RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12549
(336 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 91.2 bits (225), Expect = 1e-22
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 13/188 (6%)
Query: 101 RDPS-LRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHF 158
++P LRK +FI L ++++ F +G++ C V +D S+G+GFV +
Sbjct: 1 KEPEQLRK-----LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 55
Query: 159 ETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDE 218
T E + ++ + + + + +++ ED +
Sbjct: 56 ATVEEVDAAMNARPHKVDGRVVEP---KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 112
Query: 219 KLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKILYVG 276
L++ FE YG I +M GK RGF FV ++ + +K V V+G V
Sbjct: 113 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 171
Query: 277 RAQKKAER 284
+A K E
Sbjct: 172 KALSKQEM 179
Score = 53.9 bits (128), Expect = 2e-09
Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGV---GNVFIKNLDKSIDNKAMYDTFS 132
+ + A++ R+ S R +F+ + + + + D F
Sbjct: 60 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 119
Query: 133 AFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKE 191
+G I ++ D G +G+ FV F+ ++ +K + + +N V K + ++E
Sbjct: 120 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 178
Query: 192 REK 194
Sbjct: 179 MAS 181
Score = 51.9 bits (123), Expect = 1e-08
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 15/131 (11%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITS--YRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
++I + DE L+ FE +GT+T N +SRGFGFV Y + E + A+ A
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 264 NGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLR 323
+ + + ++V + + ++ LR
Sbjct: 69 PH-------------KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 115
Query: 324 KEFTPFGTITS 334
F +G I
Sbjct: 116 DYFEQYGKIEV 126
Score = 36.1 bits (82), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
L++ L DE LR F +GT+T
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCV 37
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 80.9 bits (199), Expect = 6e-20
Identities = 72/90 (80%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
PSLRKSGVGN+FIKNLDKSIDNKA+YDTFSAFG+ILSCKV DE G SKGYGFVHFET+E
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQE 59
Query: 163 AANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
AA ++IEK+NGMLLN + VFVG+F RKER
Sbjct: 60 AAERAIEKMNGMLLNDRKVFVGRFKSRKER 89
Score = 75.1 bits (184), Expect = 7e-18
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
N++IKN + +++ L + F +G I S +V+ ++ S+G+GFV +E+ E AE+A++
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 68
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG ++ + ++VGR + + ER
Sbjct: 69 NGMLLNDRKVFVGRFKSRKER 89
Score = 33.5 bits (76), Expect = 0.006
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 302 RYQGV-NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R GV N+++KNLD SID++ L F+ FG I S K
Sbjct: 4 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 39
Score = 27.3 bits (60), Expect = 0.77
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQR 101
ERA++ MN L R + + +
Sbjct: 60 AAERAIEKMNGMLLNDRKVFVGRFKS 85
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 79.7 bits (196), Expect = 4e-19
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+YI+N E++ ++F YG I RV N ++RG +V YE A+ A
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNACDHL 66
Query: 264 NGKEVDGKILYVGRAQ-KKAERTQELKRRFEMLKIERLNRYQGVN 307
+G V + L V +A + + K++ E +++ L G+N
Sbjct: 67 SGFNVCNRYLVVLYYNANRAFQKMDTKKKEE--QLKLLKEKYGIN 109
Score = 68.1 bits (166), Expect = 5e-15
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
++I+NL I + MYD F +G I + ++G +V +E A + + ++
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIR--VGNTPETRGTAYVVYEDIFDAKNACDHLS 67
Query: 173 GMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYG 228
G + ++ + V + + +K +K + E+LK + E YG
Sbjct: 68 GFNVCNRYLVVLYYNANRAFQKMDTKKKE----------------EQLKLLKEKYG 107
Score = 32.3 bits (73), Expect = 0.020
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKS 108
D + A D ++ + R + +++ + + +K
Sbjct: 58 DAKNACDHLSGFNVCNRYLVVLYYNANRAFQKM 90
