (50%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFET 160
+PS + ++++ +L + +Y+ FS G ILS +V +D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
A ++++ +N ++ K V I +R+ L + N++IKN + +++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSG--VGNIFIKNLDKSIDNKAL 115
Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQA 262
++Y+ + D + L E F P G I S RV + +S G+ +V ++ P AE+A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERL 322
N + GK + + +Q R L++ G N+++KNLD SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQ----RDPSLRKSGV-----------G-NIFIKNLDKSIDNKAL 115
>UNIPROTKB|I3LAI4 [details] [associations]
symbol:BTBD9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007155 "cell adhesion" evidence=IEA]
InterPro:IPR000421 Pfam:PF00754 GO:GO:0007155 InterPro:IPR008979
SUPFAM:SSF49785 GeneTree:ENSGT00550000074511 EMBL:CT737349
EMBL:CT797469 Ensembl:ENSSSCT00000026749 OMA:PRYIRIV Uniprot:I3LAI4
Length = 228
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 49/81 (60%), Positives = 63/81 (77%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+T +T L E+G+I+P NVAT A V+EGVSRS ++L++G+T YDWDSGYTCHQL
Sbjct: 24 MFTNKTFTL-EKGLIVPMENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQL 82
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI+VQL QPYM+ + R L
Sbjct: 83 GSGAIVVQLAQPYMIGSIRLL 103
>ZFIN|ZDB-GENE-040704-39 [details] [associations]
symbol:btbd9 "BTB (POZ) domain containing 9"
species:7955 "Danio rerio" [GO:0007155 "cell adhesion"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000210 InterPro:IPR000421 InterPro:IPR013069
Pfam:PF00651 Pfam:PF00754 PROSITE:PS50097 SMART:SM00225
ZFIN:ZDB-GENE-040704-39 GO:GO:0007155 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 InterPro:IPR008979
SUPFAM:SSF49785 InterPro:IPR011705 Pfam:PF07707 SMART:SM00875
CTD:114781 HOVERGEN:HBG050744 KO:K10481 EMBL:BC074031
IPI:IPI00896971 RefSeq:NP_001002198.1 UniGene:Dr.161863
ProteinModelPortal:Q6GML3 GeneID:557659 KEGG:dre:557659
InParanoid:Q6GML3 NextBio:20882092 ArrayExpress:Q6GML3
Uniprot:Q6GML3
Length = 602
Score = 255 (94.8 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 49/81 (60%), Positives = 63/81 (77%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
MYT + L E+G+++P NVAT + A VVEGVSRS ++L++G+T YDWDSGYTCHQL
Sbjct: 410 MYTLRPFTL-EKGLLVPTENVATVQACASVVEGVSRSRNALLNGDTSHYDWDSGYTCHQL 468
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI++QL QPYML + R L
Sbjct: 469 GSGAIVIQLAQPYMLGSMRLL 489
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 4 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL--- 60
++ + L+ G++IP+ N+AT + A VV+G +S +L+DG+T YD D G++ H +
Sbjct: 261 SRDMDLNYRGMLIPEENIATMKHGAVVVKGELKS--ALLDGDTQNYDLDHGFSRHPIEEE 318
Query: 61 GSGA-ILVQLGQPYMLDTERAL 81
G A I V+LGQP +++ R L
Sbjct: 319 GRAAGIQVRLGQPSIVNHIRLL 340
>UNIPROTKB|Q96Q07 [details] [associations]
symbol:BTBD9 "BTB/POZ domain-containing protein 9"
species:9606 "Homo sapiens" [GO:0007155 "cell adhesion"
evidence=IEA] InterPro:IPR000210 InterPro:IPR000421
InterPro:IPR013069 Pfam:PF00651 Pfam:PF00754 PROSITE:PS50097
SMART:SM00225 EMBL:CH471081 GO:GO:0007155 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 InterPro:IPR008979
SUPFAM:SSF49785 InterPro:IPR011705 Pfam:PF07707 SMART:SM00875
CTD:114781 eggNOG:NOG237096 HOGENOM:HOG000007577 HOVERGEN:HBG050744
KO:K10481 EMBL:AB067467 EMBL:AL031905 EMBL:AL033518 EMBL:AL079341
EMBL:AL355345 EMBL:AL451162 EMBL:BC101354 EMBL:BC101355
EMBL:BC101357 EMBL:AK057507 IPI:IPI00396190 IPI:IPI00654713
RefSeq:NP_001092742.1 RefSeq:NP_001165889.1 RefSeq:NP_443125.1
RefSeq:NP_689946.2 UniGene:Hs.603858 ProteinModelPortal:Q96Q07
SMR:Q96Q07 IntAct:Q96Q07 STRING:Q96Q07 PhosphoSite:Q96Q07
DMDM:34395545 PaxDb:Q96Q07 PRIDE:Q96Q07 Ensembl:ENST00000314100
Ensembl:ENST00000403056 Ensembl:ENST00000408958
Ensembl:ENST00000419706 Ensembl:ENST00000481247 GeneID:114781
KEGG:hsa:114781 UCSC:uc003ony.4 GeneCards:GC06M038136
H-InvDB:HIX0005845 HGNC:HGNC:21228 HPA:HPA041930 MIM:611185
MIM:611237 neXtProt:NX_Q96Q07 PharmGKB:PA134891920
InParanoid:Q96Q07 OMA:CRYIRIV PhylomeDB:Q96Q07 ChiTaRS:BTBD9
GenomeRNAi:114781 NextBio:79155 ArrayExpress:Q96Q07 Bgee:Q96Q07
CleanEx:HS_BTBD9 Genevestigator:Q96Q07 GermOnline:ENSG00000183826
Uniprot:Q96Q07
Length = 612
Score = 250 (93.1 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 49/81 (60%), Positives = 63/81 (77%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+T +T L E+G+I+P NVAT A V+EGVSRS ++L++G+T YDWDSGYTCHQL
Sbjct: 408 MFTNKTFTL-EKGLIVPMENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQL 466
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI+VQL QPYM+ + R L
Sbjct: 467 GSGAIVVQLAQPYMIGSIRLL 487
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 4 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGS- 62
++ + L+ G++IP+ N+AT + A+VV+G +S +L+DG+T YD D G++ H +
Sbjct: 260 SRDMDLNYRGMLIPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDD 317
Query: 63 --GAILVQLGQPYMLDTERAL 81
I ++LGQP +++ R L
Sbjct: 318 CRSGIEIKLGQPSIINHIRIL 338
>UNIPROTKB|Q5ZK96 [details] [associations]
symbol:BTBD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0007155 "cell adhesion" evidence=IEA]
InterPro:IPR000210 InterPro:IPR000421 InterPro:IPR013069
Pfam:PF00651 Pfam:PF00754 PROSITE:PS50097 SMART:SM00225
GO:GO:0007155 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
InterPro:IPR008979 SUPFAM:SSF49785 GeneTree:ENSGT00550000074511
InterPro:IPR011705 Pfam:PF07707 SMART:SM00875 CTD:114781
eggNOG:NOG237096 HOGENOM:HOG000007577 HOVERGEN:HBG050744 KO:K10481
EMBL:AADN02011917 EMBL:AADN02011918 EMBL:AADN02011919 EMBL:AJ720188
IPI:IPI00587351 RefSeq:NP_001008459.1 UniGene:Gga.22658
Ensembl:ENSGALT00000016477 GeneID:421429 KEGG:gga:421429
NextBio:20824199 Uniprot:Q5ZK96
Length = 647
Score = 250 (93.1 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 49/81 (60%), Positives = 63/81 (77%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+T +T L E+G+I+P NVAT A V+EGVSRS ++L++G+T YDWDSGYTCHQL
Sbjct: 444 MFTNKTFAL-EKGLIVPTENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQL 502
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI+VQL QPYM+ + R L
Sbjct: 503 GSGAIVVQLAQPYMIGSIRLL 523
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 4 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGS- 62
++ + L+ G++IP N+AT + A+VV+G +S +L+DG+T YD D G++ H +
Sbjct: 296 SRDMDLNYRGMLIPGENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDD 353
Query: 63 --GAILVQLGQPYMLDTERAL 81
I ++LGQP +++ R L
Sbjct: 354 CRSGIEIKLGQPSIINHIRIL 374
>UNIPROTKB|E1C497 [details] [associations]
symbol:BTBD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0007155 "cell adhesion" evidence=IEA]
InterPro:IPR000210 InterPro:IPR000421 InterPro:IPR013069
Pfam:PF00651 Pfam:PF00754 PROSITE:PS50097 SMART:SM00225
GO:GO:0007155 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
InterPro:IPR008979 SUPFAM:SSF49785 GeneTree:ENSGT00550000074511
InterPro:IPR011705 Pfam:PF07707 SMART:SM00875 OMA:CRYIRIV
EMBL:AADN02011917 EMBL:AADN02011918 EMBL:AADN02011919
IPI:IPI00819964 Ensembl:ENSGALT00000038190 Uniprot:E1C497
Length = 650
Score = 250 (93.1 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 49/81 (60%), Positives = 63/81 (77%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+T +T L E+G+I+P NVAT A V+EGVSRS ++L++G+T YDWDSGYTCHQL
Sbjct: 447 MFTNKTFAL-EKGLIVPTENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQL 505
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI+VQL QPYM+ + R L
Sbjct: 506 GSGAIVVQLAQPYMIGSIRLL 526
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 4 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGS- 62
++ + L+ G++IP N+AT + A+VV+G +S +L+DG+T YD D G++ H +
Sbjct: 296 SRDMDLNYRGMLIPGENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDD 353
Query: 63 --GAILVQLGQPYMLDTERAL 81
I ++LGQP +++ R L
Sbjct: 354 CRSGIEIKLGQPSIINHIRIL 374
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 242 (90.2 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 61/194 (31%), Positives = 107/194 (55%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
NVF+K+L +++ + + FS +G +LS KV D +GNS GYGFV F + + + +IE++
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 172 NGMLLNSKIVFVGKFIPRKER-EKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+G +K K + R L K N++IK D D++L+++FEP+G I
Sbjct: 170 DGYQYQNK-----KLLCRLSNLYTNLNSKYPS-NNLFIKPLPYDVTDDQLRKLFEPFGKI 223
Query: 231 TSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVD---GKILYVGRAQKKAERTQ 286
+VM +++G+S+ GFV + S A KA+ A NG ++ G L V A + ++
Sbjct: 224 IECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKIS 283
Query: 287 ELKRRFEMLKIERL 300
+R+ + + E++
Sbjct: 284 RKQRKMQTIYQEKI 297
Score = 183 (69.5 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 52/144 (36%), Positives = 78/144 (54%)
Query: 194 KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYES 252
KEL E + TNV++K+ +FNDE L+ +F YG + S +VM + G S G+GFV + S
Sbjct: 100 KEL-ELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSS 158
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKN 312
P+ + A++ E+DG Y + Q K +L R L ++Y NL++K
Sbjct: 159 PQESAAAIE-----ELDG---Y--QYQNK-----KLLCRLSNLYTNLNSKYPSNNLFIKP 203
Query: 313 LDDSIDDERLRKEFTPFGTITSAK 336
L + D++LRK F PFG I K
Sbjct: 204 LPYDVTDDQLRKLFEPFGKIIECK 227
Score = 129 (50.5 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 36/113 (31%), Positives = 64/113 (56%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHF-ETEEAANKSIE 169
N+F+ +L +D+ ++ FS FG + S +V D+ G +KGYGFV F +T+EA K +
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEAL-KCQK 828
Query: 170 KVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKE 222
++NG + SK + V + + EKE K ++ +N ++ N++ L+E
Sbjct: 829 EMNGFRIGSKFLKV-----KLKNEKESMNSGK--SHHQHQNQNKNQNEQHLEE 874
Score = 51 (23.0 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NL+V +L +DD L + F+ FG + S +
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVR 799
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 237 (88.5 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 90 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 145
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 146 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 205
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 206 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 265
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 266 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 300
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 125 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 183
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 184 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 236
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 237 DDDIKSVFEAFGKIKS 252
Score = 126 (49.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 155 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 209
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 210 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 269
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 270 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 301
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 45/88 (51%), Positives = 60/88 (68%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN 264
N+YIKN + +DEKL++ F P+G+ITS +VM DG+S+GFGFV + SPE A KAV N
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 81
Query: 265 GKEVDGKILYVGRAQKKAERTQELKRRF 292
G+ V K LYV AQ+K ER L ++
Sbjct: 82 GRIVGSKPLYVALAQRKEERKAHLTNQY 109
Score = 217 (81.4 bits), Expect = 9.2e-18, P = 9.2e-18
Identities = 40/50 (80%), Positives = 48/50 (96%)
Query: 287 ELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
ELKR+FE LK ER++RYQGVNLY+KNLDD+IDDE+LRKEF+PFG+ITSAK
Sbjct: 2 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 51
Score = 180 (68.4 bits), Expect = 8.6e-13, P = 8.6e-13
Identities = 41/89 (46%), Positives = 57/89 (64%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAAN 165
R GV N++IKNLD +ID++ + FS FGSI S KV E G SKG+GFV F + E A
Sbjct: 17 RYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEAT 74
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREK 194
K++ ++NG ++ SK ++V RKE K
Sbjct: 75 KAVTEMNGRIVGSKPLYVA-LAQRKEERK 102
>UNIPROTKB|A4IFG2 [details] [associations]
symbol:BTBD9 "BTB/POZ domain-containing protein 9"
species:9913 "Bos taurus" [GO:0007155 "cell adhesion" evidence=IEA]
InterPro:IPR000210 InterPro:IPR000421 InterPro:IPR013069
Pfam:PF00651 Pfam:PF00754 PROSITE:PS50097 SMART:SM00225
GO:GO:0007155 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
InterPro:IPR008979 SUPFAM:SSF49785 InterPro:IPR011705 Pfam:PF07707
SMART:SM00875 EMBL:BC134567 IPI:IPI00686832 RefSeq:NP_001121970.1
UniGene:Bt.46996 ProteinModelPortal:A4IFG2 GeneID:505504
KEGG:bta:505504 CTD:114781 eggNOG:NOG237096 HOGENOM:HOG000007577
HOVERGEN:HBG050744 InParanoid:A4IFG2 KO:K10481 OrthoDB:EOG4STS47
NextBio:20867169 Uniprot:A4IFG2
Length = 611
Score = 244 (91.0 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 48/81 (59%), Positives = 62/81 (76%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+T +T L E+G+I+P NVAT A V+EGVSRS ++L++G+T YDWDS YTCHQL
Sbjct: 408 MFTNKTFTL-EKGLIVPMENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSSYTCHQL 466
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI+VQL QPYM+ + R L
Sbjct: 467 GSGAIVVQLAQPYMIGSIRLL 487
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 4 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGS- 62
++ + L+ G++IP+ N+AT + A+VV+G +S +L+DG+T YD D G++ H +
Sbjct: 260 SRDMDLNYRGMLIPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDD 317
Query: 63 --GAILVQLGQPYMLDTERAL 81
I ++LGQP +++ R L
Sbjct: 318 CRSGIEIKLGQPSIINHIRIL 338
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 237 (88.5 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 49 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 104
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 105 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 164
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 165 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 224
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 225 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 142
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 143 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 195
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 196 DDDIKSVFEAFGKIKS 211
Score = 126 (49.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 114 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 168
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 169 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 228
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 229 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 260
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 239 (89.2 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 60/228 (26%), Positives = 121/228 (53%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NLD ++ + F+ GS+ KV D G++ Y FV F A+++++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQALQTMN 105
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
LL + + V + +++ ++ + + F +V++ + + +++KL+E F+P+G ++
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKI-DTTRHF-HVFVGDLSSEVDNQKLREAFQPFGDVSD 163
Query: 233 YRVMN--NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
+V+ N KS+G+GFV+Y E AE+A++ NG+ + + + A +K ++
Sbjct: 164 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSH 223
Query: 291 RFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
E E N+ G N +YV N+ +DE +R+ F FG IT +
Sbjct: 224 YNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVR 270
Score = 226 (84.6 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 62/214 (28%), Positives = 113/214 (52%)
Query: 79 RALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-----NVFIKNLDKSIDNKAMYDTFSA 133
+AL TMN L R +++ W+ +P ++S + +VF+ +L +DN+ + + F
Sbjct: 99 QALQTMNKRLLLDREMKVNWAV-EPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP 157
Query: 134 FGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK-- 190
FG + KV +D SKGYGFV + E A ++IE++NG L + + + RK
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTN-WATRKPG 216
Query: 191 EREK--ELGEKA--KLF-------TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND 239
++EK EK+ +++ T+VY+ N DE +++ F +G IT R+
Sbjct: 217 DQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIF--- 272
Query: 240 GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL 273
K +G+ FV +++ + A KA+ N ++V G+++
Sbjct: 273 -KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLV 305
>RGD|1306975 [details] [associations]
symbol:Btbd9 "BTB (POZ) domain containing 9" species:10116
"Rattus norvegicus" [GO:0007155 "cell adhesion" evidence=IEA]
[GO:0007616 "long-term memory" evidence=ISO] [GO:0008344 "adult
locomotory behavior" evidence=ISO] [GO:0042428 "serotonin metabolic
process" evidence=ISO] [GO:0042748 "circadian sleep/wake cycle,
non-REM sleep" evidence=ISO] [GO:0048512 "circadian behavior"
evidence=ISO] [GO:0050951 "sensory perception of temperature
stimulus" evidence=ISO] [GO:0060586 "multicellular organismal iron
ion homeostasis" evidence=ISO] [GO:1900242 "regulation of synaptic
vesicle endocytosis" evidence=ISO] InterPro:IPR000210
InterPro:IPR000421 InterPro:IPR013069 Pfam:PF00651 Pfam:PF00754
PROSITE:PS50097 SMART:SM00225 RGD:1306975 GO:GO:0007155
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
InterPro:IPR008979 SUPFAM:SSF49785 InterPro:IPR011705 Pfam:PF07707
SMART:SM00875 CTD:114781 eggNOG:NOG237096 HOGENOM:HOG000007577
HOVERGEN:HBG050744 KO:K10481 OrthoDB:EOG4STS47 EMBL:BC087068
IPI:IPI00188282 RefSeq:NP_001013091.1 UniGene:Rn.48897
ProteinModelPortal:Q5PQR3 GeneID:294318 KEGG:rno:294318
NextBio:637970 ArrayExpress:Q5PQR3 Genevestigator:Q5PQR3
Uniprot:Q5PQR3
Length = 612
Score = 241 (89.9 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+T + L E+G+I P NVAT A V+EGVSRS ++L++G+T YDWDSGYTCHQL
Sbjct: 408 MFTNKAFTL-EKGLIAPMENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQL 466
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI+VQL QPYM+ + R L
Sbjct: 467 GSGAIVVQLAQPYMIGSIRLL 487
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 4 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGS- 62
++ + L+ G++IP+ N+AT + A+VV+G +S +L+DG+T YD D G++ H +
Sbjct: 260 SRDMDLNYRGMLIPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDD 317
Query: 63 --GAILVQLGQPYMLDTERAL 81
I ++LGQP +++ R L
Sbjct: 318 CRSGIEIKLGQPSIINHIRLL 338
>MGI|MGI:1916625 [details] [associations]
symbol:Btbd9 "BTB (POZ) domain containing 9" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007155 "cell
adhesion" evidence=IEA] [GO:0007616 "long-term memory"
evidence=IMP] [GO:0008344 "adult locomotory behavior" evidence=IMP]
[GO:0042428 "serotonin metabolic process" evidence=IMP] [GO:0042748
"circadian sleep/wake cycle, non-REM sleep" evidence=IMP]
[GO:0048512 "circadian behavior" evidence=IMP] [GO:0050951 "sensory
perception of temperature stimulus" evidence=IMP] [GO:0060586
"multicellular organismal iron ion homeostasis" evidence=IMP]
[GO:1900242 "regulation of synaptic vesicle endocytosis"
evidence=IMP] InterPro:IPR000210 InterPro:IPR000421
InterPro:IPR013069 Pfam:PF00651 Pfam:PF00754 PROSITE:PS50097
SMART:SM00225 MGI:MGI:1916625 GO:GO:0008344 GO:GO:0007155
GO:GO:0007616 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0042428
GeneTree:ENSGT00550000074511 InterPro:IPR011705 Pfam:PF07707
SMART:SM00875 CTD:114781 eggNOG:NOG237096 HOGENOM:HOG000007577
HOVERGEN:HBG050744 KO:K10481 OrthoDB:EOG4STS47 OMA:CRYIRIV
EMBL:AK052664 EMBL:BC057897 IPI:IPI00226419 RefSeq:NP_081336.1
RefSeq:NP_766206.1 UniGene:Mm.41220 ProteinModelPortal:Q8C726
SMR:Q8C726 PhosphoSite:Q8C726 PRIDE:Q8C726
Ensembl:ENSMUST00000079924 Ensembl:ENSMUST00000168787 GeneID:224671
KEGG:mmu:224671 UCSC:uc008btt.2 InParanoid:Q8C726 NextBio:377296
Bgee:Q8C726 CleanEx:MM_BTBD9 Genevestigator:Q8C726
GermOnline:ENSMUSG00000062202 GO:GO:0042748 GO:GO:0060586
GO:GO:1900242 GO:GO:0050951 Uniprot:Q8C726
Length = 612
Score = 240 (89.5 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 47/81 (58%), Positives = 62/81 (76%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+T + L E+G+I+P NVAT A V+EGVSRS ++L++G+T YDWDSGYTCHQL
Sbjct: 408 MFTNKAFTL-EKGLIVPLENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQL 466
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSGAI+VQL QPY++ + R L
Sbjct: 467 GSGAIVVQLAQPYIIGSIRLL 487
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 4 AQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQLGS- 62
++ + L+ G++IP+ N+AT + A+VV+G +S +L+DG+T YD D G++ H +
Sbjct: 260 SRDMDLNYRGMLIPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDD 317
Query: 63 --GAILVQLGQPYMLDTERAL 81
I ++LGQP +++ R L
Sbjct: 318 CRSGIEIKLGQPSIINHIRLL 338
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 237 (88.5 bits), Expect = 4.8e-18, P = 4.8e-18
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 55 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 110
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 111 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 170
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 171 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 230
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 231 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 265
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 90 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 148
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 149 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 201
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 202 DDDIKSVFEAFGKIKS 217
Score = 126 (49.4 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 120 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 174
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 175 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 234
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 235 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 266
Score = 42 (19.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 479 FVEFSMASETHKAIQALNGRWFAGR 503
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 237 (88.5 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 63 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 118
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 119 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 178
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 179 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 238
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 239 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 129 (50.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 98 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 156
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 157 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 209
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 210 DDDIKSVFEAFGKIKS 225
Score = 126 (49.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 128 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 182
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 183 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 242
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 243 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 274
Score = 41 (19.5 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 487 FVEFSVASETHKAIQALNGRWFAGR 511
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 237 (88.5 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 63 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 118
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 119 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 178
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 179 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 238
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 239 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 129 (50.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 98 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 156
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 157 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 209
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 210 DDDIKSVFEAFGKIKS 225
Score = 126 (49.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 128 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 182
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 183 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 242
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 243 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 274
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 237 (88.5 bits), Expect = 5.6e-18, P = 5.6e-18
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 92 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 147
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 148 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 207
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 208 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 267
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 268 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 129 (50.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 127 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 185
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 186 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 238
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 239 DDDIKSVFEAFGKIKS 254
Score = 126 (49.4 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 157 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 211
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 212 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 271
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 272 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 303
Score = 41 (19.5 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 516 FVEFSIASETHKAIQALNGRWFAGR 540
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 237 (88.5 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 97 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 152
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 153 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 212
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 213 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 272
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 273 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 132 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 190
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 191 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 243
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 244 DDDIKSVFEAFGKIKS 259
Score = 126 (49.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 162 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 216
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 217 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 276
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 277 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
Score = 43 (20.2 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGR 545
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 237 (88.5 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 60/215 (27%), Positives = 116/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L P++ M +QR +L + + V++ ++ + +
Sbjct: 97 QQQLTNLQMAAVTMGFGDPLS--PLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 152
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP 188
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 153 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 212
Query: 189 RKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +
Sbjct: 213 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHK 272
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 273 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 132 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 190
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 191 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 243
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 244 DDDIKSVFEAFGKIKS 259
Score = 126 (49.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 162 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 216
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 217 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 276
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 277 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
Score = 43 (20.2 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGR 545
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 207 (77.9 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 50/165 (30%), Positives = 87/165 (52%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + + FS+ G I S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF P+
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRTMTQKDVEDMFSPF 129
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 161 (61.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 62/255 (24%), Positives = 118/255 (46%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDK-VAGHSLGYGFVNYVTAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ +++ + K N++I L +++ K + D FS F
Sbjct: 73 -DAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSPF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L+ + + FG + + + F P G ++ +N G S G+
Sbjct: 189 QNKNVALLSQLYHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 115 (45.5 bits), Expect = 0.00044, P = 0.00044
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+FI NL + D ++ F FG++ + KV +D N KG+GFV E A+ +I +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 172 NGMLLNSKIVFV 183
NG L KI+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 110 (43.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+L+ +F G I S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 58 (25.5 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 214 QAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 336 K 336
K
Sbjct: 274 K 274
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 216 (81.1 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 48/175 (27%), Positives = 91/175 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSI-LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+F+ NL +D++A+ F G++ +S + + S+G+GFV T E A K++EK
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N +N + + V + PR R + +Y+ N D + +L+ +F +G +
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 232 SYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284
RV+++ G+SRGFGFV + A+ A +G+ ++G+ + V A+++ R
Sbjct: 235 DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 164 (62.8 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 48/141 (34%), Positives = 71/141 (50%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NND-GKSRGFGFVAYESPEF 255
E+AKLF + N D + + L +FE GT+ V+ N D +SRGFGFV + E
Sbjct: 111 EEAKLF----VGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 256 AEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDD 315
AEKAV+ +N EV+G+ L V RA + R + R ++ +YV NL
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDA----------AFRIYVGNLPW 216
Query: 316 SIDDERLRKEFTPFGTITSAK 336
+D RL + F+ G + A+
Sbjct: 217 DVDSGRLERLFSEHGKVVDAR 237
Score = 54 (24.1 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 85 NFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQ 144
NF +L RP+ + S + +LR S F+ + + D GSI V
Sbjct: 41 NF-SLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGED-----GSIGGTSVTV 94
Query: 145 DEQGNSK-GYGFVHFETEEA 163
DE S+ G GF EEA
Sbjct: 95 DESFESEDGVGFPE-PPEEA 113
>FB|FBgn0030228 [details] [associations]
symbol:BTBD9 "BTB (POZ) domain containing 9 ortholog"
species:7227 "Drosophila melanogaster" [GO:0045938 "positive
regulation of circadian sleep/wake cycle, sleep" evidence=IMP]
[GO:0008344 "adult locomotory behavior" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000210 InterPro:IPR013069
Pfam:PF00651 PROSITE:PS50097 SMART:SM00225 GO:GO:0005737
EMBL:AE014298 GO:GO:0008344 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0045938 InterPro:IPR008979 SUPFAM:SSF49785
GeneTree:ENSGT00550000074511 InterPro:IPR011705 Pfam:PF07707
SMART:SM00875 eggNOG:NOG237096 KO:K10481 EMBL:AY069308
RefSeq:NP_572649.1 UniGene:Dm.7344 SMR:Q9W2S3
EnsemblMetazoa:FBtr0071497 GeneID:32000 KEGG:dme:Dmel_CG1826
UCSC:CG1826-RA FlyBase:FBgn0030228 InParanoid:Q9W2S3 OMA:YLYFEAR
OrthoDB:EOG4NCJV0 ChiTaRS:CG1826 GenomeRNAi:32000 NextBio:776299
Uniprot:Q9W2S3
Length = 722
Score = 236 (88.1 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 47/81 (58%), Positives = 62/81 (76%)
Query: 1 MYTAQTVQLSEEGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQL 60
M+TA+ +L + PK NVAT E+SA V +GVSR+ ++LI+G+ V+YDWDSGYTCHQL
Sbjct: 414 MHTAKVPRLVNH-FVAPKTNVATVEMSAIVTDGVSRTRNALINGDYVRYDWDSGYTCHQL 472
Query: 61 GSGAILVQLGQPYMLDTERAL 81
GSG I+V+LGQPY L + R L
Sbjct: 473 GSGEIVVRLGQPYYLGSMRLL 493
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 232 (86.7 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 58/194 (29%), Positives = 104/194 (53%)
Query: 100 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHF 158
Q+ + ++ N+ I L + + ++ +Y+ FS G I +CK+ +D + G S GYGFV +
Sbjct: 82 QQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDY 141
Query: 159 ETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDE 218
+TE + +I+K+NG + +K + V P + K+ TN+Y+ N + ND+
Sbjct: 142 KTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKD--------TNLYVINLSRNINDD 193
Query: 219 KLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG--KILY 274
L +F PYG I ++ + G+ RG FV Y E A++A++A N +G + ++
Sbjct: 194 MLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIW 253
Query: 275 VGRAQK--KAERTQ 286
V A++ KA+ Q
Sbjct: 254 VRLAEEHGKAKAAQ 267
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 211 (79.3 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAAN 165
R+ +F++NL N+ + + FS +G+++ KVA+D +G SKG+GF++FET EAA
Sbjct: 68 RQEQPNGIFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYFETPEAAQ 127
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKE---REKELGEKAKLFTNVYIKNFGEDFNDEKLKE 222
K+ E+ N + + + V I + R+ E+ +++YI N + D L
Sbjct: 128 KACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERTPTSSLYIGNIPYESTDAALNN 187
Query: 223 MFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+F+ + R+ + G RGF ++ E A KAV+ E+ G+ L V +
Sbjct: 188 LFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLMELMGRTLRVDYSTP 247
Query: 281 KAERTQELK 289
+ R + ++
Sbjct: 248 RVPRNERMQ 256
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 230 (86.0 bits), Expect = 5.6e-17, P = 5.6e-17
Identities = 58/214 (27%), Positives = 114/214 (53%)
Query: 71 QPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDT 130
Q + + + A TM F P++ M +QR +L + + V++ ++ + +
Sbjct: 93 QQQLTNLQMAAVTMGFGKPL-LPLQSMAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQA 149
Query: 131 FSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 150 FAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 209
Query: 190 KEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRG 244
+ + +L E+A+ F +Y+ + +D +D+ +K +FE +G I S + + GK +G
Sbjct: 210 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 269
Query: 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 270 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 39/155 (25%), Positives = 71/155 (45%)
Query: 184 GK-FIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG-- 240
GK +P + + + VY+ + + ++ +++ F P+G I S M+ D
Sbjct: 109 GKPLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVT 167
Query: 241 -KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIER 299
K +GF FV YE PE A+ A++ N + G+ + VGR + + + E +
Sbjct: 168 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARA 225
Query: 300 LNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
NR +YV ++ + D+ ++ F FG I S
Sbjct: 226 FNR-----IYVASVHQDLSDDDIKSVFEAFGKIKS 255
Score = 126 (49.4 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 158 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 212
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 213 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 272
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 273 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 304
Score = 41 (19.5 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 517 FVEFSIASETHKAIQALNGRWFAGR 541
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 210 (79.0 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 23 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 80
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 81 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 140
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 141 GERHGSAAE 149
Score = 142 (55.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 40/137 (29%), Positives = 72/137 (52%)
Query: 148 GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVY 207
G +GYGFV F +EE A+ +I+ +N + L K + V K K L A N++
Sbjct: 8 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIF 60
Query: 208 IKNFGEDFNDEKLKEMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWN 264
I N + +++ L + F +G I ++M + G S+G+ F+ + S + ++ A++A N
Sbjct: 61 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 120
Query: 265 GKEVDGKILYVGRAQKK 281
G+ + + + V A KK
Sbjct: 121 GQYLCNRPITVSYAFKK 137
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 228 (85.3 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 60/215 (27%), Positives = 115/215 (53%)
Query: 71 QPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 129
Q + + + A TM F D L ++ + +QR +L + + V++ ++ + +
Sbjct: 49 QQQLTNLQMAAVTMGFGDPLSS--LQSVAAQRQRAL--AIMCRVYVGSIYYELGEDTIRQ 104
Query: 130 TFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK--F 186
F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + VG+
Sbjct: 105 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGS 164
Query: 187 IPRKERE-KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSR 243
I + + ++L E+A+ + +Y+ + D +D+ +K +FE +G I S + GK +
Sbjct: 165 IGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHK 224
Query: 244 GFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
GFGF+ YE P+ + AV + N ++ G+ L VG+A
Sbjct: 225 GFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 38/136 (27%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 142
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + Q + E L E Y +YV ++ +
Sbjct: 143 ALEQMNSVMLGGRNIKVGRPGSIGQ-AQPI---IEQLA-EEARAYN--RIYVASIHPDLS 195
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 196 DDDIKSVFEAFGKIKS 211
Score = 117 (46.2 bits), Expect = 0.00056, P = 0.00056
Identities = 36/152 (23%), Positives = 69/152 (45%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 114 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPGSIGQA 168
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + F AFG I SC +A++ G KG+GF
Sbjct: 169 QPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGF 228
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 229 IEYEKPQSSLDAVSSMNLFDLGGQYLRVGKAV 260
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 227 (85.0 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 62/220 (28%), Positives = 116/220 (52%)
Query: 66 LVQLGQPYMLDTERALDTMNF-DALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 124
L L P L + A TM F D L P++ + +QR +L + + V++ ++ +
Sbjct: 53 LTNLQMPNSL--QMASLTMGFGDPLS--PLQSVAAQRQRAL--AIMCRVYVGSIYYELGE 106
Query: 125 KAMYDTFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183
+ F+ FG I S ++ D KG+ FV +E EAA ++E++N ++L + + V
Sbjct: 107 DTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 166
Query: 184 GKFIPRKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND- 239
G+ + + +L E+A+ F +Y+ + D +D+ +K +FE +G I S + +
Sbjct: 167 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPT 226
Query: 240 -GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
GK +G+GF+ Y+ + A+ AV + N ++ G+ L VG+A
Sbjct: 227 TGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKA 266
Score = 128 (50.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 91 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTLKHKGFAFVEYEVPEAAQL 149
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 150 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHPDLS 202
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 203 DDDIKSVFEAFGRIKS 218
Score = 124 (48.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 38/152 (25%), Positives = 69/152 (45%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 121 SIDMSWDSVTLKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 175
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + F AFG I SC +A+D G KGYGF
Sbjct: 176 QPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGF 235
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ ++ ++A ++ +N L + + VGK +
Sbjct: 236 IEYDKAQSAQDAVSSMNLFDLGGQYLRVGKAV 267
Score = 38 (18.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + + KA+QA N + G+
Sbjct: 495 FVEFSAASEMNKAIQALNNRWFGGR 519
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 219 (82.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 48/172 (27%), Positives = 95/172 (55%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKV 171
V++ ++ + + F+ FG I S ++ D KG+ FV +E EAA ++E++
Sbjct: 113 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 172
Query: 172 NGMLLNSKIVFVGKFIPRKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
N ++L + + VG+ + + +L E+A+ F +Y+ + +D +D+ +K +FE +G
Sbjct: 173 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 232
Query: 229 TITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
I S + + GK +G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 233 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 284
Score = 130 (50.8 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 40/178 (22%), Positives = 81/178 (45%)
Query: 161 EEAANKSIEK-VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEK 219
++A ++E+ + +L+ I + + + + + VY+ + + ++
Sbjct: 67 QKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDT 126
Query: 220 LKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276
+++ F P+G I S M+ D K +GF FV YE PE A+ A++ N + G+ + VG
Sbjct: 127 IRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 185
Query: 277 RAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
R + + + E + NR +YV ++ + D+ ++ F FG I S
Sbjct: 186 RPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLSDDDIKSVFEAFGKIKS 236
Score = 126 (49.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 139 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 193
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 194 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 253
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 254 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 285
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 225 (84.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 58/187 (31%), Positives = 93/187 (49%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEK 170
+VF+ +L K + N+ + TF+ FG + KV +D Q SKGYGFV F ++ A +I
Sbjct: 226 HVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAG 285
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKA--KLF-------TNVYIKNFGEDFNDEKLK 221
+NG + + V + RK E+ + ++F T+VY+ N + D L+
Sbjct: 286 MNGKWIGKRAVRTN-WAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 344
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
++F YG I R+ K++ + FV YE E A KA+ NGKE+ G + + +
Sbjct: 345 DLFSTYGDIAEVRIF----KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRTQ 400
Query: 282 AERTQEL 288
A Q L
Sbjct: 401 AVPNQAL 407
Score = 150 (57.9 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 36/141 (25%), Positives = 71/141 (50%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEF 255
+ +K F +V++ + +D ++E LK F +G ++ +V+ + KS+G+GFV++ + +
Sbjct: 220 DTSKHF-HVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQN 278
Query: 256 AEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDD 315
AE A+ NGK + + + A +K K FE ++ + ++YV N+
Sbjct: 279 AENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFE--QVFNSTKADNTSVYVGNISQ 336
Query: 316 SIDDERLRKEFTPFGTITSAK 336
D LR F+ +G I +
Sbjct: 337 QTTDADLRDLFSTYGDIAEVR 357
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 207 (77.9 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 57/203 (28%), Positives = 105/203 (51%)
Query: 77 TERALDTMNFDALKGRPIRIMWS--QRDPSLRKSGVG----NVFIKNLDKSIDNKAMYDT 130
T AL T N + + P++ ++ QR S +G N+ I L + + + +
Sbjct: 2 TMEALLTPNNNNVPTSPVQTTYTSTQRYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSL 61
Query: 131 FSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPR 189
F++ G I SCK+ +D+ G S GYGFV++ EE A +++ NG+ L +K + V P
Sbjct: 62 FTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPS 121
Query: 190 KEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGF 247
++ K G +N+Y+ + +L+ +F P+G I + R+++++ G S+G GF
Sbjct: 122 NDQIK--G------SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGF 173
Query: 248 VAYESPEFAEKAVQAWNGKEVDG 270
V ++ + A+ A++ NG G
Sbjct: 174 VRFDKKDEADVAIKTLNGSIPSG 196
Score = 122 (48.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 28/101 (27%), Positives = 56/101 (55%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D RA+ + N L+ + I++ +++ PS + N+++ + KS+ + F FG
Sbjct: 95 DALRAVSSFNGLRLQNKTIKVSYAR--PSNDQIKGSNLYVSGIPKSMTLHELESIFRPFG 152
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGML 175
I++ ++ D G SKG GFV F+ ++ A+ +I+ +NG +
Sbjct: 153 QIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 102 (41.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 195 ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYES 252
++GE TN+ I + E+++ +F G I S +++ + G+S G+GFV Y
Sbjct: 36 DIGESK---TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVR 92
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQ 279
E A +AV ++NG + K + V A+
Sbjct: 93 EEDALRAVSSFNGLRLQNKTIKVSYAR 119
Score = 84 (34.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWN 264
+++ N D +D L ++F +G I + +++ + + +G+ FV+ + A A+ + N
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 265 GKEVDGKILYV 275
G + GK L V
Sbjct: 436 GTNLAGKTLQV 446
Score = 56 (24.8 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
G L+V NL DD L + F+ FG I + K
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVK 404
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 187 (70.9 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 47/162 (29%), Positives = 83/162 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ A ++I
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L SK + V P + K+ N+YI + + ++EMF YG I
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSIKD--------ANLYISGLPKTMTQKDVEEMFGRYGRI 146
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ RV+ + G SRG F+ ++ AE A++ NG++ G
Sbjct: 147 INSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPG 188
Score = 143 (55.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 47/167 (28%), Positives = 83/167 (49%)
Query: 9 LSEEGIIIPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILV 67
+++E +I K N+ L + + RSL SS+ + + K D H LG G V
Sbjct: 25 MADE-LIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYG--FV 80
Query: 68 QLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAM 127
P D ERA+ T+N L+ + I++ +++ PS N++I L K++ K +
Sbjct: 81 NYLNPN--DAERAISTLNGLRLQSKTIKVSYAR--PSSDSIKDANLYISGLPKTMTQKDV 136
Query: 128 YDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
+ F +G I++ +V D+ G S+G F+ F+ A +I+ +NG
Sbjct: 137 EEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 126 (49.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV E A A+ +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 111 (44.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ + ++L+ +F G + S +++ + G S G+GFV Y +P AE+A+
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQE 287
NG + K + V A+ ++ ++
Sbjct: 94 TLNGLRLQSKTIKVSYARPSSDSIKD 119
Score = 60 (26.2 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 228 QAQRFRFSPMSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 287
Query: 336 K 336
K
Sbjct: 288 K 288
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 197 (74.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + + FS+ G + S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF +
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRTMTQKDVEDMFSRF 129
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 62/255 (24%), Positives = 117/255 (45%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA+ T+N L+ + I++ +++ + K N++I L +++ K + D FS F
Sbjct: 73 -DAERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L+ + + FG + + + F P G ++ +N G S G+
Sbjct: 189 QNKNMALLSQLYHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+FI NL + D ++ F FG++ + KV +D N KG+GFV E A +I +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 172 NGMLLNSKIVFV 183
NG L KI+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 109 (43.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 58 (25.5 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 214 QAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 336 K 336
K
Sbjct: 274 K 274
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 197 (74.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + + FS+ G + S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF +
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRTMTQKDVEDMFSRF 129
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 62/255 (24%), Positives = 117/255 (45%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA+ T+N L+ + I++ +++ + K N++I L +++ K + D FS F
Sbjct: 73 -DAERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L+ + + FG + + + F P G ++ +N G S G+
Sbjct: 189 QNKNMALLSQLYHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+FI NL + D ++ F FG++ + KV +D N KG+GFV E A +I +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 172 NGMLLNSKIVFV 183
NG L KI+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 109 (43.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 58 (25.5 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 214 QAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 336 K 336
K
Sbjct: 274 K 274
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 197 (74.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + + +++MF +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRNMTQKDVEDMFSRF 129
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 163 (62.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 62/255 (24%), Positives = 118/255 (46%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ +++ + K N++I L +++ K + D FS F
Sbjct: 73 -DAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRNMTQKDVEDMFSRF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L+ + + FG + + + F P G ++ +N G S G+
Sbjct: 189 QNKNVALLSQLYHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+FI NL + D ++ F FG++ + KV +D N KG+GFV E A +I +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 172 NGMLLNSKIVFV 183
NG L KI+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 106 (42.4 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 58 (25.5 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 214 QAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 336 K 336
K
Sbjct: 274 K 274
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 196 (74.1 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF P+
Sbjct: 78 INTLNGLRLQSKTIKVSVARPSSESIKD--------ANLYISGLPRTMTQKDVEDMFLPF 129
Query: 228 GTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ + G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 GRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 174
Score = 148 (57.2 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 63/255 (24%), Positives = 114/255 (44%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYLNAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ S PS N++I L +++ K + D F F
Sbjct: 73 -DAERAINTLNGLRLQSKTIKV--SVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMN-NDGKSRGFGFV 248
+ K + ++L + + FG + + + F P G ++S +N S G+
Sbjct: 189 QNKNMALLSQLCHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSSISGVNVASSASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKEVDGKILYV 275
NG + K L V
Sbjct: 306 NGYRLGDKTLQV 317
Score = 105 (42.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQE 287
NG + K + V A+ +E ++
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKD 105
Score = 59 (25.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 214 QAQRFRFSPMGVDHMSSISGVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 336 K 336
K
Sbjct: 274 K 274
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 197 (74.4 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIE 169
N+ + L +++ + + F + G I SCK+ +D+ +G S GYGFV++ + A K+I
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 170 KVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 230 ITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
I + R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 179 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPG 221
Score = 133 (51.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 178 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 116 (45.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN---DGKSRGFGFVAYESPEFAEKAV 260
TN+ + ++ E+LK +F G I S +++ + +G+S G+GFV Y P+ AEKA+
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 261 QAWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 126 NTLNGLRLQTKTIKVSYAR 144
Score = 112 (44.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 62 (26.9 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 288 LKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+K RF + I+ + G+N ++V NL D+ L + F PFG +T+ K
Sbjct: 278 IKSRFSPMAIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 336
Score = 48 (22.0 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 183
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 196 (74.1 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 48/181 (26%), Positives = 94/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Query: 287 E 287
+
Sbjct: 212 Q 212
Score = 133 (51.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 115 (45.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 112 (44.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 61 (26.5 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 288 LKRRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+K RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 249 VKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 307
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 195 (73.7 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRTMTQKDVEDMFSRF 129
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 163 (62.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 62/255 (24%), Positives = 118/255 (46%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ +++ + K N++I L +++ K + D FS F
Sbjct: 73 -DAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L+ + + FG + + + F P G ++ +N G S G+
Sbjct: 189 QNKNVALLSQLYHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+FI NL + D ++ F FG++ + KV +D N KG+GFV E A +I +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 172 NGMLLNSKIVFV 183
NG L KI+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 106 (42.4 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 58 (25.5 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 214 QAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 336 K 336
K
Sbjct: 274 K 274
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 198 (74.8 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 45/159 (28%), Positives = 85/159 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +S+ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 128 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 180 ITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 134 (52.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 178 RIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 115 (45.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + + E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 112 (44.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 60 (26.2 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 288 LKRRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+K RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 277 VKSRFPPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 335
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 196 (74.1 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 48/181 (26%), Positives = 94/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Query: 287 E 287
+
Sbjct: 212 Q 212