Score = 30.0 bits (67), Expect = 0.12
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITS 334
LY++NL I E + F +G I
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQ 36
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 69.6 bits (170), Expect = 1e-15
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM---NNDGKSRGFGFVAYESPEFAEKAV 260
+ + ++N N +++E+F +G + + R+ G RGFGFV + + + A+KA
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 261 QA-WNGKEVDGKILYVGRAQKKAER 284
A + + G+ L + A +
Sbjct: 69 NALCHSTHLYGRRLVLEWADSEVTV 93
Score = 56.5 bits (136), Expect = 5e-11
Identities = 16/90 (17%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD--EQGNSKGYGFVHFETEEA 163
+K + ++N+ + + + + FS FG + + ++ + G +G+GFV F T++
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 164 ANKSIEKV-NGMLLNSKIVFVGKFIPRKER 192
A K+ + + L + + + ++ +
Sbjct: 64 AKKAFNALCHSTHLYGRRLVL-EWADSEVT 92
Score = 31.1 bits (70), Expect = 0.048
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+ V+N+ + +R+ F+ FG + +
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTV 38
Score = 28.7 bits (64), Expect = 0.30
Identities = 6/32 (18%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 76 DTERALDTM-NFDALKGRPIRIMWSQRDPSLR 106
D ++A + + + L GR + + W+ + +++
Sbjct: 63 DAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 69.3 bits (169), Expect = 1e-15
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ N F D L++MF +G I ++ N+ S+GFGFV +E+ A++A +
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 71
Query: 264 NGKEVDGKILYVGRAQKKA 282
+G V+G+ + V A +
Sbjct: 72 HGTVVEGRKIEVNNATARV 90
Score = 55.1 bits (132), Expect = 2e-10
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
KS + + N+ + + F FG IL ++ +E+ SKG+GFV FE A++
Sbjct: 8 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADR 66
Query: 167 SIEKVNGMLLNSKIVFVGKFIPR 189
+ EK++G ++ + + V R
Sbjct: 67 AREKLHGTVVEGRKIEVNNATAR 89
Score = 30.0 bits (67), Expect = 0.085
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITS 334
L+V N+ D LR+ F FG I
Sbjct: 13 RLHVSNIPFRFRDPDLRQMFGQFGKILD 40
Score = 28.5 bits (63), Expect = 0.31
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDP 103
D +RA + ++ ++GR I + +
Sbjct: 63 DADRAREKLHGTVVEGRKIEVNNATARV 90
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 68.8 bits (168), Expect = 1e-15
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQA 262
++Y+ + D + L E F P G I S RV + S G+ +V ++ P AE+A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 263 WNGKEVDGKILYVGRAQK 280
N + GK + + +Q+
Sbjct: 62 MNFDVIKGKPVRIMWSQR 79
Score = 57.6 bits (139), Expect = 1e-11
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVA-QDEQGNSKGYGFVHFETEEAANKSIEK 170
++++ +L + +Y+ FS G ILS +V S GY +V+F+ A ++++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 171 VNGMLLNSKIVFVGK 185
+N ++ K V +
Sbjct: 62 MNFDVIKGKPVRIMW 76
Score = 38.4 bits (89), Expect = 1e-04
Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRD 102
D ERALDTMNFD +KG+P+RIMWSQRD
Sbjct: 54 DAERALDTMNFDVIKGKPVRIMWSQRD 80
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+LYV +L + + L ++F+P G I S
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSI 30
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 67.8 bits (165), Expect = 3e-15
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG---KSRGFGFVAYESPEFAEKAVQA 262
++I N + +++ L + F +G I + D S+G+ F+ + S + ++ A++A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 263 WNGKEVDGKILYVGRAQKKAER 284
NG+ + + + V A KK +
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
Score = 58.6 bits (141), Expect = 7e-12
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN--SKGYGFVHFETEEAANKSIEK 170
+FI NLD ID K +YDTFSAFG IL + SKGY F++F + +A++ +IE
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 171 VNGMLLNSKIVFVGKFIPRKER 192
+NG L ++ + V + +
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
Score = 32.4 bits (73), Expect = 0.012
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTI 332
+++ NLD ID++ L F+ FG I
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVI 25
Score = 28.2 bits (62), Expect = 0.35
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPS 104
++ A++ MN L RPI + ++ + S
Sbjct: 53 ASDAAIEAMNGQYLCNRPITVSYAFKKDS 81
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 67.7 bits (165), Expect = 3e-15
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQ 261
TN+ + +D D +L +F G I + R+M G S G+ FV + S +++A++
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG V K L V A+
Sbjct: 63 VLNGITVRNKRLKVSYAR 80
Score = 56.9 bits (137), Expect = 2e-11
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSC-KVAQDEQGNSKGYGFVHFETEEAANKSIEK 170
N+ + L + + ++ +Y F A G I +C + + G S GY FV F +E + ++I+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 171 VNGMLLNSKIVFV 183
+NG+ + +K + V
Sbjct: 64 LNGITVRNKRLKV 76
Score = 36.9 bits (85), Expect = 3e-04
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSA 335
NL V L + D L F G I +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTC 32
Score = 30.7 bits (69), Expect = 0.047
Identities = 4/25 (16%), Positives = 17/25 (68%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ 100
D++RA+ +N ++ + +++ +++
Sbjct: 56 DSQRAIKVLNGITVRNKRLKVSYAR 80
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 68.1 bits (166), Expect = 5e-15
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQ 261
++V ++ ++F +E EM E YG + V N G +V + E AEKAV
Sbjct: 27 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 86
Query: 262 AWNGKEVDGKILYV 275
N + +G+ ++
Sbjct: 87 DLNNRWFNGQPIHA 100
Score = 53.5 bits (128), Expect = 6e-10
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANK 166
+S V +V ++ + + +G + V + + G +V F EE A K
Sbjct: 24 RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEK 83
Query: 167 SIEKVNGMLLNSKIVFVGKFIP 188
++ +N N + + + P
Sbjct: 84 AVIDLNNRWFNGQPIHA-ELSP 104
Score = 30.0 bits (67), Expect = 0.11
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++ ++ D +E + +G +
Sbjct: 29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMN 58
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 67.4 bits (164), Expect = 5e-15
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 207 YIKNFGEDFNDEKLKEMFEPYGTITS-----YRVMNNDGKSRGFGFVAYESPEFAEKAVQ 261
+IKN +E LK +F G I S + S GFGFV Y+ PE A+KA++
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 262 AWNGKEVDGKILYVGRAQKK 281
G VDG L V +++
Sbjct: 62 QLQGHTVDGHKLEVRISERA 81
Score = 53.1 bits (127), Expect = 6e-10
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 114 FIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ----GNSKGYGFVHFETEEAANKSIE 169
FIKNL+ S + + FS G+I SC +++ + S G+GFV ++ E A K+++
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 170 KVNGMLLNSKIVFVGKFIPRKER 192
++ G ++ + V + R +
Sbjct: 62 QLQGHTVDGHKLEV-RISERATK 83
Score = 34.6 bits (79), Expect = 0.002
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITS 334
L++KNL+ S +E L+ F+ G I S
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKS 27
Score = 31.5 bits (71), Expect = 0.021
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDP 103
++AL + + G + + S+R
Sbjct: 55 QAQKALKQLQGHTVDGHKLEVRISERAT 82
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 67.6 bits (165), Expect = 6e-15
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 204 TNVYIKNFG-EDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQA 262
+ V+I N ++ +F YG I V GF FV Y + A AV
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK------GFAFVQYVNERNARAAVAG 69
Query: 263 WNGKEVDGKILYVGRAQKKAER 284
+G+ + G++L + A +
Sbjct: 70 EDGRMIAGQVLDINLAAEPKVN 91
Score = 58.0 bits (140), Expect = 1e-11
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 99 SQRDPSLRKSGVGNVFIKNLD-KSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVH 157
+ DP S VFI NL+ + + FS +G I+ C V + G+ FV
Sbjct: 7 GKTDPRSMNS---RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK-------GFAFVQ 56
Query: 158 FETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREK 194
+ E A ++ +G ++ +++ + K
Sbjct: 57 YVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRS 93
Score = 33.3 bits (76), Expect = 0.007
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 302 RYQGVNLYVKNLD-DSIDDERLRKEFTPFGTITSAK 336
R +++ NL+ + + F+ +G I
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCS 47
Score = 31.8 bits (72), Expect = 0.026
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVGN 112
+ A+ + + G+ + I + +P + +SG +