Score = 133 (51.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 115 (45.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 112 (44.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 59 (25.8 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 286 QELKR-RFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITS 334
Q+ +R RF + I+ + G+N+ +V NL D+ L + F PFG +T+
Sbjct: 232 QQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTN 291
Query: 335 AK 336
K
Sbjct: 292 VK 293
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 219 (82.2 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 48/172 (27%), Positives = 95/172 (55%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKV 171
V++ ++ + + F+ FG I S ++ D KG+ FV +E EAA ++E++
Sbjct: 23 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 82
Query: 172 NGMLLNSKIVFVGKFIPRKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
N ++L + + VG+ + + +L E+A+ F +Y+ + +D +D+ +K +FE +G
Sbjct: 83 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 142
Query: 229 TITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
I S + + GK +G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 143 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 194
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 202 LFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEK 258
+ VY+ + + ++ +++ F P+G I S M+ D K +GF FV YE PE A+
Sbjct: 19 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQL 77
Query: 259 AVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSID 318
A++ N + G+ + VGR + + + E + NR +YV ++ +
Sbjct: 78 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLS 130
Query: 319 DERLRKEFTPFGTITS 334
D+ ++ F FG I S
Sbjct: 131 DDDIKSVFEAFGKIKS 146
Score = 126 (49.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 49 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 103
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 104 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 163
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 164 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 195
Score = 41 (19.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 363 FVEFSVASETHKAIQALNGRWFAGR 387
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 195 (73.7 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF +
Sbjct: 86 INTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRTMTQKDVEDMFSRF 137
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 138 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 182
Score = 163 (62.4 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 62/255 (24%), Positives = 118/255 (46%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 25 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAK--- 80
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ +++ + K N++I L +++ K + D FS F
Sbjct: 81 -DAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 137
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 138 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV-KFAANPN 196
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L+ + + FG + + + F P G ++ +N G S G+
Sbjct: 197 QNKNVALLSQLYHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIF 255
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 256 IYNLGQDADEGI-LW 269
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 106 (42.4 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 87
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 88 TLNGLRLQSKTIKVSYARPSSE 109
Score = 58 (25.5 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 222 QAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 281
Query: 336 K 336
K
Sbjct: 282 K 282
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 219 (82.2 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 64/235 (27%), Positives = 121/235 (51%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGS--ILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIE 169
+++ +L +D + F++ I+S KV +++ G+S+GYGFV FE+ + A+K ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 170 KVNGMLL-NSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMF-EPY 227
+ NG + N+ F + EK L E ++++ + D +D L E F E Y
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT 285
++ + +V+ N G+S+G+GFV + KA+ NG + + + +G A + +T
Sbjct: 224 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR--KT 281
Query: 286 QELKRRFEMLKIERLNRYQG--VN--LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+++ + R +G +N ++V LD S+ DE L++ F+ FG I S K
Sbjct: 282 NGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVK 336
Score = 189 (71.6 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 57/198 (28%), Positives = 99/198 (50%)
Query: 92 RPIRIMW---SQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSA-FGSILSCKVAQDE 146
+P R+ W S + L +G ++F+ +L + + +++TFS + S+ + KV D
Sbjct: 176 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDA 235
Query: 147 Q-GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER--EKELG------ 197
G SKGYGFV F E K++ ++NG+ +S+ + +G PRK +++ G
Sbjct: 236 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGA 295
Query: 198 ----EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESP 253
E + T +++ DE LK+ F +G I S ++ GK G GFV + +
Sbjct: 296 FTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV--GK--GCGFVQFVNR 351
Query: 254 EFAEKAVQAWNGKEVDGK 271
AE+A++ NG + GK
Sbjct: 352 PNAEEALEKLNGTVI-GK 368
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 196 (74.1 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 48/181 (26%), Positives = 94/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 129 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 180
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 181 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 240
Query: 287 E 287
+
Sbjct: 241 Q 241
Score = 133 (51.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 178
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 179 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 115 (45.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 114 (45.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 264 NGKEVDGKILYVGRAQK 280
NG + ++L V + K
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
Score = 61 (26.5 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 288 LKRRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+K RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 278 VKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 336
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 214 (80.4 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 51/189 (26%), Positives = 97/189 (51%)
Query: 99 SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVH 157
S+R S +F+ NL ++++A+ F G++ +V + E S+G+GFV
Sbjct: 138 SERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 197
Query: 158 FETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFND 217
+ + A ++EK N LN +++ V K PR R + + VY+ N D ++
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 218 EKLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
+L+++F +G + RV+ G+SRGFGFV + +A+ A +G+ ++G+ + V
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 276 GRAQKKAER 284
A+++ R
Sbjct: 318 NVAEERPPR 326
Score = 163 (62.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/144 (31%), Positives = 72/144 (50%)
Query: 195 ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYES 252
E E+AKLF + N D N + L +FE GT+ V+ N +SRGFGFV S
Sbjct: 145 EPSEEAKLF----VGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKN 312
+ AE AV+ +N +++G++L V +A + R + R +E +YV N
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYE----------PAFRVYVGN 250
Query: 313 LDDSIDDERLRKEFTPFGTITSAK 336
L +D+ RL + F+ G + A+
Sbjct: 251 LPWDVDNGRLEQLFSEHGKVVEAR 274
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 89 LKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQ-DEQ 147
LK P +Q + G G+V ++ + S++++ + + + G V++ DE
Sbjct: 69 LKKSPFVSFVAQTSDWAEEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDES 128
Query: 148 GNSKGYGFVHFETE 161
G V E
Sbjct: 129 EGDVSEGAVSERAE 142
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 196 (74.1 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 48/181 (26%), Positives = 94/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Query: 287 E 287
+
Sbjct: 212 Q 212
Score = 133 (51.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 115 (45.5 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 112 (44.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 58 (25.5 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 250 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 306
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 193 (73.0 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRSMTQKDVEDMFSRF 129
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ +NG + G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPG 174
Score = 161 (61.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 63/255 (24%), Positives = 117/255 (45%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ +++ + K N++I L +S+ K + D FS F
Sbjct: 73 -DAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRSMTQKDVEDMFSRF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L + + FG + + + F P G ++ +N G S G+
Sbjct: 189 QNKNVALLSQLCHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+FI NL + D ++ F FG++ + KV +D N KG+GFV E A +I +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 172 NGMLLNSKIVFV 183
NG L KI+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 106 (42.4 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 58 (25.5 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 214 QAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 336 K 336
K
Sbjct: 274 K 274
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 195 (73.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ T + A ++
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF +
Sbjct: 105 INTLNGLRLQSKTIKVSYARPSSEVIKD--------ANLYISGLPRTMTQKDVEDMFSRF 156
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 157 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 201
Score = 163 (62.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 62/255 (24%), Positives = 118/255 (46%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 44 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAK--- 99
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ +++ + K N++I L +++ K + D FS F
Sbjct: 100 -DAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 156
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 157 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV-KFAANPN 215
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMNNDGK-SRGFGFV 248
+ K + ++L+ + + FG + + + F P G ++ +N G S G+
Sbjct: 216 QNKNVALLSQLYHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIF 274
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 275 IYNLGQDADEGI-LW 288
Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + KIL V K+ +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 106 (42.4 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
NG + K + V A+ +E
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSE 128
Score = 58 (25.5 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 286 QELKRRFEMLKIERLNRYQGVN----------LYVKNLDDSIDDERLRKEFTPFGTITSA 335
Q + RF + ++ ++ GVN +++ NL D+ L + F PFG +T+
Sbjct: 241 QAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 300
Query: 336 K 336
K
Sbjct: 301 K 301
>WB|WBGene00015463 [details] [associations]
symbol:hpo-9 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] InterPro:IPR000210 InterPro:IPR013069
Pfam:PF00651 PROSITE:PS50097 SMART:SM00225 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0045132
GeneTree:ENSGT00550000074511 InterPro:IPR011705 Pfam:PF07707
SMART:SM00875 eggNOG:NOG237096 HOGENOM:HOG000007577 KO:K10481
OMA:CRYIRIV EMBL:FO080353 PIR:T31745 RefSeq:NP_504839.1
ProteinModelPortal:O16313 SMR:O16313 DIP:DIP-26073N IntAct:O16313
MINT:MINT-252068 STRING:O16313 PaxDb:O16313 EnsemblMetazoa:C05C8.6
GeneID:179117 KEGG:cel:CELE_C05C8.6 UCSC:C05C8.6 CTD:179117
WormBase:C05C8.6 InParanoid:O16313 NextBio:903996 Uniprot:O16313
Length = 581
Score = 220 (82.5 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 1 MYTAQTVQLSE-EGIIIPKHNVATRELSAKVVEGVSRSLSSLIDGNTVKYDWDSGYTCHQ 59
M++ +T+ + +I+P N+ T E A+VVEGVSR ++LI+G++ YDWD+GYTCHQ
Sbjct: 422 MFSTETMPVEPVHKVIVPHRNITTIENHARVVEGVSRCRNALINGDSSSYDWDTGYTCHQ 481
Query: 60 LGSGAILVQLGQPYMLDTERAL 81
+GSG I++QL QPY++ + R L
Sbjct: 482 IGSGLIMIQLAQPYIISSMRIL 503
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 213 (80.0 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/128 (36%), Positives = 74/128 (57%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E A +N L G+PIR+ + +D + N+F+ NLD +D + +YDTFSA G
Sbjct: 64 DVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALG 123
Query: 136 SILSC-KVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK---E 191
++ +VA+DE G SKGYGFV +++ E A+ +IE +N L +K + V R+ E
Sbjct: 124 QLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGE 183
Query: 192 REKELGEK 199
R ++ E+
Sbjct: 184 RHGDIAER 191
Score = 160 (61.4 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 44/185 (23%), Positives = 90/185 (48%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+++ NLD+ + + +++ G +++ + +D NS G+GF F E+ + +
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ-- 70
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
+LN +F GK I ++ G + N+++ N ++ L + F G +
Sbjct: 71 ---ILNQVKLF-GKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 232 SYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK---ILYVGRAQKKAERTQ 286
+ D G+S+G+GFV+Y+S E A+ A++A N + + K + Y + + K ER
Sbjct: 127 KAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHG 186
Query: 287 ELKRR 291
++ R
Sbjct: 187 DIAER 191
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 219 (82.2 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 48/172 (27%), Positives = 95/172 (55%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQG-NSKGYGFVHFETEEAANKSIEKV 171
V++ ++ + + F+ FG I S ++ D KG+ FV +E EAA ++E++
Sbjct: 115 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 174
Query: 172 NGMLLNSKIVFVGKFIPRKEREK---ELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
N ++L + + VG+ + + +L E+A+ F +Y+ + +D +D+ +K +FE +G
Sbjct: 175 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 234
Query: 229 TITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
I S + + GK +G+GF+ YE + ++ AV + N ++ G+ L VG+A
Sbjct: 235 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 286
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 40/178 (22%), Positives = 81/178 (45%)
Query: 161 EEAANKSIEK-VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEK 219
++A ++E+ + +L+ I + + + + + VY+ + + ++
Sbjct: 69 QKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDT 128
Query: 220 LKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276
+++ F P+G I S M+ D K +GF FV YE PE A+ A++ N + G+ + VG
Sbjct: 129 IRQAFAPFGPIKSID-MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 187
Query: 277 RAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
R + + + E + NR +YV ++ + D+ ++ F FG I S
Sbjct: 188 RPSNIGQAQPIIDQLAE--EARAFNR-----IYVASVHQDLSDDDIKSVFEAFGKIKS 238
Score = 126 (49.4 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 38/152 (25%), Positives = 70/152 (46%)
Query: 46 TVKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI----MWSQR 101
++ WDS H+ G V+ P + AL+ MN L GR I++ Q
Sbjct: 141 SIDMSWDSVTMKHK---GFAFVEYEVPEA--AQLALEQMNSVMLGGRNIKVGRPSNIGQA 195
Query: 102 DPSLRK-----SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
P + + +++ ++ + + + + F AFG I SC +A+D G KGYGF
Sbjct: 196 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGF 255
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFI 187
+ +E +++ ++ +N L + + VGK +
Sbjct: 256 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 287
Score = 41 (19.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGK 271
FV + KA+QA NG+ G+
Sbjct: 500 FVEFSIASETHKAIQALNGRWFAGR 524
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 196 (74.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 48/181 (26%), Positives = 94/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 128 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 180 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 239
Query: 287 E 287
+
Sbjct: 240 Q 240
Score = 133 (51.9 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 178 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 115 (45.5 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 112 (44.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 58 (25.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 278 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 334
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 196 (74.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 48/181 (26%), Positives = 94/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 129 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 180
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 181 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 240
Query: 287 E 287
+
Sbjct: 241 Q 241
Score = 133 (51.9 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 178
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 179 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 115 (45.5 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 112 (44.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 58 (25.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 279 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 335
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 194 (73.4 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKS 167
G N+ + L +++ + FS+ G + S K+ +D+ G+S GYGFV++ + A ++
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPY 227
I +NG+ L SK + V P E K+ N+YI + +++MF P+
Sbjct: 78 INTLNGLRLQSKTIKVSFARPSSETIKD--------ANLYISGLPRTMTQKDVEDMFLPF 129
Query: 228 GTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
G I + RV+ + G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 GHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 174
Score = 149 (57.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 61/255 (23%), Positives = 116/255 (45%)
Query: 16 IPKHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYM 74
I + N+ L + + RSL SS+ + + K D H LG G + +
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYLNAK--- 72
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 134
D ERA++T+N L+ + I++ +++ PS N++I L +++ K + D F F
Sbjct: 73 -DAERAINTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPF 129
Query: 135 GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKE 191
G I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF
Sbjct: 130 GHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITV-KFAANPN 188
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMN-NDGKSRGFGFV 248
+ K + +++ + + FG + + + F P G ++S +N S G+
Sbjct: 189 QSKNMALLSQICHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSSISSVNVASSASSGWCIF 247
Query: 249 AYESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 248 IYNLGQDADEGI-LW 261
Score = 123 (48.4 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + K L V K+ +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 105 (42.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++L+ +F G + S +++ + G S G+GFV Y + + AE+A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQE 287
NG + K + V A+ +E ++
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSETIKD 105
Score = 54 (24.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+++ NL D+ L + F PFG +T+ K
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVK 274
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 189 (71.6 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 43/160 (26%), Positives = 84/160 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ A+K+I
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + + + ++++F YG I
Sbjct: 99 LNGLKLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMSQKDMEQLFSQYGRI 150
Query: 231 TSYRVMNND---GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 151 ITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQK 190
Score = 134 (52.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 28/100 (28%), Positives = 58/100 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ++A++T+N L+ + I++ +++ PS N+++ L K++ K M FS +G
Sbjct: 91 DADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYG 148
Query: 136 SILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 149 RIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 109 (43.4 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ K +F G I S +++ + G+S G+GFV Y P A+KA+
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG ++ K + V A+
Sbjct: 98 TLNGLKLQTKTIKVSYAR 115
Score = 100 (40.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + ++ L ++F P+G +T+ +V+ + K +GFGFV + + A A+ +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
Score = 63 (27.2 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + GVNL +V NL D+ L + F PFG +T+ K
Sbjct: 250 KRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 306
Score = 45 (20.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + + + F+ +G I +++
Sbjct: 125 NLYVSGLPKTMSQKDMEQLFSQYGRIITSR 154
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 211 (79.3 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 42/58 (72%), Positives = 49/58 (84%)
Query: 279 QKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
QKK E ELK +FE +K +++ RYQGVNLYVKNLDDSID ERLRK+F+PFGTITSAK
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSID-ERLRKQFSPFGTITSAK 57
Score = 185 (70.2 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 41/88 (46%), Positives = 54/88 (61%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN 264
N+Y+KN +D DE+L++ F P+GTITS +VM G S+ FGF+ + S E A KAV N
Sbjct: 29 NLYVKNL-DDSIDERLRKQFSPFGTITSAKVMMEGGHSKRFGFICFSSHEEAFKAVMEMN 87
Query: 265 GKEVDGKILYVGRAQKKAERTQELKRRF 292
GK V K LYV AQ K E L ++
Sbjct: 88 GKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 151 (58.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 36/97 (37%), Positives = 60/97 (61%)
Query: 100 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFE 159
++D R GV N+++KNLD SID + + FS FG+I S KV E G+SK +GF+ F
Sbjct: 18 KQDKITRYQGV-NLYVKNLDDSIDER-LRKQFSPFGTITSAKVMM-EGGHSKRFGFICFS 74
Query: 160 TEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKEL 196
+ E A K++ ++NG ++ +K ++V ++E + L
Sbjct: 75 SHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHL 111
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 204 (76.9 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 58/227 (25%), Positives = 108/227 (47%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K V V ++K+ F +V++ + + E +K F P+G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA---ERTQE 287
RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K + T E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 288 LKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ ++ E +N+ N +Y + + ++ +R+ F+PFG I
Sbjct: 184 SNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 229
Score = 133 (51.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 80 ALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFSAFGS 136
AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+ FG
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 137 ILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
I +V +D G SKGYGFV F + A +I+++ G L +
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 164
Score = 111 (44.1 bits), Expect = 0.00095, P = 0.00095
Identities = 41/172 (23%), Positives = 71/172 (41%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + + F+ FG I +V +D G SKGYGFV F + A +I++
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 171 VNGMLLNSKIVFVGKFI-----PRKERE---KELG------EKAKLFTNVYIKNFGEDFN 216
+ G L + + P+ E K+L + + VY
Sbjct: 156 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 215
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKS---RGFGFVAYESPEFAEKAVQAWNG 265
++ +++ F P+G I RV + G S + + P + + Q NG
Sbjct: 216 EQLMRQTFSPFGQIMEIRVFPDKGYSFVRQTQSSAPWMGPNYGVQPPQGQNG 267
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 193 (73.0 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 44/162 (27%), Positives = 86/162 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F +G I
Sbjct: 129 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQFGRI 180
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 181 ITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPG 222
Score = 139 (54.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 43/158 (27%), Positives = 80/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + +SL S+ + + K D T LG G V +P D
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYMEPK--D 121
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS FG
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQFGR 179
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 180 IITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 116 (45.9 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 112 (44.5 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 59 (25.8 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + G+NL +V NL D+ L + F PFG +T+ K
Sbjct: 279 KRFSPMTIDGVTSLAGINLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVK 335
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 214 (80.4 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 65/235 (27%), Positives = 120/235 (51%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGS--ILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIE 169
+++ +L +D + +F++ I+S KV +++ G S+GYGFV FE+ + A+K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 170 KVNGMLL-NSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMF-EPY 227
+ NG + N+ F + EK L E ++++ + D +D L E F E Y
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 228 GTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT 285
++ + +V+ N G+S+G+GFV + KA+ NG + + + +G A + +T
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR--KT 279
Query: 286 QELKRRFEMLKIERLNRYQG--VN--LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+++ + L R +G +N ++V LD S+ DE L++ F FG I S K
Sbjct: 280 NGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Score = 190 (71.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 57/198 (28%), Positives = 99/198 (50%)
Query: 92 RPIRIMW---SQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSA-FGSILSCKVAQDE 146
+P R+ W S + L +G ++F+ +L + + +++TFS + S+ + KV D
Sbjct: 174 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA 233
Query: 147 Q-GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER--EKELG------ 197
G SKGYGFV F E K++ ++NG+ +S+ + +G PRK +++ G
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGT 293
Query: 198 ----EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESP 253
E + T +++ DE LK+ F +G I S ++ GK G GFV + +
Sbjct: 294 LTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV--GK--GCGFVQFVNR 349
Query: 254 EFAEKAVQAWNGKEVDGK 271
AE+A++ NG + GK
Sbjct: 350 PNAEEALEKLNGTVI-GK 366
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Query: 287 E 287
+
Sbjct: 212 Q 212
Score = 133 (51.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 112 (44.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 109 (43.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 58 (25.5 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 250 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 306
Score = 48 (22.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Query: 287 E 287
+
Sbjct: 212 Q 212
Score = 133 (51.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 112 (44.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 109 (43.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 58 (25.5 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 250 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 306
Score = 48 (22.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 195 (73.7 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 105 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 156
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 157 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 198
Score = 135 (52.6 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 43 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 97
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 98 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 155
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 156 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 110 (43.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHKS 351
Score = 108 (43.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 104 TLNGLRLQTKTIKVSYAR 121
Score = 50 (22.7 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 298
Score = 48 (22.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 160
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 167 (63.8 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 44/152 (28%), Positives = 77/152 (50%)
Query: 190 KEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK-----SRG 244
+E E+E E++ ++IKN D +EKLKE+F GT+ S + K S G
Sbjct: 716 EEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMG 775
Query: 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQ 304
FGFV Y PE A+KA++ G VDG L V +++ + L R+ ++ + + ++
Sbjct: 776 FGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK-- 833
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ V+N+ +R+ F+ FG + + +
Sbjct: 834 ---ILVRNIPFQAHSREIRELFSTFGELKTVR 862
Score = 156 (60.0 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 47/193 (24%), Positives = 102/193 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQ--DEQGN--SKGYGFVHFETEEAANKSI 168
+FIKNL+ + + + FS G++ SC +++ ++ G S G+GFV + E A K++
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 169 EKVNGMLLNS-KI-VFVGKFIPRKE----REKELGEKAKLFTNVYIKNFGEDFNDEKLKE 222
+++ G +++ K+ V + + + R+K++ K + + + ++N + +++E
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRK-QTTSKILVRNIPFQAHSREIRE 850
Query: 223 MFEPYGTITSYRV---MNNDGKSRGFGFVAYESPEFAEKAVQAW-NGKEVDGKILYVGRA 278
+F +G + + R+ M G RGFGFV + + + A++A A + + G+ L + A
Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA 910
Query: 279 QKKAERTQELKRR 291
+ Q L+R+
Sbjct: 911 DSEVT-LQALRRK 922
Score = 132 (51.5 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 32/124 (25%), Positives = 63/124 (50%)
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225
K++ G N+ + G+ + E E++L E +LF ++N +E L+++F
Sbjct: 368 KNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLF----VRNLPYTSTEEDLEKLFS 423
Query: 226 PYGTITS--YRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
YG ++ Y + + K +GF F+ + PE A KA +G+ G++L+V + K E
Sbjct: 424 KYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKE 483
Query: 284 RTQE 287
+++
Sbjct: 484 ASED 487
Score = 99 (39.9 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 18/74 (24%), Positives = 39/74 (52%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169
+ + +KNL + + F+AFG++ C + + G + +GF+ F++EE A K+ +
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQK 60
Query: 170 KVNGMLLNSKIVFV 183
N +++ + V
Sbjct: 61 HFNKSFIDTSRITV 74
Score = 85 (35.0 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 37/154 (24%), Positives = 69/154 (44%)
Query: 189 RKEREKELGEKAKLFTNVYIKNFGEDFN--DEKLKEMFEPYGTITSYRVMNNDGKSRGFG 246
R E EK +K + +K G FN ++ + E P + V N G G+
Sbjct: 278 RAETEKPANQKEPTTCHT-VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYI 336
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ-----KKAER--TQELKRRFEMLKIER 299
FV + + E ++A++ N + + G+ + V R + K A + T+ + R E
Sbjct: 337 FVDFSNEEEVKQALKC-NREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEE 395
Query: 300 LNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTIT 333
+ + L+V+NL + +E L K F+ +G ++
Sbjct: 396 EDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLS 429
Score = 78 (32.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 99 SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVH 157
++ + L +SG +F++NL + + + FS +G + D KG+ F+
Sbjct: 392 NEEEEDLAESG--RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
Query: 158 FETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKE 195
F E A K+ +V+G + +++ V +KE ++
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASED 487
Score = 40 (19.1 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSI 137
+ +KNL + +TF FGS+
Sbjct: 589 ILVKNLPAGTLAAQLQETFGHFGSL 613
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 210 (79.0 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 173 (66.0 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKV 171
V++ LD+ + +++ F G +++ + +D G +GYGFV F +EE A+ +I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
N + L K + V K K L A N++I N + +++ L + F +G I
Sbjct: 75 NMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 232 SY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A KK
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 196 (74.1 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTS 223
Query: 287 E 287
+
Sbjct: 224 Q 224
Score = 135 (52.6 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 104
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 108 (43.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 106 (42.4 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V K ++
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHKS 371
Score = 50 (22.7 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 318
Score = 48 (22.0 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 191 (72.3 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 43/159 (27%), Positives = 84/159 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ F + G I SCK+ +D+ G S GYGFV++ A+K+I
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + + ++++++F YG I
Sbjct: 100 LNGLKLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + +SL S+ D + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK-ITGQSLGYG--FVNYSDPN--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
++A++T+N L+ + I++ +++ PS N+++ L K++ K M FS +G
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 108 (43.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++ K +F G I S +++ + G+S G+GFV Y P A+KA+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG ++ K + V A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 99 (39.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + ++ L ++F P+G +T+ +V+ + K +GFGFV + + A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 56 (24.8 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Score = 47 (21.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + + + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 191 (72.3 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 43/159 (27%), Positives = 84/159 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ F + G I SCK+ +D+ G S GYGFV++ A+K+I
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + + ++++++F YG I
Sbjct: 100 LNGLKLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + +SL S+ D + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK-ITGQSLGYG--FVNYSDPN--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
++A++T+N L+ + I++ +++ PS N+++ L K++ K M FS +G
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 108 (43.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++ K +F G I S +++ + G+S G+GFV Y P A+KA+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG ++ K + V A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 99 (39.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + ++ L ++F P+G +T+ +V+ + K +GFGFV + + A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 56 (24.8 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Score = 47 (21.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + + + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 191 (72.3 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 43/159 (27%), Positives = 84/159 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ F + G I SCK+ +D+ G S GYGFV++ A+K+I
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + + ++++++F YG I
Sbjct: 100 LNGLKLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + +SL S+ D + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK-ITGQSLGYG--FVNYSDPN--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
++A++T+N L+ + I++ +++ PS N+++ L K++ K M FS +G
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 108 (43.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++ K +F G I S +++ + G+S G+GFV Y P A+KA+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG ++ K + V A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 99 (39.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + ++ L ++F P+G +T+ +V+ + K +GFGFV + + A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 56 (24.8 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Score = 47 (21.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + + + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 191 (72.3 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 43/159 (27%), Positives = 84/159 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ F + G I SCK+ +D+ G S GYGFV++ A+K+I
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + + ++++++F YG I
Sbjct: 100 LNGLKLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + +SL S+ D + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK-ITGQSLGYG--FVNYSDPN--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
++A++T+N L+ + I++ +++ PS N+++ L K++ K M FS +G
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 137 ILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 108 (43.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++ K +F G I S +++ + G+S G+GFV Y P A+KA+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG ++ K + V A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 99 (39.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + ++ L ++F P+G +T+ +V+ + K +GFGFV + + A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 56 (24.8 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Score = 47 (21.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + + + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 191 (72.3 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 43/159 (27%), Positives = 84/159 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ F + G I SCK+ +D+ G S GYGFV++ A+K+I
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + + ++++++F YG I
Sbjct: 100 LNGLKLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + +SL S+ D + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK-ITGQSLGYG--FVNYSDPN--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
++A++T+N L+ + I++ +++ PS N+++ L K++ K M FS +G
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 137 ILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 108 (43.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++ K +F G I S +++ + G+S G+GFV Y P A+KA+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG ++ K + V A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 99 (39.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + ++ L ++F P+G +T+ +V+ + K +GFGFV + + A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 56 (24.8 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Score = 47 (21.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + + + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 191 (72.3 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 43/159 (27%), Positives = 84/159 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ F + G I SCK+ +D+ G S GYGFV++ A+K+I
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + + ++++++F YG I
Sbjct: 100 LNGLKLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + +SL S+ D + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK-ITGQSLGYG--FVNYSDPN--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
++A++T+N L+ + I++ +++ PS N+++ L K++ K M FS +G
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 108 (43.1 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ ++ K +F G I S +++ + G+S G+GFV Y P A+KA+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG ++ K + V A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 99 (39.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + ++ L ++F P+G +T+ +V+ + K +GFGFV + + A A+ +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
Score = 56 (24.8 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVK 315
Score = 47 (21.6 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + + + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 210 (79.0 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P ++ V++ LD+ + +++ F G +++ + +D G +GYGFV F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K K L A N++I N + +++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 279 QKK 281
KK
Sbjct: 178 FKK 180
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 210 (79.0 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P ++ V++ LD+ + +++ F G +++ + +D G +GYGFV F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K K L A N++I N + +++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 279 QKK 281
KK
Sbjct: 178 FKK 180
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 210 (79.0 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P ++ V++ LD+ + +++ F G +++ + +D G +GYGFV F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K K L A N++I N + +++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 279 QKK 281
KK
Sbjct: 178 FKK 180
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 210 (79.0 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P ++ V++ LD+ + +++ F G +++ + +D G +GYGFV F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K K L A N++I N + +++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 279 QKK 281
KK
Sbjct: 178 FKK 180
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 210 (79.0 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P ++ V++ LD+ + +++ F G +++ + +D G +GYGFV F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K K L A N++I N + +++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 279 QKK 281
KK
Sbjct: 178 FKK 180
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 210 (79.0 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P ++ V++ LD+ + +++ F G +++ + +D G +GYGFV F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K K L A N++I N + +++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 279 QKK 281
KK
Sbjct: 178 FKK 180
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 210 (79.0 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/129 (37%), Positives = 76/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ MN L G+PIR+ ++ + VG N+FI NLD ID K +YDTFSAF
Sbjct: 66 DADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + GNSKGY F++F + +A++ +IE +NG L ++ + V + +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGSAAE 192
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P ++ V++ LD+ + +++ F G +++ + +D G +GYGFV F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K K L A N++I N + +++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK---ASAHNKNLDVGA----NIFIGNLDPEIDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+G+ F+ + S + ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 279 QKK 281
KK
Sbjct: 178 FKK 180
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 210 (79.0 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 67/258 (25%), Positives = 121/258 (46%)
Query: 100 QRDPS-LRKSGVGN--VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGF 155
Q+ P+ ++ S N ++I +L + +D ++ FS G ++S K+ +++Q G S+ YGF
Sbjct: 70 QQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGF 129
Query: 156 VHFETEEAANKSIEKVNG-MLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGED 214
V F T AA K ++ NG M+ N++ F + EK E F+ +++ + D
Sbjct: 130 VEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKR-AETGSDFS-IFVGDLASD 187
Query: 215 FNDEKLKEMFEP-YGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271
D L++ F Y ++ +V+ N G S+G+GFV + +A+ NG +
Sbjct: 188 VTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSR 247
Query: 272 ILYVGRAQ-KKAERTQELKRRFEMLK--------IERLNRYQG----VNLYVKNLDDSID 318
+ +G A KK ++ + +L ++ G ++V LD +
Sbjct: 248 AMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVT 307
Query: 319 DERLRKEFTPFGTITSAK 336
DE LR+ F FG + S K
Sbjct: 308 DEELRQSFNQFGEVVSVK 325
Score = 145 (56.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 36/141 (25%), Positives = 72/141 (51%)
Query: 78 ERALDTMNFDALKG--RPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTF- 131
E+ L + N + +P R+ W+ +++ G+ +F+ +L + + + DTF
Sbjct: 139 EKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFA 198
Query: 132 SAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
S + S+ KV D G+SKGYGFV F E ++++ ++NG+ +S+ + +G P+K
Sbjct: 199 SRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKK 258
Query: 191 -EREKELGEKAKLFTNVYIKN 210
++ +A + + Y N
Sbjct: 259 PSAHEQYSSQAVILSGGYASN 279
Score = 82 (33.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
T +++ + DE+L++ F +G + S ++ GK G GFV + A++A+Q
Sbjct: 295 TTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPA--GK--GCGFVQFSDRSSAQEAIQKL 350
Query: 264 NGKEVDGK 271
+G + GK
Sbjct: 351 SGAII-GK 357
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 195 (73.7 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 135 (52.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 99
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 110 (43.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366
Score = 108 (43.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 50 (22.7 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 313
Score = 48 (22.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 195 (73.7 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 135 (52.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 99
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 110 (43.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366
Score = 108 (43.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 50 (22.7 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 313
Score = 48 (22.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 191 (72.3 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 44/158 (27%), Positives = 84/158 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGK 266
+ R++ + G SRG GF+ ++ AE+A++ NG+
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 133 (51.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 115 (45.5 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+LK +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 195 (73.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Score = 135 (52.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 104
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 110 (43.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHKS 371
Score = 108 (43.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 50 (22.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 318
Score = 48 (22.0 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 195 (73.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 193
Score = 135 (52.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 110 (43.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHKS 373
Score = 108 (43.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 50 (22.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 320
Score = 48 (22.0 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 195 (73.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 193
Score = 135 (52.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 92
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 110 (43.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHKS 373
Score = 108 (43.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 50 (22.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 320
Score = 48 (22.0 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 196 (74.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 149 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 200
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKI--LYVGRAQKKAERTQ 286
+ R++ + G SRG GF+ ++ AE+A++ NG++ G + V A +++T
Sbjct: 201 ITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTS 260
Query: 287 E 287
+
Sbjct: 261 Q 261
Score = 138 (53.6 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 87 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 141
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 142 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 199
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 200 IITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 108 (43.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 148 TLNGLRLQTKTIKVSYAR 165
Score = 106 (42.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V K ++
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHKS 408
Score = 51 (23.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 290 RRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RF + I+ + G+N+ +V NL D+ L + F PFG + + K
Sbjct: 299 KRFSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVK 355
Score = 48 (22.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 204
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 206 (77.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 58/227 (25%), Positives = 109/227 (48%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G SCK+ D GN Y FV F A ++ +N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K + V ++K+ F +V++ + + + + ++ F P+G I+
Sbjct: 70 GRKILGKDMKVNWASTPSSQKKDTSNH---F-HVFVGDLSPEISTDDVRAAFAPFGKISD 125
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK--AERTQEL 288
RV+ + GKS+G+GF+++ + AE A+Q NG+ + G+ + A +K A ++
Sbjct: 126 ARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNE 185
Query: 289 KRRFEMLKIER-LNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ L E LN+ N +Y + + D+ +R+ F+PFG I
Sbjct: 186 GASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQI 232
Score = 157 (60.3 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 50/195 (25%), Positives = 86/195 (44%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + F+ FG I +V +D G SKGYGF+ F + A +I++
Sbjct: 98 HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQ 157
Query: 171 VNGMLLNSKIVFVG-----KFIPRKERE----KELGEKAKLFTN------VYIKNFGEDF 215
+NG L + + P+ E K L + L + VY
Sbjct: 158 MNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGL 217
Query: 216 NDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL-- 273
+D+ +++ F P+G I RV +G+ FV ++S E A A+ + NG ++G +
Sbjct: 218 SDQLMRQTFSPFGQIMEIRVF----PEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKC 273
Query: 274 YVGRAQKKAERTQEL 288
Y G+ Q++
Sbjct: 274 YWGKETADMRSMQQM 288
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 207 (77.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 45/122 (36%), Positives = 76/122 (62%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D + A+ +N L G+PIR+ + +D G N+FI NLD +D K +YDTFSAFG
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFG 136
Query: 136 SILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
I S K+ +D + GNS+G+GF+ +++ EA++ +IE + G L+++ + V + +K+ +
Sbjct: 137 VIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVS-YAYKKDTK 195
Query: 194 KE 195
E
Sbjct: 196 GE 197
Score = 198 (74.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 51/182 (28%), Positives = 97/182 (53%)
Query: 104 SLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEE 162
S ++ V++ LD + + +++ F G +++ V +D N + YGF+ + +EE
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 163 AANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKE 222
A+ +I+ +N + L+ K + V K + +K L A LF I N D +++ L +
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNK---ASQDKKSLDVGANLF----IGNLDPDVDEKLLYD 130
Query: 223 MFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279
F +G I S ++M + G SRGFGF++Y+S E ++ A+++ G+ + + + V A
Sbjct: 131 TFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAY 190
Query: 280 KK 281
KK
Sbjct: 191 KK 192
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 195 (73.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 135 (52.6 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 99
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 110 (43.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380
Score = 108 (43.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 50 (22.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 327
Score = 48 (22.0 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 195 (73.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 135 (52.6 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 99
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 110 (43.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380
Score = 108 (43.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 50 (22.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 327
Score = 48 (22.0 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 195 (73.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 123 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 174
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 175 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 216
Score = 135 (52.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 61 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 115
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 116 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 173
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 174 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 110 (43.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHKS 382
Score = 108 (43.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 122 TLNGLRLQTKTIKVSYAR 139
Score = 50 (22.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 329
Score = 48 (22.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 178
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 195 (73.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 111 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 162
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 163 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 204
Score = 135 (52.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 49 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 103
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 104 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 161
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 162 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 110 (43.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHKS 384
Score = 108 (43.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 110 TLNGLRLQTKTIKVSYAR 127
Score = 50 (22.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 331
Score = 48 (22.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 166
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 195 (73.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Score = 135 (52.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 104
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 110 (43.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHKS 385
Score = 108 (43.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 50 (22.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 332
Score = 48 (22.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 195 (73.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D+ G S GYGFV++ + A K+I
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V P ++ N+Y+ + ++L+++F YG I
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRD--------ANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 231 TSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ R++ + G SRG GF+ ++ AE+A++ NG++ G
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Score = 135 (52.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 18 KHNVATRELSAKVVEGVSRSL-SSLIDGNTVKYDWDSGYTCHQLGSGAILVQLGQPYMLD 76
K N+ L + + RSL S+ + + K D T LG G V P D
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYG--FVNYIDPK--D 104
Query: 77 TERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGS 136
E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 137 ILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 110 (43.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L ++F P+G + + +V+ N K +GFGFV + + A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V KA ++
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHKS 385
Score = 108 (43.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ + G+S G+GFV Y P+ AEKA+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 50 (22.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG + + K
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVK 332
Score = 48 (22.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV L ++ + L + F+ +G I +++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 198 (74.8 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 57/227 (25%), Positives = 108/227 (47%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K V V ++K+ F +V++ + + E +K F P+G I+