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLA-AEPKVNRSGPSS 97
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 66.2 bits (161), Expect = 2e-14
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 187 IPRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRG 244
+P + +++E + F ++I + +E L+ +E +G +T VM + +SRG
Sbjct: 8 VPLERKKRE----KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284
FGFV + S + A+ A +DG+++ RA + E
Sbjct: 64 FGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES 102
Score = 53.5 bits (128), Expect = 6e-10
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEK 170
+FI L +++ + + +G + C V +D S+G+GFV F + + ++
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 171 VNGMLLNSKIVFVGKFIPRKER 192
++ ++V + + R+E
Sbjct: 82 -RPHSIDGRVVEPKRAVAREES 102
Score = 30.4 bits (68), Expect = 0.083
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 288 LKRRFEMLKIERLNRY--QGVNLYVKNLDDSIDDERLRKEFTPFG 330
+++ E + +ER R Q L++ L +E LR + +G
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWG 45
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 65.4 bits (159), Expect = 2e-14
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 197 GEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT--SYRVMNNDGKSRGFGFVAYESPE 254
GE K TN+Y+ N D++L +F YG+I + G+ RG FV Y E
Sbjct: 1 GESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 59
Query: 255 FAEKAVQAWNGKEVDG--KILYVGRA 278
A++A+ A N +G + L V A
Sbjct: 60 EAQEAISALNNVIPEGGSQPLSVRLA 85
Score = 56.1 bits (135), Expect = 5e-11
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
N+++ NL ++I + + F +GSI+ + +D G +G FV + E A ++I
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 171 VNGMLLN 177
+N ++
Sbjct: 68 LNNVIPE 74
Score = 36.1 bits (83), Expect = 6e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTIT 333
NLYV NL +I D++L F +G+I
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIV 34
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 65.4 bits (159), Expect = 3e-14
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGF 245
P ER ++ VY+ E ++ L E+F G + + + G+ +G+
Sbjct: 2 PISERNQD--------ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY 53
Query: 246 GFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAE 283
GFV + S E A+ A++ + ++ GK + V +A +
Sbjct: 54 GFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 91
Score = 54.3 bits (130), Expect = 3e-10
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
V++ LD+ + +++ F G +++ + +D G +GYGFV F +EE A+ +I+
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 70
Query: 171 VNGMLLNSKIVFVGKFIPRKE 191
++ + L K + V K +
Sbjct: 71 MDMIKLYGKPIRVNKASAHNK 91
Score = 33.5 bits (76), Expect = 0.006
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 301 NRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
R Q +YV LD+ + + L + F G + +
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTH 40
Score = 30.0 bits (67), Expect = 0.11
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ-RDPSL 105
D + A+ M+ L G+PIR+ + + +L
Sbjct: 63 DADYAIKIMDMIKLYGKPIRVNKASAHNKNL 93
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 65.5 bits (159), Expect = 4e-14
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQ 261
N++I + ++F D+ L +MF P+G + S +V + S+ FGFV+Y++P A+ A+Q
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
Query: 262 AWNGKEVDGKILYVGRAQKKAER 284
+ NG ++ K L V + K +
Sbjct: 79 SMNGFQIGMKRLKVQLKRSKNDS 101
Score = 51.6 bits (123), Expect = 3e-09
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEK 170
N+FI +L + ++ + F FG+++S KV D+Q SK +GFV ++ +A +I+
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 79
Query: 171 VNGMLLNSKIVFVGKFIPRKER 192
+NG + K + V + +
Sbjct: 80 MNGFQIGMKRLKVQLKRSKNDS 101
Score = 30.4 bits (68), Expect = 0.088
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+G NL++ +L D+ L + F PFG + S
Sbjct: 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 47
Score = 30.0 bits (67), Expect = 0.13
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQR 101
+ A+ +MN + + +++ +
Sbjct: 72 SAQAAIQSMNGFQIGMKRLKVQLKRS 97
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 64.3 bits (156), Expect = 8e-14