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEITTEDIKAAFAPFGRISD 119
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA---ERTQE 287
RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K + T E
Sbjct: 120 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 179
Query: 288 LKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ ++ E +++ N +Y + + ++ +R+ F+PFG I
Sbjct: 180 SNTK-QLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQI 225
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 80 ALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFSAFGS 136
AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+ FG
Sbjct: 58 ALAAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 116
Query: 137 ILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
I +V +D G SKGYGFV F + A +I+++ G L +
Sbjct: 117 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 160
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 208 (78.3 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 48/175 (27%), Positives = 91/175 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKG--YGFVHFETEEAANKSIEK 170
+++ LD + + F G ++S K+ D+ NSKG YGFV F+ AA ++++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG ++ + V KE + + F ++++ + + NDE L + F +G++
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKE--DTSNHF-HIFVGDLSNEVNDEVLLQAFSAFGSV 208
Query: 231 TSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
+ RVM G+SRG+GFVA+ AEKA+ + +G+ + + + A +K +
Sbjct: 209 SEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQ 263
Score = 158 (60.7 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 33/108 (30%), Positives = 58/108 (53%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFSAF 134
ERA+ T+N + IR+ W+ + + K N +F+ +L ++++ + FSAF
Sbjct: 146 ERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAF 205
Query: 135 GSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV 181
GS+ +V D + G S+GYGFV F A K++ ++G L S+ +
Sbjct: 206 GSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 32/134 (23%), Positives = 68/134 (50%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVM---NNDGKSRGFGFVAYESPEFAEKAVQA 262
+Y+ ++ LK++FE G + S +++ N + K +GFV ++ P AE+A+Q
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERL 322
NG+ + + V A + +E + N + +++V +L + ++DE L
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKE----------DTSNHF---HIFVGDLSNEVNDEVL 198
Query: 323 RKEFTPFGTITSAK 336
+ F+ FG+++ A+
Sbjct: 199 LQAFSAFGSVSEAR 212
Score = 70 (29.7 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
T Y+ N + +F+ +G + R M D RGF F+ ++ E A A+
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETR-MQAD---RGFAFIKMDTHENAASAICQL 363
Query: 264 NGKEVDGKIL 273
NG V+G+ L
Sbjct: 364 NGYNVNGRPL 373
>UNIPROTKB|F1MYI2 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GeneTree:ENSGT00410000025635 PANTHER:PTHR23003:SF6
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00903735
Ensembl:ENSBTAT00000028022 ArrayExpress:F1MYI2 Uniprot:F1MYI2
Length = 549
Score = 136 (52.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 34/108 (31%), Positives = 61/108 (56%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP-------SLRKSG-VGN-VFIKNLDKSIDNKAMY 128
++A + +N +L GRP+++ + DP +++K+G +G+ VF+ NLD + K +
Sbjct: 2 KKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLK 58
Query: 129 DTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL 176
+ FS G ++ + +D+ G S+G G V FE A ++I NG LL
Sbjct: 59 EVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 106
Score = 122 (48.0 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKA 259
A+ ++++N DF + LK+ F G + + +GKS+G G V +ESPE AE+A
Sbjct: 468 ARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERA 527
Query: 260 VQAWNGKEVDGKILYVGRAQKKA 282
+ NG ++ G+ + V R + A
Sbjct: 528 CRMMNGMKLSGREIDV-RIDRNA 549
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 124 (48.7 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 104 SLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEE 162
S + GN+FI L + + + FSAFG I SC+V D G S+G+GFV F+
Sbjct: 92 SSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVA 151
Query: 163 AANKSIEKVNGMLLNSKIVFV 183
+A +I +NG + +K + V
Sbjct: 152 SAQYAINSMNGAKVENKTLLV 172
Score = 120 (47.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQA 262
N++I + + L+ +F +G I S RVM N G SRGFGFV ++ A+ A+ +
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 263 WNGKEVDGKILYV 275
NG +V+ K L V
Sbjct: 160 MNGAKVENKTLLV 172
Score = 110 (43.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS--RGFGFVAYESPEFAEKAVQ 261
TN+Y+ N D +D L +F P G I S +++ + RG+GFV S + A+
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441
Query: 262 AWNGKEVDGKILYV 275
+ NG +V GK + V
Sbjct: 442 SINGVQVGGKTISV 455
Score = 108 (43.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHF-ETEEAANKSIE 169
NVFI+ L D + + FSA+G ++ K+ D N S+G G V + +T+ A N +++
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAIN-AVK 278
Query: 170 KVNGMLLNS--KIVFVGKFIPRKEREKELGEK 199
+NG +L K + V +F ++ +K+ +K
Sbjct: 279 SLNGFILQDPEKPLIV-RFADNEDEKKQKRQK 309
Score = 100 (40.3 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 28/110 (25%), Positives = 57/110 (51%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEF 255
++ K+ NV+I+ +F+ +L E+F YG + +++ + SRG G V Y +
Sbjct: 213 DEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQS 272
Query: 256 AEKAVQAWNGKEVDG--KILYVGRAQKKAERTQELKRRFEMLKIERLNRY 303
A AV++ NG + K L V A + E+ Q+ +++ + ++ + R+
Sbjct: 273 AINAVKSLNGFILQDPEKPLIVRFADNEDEKKQK-RQKLQQKQVRQNMRF 321
Score = 69 (29.3 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
NLYV NL DD L + F+P G I S K
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVK 412
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 206 (77.6 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 63/204 (30%), Positives = 103/204 (50%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIE 169
G +FI L+ + ++ D F FG +L C V +D G S+G+GF+ F+ + N+ +
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS 222
Query: 170 KVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229
K + L+ KI+ + IPR+E+EK AK+F + D +E+ + F +G
Sbjct: 223 KEHH--LDGKIIDPKRAIPREEQEKT----AKMF----VGGVPGDCTEEEFRNFFNQFGR 272
Query: 230 ITSYRVM-NND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
+ +M + D G+ RGFGFV YE+ E A +A + + GK + V RA KA ++
Sbjct: 273 VLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEVKRATPKAS-LRD 330
Query: 288 LKRRFEMLKIERLNRY--QGVNLY 309
R + N Y Q +N+Y
Sbjct: 331 SHDRHQHGYHGNANPYYAQNMNMY 354
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 196 (74.1 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 47/162 (29%), Positives = 85/162 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F +FG + SCK+ +D+ G S GYGFV++ +E A K+I
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+NG+ L +K + V I R E G N+Y+ ++ L+ +F PYG I
Sbjct: 171 LNGLRLQNKTIKVS--IARPSSESIKG------ANLYVSGLPKNMTQSDLESLFSPYGKI 222
Query: 231 TSYRVMNND-------GKSRGFGFVAYESPEFAEKAVQAWNG 265
+ R++ ++ G S+G GF+ ++ A++A++ NG
Sbjct: 223 ITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
+F+ NL + ++ F FG++ S KV +D Q N KG+GFV E A +I+ +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 172 NGMLLNSKIVFVGKFIPRKERE 193
NG L ++++ V F K ++
Sbjct: 423 NGYTLGNRVLQVS-FKTNKNKQ 443
Score = 116 (45.9 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 27/104 (25%), Positives = 56/104 (53%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++ +N L+ + I++ ++ PS N+++ L K++ + FS +G
Sbjct: 163 DAEKAINALNGLRLQNKTIKVSIAR--PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 220
Query: 136 SILSCKVAQDE------QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D G SKG GF+ F+ A+++I+++NG
Sbjct: 221 KIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 116 (45.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
TN+ + + + ++++ +F +G + S +++ + G+S G+GFV Y E AEKA+
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 169
Query: 262 AWNGKEVDGKILYVGRAQKKAE 283
A NG + K + V A+ +E
Sbjct: 170 ALNGLRLQNKTIKVSIARPSSE 191
Score = 112 (44.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D + L ++F P+G + S +V+ + K +GFGFV + E A A+Q+
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V K ++T
Sbjct: 423 NGYTLGNRVLQVSFKTNKNKQT 444
Score = 47 (21.6 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL ++ L + F PFG + S K
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVK 391
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 46/165 (27%), Positives = 84/165 (50%)
Query: 114 FIKNLDKSIDNKAMYDTFSA-FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
FI N+ + +++ D G + ++ D +G S+G V F+ EE+ K+ E +N
Sbjct: 87 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 146
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKA-KLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
L+ + + V K P E + +KA +L + V++ N +KLKE+F G +
Sbjct: 147 KHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 205
Query: 232 SYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
++ + DGKSRG G V +E A +A+ +NG+ + + ++V
Sbjct: 206 RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 250
Score = 136 (52.9 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 34/108 (31%), Positives = 61/108 (56%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP-------SLRKSG-VGN-VFIKNLDKSIDNKAMY 128
++A + +N +L GRP+++ + DP +++K+G +G+ VF+ NLD + K +
Sbjct: 139 KKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLK 195
Query: 129 DTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL 176
+ FS G ++ + +D+ G S+G G V FE A ++I NG LL
Sbjct: 196 EVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 243
Score = 122 (48.0 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKA 259
A+ ++++N DF + LK+ F G + + +GKS+G G V +ESPE AE+A
Sbjct: 623 ARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERA 682
Query: 260 VQAWNGKEVDGKILYVGRAQKKA 282
+ NG ++ G+ + V R + A
Sbjct: 683 CRMMNGMKLSGREIDV-RIDRNA 704
>UNIPROTKB|E2RMR3 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AAEX03012475 Ensembl:ENSCAFT00000029410 Uniprot:E2RMR3
Length = 743
Score = 153 (58.9 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 45/165 (27%), Positives = 83/165 (50%)
Query: 114 FIKNLDKSIDNKAMYDTFSA-FGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
FI N+ + +++ D G + ++ D +G S+ V F+ EE+ K+ E +N
Sbjct: 126 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRVSVVVEFKMEESMKKAAEVLN 185
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKA-KLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
L+ + + V K P E + +KA +L + V++ N +KLKE+F G +
Sbjct: 186 KHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 244
Query: 232 SYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
++ + DGKSRG G V +E A +A+ +NG+ + + ++V
Sbjct: 245 RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 289
Score = 136 (52.9 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 34/108 (31%), Positives = 61/108 (56%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP-------SLRKSG-VGN-VFIKNLDKSIDNKAMY 128
++A + +N +L GRP+++ + DP +++K+G +G+ VF+ NLD + K +
Sbjct: 178 KKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLK 234
Query: 129 DTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLL 176
+ FS G ++ + +D+ G S+G G V FE A ++I NG LL
Sbjct: 235 EVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 282
Score = 122 (48.0 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 200 AKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKA 259
A+ ++++N DF + LK+ F G + + +GKS+G G V +ESPE AE+A
Sbjct: 662 ARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERA 721
Query: 260 VQAWNGKEVDGKILYVGRAQKKA 282
+ NG ++ G+ + V R + A
Sbjct: 722 CRMMNGMKLSGREIDV-RIDRNA 743
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 207 (77.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 61/264 (23%), Positives = 133/264 (50%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKS----GVGNVFIKNLDKSIDNKAMYDTF 131
D ++AL +N L G I++ ++ SL+++ +F+KNL + M + F
Sbjct: 331 DMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF 389
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+ L ++ +++G+SKG ++ F+TE A K++E+ G ++ + + + + +
Sbjct: 390 E---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQ 446
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAY 250
+E + G + + + N ++E L+E+F+ TS ++ NN G+ +G+ FV +
Sbjct: 447 QESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEF 503
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
+ E A++A+ + N E++G+ + + E + ++ M N+ Q L+V
Sbjct: 504 PTAEDAKEALNSCNNTEIEGRAI-------RLEFSSPSWQKGNMNARGGFNQ-QSKTLFV 555
Query: 311 KNLDDSIDDERLRKEFTPFGTITS 334
+ L + +E LR+ F G+I++
Sbjct: 556 RGLSEDTTEETLRESFE--GSISA 577
Score = 205 (77.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 60/217 (27%), Positives = 105/217 (48%)
Query: 76 DTERALDTMNFDALKGRPIRIMWS-QRDPSLRKSGVGN-----VFIKNLDKSIDNKAMYD 129
+ E+AL+ + GR + I ++ ++ + G G + + NL + + + +
Sbjct: 418 EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQE 477
Query: 130 TFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP- 188
F SI K+ Q+ QG KGY FV F T E A +++ N + + + + P
Sbjct: 478 LFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPS 534
Query: 189 -RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFG 246
+K G + ++++ ED +E L+E FE G+I++ V + D G S+GFG
Sbjct: 535 WQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFG 592
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
FV + SPE A+ A +A E+DG + + A+ K E
Sbjct: 593 FVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 629
Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 44/176 (25%), Positives = 94/176 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
++F+KNL + D + + F + +V++ G+SK +G+V F + E +K+++ +
Sbjct: 280 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 338
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
NG L + + K KE KE +K + +++KN ++++K +FE +
Sbjct: 339 NGKKLMGLEIKLEK-AKSKESLKE-NKKERDARTLFVKNLPYRVTEDEMKNVFE--NALE 394
Query: 232 SYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
V+N +G S+G ++ +++ AEKA++ G EVDG+ + + +K+++ +
Sbjct: 395 VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 450
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 207 (77.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 61/264 (23%), Positives = 133/264 (50%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKS----GVGNVFIKNLDKSIDNKAMYDTF 131
D ++AL +N L G I++ ++ SL+++ +F+KNL + M + F
Sbjct: 333 DMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF 391
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+ L ++ +++G+SKG ++ F+TE A K++E+ G ++ + + + + +
Sbjct: 392 E---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQ 448
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAY 250
+E + G + + + N ++E L+E+F+ TS ++ NN G+ +G+ FV +
Sbjct: 449 QESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEF 505
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
+ E A++A+ + N E++G+ + + E + ++ M N+ Q L+V
Sbjct: 506 PTAEDAKEALNSCNNTEIEGRAI-------RLEFSSPSWQKGNMNARGGFNQ-QSKTLFV 557
Query: 311 KNLDDSIDDERLRKEFTPFGTITS 334
+ L + +E LR+ F G+I++
Sbjct: 558 RGLSEDTTEETLRESFE--GSISA 579
Score = 205 (77.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 60/217 (27%), Positives = 105/217 (48%)
Query: 76 DTERALDTMNFDALKGRPIRIMWS-QRDPSLRKSGVGN-----VFIKNLDKSIDNKAMYD 129
+ E+AL+ + GR + I ++ ++ + G G + + NL + + + +
Sbjct: 420 EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQE 479
Query: 130 TFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP- 188
F SI K+ Q+ QG KGY FV F T E A +++ N + + + + P
Sbjct: 480 LFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPS 536
Query: 189 -RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFG 246
+K G + ++++ ED +E L+E FE G+I++ V + D G S+GFG
Sbjct: 537 WQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFG 594
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
FV + SPE A+ A +A E+DG + + A+ K E
Sbjct: 595 FVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 44/176 (25%), Positives = 94/176 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
++F+KNL + D + + F + +V++ G+SK +G+V F + E +K+++ +
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 340
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
NG L + + K KE KE +K + +++KN ++++K +FE +
Sbjct: 341 NGKKLMGLEIKLEK-AKSKESLKE-NKKERDARTLFVKNLPYRVTEDEMKNVFE--NALE 396
Query: 232 SYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
V+N +G S+G ++ +++ AEKA++ G EVDG+ + + +K+++ +
Sbjct: 397 VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 207 (77.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 61/264 (23%), Positives = 133/264 (50%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKS----GVGNVFIKNLDKSIDNKAMYDTF 131
D ++AL +N L G I++ ++ SL+++ +F+KNL + M + F
Sbjct: 333 DMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF 391
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+ L ++ +++G+SKG ++ F+TE A K++E+ G ++ + + + + +
Sbjct: 392 E---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQ 448
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAY 250
+E + G + + + N ++E L+E+F+ TS ++ NN G+ +G+ FV +
Sbjct: 449 QESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEF 505
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
+ E A++A+ + N E++G+ + + E + ++ M N+ Q L+V
Sbjct: 506 PTAEDAKEALNSCNNTEIEGRAI-------RLEFSSPSWQKGNMNARGGFNQ-QSKTLFV 557
Query: 311 KNLDDSIDDERLRKEFTPFGTITS 334
+ L + +E LR+ F G+I++
Sbjct: 558 RGLSEDTTEETLRESFE--GSISA 579
Score = 205 (77.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 60/217 (27%), Positives = 105/217 (48%)
Query: 76 DTERALDTMNFDALKGRPIRIMWS-QRDPSLRKSGVGN-----VFIKNLDKSIDNKAMYD 129
+ E+AL+ + GR + I ++ ++ + G G + + NL + + + +
Sbjct: 420 EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQE 479
Query: 130 TFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP- 188
F SI K+ Q+ QG KGY FV F T E A +++ N + + + + P
Sbjct: 480 LFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPS 536
Query: 189 -RKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGFG 246
+K G + ++++ ED +E L+E FE G+I++ V + D G S+GFG
Sbjct: 537 WQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFG 594
Query: 247 FVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
FV + SPE A+ A +A E+DG + + A+ K E
Sbjct: 595 FVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 44/176 (25%), Positives = 94/176 (53%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
++F+KNL + D + + F + +V++ G+SK +G+V F + E +K+++ +
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 340
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
NG L + + K KE KE +K + +++KN ++++K +FE +
Sbjct: 341 NGKKLMGLEIKLEK-AKSKESLKE-NKKERDARTLFVKNLPYRVTEDEMKNVFE--NALE 396
Query: 232 SYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
V+N +G S+G ++ +++ AEKA++ G EVDG+ + + +K+++ +
Sbjct: 397 VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 202 (76.2 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 58/234 (24%), Positives = 109/234 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-------NVYIKNFGEDFNDEKLKEMFE 225
G + K V V ++K+ + T +V++ + + E +K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 226 PYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA- 282
P+G I+ RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 283 --ERTQELKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ T E + ++ E +N+ N +Y + + ++ +R+ F+PFG I
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 47/183 (25%), Positives = 83/183 (45%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + + F+ FG I +V +D G SKGYGFV F + A +I++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 171 VNGMLLNSKIVFVGKFI-----PRKERE---KELG------EKAKLFTNVYIKNFGEDFN 216
+ G L + + P+ E K+L + + VY
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--Y 274
++ +++ F P+G I RV + +G+ FV + S E A A+ + NG ++G ++ Y
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCY 282
Query: 275 VGR 277
G+
Sbjct: 283 WGK 285
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 202 (76.2 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 58/234 (24%), Positives = 109/234 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-------NVYIKNFGEDFNDEKLKEMFE 225
G + K V V ++K+ + T +V++ + + E +K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 226 PYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA- 282
P+G I+ RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 283 --ERTQELKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ T E + ++ E +N+ N +Y + + ++ +R+ F+PFG I
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 47/183 (25%), Positives = 83/183 (45%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + + F+ FG I +V +D G SKGYGFV F + A +I++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 171 VNGMLLNSKIVFVGKFI-----PRKERE---KELG------EKAKLFTNVYIKNFGEDFN 216
+ G L + + P+ E K+L + + VY
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--Y 274
++ +++ F P+G I RV + +G+ FV + S E A A+ + NG ++G ++ Y
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCY 282
Query: 275 VGR 277
G+
Sbjct: 283 WGK 285
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 166 (63.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 45/166 (27%), Positives = 85/166 (51%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 39 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 98
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKA-KLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
N L+ + + + + + + L A +L + +++ N +KLKE+F GT+
Sbjct: 99 NKYDLSGRPLNIKEDPDGENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTV 158
Query: 231 TSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
+ + DGKSRG G V +E A +A+ +NG+ + + ++V
Sbjct: 159 KRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 204
Score = 138 (53.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 44/155 (28%), Positives = 77/155 (49%)
Query: 185 KFIP-RKEREKELGEKAKLFTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DG 240
+F P K++ GEK N V+I N D + +K++ E G +T + + +G
Sbjct: 16 RFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEG 75
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERL 300
KSRG G V ++ EF +KA++ N ++ G+ L + K + E RR ++R
Sbjct: 76 KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI-----KEDPDGENARR----ALQRT 126
Query: 301 NRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F+ GT+ A
Sbjct: 127 AGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRA 161
Score = 130 (50.8 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKS-----G-VGN-VFIKNLDKSIDNKAMYDT 130
++AL+TMN L GRP+ I + R++ G +G+ +F+ NLD + K + +
Sbjct: 92 KKALETMNKYDLSGRPLNIKEDPDGENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEV 151
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV---GKFI 187
FS G++ + +D+ G S+G G V FE A ++I NG L + + V K +
Sbjct: 152 FSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSV 211
Query: 188 PRKE 191
P ++
Sbjct: 212 PHED 215
Score = 125 (49.1 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
++++N D +KLKE F G + + +GKS+G G V ++SPE AEKA + NG
Sbjct: 536 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 595
Query: 266 KEVDGKILYVGRAQKKA 282
++ G+ + V R + A
Sbjct: 596 IKISGREIDV-RLDRNA 611
Score = 43 (20.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+G ++V+NL + ++L+++F+ G + A+
Sbjct: 532 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 564
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 200 (75.5 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 57/227 (25%), Positives = 108/227 (47%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K V V ++K+ F +V++ + + E +K F P+G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA---ERTQE 287
RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K + T E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 288 LKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ ++ + +N+ N +Y + + ++ +R+ F+PFG I
Sbjct: 184 SNTK-QLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 229
Score = 178 (67.7 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 57/218 (26%), Positives = 99/218 (45%)
Query: 80 ALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFSAFGS 136
AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+ FG
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 137 ILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFI-----PRK 190
I +V +D G SKGYGFV F + A +I+++ G L + + P+
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 191 ERE---KELG------EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
E K+L + + VY ++ +++ F P+G I RV +
Sbjct: 181 TYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 237
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ FV + S E A A+ + NG ++G ++ Y G+
Sbjct: 238 -KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 115 (45.5 bits), Expect = 0.00056, P = 0.00056
Identities = 55/226 (24%), Positives = 90/226 (39%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKS------------GVGN--------VFI 115
D E A+ M L GR IR W+ R P KS V N V+
Sbjct: 148 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYC 207
Query: 116 KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML 175
+ + + M TFS FG I+ +V D KGY FV F + E+A +I VNG
Sbjct: 208 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTT 262
Query: 176 LNSKIV--FVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG-TITS 232
+ +V + GK P + + + + Y +G+ + + +L + + P G + +
Sbjct: 263 IEGHVVKCYWGKETP--DMISPVQQNQIGYPQAY-GQWGQWYGNAQLGQ-YVPNGWQVPA 318
Query: 233 YRVMNNDGKSRGFG----FVAYESPEFAEKAVQAWNGKEVDGKILY 274
Y + +GF A+ ++ + Q NG + + Y
Sbjct: 319 YGMYGQAWNQQGFNQTQSSAAWMGANYSVQPPQGQNGSVLTNQAGY 364
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 204 (76.9 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 45/172 (26%), Positives = 94/172 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKV 171
V++ ++ + + F+ FG I S ++ D KG+ FV +E E A ++E++
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 172 NGMLLNSKIVFVGK--FIPRKERE-KELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
NG L+ + + VG+ +P+ ++ E+ E+AK F +Y+ + D ++E +K +FE +G
Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFG 251
Query: 229 TITSYRVMNNDG--KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
I ++ +G+GF+ Y + + ++A+ + N ++ G++L VGR+
Sbjct: 252 PILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 47/191 (24%), Positives = 86/191 (45%)
Query: 149 NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYI 208
+S+ + V + A +SI+ V L+ + + + + + + + L VY+
Sbjct: 78 SSEQHDLVSKAKKYAMEQSIKMV---LMKQTLAHQQQQLATQRTQVQRQQALALMCRVYV 134
Query: 209 KNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEKAVQAWNG 265
+ + ++ ++ F P+G I S M+ D K +GF FV YE PE A+ A++ NG
Sbjct: 135 GSISFELKEDTIRVAFTPFGPIKSIN-MSWDPITQKHKGFAFVEYEIPEGAQLALEQMNG 193
Query: 266 KEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKE 325
+ G+ + VGR + Q + E K NR +YV ++ + +E ++
Sbjct: 194 ALMGGRNIKVGRPSNMPQAQQVIDEVQEEAK--SFNR-----IYVASIHPDLSEEDIKSV 246
Query: 326 FTPFGTITSAK 336
F FG I K
Sbjct: 247 FEAFGPILYCK 257
Score = 40 (19.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 6/23 (26%), Positives = 19/23 (82%)
Query: 311 KNLDDSIDDERLRKEFTPFGTIT 333
+++D+++ +E +++E + FGT++
Sbjct: 548 EDVDETLQEE-IQEECSKFGTVS 569
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 200 (75.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 58/234 (24%), Positives = 109/234 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-------NVYIKNFGEDFNDEKLKEMFE 225
G + K V V ++K+ + T +V++ + + E +K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 226 PYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA- 282
P+G I+ RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 283 --ERTQELKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ T E + ++ E +N+ N +Y + + ++ +R+ F+PFG I
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 47/183 (25%), Positives = 83/183 (45%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + + F+ FG I +V +D G SKGYGFV F + A +I++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 171 VNGMLLNSKIVFVGKFI-----PRKERE---KELG------EKAKLFTNVYIKNFGEDFN 216
+ G L + + P+ E K+L + + VY
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--Y 274
++ +++ F P+G I RV + +G+ FV + S E A A+ + NG ++G ++ Y
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCY 282
Query: 275 VGR 277
G+
Sbjct: 283 WGK 285
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 200 (75.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 44/129 (34%), Positives = 75/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ +N L G+PI++ ++ + VG N+F+ NLD +D K +YDTFSAF