Identities = 17/81 (20%), Positives = 36/81 (44%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+Y+ N D + + ++F G S +++ + + FV + A A+ A
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NG+++ GK + V A + +
Sbjct: 69 NGRKILGKEVKVNWATTPSSQ 89
Score = 51.2 bits (122), Expect = 4e-09
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL + + + FS G SCK+ + ++ Y FV F A ++ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 173 GMLLNSKIVFVGKFIPRKERE 193
G + K V V ++
Sbjct: 70 GRKILGKEVKVNWATTPSSQK 90
Score = 34.2 bits (78), Expect = 0.003
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRK 107
D AL MN + G+ +++ W+ PS +K
Sbjct: 60 DAAAALAAMNGRKILGKEVKVNWATT-PSSQK 90
Score = 28.5 bits (63), Expect = 0.38
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSA 335
LYV NL + + + + F+ G S
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSC 38
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 63.5 bits (154), Expect = 1e-13
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 206 VYIKNFGEDFNDEKLKEM----FEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQ 261
+YI N E ++LK+ F +G I V + K RG FV ++ A A++
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALR 64
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQEL 288
+ G K + + A+ ++ ++
Sbjct: 65 SMQGFPFYDKPMRIQYAKTDSDIIAKM 91
Score = 50.8 bits (121), Expect = 4e-09
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 113 VFIKNLDKSIDN----KAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSI 168
++I NL++ I K+++ FS FG IL V +G FV F+ +A ++
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--SRSLKMRGQAFVIFKEVSSATNAL 63
Query: 169 EKVNGMLLNSKIVFVGKFIPRKEREKEL 196
+ G K + + + ++
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDIIAKM 91
Score = 30.4 bits (68), Expect = 0.061
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRD 102
AL +M +P+RI +++ D
Sbjct: 58 SATNALRSMQGFPFYDKPMRIQYAKTD 84
Score = 25.8 bits (56), Expect = 3.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 308 LYVKNLDDSIDDERLRKEFTPF 329
+Y+ NL++ I + L+K
Sbjct: 6 IYINNLNEKIKKDELKKSLHAI 27
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 63.2 bits (153), Expect = 2e-13
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQ 261
TN+ + ++ E+ + +F G I S +++ G+S G+GFV Y P+ AEKA+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 262 AWNGKEVDGKILYVGRAQ 279
NG + K + V A+
Sbjct: 63 TLNGLRLQTKTIKVSYAR 80
Score = 50.9 bits (121), Expect = 3e-09
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
N+ + L +++ + F + G I SCK+ +D G S GYGFV++ + A K+I
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 171 VNGMLLNSKIVFVGKFIP 188
+NG+ L +K + V P
Sbjct: 64 LNGLRLQTKTIKVSYARP 81
Score = 33.2 bits (75), Expect = 0.007
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFG 330
NL V L ++ E R F G
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIG 27
Score = 30.8 bits (69), Expect = 0.037
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPS 104
D E+A++T+N L+ + I++ +++ PS
Sbjct: 56 DAEKAINTLNGLRLQTKTIKVSYAR--PS 82
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 63.5 bits (154), Expect = 2e-13
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
VY D+ +++ F P+G I RV +G+ FV + + E A A+ +
Sbjct: 19 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF----PEKGYSFVRFSTHESAAHAIVSV 74
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
NG ++G ++ ++ + T
Sbjct: 75 NGTTIEGHVVKCYWGKESPDMT 96
Score = 49.6 bits (118), Expect = 1e-08
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 97 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFV 156
+ +Q P V+ + + ++ M TFS FG I+ +V ++ Y FV
Sbjct: 10 VVNQSSPKNCT-----VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----YSFV 59
Query: 157 HFETEEAANKSIEKVNGMLLNSKIVFVG 184
F T E+A +I VNG + +V
Sbjct: 60 RFSTHESAAHAIVSVNGTTIEGHVVKCY 87
Score = 37.6 bits (87), Expect = 2e-04
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSL 105
A+ ++N ++G ++ W + P +
Sbjct: 66 SAAHAIVSVNGTTIEGHVVKCYWGKESPDM 95
Score = 33.8 bits (77), Expect = 0.005
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ +Y + + D+ +R+ F+PFG I +
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR 49
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 62.8 bits (152), Expect = 2e-13