Sbjct: 66 DADYAIKILNMIKLYGKPIKV--NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + G SKG+ F++F + EA++ ++E +NG L ++ + V R +
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGTAAE 192
Score = 175 (66.7 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 44/183 (24%), Positives = 94/183 (51%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P + ++ +++ LD+ + +++ G ++S + +D N +G+GFV F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K E+ ++G N+++ N + +++ L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNK-ASAHEKNMDVG------ANIFVGNLDPEVDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+GF F+ + S E ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Query: 279 QKK 281
K+
Sbjct: 178 FKR 180
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 200 (75.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 44/129 (34%), Positives = 75/129 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + A+ +N L G+PI++ ++ + VG N+F+ NLD +D K +YDTFSAF
Sbjct: 66 DADYAIKILNMIKLYGKPIKV--NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAF 123
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D + G SKG+ F++F + EA++ ++E +NG L ++ + V R +
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 184 GERHGTAAE 192
Score = 175 (66.7 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 44/183 (24%), Positives = 94/183 (51%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETE 161
P + ++ +++ LD+ + +++ G ++S + +D N +G+GFV F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLK 221
E A+ +I+ +N + L K + V K E+ ++G N+++ N + +++ L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNK-ASAHEKNMDVG------ANIFVGNLDPEVDEKLLY 117
Query: 222 EMFEPYGTITSY-RVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
+ F +G I ++M + G S+GF F+ + S E ++ A++A NG+ + + + V A
Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Query: 279 QKK 281
K+
Sbjct: 178 FKR 180
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 206 (77.6 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 61/203 (30%), Positives = 103/203 (50%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAF-GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEK 170
V + NLD D + +Y+ FS G + + +D++ G SKG +V F T+EA K++
Sbjct: 489 VLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALA- 547
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTN-----VYIKNF-G--EDFNDEKLKE 222
NGM+L ++ + + K R + + + N +YI G + +++LK+
Sbjct: 548 ANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPNDIPLKLYIGGLLGPLSNITEQELKQ 607
Query: 223 MFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+F P+G I + + GKS+GFGF+ + A +A+ NG EV G+ + VG AQ
Sbjct: 608 LFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQD 667
Query: 281 K-----AERTQE--LKRRFEMLK 296
+ TQE LK++ +M K
Sbjct: 668 SKYLLACDNTQENILKQQ-QMAK 689
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 206 (77.6 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 61/203 (30%), Positives = 103/203 (50%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAF-GSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEK 170
V + NLD D + +Y+ FS G + + +D++ G SKG +V F T+EA K++
Sbjct: 489 VLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALA- 547
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTN-----VYIKNF-G--EDFNDEKLKE 222
NGM+L ++ + + K R + + + N +YI G + +++LK+
Sbjct: 548 ANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPNDIPLKLYIGGLLGPLSNITEQELKQ 607
Query: 223 MFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
+F P+G I + + GKS+GFGF+ + A +A+ NG EV G+ + VG AQ
Sbjct: 608 LFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQD 667
Query: 281 K-----AERTQE--LKRRFEMLK 296
+ TQE LK++ +M K
Sbjct: 668 SKYLLACDNTQENILKQQ-QMAK 689
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 200 (75.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 58/234 (24%), Positives = 109/234 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-------NVYIKNFGEDFNDEKLKEMFE 225
G + K V V ++K+ + T +V++ + + E +K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 226 PYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA- 282
P+G I+ RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 283 --ERTQELKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ T E + ++ E +N+ N +Y + + ++ +R+ F+PFG I
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Score = 146 (56.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 47/183 (25%), Positives = 83/183 (45%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + + F+ FG I +V +D G SKGYGFV F + A +I++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 171 VNGMLLNSKIVFVGKFI-----PRKERE---KELG------EKAKLFTNVYIKNFGEDFN 216
+ G L + + P+ E K+L + + VY
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--Y 274
++ +++ F P+G I RV + +G+ FV + S E A A+ + NG ++G ++ Y
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCY 282
Query: 275 VGR 277
G+
Sbjct: 283 WGK 285
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 178 (67.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 42/127 (33%), Positives = 68/127 (53%)
Query: 146 EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTN 205
+QG S GYGFV++ E A K++ +NG+ L +K++ V P E K G N
Sbjct: 80 QQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIK--G------AN 131
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAW 263
+Y+ ++ + L+ MF +G I + R++ N G S+G GF+ ++ AE+A+Q
Sbjct: 132 LYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQEL 191
Query: 264 NGKEVDG 270
NGK G
Sbjct: 192 NGKTPKG 198
Score = 140 (54.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ + F++FG
Sbjct: 97 DAEKAVNTLNGLRLQNKVIKVSYAR--PSSESIKGANLYVSGLPKNLSQPDLEGMFASFG 154
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D G SKG GF+ F+ A ++I+++NG
Sbjct: 155 KIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 104 (41.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N + + L ++F P+G + S +V+ + K +GFGFV + + A A+Q+
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG + ++L V K + T
Sbjct: 335 NGYTLGNRVLQVSFKTNKTKTT 356
Score = 47 (21.6 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL ++ L + F PFG + S K
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVK 303
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 199 (75.1 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 55/233 (23%), Positives = 105/233 (45%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-------NVYIKNFGEDFNDEKLKEMFE 225
G + K V V ++K+ + T +V++ + + E +K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 226 PYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
P+G I+ RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 RTQEL-KRRFEMLKIERLNRYQGVN---LYVKNLDDSIDDERLRKEFTPFGTI 332
+ + + L + + N +Y + + ++ +R+ F+PFG I
Sbjct: 188 APKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Score = 145 (56.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 47/183 (25%), Positives = 83/183 (45%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + + F+ FG I +V +D G SKGYGFV F + A +I++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 171 VNGMLLNSKIVFVGKFI-----PRKERE---KELG------EKAKLFTNVYIKNFGEDFN 216
+ G L + + P+ E K+L + + VY
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLT 226
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--Y 274
++ +++ F P+G I RV + +G+ FV + S E A A+ + NG ++G ++ Y
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCY 282
Query: 275 VGR 277
G+
Sbjct: 283 WGK 285
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 147 (56.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 39/139 (28%), Positives = 68/139 (48%)
Query: 208 IKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGK 266
I+N D++LK++F +GT+ R+ + DGK +GF FV ++ AEKA A N K
Sbjct: 128 IRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRK 187
Query: 267 EVDGKILYVGRAQKKAER-----TQELKRRFEMLKIERLNRYQGVNL----YVKNLDDSI 317
+ + + V E T+E + E E+ + + L ++NL
Sbjct: 188 AIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNLSFKC 247
Query: 318 DDERLRKEFTPFGTITSAK 336
+++ L++ F+ FGT+ AK
Sbjct: 248 EEDDLKQIFSEFGTVLEAK 266
Score = 125 (49.1 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 193 EKELG-EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAY 250
EK G K KL + + I+N ++ LK++F +GT+ ++ + DGK RGF FV +
Sbjct: 224 EKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLF 283
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+ A KA+ A NGK++ + + V A K
Sbjct: 284 KRMPEAGKALTAMNGKKIKDRQVAVDWAIAK 314
Score = 107 (42.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 29/110 (26%), Positives = 60/110 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+F++ L ++ N+ + + FS G + +C V D++ +G+G+V F E+ A +++++V
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKE 222
L + + +FV +K +K+ + AK TN K+ G+ +K E
Sbjct: 66 --LYDDQKIFV-TVAKKKLDDKKRKKNAK--TN---KDSGDTEESQKSGE 107
Score = 106 (42.4 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 184 GKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNND-GK 241
GK P K++ L ++I+N D +E L+E+ +G ++ RV MN D G
Sbjct: 420 GK-TPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGV 478
Query: 242 SRGFGFVAYESPEFAEKAVQA------WNGKEVDGKILYV 275
S+G F ++S E AEK + A ++G ++DG+ L +
Sbjct: 479 SKGCAFAQFKSKEAAEKCIAAALDEKEFSGIKLDGRRLNI 518
Score = 97 (39.2 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 99 SQRDPSLRKSGV-GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVH 157
+++ +RK + + I+NL + + FS FG++L K+ G +G+ FV
Sbjct: 223 TEKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVL 282
Query: 158 FETEEAANKSIEKVNGMLLNSKIVFV 183
F+ A K++ +NG + + V V
Sbjct: 283 FKRMPEAGKALTAMNGKKIKDRQVAV 308
Score = 94 (38.1 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
P+ +K G + I+NL ++ + FS FG++L ++ G KG+ FV F+
Sbjct: 117 PTKKKEN-GWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVS 175
Query: 163 AANKSIEKVNGMLLNSKIVFV 183
A K+ +N + + V V
Sbjct: 176 EAEKARAAMNRKAIRDRPVEV 196
Score = 55 (24.4 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
L ++NL +D+ L++ F+ FGT+ +
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETR 154
Score = 50 (22.7 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 76 DTERALDTMNFDALKGRPIRIMWS 99
+ E+A MN A++ RP+ + W+
Sbjct: 176 EAEKARAAMNRKAIRDRPVEVDWT 199
Score = 42 (19.8 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTIT 333
+G ++++NL ++E L + FG ++
Sbjct: 437 EGRTIFIRNLSFDSEEEGLEEVLLQFGELS 466
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 198 (74.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 57/227 (25%), Positives = 108/227 (47%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K V V ++K+ F +V++ + + E +K F P+G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA---ERTQE 287
RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K + T E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 288 LKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ ++ E +++ N +Y + + ++ +R+ F+PFG I
Sbjct: 184 SNTK-QLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQI 229
Score = 176 (67.0 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 55/218 (25%), Positives = 98/218 (44%)
Query: 80 ALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFSAFGS 136
AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+ FG
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 137 ILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIPRKER 192
I +V +D G SKGYGFV F + A +I+++ G L + + + + P +
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 193 EKELGEKAKLFTNV-----------YIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
E K + V Y ++ +++ F P+G I RV +
Sbjct: 181 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 237
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ F+ + S E A A+ + NG ++G ++ Y G+
Sbjct: 238 -KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 114 (45.2 bits), Expect = 0.00073, P = 0.00073
Identities = 50/205 (24%), Positives = 82/205 (40%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKS------------------GVGN--VFI 115
D E A+ M L GR IR W+ R P KS GN V+
Sbjct: 148 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYC 207
Query: 116 KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML 175
+ + + M TFS FG I+ +V D KGY F+ F + E+A +I VNG
Sbjct: 208 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFIRFSSHESAAHAIVSVNGTT 262
Query: 176 LNSKIV--FVGK----FIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG- 228
+ +V + GK I +++ ++G + Y +G+ + + + + P G
Sbjct: 263 IEGHVVKCYWGKETLDMINPVQQQNQIG-----YPPAY-GQWGQWYGNAQQIGQYVPNGW 316
Query: 229 TITSYRVMNNDGKSRGFGFVAYESP 253
+ +Y + +GF +P
Sbjct: 317 QVPAYGMYGQPWSQQGFNQTQSSAP 341
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 128 (50.1 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYE 251
RE+ +G K ++++N D +KLKE F G + + +GKS+G G V ++
Sbjct: 515 RER-IGSKGN---QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFD 570
Query: 252 SPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282
SPE AEKA + NG ++ G+ + V R + A
Sbjct: 571 SPESAEKACRIMNGIKISGREIDV-RLDRNA 600
Score = 124 (48.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 39/136 (28%), Positives = 65/136 (47%)
Query: 144 QDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP-RKEREKELGEKAKL 202
Q Q +S G V E +E+A + + SK +F P K++ GEK
Sbjct: 41 QQPQHSSSSNG-VKMENDESAKEEKSDLKEKSTGSKKA--NRFHPYSKDKNSGAGEKKGP 97
Query: 203 FTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKA 259
N V+I N D + +K++ E G +T + + +GKSRG G V ++ EF +KA
Sbjct: 98 NRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKA 157
Query: 260 VQAWNGKEVDGKILYV 275
++ N ++ G+ L +
Sbjct: 158 LETMNKYDLSGRPLNI 173
Score = 112 (44.5 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 225 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 284
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKEREKELGEKAKL 202
A ++I NG L + + V K +P +E G+ +L
Sbjct: 285 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQL 327
Score = 98 (39.6 bits), Expect = 9.2e-07, Sum P(3) = 9.2e-07
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
+ +L + +++ N +KLKE+F GT+ + + DGKSRG G V +E A
Sbjct: 227 QAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 286
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+ +NG+ + + ++V
Sbjct: 287 VQAISMFNGQFLFDRPMHV 305
Score = 84 (34.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161
Query: 172 N 172
N
Sbjct: 162 N 162
Score = 50 (22.7 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 155 KKALETMNKYDLSGRPLNI---KEDP 177
Score = 49 (22.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F+ GT+ A
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRA 262
Score = 45 (20.9 bits), Expect = 9.2e-07, Sum P(3) = 9.2e-07
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
ER+ +G ++V+NL + ++L+++F+ G + A+
Sbjct: 516 ERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 553
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 197 (74.4 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 47/128 (36%), Positives = 76/128 (59%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D E AL M F L + I+I +D K +G N+FI NLD +D + ++DTFS F
Sbjct: 66 DAEYALKVMKFVRLFNKEIKIKKENKD----KVDIGANLFIGNLDADVDERILHDTFSRF 121
Query: 135 GSIL-SCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
G+I+ + KV +DE G SKG+ F++F++ EA++ +IE +N L +K + V + +K+
Sbjct: 122 GTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISV-TYARKKDSN 180
Query: 194 KELGEKAK 201
+ G A+
Sbjct: 181 ERHGSSAE 188
Score = 140 (54.3 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 45/173 (26%), Positives = 89/173 (51%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE--QGNSKGYGFVHFETEEAANKSIEK 170
+ I++LD + + + F ++ + +D+ Q +S G +V F++ A ++ K
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHS-GRAYVEFQSSSDAEYAL-K 72
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
V + FV F + +KE +K + N++I N D ++ L + F +GTI
Sbjct: 73 V--------MKFVRLFNKEIKIKKENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTI 124
Query: 231 T-SYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+ +VM ++ G S+GF F+ ++S E ++ A++A N + + K + V A+KK
Sbjct: 125 IFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKK 177
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 193 (73.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 45/178 (25%), Positives = 88/178 (49%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+F+ NLD +I ++ + F+ G+++ K+ + G + Y FV F A +++ N
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE--GLNDPYAFVEFSDHNQATLALQSHN 99
Query: 173 GM-LLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
G LL ++ F PR+ E + +V++ + + + KL+E F +G ++
Sbjct: 100 GRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVS 159
Query: 232 SYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQE 287
+++ NN K +G+GFV+Y E AE+A+ NG + + + A +K + E
Sbjct: 160 EAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGE 217
Score = 124 (48.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 33/126 (26%), Positives = 60/126 (47%)
Query: 80 ALDTMNFDALKGRPIRIMWS--QRDPSLRKSGVG-----NVFIKNLDKSIDNKAMYDTFS 132
AL + N L + + + W+ R+P +S +VF+ +L ID+ + + F
Sbjct: 94 ALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFV 153
Query: 133 AFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
FG + K+ +D N KGYGFV + E A ++I+++NG L + + + +
Sbjct: 154 KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPD 213
Query: 192 REKELG 197
+ E G
Sbjct: 214 EDGERG 219
Score = 93 (37.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
T+VY+ N + +++++ F+ +G I R K +G+ FV +E+ E A +A+
Sbjct: 256 TSVYVGNIA-NLGEDEIRRAFDRFGPINEVRTF----KIQGYAFVKFETKESAARAIVQM 310
Query: 264 NGKEVDGKIL 273
N ++ G+I+
Sbjct: 311 NNADIGGQIV 320
Score = 44 (20.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++YV N+ + +DE +R+ F FG I +
Sbjct: 257 SVYVGNIANLGEDE-IRRAFDRFGPINEVR 285
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 147 (56.8 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 38/142 (26%), Positives = 73/142 (51%)
Query: 150 SKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIK 209
S GYGFV++ + A K+I +NG+ L +K + V P ++ N+Y+
Sbjct: 119 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD--------ANLYVS 170
Query: 210 NFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ ++L+++F YG I + R++ + G SRG GF+ ++ AE+A++ NG++
Sbjct: 171 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 230
Query: 268 VDGKI--LYVGRAQKKAERTQE 287
G + V A +++T +
Sbjct: 231 PPGATEPITVKFANNPSQKTNQ 252
Score = 133 (51.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+A++T+N L+ + I++ +++ PS N+++ L K++ K + FS +G
Sbjct: 132 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 189
Query: 136 SILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNG 173
I++ ++ D+ G S+G GF+ F+ A ++I+ +NG
Sbjct: 190 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Score = 112 (44.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N D ++ L +MF P+G +T+ +V+ N K +GFGFV + + A A+ +
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + ++L V K +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 99 (39.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 35/118 (29%), Positives = 54/118 (45%)
Query: 172 NGMLLNSKIVFVGKFIPRKEREKEL----G-----EKAKLFTNVYIKN-FGEDFNDEKLK 221
+G +SK + ++P+ ++EL G E KL + N F E F D L
Sbjct: 41 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLF 100
Query: 222 EMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQ 279
E + P + V+ +S G+GFV Y P+ AEKA+ NG + K + V A+
Sbjct: 101 EKWRPLDS--EVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 156
Score = 61 (26.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 288 LKRRFEMLKIERLNRYQGVNL----------YVKNLDDSIDDERLRKEFTPFGTITSAK 336
+K RF + I+ + G+N+ +V NL D+ L + F PFG +T+ K
Sbjct: 289 VKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 347
Score = 58 (25.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + + F + G I SCK+ +D+ GN F + T+ + EK
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQ----FREYFTDSSL---FEK 102
Query: 171 VNGMLLNSKIVFVGK 185
L+S+++ +GK
Sbjct: 103 WRP--LDSEVIVLGK 115
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 201 (75.8 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 49/191 (25%), Positives = 92/191 (48%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKV 171
VF+ L + ++ +YD F G + ++ +D+ G SKG +V F E++ +I
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKL------FTNVYIKNFGEDFNDEKLKEMFE 225
LL ++ + + +E E A+ F + + N + DE +K +FE
Sbjct: 302 GKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFE 361
Query: 226 PYGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQKKA 282
P+G I + +D +S+GFG++ Y +P A A++ NG ++ G+ + V G +
Sbjct: 362 PFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTT 421
Query: 283 ERTQELKRRFE 293
E T + +RF+
Sbjct: 422 ETTSSMLKRFD 432
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 196 (74.1 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 59/228 (25%), Positives = 107/228 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G SCK+ + N Y FV F A ++ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K V V ++K+ F +V++ + + E +K F P+G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA---ERTQE 287
RV+ + GKS+G+GFV++ + AE A+ G+ + G+ + A +K + TQE
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 288 LKRRFEMLKIERL-NRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ L+ E + N+ N +Y + + D+ +R+ F+PFG I
Sbjct: 186 --NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 231
Score = 188 (71.2 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 58/222 (26%), Positives = 98/222 (44%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFS 132
D AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+
Sbjct: 60 DAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 133 AFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIP 188
FG I +V +D G SKGYGFV F + A +I + G L + + + + P
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178
Query: 189 RKEREKELGEKAKLFTNV-----------YIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237
+ +E K F +V Y D+ +++ F P+G I RV
Sbjct: 179 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF- 237
Query: 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ FV + + E A A+ + NG ++G ++ Y G+
Sbjct: 238 ---PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 114 (45.2 bits), Expect = 0.00073, P = 0.00073
Identities = 42/136 (30%), Positives = 57/136 (41%)
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN--------------------VF 114
LD E A+ M L GR IR W+ R P KS N V+
Sbjct: 149 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVY 208
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM 174
+ + ++ M TFS FG I+ +V + KGY FV F T E+A +I VNG
Sbjct: 209 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGT 263
Query: 175 LLNSKIV--FVGKFIP 188
+ +V + GK P
Sbjct: 264 TIEGHVVKCYWGKESP 279
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 196 (74.1 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 59/228 (25%), Positives = 107/228 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G SCK+ + N Y FV F A ++ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K V V ++K+ F +V++ + + E +K F P+G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA---ERTQE 287
RV+ + GKS+G+GFV++ + AE A+ G+ + G+ + A +K + TQE
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 288 LKRRFEMLKIERL-NRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ L+ E + N+ N +Y + + D+ +R+ F+PFG I
Sbjct: 186 --NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 231
Score = 189 (71.6 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 61/238 (25%), Positives = 104/238 (43%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFS 132
D AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+
Sbjct: 60 DAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 133 AFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIP 188
FG I +V +D G SKGYGFV F + A +I + G L + + + + P
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178
Query: 189 RKEREKELGEKAKLFTNV-----------YIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237
+ +E K F +V Y D+ +++ F P+G I RV
Sbjct: 179 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF- 237
Query: 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGRAQKKAERT-QELKRRF 292
+G+ FV + + E A A+ + NG ++G ++ Y G+ + Q++ R F
Sbjct: 238 ---PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVIRFF 292
Score = 118 (46.6 bits), Expect = 0.00027, P = 0.00027
Identities = 54/207 (26%), Positives = 83/207 (40%)
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN--------------------VF 114
LD E A+ M L GR IR W+ R P KS N V+
Sbjct: 149 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVY 208
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM 174
+ + ++ M TFS FG I+ +V + KGY FV F T E+A +I VNG
Sbjct: 209 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGT 263
Query: 175 LLNSKIV--FVGKFIPRKEREKELGEKAKLFTNVYIK--NFGEDFNDEKLKEMFEPYG-T 229
+ +V + GK P + K + + F + Y + + + + + + + G
Sbjct: 264 TIEGHVVKCYWGKESP--DMTKNFQQVIRFFVD-YSQWGQWSQVYGNPQQYGQYMANGWQ 320
Query: 230 ITSYRVMNNDGKSRGFGFVAYESPEFA 256
+ Y V +GFG +SP A
Sbjct: 321 VPPYGVYGQPWNQQGFG--VDQSPSAA 345
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 196 (74.1 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 57/234 (24%), Positives = 109/234 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-------NVYIKNFGEDFNDEKLKEMFE 225
G + K V V ++K+ + T +V++ + + E +K F
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123
Query: 226 PYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA- 282
P+G I+ RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K
Sbjct: 124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Query: 283 --ERTQELKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTI 332
+ T E + ++ E +++ N +Y + + ++ +R+ F+PFG I
Sbjct: 184 APKSTYESNTK-QLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQI 236
Score = 144 (55.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 45/183 (24%), Positives = 82/183 (44%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+VF+ +L I + + F+ FG I +V +D G SKGYGFV F + A +I++
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 171 VNGMLLNSKIV---FVGKFIPRKEREKELGEKAKLFTNV-----------YIKNFGEDFN 216
+ G L + + + + P + E K + V Y
Sbjct: 163 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLT 222
Query: 217 DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--Y 274
++ +++ F P+G I RV + +G+ F+ + S E A A+ + NG ++G ++ Y
Sbjct: 223 EQLMRQTFSPFGQIMEIRVFPD----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCY 278
Query: 275 VGR 277
G+
Sbjct: 279 WGK 281
Score = 114 (45.2 bits), Expect = 0.00076, P = 0.00076
Identities = 50/205 (24%), Positives = 82/205 (40%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKS------------------GVGN--VFI 115
D E A+ M L GR IR W+ R P KS GN V+
Sbjct: 155 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYC 214
Query: 116 KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML 175
+ + + M TFS FG I+ +V D KGY F+ F + E+A +I VNG
Sbjct: 215 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFIRFSSHESAAHAIVSVNGTT 269
Query: 176 LNSKIV--FVGK----FIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG- 228
+ +V + GK I +++ ++G + Y +G+ + + + + P G
Sbjct: 270 IEGHVVKCYWGKETLDMINPVQQQNQIG-----YPPAY-GQWGQWYGNAQQIGQYVPNGW 323
Query: 229 TITSYRVMNNDGKSRGFGFVAYESP 253
+ +Y + +GF +P
Sbjct: 324 QVPAYGMYGQPWSQQGFNQTQSSAP 348
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 197 (74.4 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 54/191 (28%), Positives = 96/191 (50%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
++F++NL + + + F G ++ + + G+ +G G V F E+ +I K
Sbjct: 123 SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKF 181
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKA--KLFTN---VYIKNFGEDFNDEKLKEMFEP 226
+G L + + V + P E KE +KA + N V+I N N + LK+MF+
Sbjct: 182 DGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKE 241
Query: 227 YGTITSYRV-MNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV--GRAQKKAE 283
G + V ++ +G SRGFG V Y + + +A+ +NG EV+G++L V GR K+
Sbjct: 242 CGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRKN 301
Query: 284 RTQELKRRFEM 294
+ +RR ++
Sbjct: 302 NDRYNQRREDL 312
Score = 115 (45.5 bits), Expect = 0.00070, P = 0.00070
Identities = 33/150 (22%), Positives = 67/150 (44%)
Query: 187 IPRKEREKELGEKAKLFTN-VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGF 245
I ++ E++ + F N ++++N D E LKE+F G + ++ + G RG
Sbjct: 104 IVERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKGHHRGM 163
Query: 246 GFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQG 305
G V + E + A+ ++G + L V + E +E ++ +I+ G
Sbjct: 164 GTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDN-----G 218
Query: 306 VNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+++ NL S++ + L+ F G + A
Sbjct: 219 FEVFIINLPYSMNWQSLKDMFKECGHVLRA 248
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 199 (75.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 51/200 (25%), Positives = 98/200 (49%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIE-- 169
+F++ L + K + F G + ++ +D G SKG G+V F+ E + +I+
Sbjct: 176 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQLT 235
Query: 170 --KVNGMLLNSKIVFVGKFIPRKEREKELGEKAKL-FTNVYIKNFGEDFNDEKLKEMFEP 226
K+ G+ + +++ K + E G K F +Y+ N ++ L+ +FEP
Sbjct: 236 GQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEP 295
Query: 227 YGTITSYRVMNND-GKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERT 285
+G + ++ ++ G+SRG+GFV + P A +A++ NG ++ G+ + VG K T
Sbjct: 296 FGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGNDKF--T 353
Query: 286 QELKRRFEMLKIERLNRYQG 305
E +R + + N +QG
Sbjct: 354 PENTQRTQSQSANQSN-FQG 372
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 177 (67.4 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 46/178 (25%), Positives = 83/178 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G +CK+ D GN Y FV F A ++ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFT-------NVYIKNFGEDFNDEKLKEMFE 225
G + K V V ++K+ + T +V++ + + E +K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 226 PYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
P+G I+ RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Score = 109 (43.4 bits), Expect = 0.00077, P = 0.00077
Identities = 37/150 (24%), Positives = 63/150 (42%)
Query: 80 ALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN-------------VFIKNLDKSIDNKA 126
AL MN + G+ +++ W+ S +K + VF+ +L I +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 127 MYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGK 185
+ F+ FG I +V +D G SKGYGFV F + A +I+++ G L + +
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 186 FIPRKEREKELGEKAKLFTNVYIKNFGEDF 215
+ K E + + NFGE +
Sbjct: 182 ATRKPPAPKSTYECRCIGEEKEMWNFGEKY 211
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 130 (50.8 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEF 255
LG K ++++N D +KLKE F G + + +GKS+G G V +ESPE
Sbjct: 485 LGSKGN---QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPES 541
Query: 256 AEKAVQAWNGKEVDGKILYVGRAQKKA 282
AEKA + NG ++ G+ + V R + A
Sbjct: 542 AEKACRIMNGIKISGREIDV-RLDRNA 567
Score = 110 (43.8 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 185 KFIP-RKEREKELGEKAKLFTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DG 240
+F P K++ GEK N V+I N D + +K++ E G +T + + +G
Sbjct: 70 RFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEG 129
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
KSRG G V ++ EF +KA++ N ++ G+ L +
Sbjct: 130 KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 164
Score = 105 (42.0 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 216 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 275
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 276 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 307
Score = 84 (34.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 93 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152
Query: 172 N 172
N
Sbjct: 153 N 153
Score = 50 (22.7 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 146 KKALETMNKYDLSGRPLNI---KEDP 168
Score = 49 (22.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F+ GT+ A
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRA 253
Score = 44 (20.5 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RL +G ++V+NL + ++L+++F+ G + A+
Sbjct: 483 DRLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 520
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 194 (73.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 51/172 (29%), Positives = 88/172 (51%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFET 160
DP R S N+ + L + + ++ +Y F A G I +C++ +D + G S GY FV F +
Sbjct: 119 DP--RASNT-NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS 175
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKL 220
E + ++I+ +NG+ + +K + V P E K+ TN+Y+ N D++L
Sbjct: 176 EMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKD--------TNLYVTNLPRTITDDQL 227
Query: 221 KEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+F YG+I ++ + G+ RG FV Y E A++A+ A N +G
Sbjct: 228 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 279
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 130 (50.8 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEF 255
LG K ++++N D +KLKE F G + + +GKS+G G V +ESPE
Sbjct: 492 LGSKGN---QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPES 548
Query: 256 AEKAVQAWNGKEVDGKILYVGRAQKKA 282
AEKA + NG ++ G+ + V R + A
Sbjct: 549 AEKACRIMNGIKISGREIDV-RLDRNA 574
Score = 110 (43.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 185 KFIP-RKEREKELGEKAKLFTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DG 240
+F P K++ GEK N V+I N D + +K++ E G +T + + +G
Sbjct: 70 RFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEG 129
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
KSRG G V ++ EF +KA++ N ++ G+ L +
Sbjct: 130 KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 164
Score = 105 (42.0 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 216 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 275
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 276 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 307
Score = 84 (34.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 93 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152
Query: 172 N 172
N
Sbjct: 153 N 153
Score = 50 (22.7 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 146 KKALETMNKYDLSGRPLNI---KEDP 168
Score = 49 (22.3 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F+ GT+ A
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRA 253
Score = 44 (20.5 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RL +G ++V+NL + ++L+++F+ G + A+
Sbjct: 490 DRLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 527
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 129 (50.5 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 193 EKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYES 252
++ LG K ++++N D +KLKE F G + + +GKS+G G V ++S
Sbjct: 456 KERLGSKGN---QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDS 512
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282
PE AEKA + NG ++ G+ + V R + A
Sbjct: 513 PESAEKACRIMNGIKISGREIDV-RLDRNA 541
Score = 112 (44.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 31/110 (28%), Positives = 55/110 (50%)
Query: 185 KFIP-RKEREKELGEKAKLFTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DG 240
+F P KE+ EK + N V+I N D + +K++ E G +T + + +G
Sbjct: 29 RFHPYSKEKSTGSAEKKAINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEG 88
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
KSRG G V ++ EF +KA++ N ++ G+ L + + + L+R
Sbjct: 89 KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPEGEHARRALQR 138
Score = 105 (42.0 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 175 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 234
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 235 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 266
Score = 98 (39.6 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
+ +L + +++ N +KLKE+F GT+ + + DGKSRG G V +E A
Sbjct: 177 QAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 236
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+ +NG+ + + ++V
Sbjct: 237 VQAISMFNGQFLFDRPMHV 255
Score = 84 (34.6 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 52 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 111
Query: 172 N 172
N
Sbjct: 112 N 112
Score = 50 (22.7 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 105 KKALETMNKYDLSGRPLNI---KEDP 127
Score = 49 (22.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F+ GT+ A
Sbjct: 182 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRA 212
Score = 47 (21.6 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
ERL +G ++V+NL + ++L+++F+ G + A+
Sbjct: 457 ERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 494
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 178 (67.7 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 49/180 (27%), Positives = 89/180 (49%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ---------GNSKG 152
+PS K+ N+ I L +++ + + FS+ G + S K+ +D+ G+S G
Sbjct: 50 EPSDAKT---NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLG 106
Query: 153 YGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFG 212
YGFV++ A ++I +NG+ L SK + V P + K+ N+YI
Sbjct: 107 YGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKD--------ANLYISGLP 158
Query: 213 EDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ + +++MF YG I + R++ + G SRG F+ ++ AE+A++ NG + G
Sbjct: 159 KTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSG 218
Score = 159 (61.0 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 53/210 (25%), Positives = 99/210 (47%)
Query: 58 HQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKN 117
H LG G V P D ERA++T+N L+ + I++ +++ PS N++I
Sbjct: 103 HSLGYG--FVNYVNPS--DAERAINTLNGLRLQSKTIKVSYAR--PSSDGIKDANLYISG 156
Query: 118 LDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIEKVNGMLL 176
L K++ K + D F+ +G I++ ++ D+ G S+G F+ F+ A ++I+ +NG
Sbjct: 157 LPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKP 216
Query: 177 N--SKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYR 234
+ S+ + V KF + K ++L+ + + FG + + + F P S
Sbjct: 217 SGASEPITV-KFAANPNQSKNSQLLSQLY-HTQSRRFGGPVHHQPQRFRFSPMSVDHSVS 274
Query: 235 VMN-NDGKSRGFGFVAYESPEFAEKAVQAW 263
MN S G+ Y + A++ + W
Sbjct: 275 SMNVASSSSSGWCIFVYNLGQDADEGI-LW 303
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + K+L V K+ +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 101 (40.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 193 EKELG-EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND----------GK 241
E +G E + TN+ I ++ + E+L+ +F G + S +++ + G
Sbjct: 44 EDPMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGH 103
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
S G+GFV Y +P AE+A+ NG + K + V A+ ++
Sbjct: 104 SLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSD 145
Score = 55 (24.4 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVK 316
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 130 (50.8 bits), Expect = 4.7e-13, Sum P(3) = 4.7e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEF 255
LG K ++++N D +KLKE F G + + +GKS+G G V +ESPE
Sbjct: 509 LGSKGN---QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPES 565
Query: 256 AEKAVQAWNGKEVDGKILYVGRAQKKA 282
AEKA + NG ++ G+ + V R + A
Sbjct: 566 AEKACRIMNGIKISGREIDV-RLDRNA 591
Score = 110 (43.8 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 185 KFIP-RKEREKELGEKAKLFTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DG 240
+F P K++ GEK N V+I N D + +K++ E G +T + + +G
Sbjct: 70 RFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEG 129
Query: 241 KSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYV 275
KSRG G V ++ EF +KA++ N ++ G+ L +
Sbjct: 130 KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 164
Score = 105 (42.0 bits), Expect = 4.7e-13, Sum P(3) = 4.7e-13
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 216 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 275
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 276 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 307
Score = 84 (34.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 93 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152
Query: 172 N 172
N
Sbjct: 153 N 153
Score = 50 (22.7 bits), Expect = 4.7e-13, Sum P(3) = 4.7e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 146 KKALETMNKYDLSGRPLNI---KEDP 168
Score = 49 (22.3 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F+ GT+ A
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRA 253
Score = 44 (20.5 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+RL +G ++V+NL + ++L+++F+ G + A+
Sbjct: 507 DRLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 544
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 128 (50.1 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYE 251
RE+ +G K ++++N D +KLKE F G + + +GKS+G G V ++
Sbjct: 448 RER-IGSKGN---QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFD 503
Query: 252 SPEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282
SPE AEKA + NG ++ G+ + V R + A
Sbjct: 504 SPESAEKACRIMNGIKISGREIDV-RLDRNA 533
Score = 105 (42.0 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 172 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 231
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 232 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 263
Score = 98 (39.6 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
+ +L + +++ N +KLKE+F GT+ + + DGKSRG G V +E A
Sbjct: 174 QAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 233
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+ +NG+ + + ++V
Sbjct: 234 VQAISMFNGQFLFDRPMHV 252
Score = 84 (34.6 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 49 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 108
Query: 172 N 172
N
Sbjct: 109 N 109
Score = 50 (22.7 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 102 KKALETMNKYDLSGRPLNI---KEDP 124
Score = 45 (20.9 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
ER+ +G ++V+NL + ++L+++F+ G + A+
Sbjct: 449 ERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 486
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 193 (73.0 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 57/231 (24%), Positives = 106/231 (45%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + F G SCK+ D GN Y FV F A S+ +N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS 232
G + K V V ++K+ F +V++ + + + ++ F P+G I+
Sbjct: 69 GRKIMGKEVKVNWATSPSSQKKDTSNH---F-HVFVGDLSPEITTDDIRAAFAPFGRISD 124
Query: 233 YRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKA---ERTQE 287
RV+ + GKS+G+GFV++ + AE A+Q G+ + G+ + A +K + T E
Sbjct: 125 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYE 184
Query: 288 LKRRFEMLKIERLNRYQGVN--LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ E +N+ N +Y + + ++ +R+ F+PFG I +
Sbjct: 185 TNTKHLSFD-EVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVR 234
Score = 176 (67.0 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 58/218 (26%), Positives = 99/218 (45%)
Query: 80 ALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFSAFGS 136
+L MN + G+ +++ W+ PS +K N VF+ +L I + F+ FG
Sbjct: 63 SLAAMNGRKIMGKEVKVNWAT-SPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGR 121
Query: 137 ILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIPRKER 192
I +V +D G SKGYGFV F + A +I+++ G L + + + + P +
Sbjct: 122 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKA 181
Query: 193 EKELGEKAKLF---------TN--VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK 241
E K F +N VY ++ +++ F P+G I RV +
Sbjct: 182 TYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD--- 238
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ FV + S E A A+ + NG ++G I+ Y G+
Sbjct: 239 -KGYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGK 275
Score = 113 (44.8 bits), Expect = 0.00099, P = 0.00099
Identities = 51/197 (25%), Positives = 81/197 (41%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRK------------------SGVGN--VFI 115
D E A+ M L GR IR W+ R P K S N V+
Sbjct: 149 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYC 208
Query: 116 KNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGML 175
+ + + M TFS FG I+ +V D KGY FV F + E+A +I VNG
Sbjct: 209 GGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTS 263
Query: 176 LNSKIV--FVGKF---IPRKEREKELGEKAKL-FTNVYIKNFGEDFNDEKLKEMFEPYG- 228
L IV + GK + ++ ++ +++K+ F +G+ + + + + P G
Sbjct: 264 LEGHIVKCYWGKETTDMVSPMQQVQVPQQSKVGFAAQPYGQWGQWYGNAQQISQYVPNGW 323
Query: 229 TITSYRVMNNDGKSRGF 245
+ +Y V +GF
Sbjct: 324 QVPTYGVYGQAWNQQGF 340
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 129 (50.5 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 193 EKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYES 252
++ LG K ++++N D +KLKE F G + + +GKS+G G V ++S
Sbjct: 531 KERLGSKGN---QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDS 587
Query: 253 PEFAEKAVQAWNGKEVDGKILYVGRAQKKA 282
PE AEKA + NG ++ G+ + V R + A
Sbjct: 588 PESAEKACRIMNGIKISGREIDV-RLDRNA 616
Score = 118 (46.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 41/156 (26%), Positives = 70/156 (44%)
Query: 143 AQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV-FVG---KFIP-RKEREKELG 197
A E G G V + +E A + V K + +G +F P KE+
Sbjct: 52 AATESGGGSANG-VKMDNDETAKEEKAPVKEKHAKPKAIPSLGNKNRFHPYSKEKSTGSA 110
Query: 198 EKAKLFTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DGKSRGFGFVAYESPE 254
EK + N V+I N D + +K++ E G +T + + +GKSRG G V ++ E
Sbjct: 111 EKKAINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEE 170
Query: 255 FAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKR 290
F +KA++ N ++ G+ L + + + L+R
Sbjct: 171 FVKKALETMNKYDLSGRPLNIKEDPEGEHARRALQR 206
Score = 105 (42.0 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 243 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 302
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 303 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 334
Score = 98 (39.6 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
+ +L + +++ N +KLKE+F GT+ + + DGKSRG G V +E A
Sbjct: 245 QAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 304
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+ +NG+ + + ++V
Sbjct: 305 VQAISMFNGQFLFDRPMHV 323
Score = 84 (34.6 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 120 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 179
Query: 172 N 172
N
Sbjct: 180 N 180
Score = 50 (22.7 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 173 KKALETMNKYDLSGRPLNI---KEDP 195
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F+ GT+ A
Sbjct: 250 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRA 280
Score = 47 (21.6 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
ERL +G ++V+NL + ++L+++F+ G + A+
Sbjct: 532 ERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 569
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 172 (65.6 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 57/223 (25%), Positives = 116/223 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQ--DEQGN--SKGYGFVHFETEEAANKSI 168
+FIKNL+ S + + FS G++ SC +++ ++ G S G+GFV ++ E A K++
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 169 EKVNGMLLNS-KI-VFVG----KFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKE 222
+++ G +++ K+ V + K P R+K++ K + + + ++N + +++E
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARK-QTTSKILVRNIPFQADSREIRE 855
Query: 223 MFEPYGTITSYRV---MNNDGKSRGFGFVAYESPEFAEKAVQAW-NGKEVDGKILYVGRA 278
+F +G + + R+ M G RGFGFV + + + A++A A + + G+ L + A
Sbjct: 856 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTHLYGRRLVLEWA 915
Query: 279 QKKAERTQELKRRFEMLKIERLNRYQGVNL--YVKNLDDSIDD 319
+ Q L+R+ E + + V L ++ L+DS +D
Sbjct: 916 DSEVT-LQALRRKTAEHFHEPPKKKRSVVLDEILEQLEDSEND 957
Score = 151 (58.2 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 40/155 (25%), Positives = 75/155 (48%)
Query: 187 IPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK----- 241
+ +E E+E E++ ++IKN +E LK +F G + S + K
Sbjct: 718 VEEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALL 777
Query: 242 SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLN 301
S GFGFV Y+ PE A+KA++ G VDG L V +++ + R+ ++ + + +
Sbjct: 778 SMGFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTS 837
Query: 302 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ + V+N+ D +R+ F+ FG + + +
Sbjct: 838 K-----ILVRNIPFQADSREIRELFSTFGELKTVR 867
Score = 133 (51.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 51/201 (25%), Positives = 93/201 (46%)
Query: 89 LKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQG 148
L+G P + ++++ + + V I+ + + NK Y F F S K A Q
Sbjct: 299 LRGAPFNV--TEKNVMEFLAPLKPVAIRIVRNAHGNKTGY-VFVDFSSEEEVKKAL--QC 353
Query: 149 NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYI 208
N + G + E KSI NS + G+ + E E++L + +LF +
Sbjct: 354 NREYMGGRYIEVFR--EKSIPTAKAPPKNSTKAWQGRTLGEHEEEEDLADSGRLF----V 407
Query: 209 KNFGEDFNDEKLKEMFEPYGTITS--YRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGK 266
+N ++E L+++F YG ++ Y + + K +GF FV + PE A KA +G+
Sbjct: 408 RNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 467
Query: 267 EVDGKILYVGRAQKKAERTQE 287
G++L+V + K E +++
Sbjct: 468 VFQGRMLHVLPSTIKKEASED 488
Score = 97 (39.2 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIE 169
+ + +KNL + + F+AFG++ C + + G + +GF+ F++EE A ++
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALN 60
Query: 170 KVNGMLLNSKIVFV 183
N +++ + V
Sbjct: 61 HFNKSFIDTSRITV 74
Score = 83 (34.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 32/135 (23%), Positives = 58/135 (42%)
Query: 208 IKNFGEDFN--DEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
+K G FN ++ + E P + V N G G+ FV + S E +KA+Q N
Sbjct: 297 VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQC-NR 355
Query: 266 KEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQ-------GVNLYVKNLDDSID 318
+ + G+ + V R + K + + L ++ L+V+NL +
Sbjct: 356 EYMGGRYIEVFREKSIPTAKAPPKNSTKAWQGRTLGEHEEEEDLADSGRLFVRNLPYTSS 415
Query: 319 DERLRKEFTPFGTIT 333
+E L K F+ +G ++
Sbjct: 416 EEDLEKLFSKYGPLS 430
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSI 137
+ KNL + +TF FGS+
Sbjct: 590 ILAKNLPAGTQAAELQETFGRFGSL 614
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 18/93 (19%), Positives = 38/93 (40%)
Query: 71 QPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDT 130
+P ++ A D +NFD+ G+ ++ DP G+ K+ K + D
Sbjct: 159 EPSKGKSKPADDYLNFDSDSGQESEEEGTREDPEEEADGLER-------KAAAQKELSDM 211
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVH-FETEE 162
+++ + +++E+ + F E EE
Sbjct: 212 DYLRSKVVAAESSEEEESEDEAVNFEEGSEAEE 244
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 174 (66.3 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 38/72 (52%), Positives = 47/72 (65%)
Query: 221 KEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQK 280
KE F P+GTITS +VM G+S+GFGFV + SPE A KAV NG+ V K LYV AQ+
Sbjct: 3 KE-FSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 61
Query: 281 KAERTQELKRRF 292
K ER L ++
Sbjct: 62 KEERQAHLTNQY 73
Score = 124 (48.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 131 FSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRK 190
FS FG+I S KV E G SKG+GFV F + E A K++ ++NG ++ +K ++V ++
Sbjct: 5 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 191 EREKEL 196
ER+ L
Sbjct: 64 ERQAHL 69
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 174 (66.3 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 48/176 (27%), Positives = 87/176 (49%)
Query: 109 GVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE------------QGNSKGYGFV 156
G N+ + L +++ + FS+ G + S K+ +D+ +G+S GYGFV
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFV 77
Query: 157 HFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216
++ + A ++I +NG+ L SK + V P E K+ N+YI
Sbjct: 78 NYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKD--------ANLYISGLPRTMT 129
Query: 217 DEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKEVDG 270
+ +++MF P+G I + RV+ + G SRG F+ ++ AE+A+ ++NG + G
Sbjct: 130 QKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 185
Score = 140 (54.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 46/194 (23%), Positives = 93/194 (47%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D ERA++T+N L+ + I++ +++ PS N++I L +++ K + D F FG
Sbjct: 84 DAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFG 141
Query: 136 SILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKVNGMLL--NSKIVFVGKFIPRKER 192
I++ +V D+ G S+G F+ F+ A ++I NG +S+ + V KF +
Sbjct: 142 HIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITV-KFAANPNQ 200
Query: 193 EKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT--ITSYRVMN-NDGKSRGFGFVA 249
K + +++ + + FG + + + F P G ++S +N + G+
Sbjct: 201 NKNVALLSQICHSP-ARRFGGPVHHQAQRFRFSPMGVDHMSSISSVNVASSATSGWCIFV 259
Query: 250 YESPEFAEKAVQAW 263
Y + A++ + W
Sbjct: 260 YNLGQDADEGI-LW 272
Score = 122 (48.0 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N G+D ++ L +MF P+G +T+ +V+ N K +GFGFV + E A A+ +
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG + K L V K+ +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 55 (24.4 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V NL D+ L + F PFG +T+ K
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVK 285
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 125 (49.1 bits), Expect = 8.3e-13, Sum P(3) = 8.3e-13
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
++++N D +KLKE F G + + +GKS+G G V ++SPE AEKA + NG
Sbjct: 417 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 476
Query: 266 KEVDGKILYVGRAQKKA 282
++ G+ + V R + A
Sbjct: 477 IKISGREIDV-RLDRNA 492
Score = 116 (45.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 33/124 (26%), Positives = 61/124 (49%)
Query: 156 VHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP-RKEREKELGEKAKLFTN-VYIKNFGE 213
+H E +E+ + ++ +K +F P K++ GEK N V+I N
Sbjct: 1 IHRENDESVKEDKSELKEKSSGNKKA--NRFHPYSKDKNSGTGEKKGPNRNRVFISNIPY 58
Query: 214 DFNDEKLKEMF-EPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271
D + +K++ E G +T + + +GKSRG G V ++ EF +KA++ N ++ G+
Sbjct: 59 DMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGR 118
Query: 272 ILYV 275
L +
Sbjct: 119 PLNI 122
Score = 105 (42.0 bits), Expect = 8.3e-13, Sum P(3) = 8.3e-13
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 174 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 233
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 234 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 265
Score = 98 (39.6 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
+ +L + +++ N +KLKE+F GT+ + + DGKSRG G V +E A
Sbjct: 176 QAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 235
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+ +NG+ + + ++V
Sbjct: 236 VQAISMFNGQFLFDRPMHV 254
Score = 84 (34.6 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 51 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 110
Query: 172 N 172
N
Sbjct: 111 N 111
Score = 50 (22.7 bits), Expect = 8.3e-13, Sum P(3) = 8.3e-13
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 104 KKALETMNKYDLSGRPLNI---KEDP 126
Score = 43 (20.2 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+G ++V+NL + ++L+++F+ G + A+
Sbjct: 413 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 445
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 184 (69.8 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 46/157 (29%), Positives = 83/157 (52%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEK 170
N++I+ L ++ + +G I+S K D+ N KGYGFV F++ AA K++
Sbjct: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
+ + +++ K++E++ TN+YI N ++++L+ M +P+G +
Sbjct: 122 LKANGVQAQMA--------KQQEQDP-------TNLYISNLPISMDEQELENMLKPFGHV 166
Query: 231 TSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGK 266
S R++ + +G SRG GF ES E E +Q +NGK
Sbjct: 167 ISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
Score = 111 (44.1 bits), Expect = 0.00080, P = 0.00080
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQ 261
TN+YI+ D+ L ++ +PYG I S + + N + +G+GFV ++SP A+KAV
Sbjct: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
Query: 262 AWNGKEVDGKI 272
+ V ++
Sbjct: 121 SLKANGVQAQM 131
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 197 (74.4 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 62/218 (28%), Positives = 103/218 (47%)
Query: 76 DTERALDTMNFDALKGRPIRIMWS----QRDPSLRK----SGVGNVFI-KNLDKSIDNKA 126
D E+ L+ + GR + + ++ QR K SG + NL S +
Sbjct: 442 DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEET 501
Query: 127 MYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKF 186
+ + F I KV Q++QG SKGY F+ F + E A +++ N M + + + +
Sbjct: 502 LQEVFEKATFI---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQ 558
Query: 187 IPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-GKSRGF 245
PR + +K +++K ED +E LKE FE G++ + V + + G S+GF
Sbjct: 559 GPRGSPNAR-SQPSK---TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGF 612
Query: 246 GFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
GFV + S E A+ A +A E+DG + + A+ K E
Sbjct: 613 GFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 650
Score = 164 (62.8 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 63/256 (24%), Positives = 116/256 (45%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 135
D E+AL+ G I++ + S + + KNL +I + + F
Sbjct: 360 DLEKALELTGLKVF-GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE--- 415
Query: 136 SILSCK-VAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIPRKE 191
L + V+QD G SKG ++ F++E A K++E+ G ++ + V + G+ R+E
Sbjct: 416 DALEIRLVSQD--GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQE 473
Query: 192 REKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAY 250
R + + + + N +E L+E+FE T +V N GKS+G+ F+ +
Sbjct: 474 RTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEF 530
Query: 251 ESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYV 310
S E A++A+ + N E++G+ + R + + R R + K L+V
Sbjct: 531 ASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGSP-NARSQPSK----------TLFV 576
Query: 311 KNLDDSIDDERLRKEF 326
K L + +E L++ F
Sbjct: 577 KGLSEDTTEETLKESF 592
Score = 160 (61.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 49/180 (27%), Positives = 91/180 (50%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILS---CKVAQDEQGNSKGYGFVHFETEEAANKSI 168
N+FI NL+ NK++ + A + V G ++ +G+V FE+ E K++
Sbjct: 309 NLFIGNLNP---NKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL 365
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
E + G+ VF + K + ++ +K + + KN + +++LKE+FE
Sbjct: 366 E-LTGLK-----VFGNEIKLEKPKGRD-SKKVRAARTLLAKNLSFNITEDELKEVFEDAL 418
Query: 229 TITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK---ILYVGRAQKKAERT 285
I R+++ DGKS+G ++ ++S AEK ++ G E+DG+ + Y G ++ ERT
Sbjct: 419 EI---RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 475
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 125 (49.1 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
++++N D +KLKE F G + + +GKS+G G V ++SPE AEKA + NG
Sbjct: 468 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 527
Query: 266 KEVDGKILYVGRAQKKA 282
++ G+ + V R + A
Sbjct: 528 IKISGREIDV-RLDRNA 543
Score = 118 (46.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 37/136 (27%), Positives = 65/136 (47%)
Query: 144 QDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIP-RKEREKELGEKAKL 202
Q Q +S G V E +E+ + ++ +K +F P K++ GEK
Sbjct: 41 QPPQHSSSSNG-VKMENDESVKEEKSELKEKSTGNKKA--NRFHPYSKDKNSGTGEKKGP 97
Query: 203 FTN-VYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKA 259
N V+I N D + +K++ E G +T + + +GKSRG G V ++ EF +KA
Sbjct: 98 NRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKA 157
Query: 260 VQAWNGKEVDGKILYV 275
++ N ++ G+ L +
Sbjct: 158 LETMNKYDLSGRPLNI 173
Score = 105 (42.0 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 104 SLRKSGVGN-VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G+ +F+ NLD + K + + FS G++ + +D+ G S+G G V FE
Sbjct: 225 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 284
Query: 163 AANKSIEKVNGMLLNSKIVFV---GKFIPRKE 191
A ++I NG L + + V K +P ++
Sbjct: 285 EAVQAISMFNGQFLFDRPMHVKMDDKSVPHED 316
Score = 98 (39.6 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
+ +L + +++ N +KLKE+F GT+ + + DGKSRG G V +E A
Sbjct: 227 QAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 286
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+ +NG+ + + ++V
Sbjct: 287 VQAISMFNGQFLFDRPMHV 305
Score = 84 (34.6 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ + +A+ D G + ++ +D +G S+G G V F+ EE K++E +
Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161
Query: 172 N 172
N
Sbjct: 162 N 162
Score = 50 (22.7 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++AL+TMN L GRP+ I + DP
Sbjct: 155 KKALETMNKYDLSGRPLNI---KEDP 177
Score = 43 (20.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+G ++V+NL + ++L+++F+ G + A+
Sbjct: 464 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE 496
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 190 (71.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 58/222 (26%), Positives = 98/222 (44%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFS 132
D AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 133 AFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIP 188
FG I +V +D G SKGYGFV F + A +I + G L + + + + P
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195
Query: 189 RKEREKELGEKAKLFTNV-----------YIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237
+ +E K F +V Y D+ +++ F P+G I RV
Sbjct: 196 APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF- 254
Query: 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ FV + + E A A+ + NG ++G ++ Y G+
Sbjct: 255 ---PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 166 (63.5 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 60/244 (24%), Positives = 110/244 (45%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-----GNSKG-----------YGFV 156
+++ NL + + + FS G SCK+ ++ +S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 157 HFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216
F A ++ +NG + K V V ++K+ F +V++ + +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEIT 126
Query: 217 DEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274
E +K F P+G I+ RV+ + GKS+G+GFV++ + AE A+ G+ + G+ +
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 275 VGRAQKKA---ERTQELKRRFEMLKIERL-NRYQGVN--LYVKNLDDSIDDERLRKEFTP 328
A +K + TQE + L+ E + N+ N +Y + + D+ +R+ F+P
Sbjct: 187 TNWATRKPPAPKSTQETNTK--QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGTI 332
FG I
Sbjct: 245 FGQI 248
Score = 114 (45.2 bits), Expect = 0.00071, P = 0.00071
Identities = 43/136 (31%), Positives = 58/136 (42%)
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDP------------SLRKSGVGN--------VF 114
LD E A+ M L GR IR W+ R P LR V N V+
Sbjct: 166 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVY 225
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM 174
+ + ++ M TFS FG I+ +V + KGY FV F T E+A +I VNG
Sbjct: 226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGT 280
Query: 175 LLNSKIV--FVGKFIP 188
+ +V + GK P
Sbjct: 281 TIEGHVVKCYWGKESP 296
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 190 (71.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 58/222 (26%), Positives = 98/222 (44%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFS 132
D AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 133 AFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIP 188
FG I +V +D G SKGYGFV F + A +I + G L + + + + P
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195
Query: 189 RKEREKELGEKAKLFTNV-----------YIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237
+ +E K F +V Y D+ +++ F P+G I RV
Sbjct: 196 APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF- 254
Query: 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ FV + + E A A+ + NG ++G ++ Y G+
Sbjct: 255 ---PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 166 (63.5 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 60/244 (24%), Positives = 110/244 (45%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-----GNSKG-----------YGFV 156
+++ NL + + + FS G SCK+ ++ +S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 157 HFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216
F A ++ +NG + K V V ++K+ F +V++ + +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEIT 126
Query: 217 DEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274
E +K F P+G I+ RV+ + GKS+G+GFV++ + AE A+ G+ + G+ +
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 275 VGRAQKKA---ERTQELKRRFEMLKIERL-NRYQGVN--LYVKNLDDSIDDERLRKEFTP 328
A +K + TQE + L+ E + N+ N +Y + + D+ +R+ F+P
Sbjct: 187 TNWATRKPPAPKSTQETNTK--QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGTI 332
FG I
Sbjct: 245 FGQI 248
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 43/136 (31%), Positives = 58/136 (42%)
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDP------------SLRKSGVGN--------VF 114
LD E A+ M L GR IR W+ R P LR V N V+
Sbjct: 166 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVY 225
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM 174
+ + ++ M TFS FG I+ +V + KGY FV F T E+A +I VNG
Sbjct: 226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGT 280
Query: 175 LLNSKIV--FVGKFIP 188
+ +V + GK P
Sbjct: 281 TIEGHVVKCYWGKESP 296
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 190 (71.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 58/222 (26%), Positives = 98/222 (44%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFS 132
D AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 133 AFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIP 188
FG I +V +D G SKGYGFV F + A +I + G L + + + + P
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195
Query: 189 RKEREKELGEKAKLFTNV-----------YIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237
+ +E K F +V Y D+ +++ F P+G I RV
Sbjct: 196 APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF- 254
Query: 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ FV + + E A A+ + NG ++G ++ Y G+
Sbjct: 255 ---PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 166 (63.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 60/244 (24%), Positives = 110/244 (45%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-----GNSKG-----------YGFV 156
+++ NL + + + FS G SCK+ ++ +S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 157 HFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216
F A ++ +NG + K V V ++K+ F +V++ + +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEIT 126
Query: 217 DEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274
E +K F P+G I+ RV+ + GKS+G+GFV++ + AE A+ G+ + G+ +
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 275 VGRAQKKA---ERTQELKRRFEMLKIERL-NRYQGVN--LYVKNLDDSIDDERLRKEFTP 328
A +K + TQE + L+ E + N+ N +Y + + D+ +R+ F+P
Sbjct: 187 TNWATRKPPAPKSTQETNTK--QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGTI 332
FG I
Sbjct: 245 FGQI 248
Score = 114 (45.2 bits), Expect = 0.00079, P = 0.00079
Identities = 43/136 (31%), Positives = 58/136 (42%)
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDP------------SLRKSGVGN--------VF 114
LD E A+ M L GR IR W+ R P LR V N V+
Sbjct: 166 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVY 225
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM 174
+ + ++ M TFS FG I+ +V + KGY FV F T E+A +I VNG
Sbjct: 226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGT 280
Query: 175 LLNSKIV--FVGKFIP 188
+ +V + GK P
Sbjct: 281 TIEGHVVKCYWGKESP 296
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 190 (71.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 58/222 (26%), Positives = 98/222 (44%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKAMYDTFS 132
D AL MN + G+ +++ W+ PS +K N VF+ +L I + + F+
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 133 AFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIV---FVGKFIP 188
FG I +V +D G SKGYGFV F + A +I + G L + + + + P
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195
Query: 189 RKEREKELGEKAKLFTNV-----------YIKNFGEDFNDEKLKEMFEPYGTITSYRVMN 237
+ +E K F +V Y D+ +++ F P+G I RV
Sbjct: 196 APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF- 254
Query: 238 NDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL--YVGR 277
+G+ FV + + E A A+ + NG ++G ++ Y G+
Sbjct: 255 ---PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 166 (63.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 60/244 (24%), Positives = 110/244 (45%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-----GNSKG-----------YGFV 156
+++ NL + + + FS G SCK+ ++ +S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 157 HFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216
F A ++ +NG + K V V ++K+ F +V++ + +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH---F-HVFVGDLSPEIT 126
Query: 217 DEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILY 274
E +K F P+G I+ RV+ + GKS+G+GFV++ + AE A+ G+ + G+ +
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 275 VGRAQKKA---ERTQELKRRFEMLKIERL-NRYQGVN--LYVKNLDDSIDDERLRKEFTP 328
A +K + TQE + L+ E + N+ N +Y + + D+ +R+ F+P
Sbjct: 187 TNWATRKPPAPKSTQETNTK--QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGTI 332
FG I
Sbjct: 245 FGQI 248
Score = 114 (45.2 bits), Expect = 0.00079, P = 0.00079
Identities = 43/136 (31%), Positives = 58/136 (42%)
Query: 75 LDTERALDTMNFDALKGRPIRIMWSQRDP------------SLRKSGVGN--------VF 114
LD E A+ M L GR IR W+ R P LR V N V+
Sbjct: 166 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVY 225
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM 174
+ + ++ M TFS FG I+ +V + KGY FV F T E+A +I VNG
Sbjct: 226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGT 280
Query: 175 LLNSKIV--FVGKFIP 188
+ +V + GK P
Sbjct: 281 TIEGHVVKCYWGKESP 296
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 189 (71.6 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 44/129 (34%), Positives = 73/129 (56%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D + + MN L G+PIR+ ++ + VG N+FI NLD +D K +YDTFSAF
Sbjct: 85 DADYGIKIMNMIKLYGKPIRV--NKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAF 142
Query: 135 GSILSC-KVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G IL K+ +D E G SK + F++F + EA++ +++ +NG L ++ + V + +
Sbjct: 143 GVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHK 202
Query: 193 EKELGEKAK 201
+ G A+
Sbjct: 203 GERHGSAAE 211
Score = 137 (53.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/134 (30%), Positives = 70/134 (52%)
Query: 151 KGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKN 210
+GYGFV F +EE A+ I+ +N + L K + V K +K L A N++I N
Sbjct: 73 QGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNK---ASAHQKNLDVGA----NIFIGN 125
Query: 211 FGEDFNDEKLKEMFEPYGTITSY-RVMNND--GKSRGFGFVAYESPEFAEKAVQAWNGKE 267
+ +++ L + F +G I ++M + GKS+ F F+ + S E ++ A+ A NG+
Sbjct: 126 LDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQY 185
Query: 268 VDGKILYVGRAQKK 281
+ + + V A KK
Sbjct: 186 LCNRPISVSYAFKK 199
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 173 (66.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 46/176 (26%), Positives = 92/176 (52%)
Query: 100 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHF 158
Q+ + G VF+ ++ S++ + + F+ FG+IL + +D++ N SKG F+ F
Sbjct: 7 QQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITF 66
Query: 159 ETEEAANKSIEKVN--GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFN 216
T+E A+ ++ N G L + + K + K + E+ K+ ++I G +
Sbjct: 67 STKEEADNALNTTNESGTFLEN----MNKPLQVKYSDNEI---EKMERKLFIGMLGTS-D 118
Query: 217 DEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271
+++++ +F YG I ++ DGK +G+GF+ Y + + +E A+ +E+DGK
Sbjct: 119 EDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENAL-----REIDGK 169
Score = 144 (55.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 36/114 (31%), Positives = 66/114 (57%)
Query: 171 VN-GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGT 229
VN GM+ ++ + +++++++ E LF +Y F + DE+LK++F PYG
Sbjct: 257 VNFGMMQGNQAFDYNQQQQQQQQQQQPNESNDLF--IYYLPF--TYGDEELKQLFAPYGN 312
Query: 230 ITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+ S +V N +S+ FGFV+Y++ + A A+Q NG+ ++GK L V ++K
Sbjct: 313 VISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREK 366
Score = 115 (45.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 45/186 (24%), Positives = 88/186 (47%)
Query: 76 DTERALDTMN----FDALKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTF 131
+ + AL+T N F +P+++ +S D + K +FI L S D + F
Sbjct: 71 EADNALNTTNESGTFLENMNKPLQVKYS--DNEIEKME-RKLFIGMLGTS-DEDQIRILF 126
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGM--LLNSKIVFVGKFIP- 188
+G I + +++ G KGYGF+ + T + + ++ +++G L S + + KF
Sbjct: 127 GNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADT 186
Query: 189 -RKEREKELGEKAKLFT--NVYIKNFGEDFNDEKLKEM---FEP--YGTITSY-RVMNND 239
R++R+K LG + N Y +N + ++ ++ ++P YG + + M N+
Sbjct: 187 ERQKRKKLLGNQQPPQNPFNFYQQNQQQQQQQQQQQQQQNQYQPFFYGQNSQMSQAMGNN 246
Query: 240 GKSRGF 245
G RG+
Sbjct: 247 GY-RGY 251
Score = 55 (24.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+L++ L + DE L++ F P+G + S+K
Sbjct: 288 DLFIYYLPFTYGDEELKQLFAPYGNVISSK 317
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 191 (72.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 42/132 (31%), Positives = 74/132 (56%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTF 131
Y + E A + +N L G+ +R + +D R VG N+FI NLD +D K ++D F
Sbjct: 70 YEYECEYAANILNMTKLFGKALRCNKATQDK--RSFDVGANLFIGNLDDEVDEKMLFDIF 127
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S+FG I++ KV ++E SKG+GF+ ++ E+++ +IE +N + +K V + +
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDS 187
Query: 192 REKELGEKAKLF 203
+ + G A+ F
Sbjct: 188 KGERHGTAAERF 199
Score = 189 (71.6 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 53/202 (26%), Positives = 101/202 (50%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAAN 165
++ ++I NLD +D + + + F G++ + + +D+ G GYGFV +E E
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225
+ +N L K + K K R ++G N++I N ++ +++ L ++F
Sbjct: 76 YAANILNMTKLFGKALRCNKATQDK-RSFDVG------ANLFIGNLDDEVDEKMLFDIFS 128
Query: 226 PYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK--- 281
+G I + +VM N D S+G GF++Y++ E ++ A++ N + + K +++ A KK
Sbjct: 129 SFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Query: 282 AERTQELKRRFEMLKIERLNRY 303
ER RF + + LN Y
Sbjct: 189 GERHGTAAERF-IAANKALNLY 209
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 191 (72.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 42/132 (31%), Positives = 74/132 (56%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTF 131
Y + E A + +N L G+ +R + +D R VG N+FI NLD +D K ++D F
Sbjct: 70 YEYECEYAANILNMTKLFGKALRCNKATQDK--RSFDVGANLFIGNLDDEVDEKMLFDIF 127
Query: 132 SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
S+FG I++ KV ++E SKG+GF+ ++ E+++ +IE +N + +K V + +
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDS 187
Query: 192 REKELGEKAKLF 203
+ + G A+ F
Sbjct: 188 KGERHGTAAERF 199
Score = 189 (71.6 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 53/202 (26%), Positives = 101/202 (50%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAAN 165
++ ++I NLD +D + + + F G++ + + +D+ G GYGFV +E E
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 166 KSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFE 225
+ +N L K + K K R ++G N++I N ++ +++ L ++F
Sbjct: 76 YAANILNMTKLFGKALRCNKATQDK-RSFDVG------ANLFIGNLDDEVDEKMLFDIFS 128
Query: 226 PYGTITSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK--- 281
+G I + +VM N D S+G GF++Y++ E ++ A++ N + + K +++ A KK
Sbjct: 129 SFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Query: 282 AERTQELKRRFEMLKIERLNRY 303
ER RF + + LN Y
Sbjct: 189 GERHGTAAERF-IAANKALNLY 209
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 189 (71.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 45/180 (25%), Positives = 92/180 (51%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETE 161
P+ +F+ L +ID+ + F G ++ +V + G S+GYG+V FE++
Sbjct: 160 PAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESK 219
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTN--------VYIKNFGE 213
AA K++E++ G ++ + + + + K ++AK + + ++I N
Sbjct: 220 SAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSF 279
Query: 214 DFNDEKLKEMFEPYGTITSYRVMNNDG--KSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271
+ N + L +F YG + S RV + + +GFG+V + S + A+ A++A NG+ ++G+
Sbjct: 280 NANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ + +D LK FE G + RV+ GKSRG+G+V +ES AEKA++
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLR 323
GKE+DG+ + + + K ++ R + + L++ NL + + + L
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD--TLFIGNLSFNANRDNLF 287
Query: 324 KEFTPFGTITSAK 336
F +G + S +
Sbjct: 288 NVFGEYGNVISCR 300
Score = 118 (46.6 bits), Expect = 0.00029, P = 0.00029
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSG------VGN--------VFIKNLDKSID 123
E+AL+ M + GRPI + S P KS G+ +FI NL + +
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNAN 282
Query: 124 NKAMYDTFSAFGSILSCKV-AQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
+++ F +G+++SC+V + KG+G+V F + + A ++E +NG + +
Sbjct: 283 RDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 189 (71.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 45/180 (25%), Positives = 92/180 (51%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETE 161
P+ +F+ L +ID+ + F G ++ +V + G S+GYG+V FE++
Sbjct: 160 PAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESK 219
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTN--------VYIKNFGE 213
AA K++E++ G ++ + + + + K ++AK + + ++I N
Sbjct: 220 SAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSF 279
Query: 214 DFNDEKLKEMFEPYGTITSYRVMNNDG--KSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271
+ N + L +F YG + S RV + + +GFG+V + S + A+ A++A NG+ ++G+
Sbjct: 280 NANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAW 263
+++ + +D LK FE G + RV+ GKSRG+G+V +ES AEKA++
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLR 323
GKE+DG+ + + + K ++ R + + L++ NL + + + L
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD--TLFIGNLSFNANRDNLF 287
Query: 324 KEFTPFGTITSAK 336
F +G + S +
Sbjct: 288 NVFGEYGNVISCR 300
Score = 118 (46.6 bits), Expect = 0.00029, P = 0.00029
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSG------VGN--------VFIKNLDKSID 123
E+AL+ M + GRPI + S P KS G+ +FI NL + +
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNAN 282
Query: 124 NKAMYDTFSAFGSILSCKV-AQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSK 179
+++ F +G+++SC+V + KG+G+V F + + A ++E +NG + +
Sbjct: 283 RDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 140 (54.3 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 36/134 (26%), Positives = 76/134 (56%)
Query: 159 ETEEAANKSIEKVNGMLLNSKIVFVGKFIPR-----KEREKELGEKAKLFTNVYIKNFGE 213
+T + A +++ + + + +G+ +P+ +++++ GE + N++I + +
Sbjct: 463 DTLQQAFTGVQQYTAIYPATTLTPIGQSLPQPPQVIQQQQQREGEGPE-GCNLFIYHLPQ 521
Query: 214 DFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGK 271
+F D +L +MF P+GT+ S +V + +S+ FGFV++++P A+ A+QA NG ++ K
Sbjct: 522 EFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 581
Query: 272 ILYVG-RAQKKAER 284
L V + K A R
Sbjct: 582 RLKVQLKRPKDASR 595
Score = 140 (54.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKV 171
+FI + ++++ K + F FG I V +D G KG F+ + E+A I+
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESA---IKAQ 194
Query: 172 NGMLLNSKIVFVGKFIPRKEREKEL-GEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTI 230
N + + + + I K + E GE KLF + K E E + +FEPYG I
Sbjct: 195 NALHEQKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNKQQTE----EDVYRLFEPYGVI 250
Query: 231 TSYRVMNN-DGKSRGFGFVAYESPEFAEKAVQAWNGKE 267
V+ DG S+G FV + + A+ A+ A +G +
Sbjct: 251 EECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQ 288
Score = 99 (39.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 26/82 (31%), Positives = 38/82 (46%)
Query: 92 RPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK 151
RPI++ D R +F+ L+K + +Y F +G I C V + GNSK
Sbjct: 208 RPIQV--KPADSESRGED-RKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSK 264
Query: 152 GYGFVHFETEEAANKSIEKVNG 173
G FV F T A +I ++G
Sbjct: 265 GCAFVKFSTHAEAQSAISALHG 286
Score = 73 (30.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+G NL++ +L D L + F PFGT+ S+K
Sbjct: 510 EGCNLFIYHLPQEFGDNELMQMFLPFGTVISSK 542
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 135 (52.6 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 196 LGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEF 255
+ +++K ++++N D + +KLKE F G + + +GKS+G G V ++SPE
Sbjct: 472 MSDRSKGGCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGKSKGCGTVRFDSPES 531
Query: 256 AEKAVQAWNGKEVDGK 271
AEKA + NG +++G+
Sbjct: 532 AEKACRLMNGTKINGR 547
Score = 114 (45.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/126 (25%), Positives = 59/126 (46%)
Query: 185 KFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMF-EPYGTITSYRVMNN-DGKS 242
++ P KER +K V+I N D + +K++ E G +T + + +GKS
Sbjct: 62 RYHPYKERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKS 121
Query: 243 RGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNR 302
RG G V ++ EF +KA++ + +++G+ L + + L+R M R
Sbjct: 122 RGCGVVEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHARRVLQRSGRMYGGGRGQD 181
Query: 303 YQGVNL 308
G+N+
Sbjct: 182 SSGINI 187
Score = 106 (42.4 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN-DGKSRGFGFVAYESPEFA 256
+ +L +++ N +KLKE+F GT+ V + DGKSRG G V +E P A
Sbjct: 206 QAGRLGATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEA 265
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+ +NG+ + + ++V
Sbjct: 266 VQAISMFNGQMLFDRQMHV 284
Score = 101 (40.6 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 104 SLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
+L+ +G +F+ NLD + K + + F G++ V +D+ G S+G G V FE
Sbjct: 204 ALQAGRLGATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPL 263
Query: 163 AANKSIEKVNGMLL 176
A ++I NG +L
Sbjct: 264 EAVQAISMFNGQML 277
Score = 79 (32.9 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 113 VFIKNLDKSIDNKAMYDTF-SAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
VFI N+ +A+ D G + ++ +D +G S+G G V F+ EE K+IE +
Sbjct: 83 VFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIEVM 142
Query: 172 NGMLLNSK 179
+ LN +
Sbjct: 143 SKHDLNGR 150
Score = 49 (22.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
G ++V NLD + ++L++ F GT+ A
Sbjct: 211 GATIFVANLDFKVGWKKLKEVFGMAGTVRRA 241
Score = 46 (21.3 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 305 GVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
G ++V+NL + ++L+++F+ G + A+
Sbjct: 479 GCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAE 510
Score = 40 (19.1 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDP 103
++A++ M+ L GRP+ I + DP
Sbjct: 136 KKAIEVMSKHDLNGRPLNI---KEDP 158
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 187 (70.9 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 47/129 (36%), Positives = 77/129 (59%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAMYDTFSAF 134
D E A MN L G+PIR+ + D + +G +F+ NLD + + +YDTFS F
Sbjct: 66 DAEYASRIMNGIRLYGKPIRVNKASADKQ-KSVEIGAELFVGNLDPMVTEQVLYDTFSRF 124
Query: 135 GSILSC-KVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKERE 193
G++++ KVA+D+ SKGYGFV F E+++ +I +NG L +K V V ++ +K+ +
Sbjct: 125 GNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSV-QYAYKKDGK 183
Query: 194 KEL-GEKAK 201
E G++A+
Sbjct: 184 GERHGDQAE 192
Score = 180 (68.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 50/172 (29%), Positives = 90/172 (52%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS-KGYGFVHFETEEAANKSIEKV 171
V+I NLD+ + + +++ G I++ + +D S +GYGFV F +EE A + +
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 172 NGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
NG+ L K + V K K++ E+G A+LF + N ++ L + F +G +
Sbjct: 75 NGIRLYGKPIRVNKASADKQKSVEIG--AELF----VGNLDPMVTEQVLYDTFSRFGNLV 128
Query: 232 SY-RVMNNDGK-SRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
+ +V +D S+G+GFV++ E ++ A+ NG+ + K + V A KK
Sbjct: 129 NLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKK 180
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 186 (70.5 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 49/187 (26%), Positives = 95/187 (50%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDE-QGNSKGYGFVHFETEEAANKSIE 169
G +++ NL +I + + F G+++ ++ D+ S+G+GFV + E A ++++
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 170 KVNGMLLNSKIVFVG-KFIPRK-ERE---KELGEKAKLFTN----VYIKNFGEDFNDEKL 220
N + + V V +PR E E ++ + + + + VY N G + + L
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 221 KEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRA 278
K+ F + +V+ N G+SRGFGF+++ES E + A+ NG EV+G+ L + A
Sbjct: 236 KDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Query: 279 QKKAERT 285
++ + T
Sbjct: 296 SEREKPT 302
WARNING: HSPs involving 913 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 336 336 0.00092 116 3 11 22 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1163
No. of states in DFA: 607 (65 KB)
Total size of DFA: 215 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.18u 0.07s 30.25t Elapsed: 00:00:50
Total cpu time: 30.30u 0.07s 30.37t Elapsed: 00:00:50
Start: Thu Aug 15 13:21:55 2013 End: Thu Aug 15 13:22:45 2013
WARNINGS ISSUED: 2