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQ 261
N+Y+ + ++L+++F YG I + R++ G SRG GF+ ++ AE+A++
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 262 AWNGKEVDGK 271
NG++ G
Sbjct: 67 GLNGQKPSGA 76
Score = 53.1 bits (127), Expect = 7e-10
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
N+++ L K++ K + FS +G I++ ++ D G S+G GF+ F+ A ++I+
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 171 VNGMLLN 177
+NG +
Sbjct: 68 LNGQKPS 74
Score = 35.0 bits (80), Expect = 0.001
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITS 334
NLYV L ++ + L + F+ +G I +
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIIT 35
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 62.7 bits (152), Expect = 3e-13
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM--NNDGKSRGF 245
P +E L + + V+ L++ F G + R++ N +S+G
Sbjct: 3 PVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 62
Query: 246 GFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284
+V + + A+ G+ + G + V +Q + R
Sbjct: 63 AYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNR 100
Score = 54.7 bits (131), Expect = 2e-10
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 93 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SK 151
P+R P R + VF L I + + D FSA G + ++ D SK
Sbjct: 3 PVREPVDNLSPEERDAR--TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60
Query: 152 GYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
G +V F ++ +I G L + V K R
Sbjct: 61 GIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQASQAEKNR 100
Score = 30.4 bits (68), Expect = 0.099
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++ L I L F+ G + +
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVR 49
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 62.0 bits (150), Expect = 5e-13
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSY----RVMNNDGKSRGFGFVAYESPEFAEKA 259
++I + E++ E + K+RGF FV YES A A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 260 VQAWNGK--EVDGKILYVGRAQKKAERTQELKRR 291
+ ++ G + V A+ + + +++
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET 95
Score = 50.8 bits (121), Expect = 5e-09
Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVA---QDEQGNSKGYGFVHFETEEAANKSIE 169
+FI + K + + + + + + ++ ++G+ FV +E+ AA +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 170 KVNG--MLLNSKIVFVGKFIPRKEREKELGEK 199
K+ + L + V P + ++++ E
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET 95
Score = 29.3 bits (65), Expect = 0.20
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTI 332
L++ + E + +E
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEG 28
Score = 25.8 bits (56), Expect = 3.6
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 76 DTERALDTMNFD--ALKGRPIRIMWSQRDP 103
A + L G I + W++ +
Sbjct: 57 AAAMARRKLMPGRIQLWGHQIAVDWAEPEI 86
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 62.0 bits (150), Expect = 5e-13
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQAW 263
++I ND+++KE+ +G + ++ ++ + G S+G+ F Y ++A+
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 264 NGKEVDGKILYVGRAQKKAE 283
NG ++ K L V RA A+
Sbjct: 64 NGMQLGDKKLLVQRASVGAK 83
Score = 50.4 bits (120), Expect = 5e-09
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEKV 171
+FI L +++ + + ++FG + + + +D SKGY F + +++I +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 172 NGMLLNSKIVFVGKFIPRKE 191
NGM L K + V + +
Sbjct: 64 NGMQLGDKKLLVQRASVGAK 83
Score = 27.7 bits (61), Expect = 0.53
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDP 103
T++A+ +N L + + + +
Sbjct: 55 VTDQAIAGLNGMQLGDKKLLVQRASVGA 82
Score = 26.1 bits (57), Expect = 2.1
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
L++ L + ++D+++++ T FG + +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFN 32
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 62.0 bits (150), Expect = 5e-13
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQAW 263
+Y+ E+ +D+ L F P+G IT ++ + RGF FV +E E A A+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 264 NGKEVDGKILYVGRAQKKAER 284
N E+ G+ + V A+ +
Sbjct: 68 NESELFGRTIRVNLAKPMRIK 88
Score = 58.5 bits (141), Expect = 9e-12
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEKV 171
+++ L + +D+K ++ F FG I ++ D + +G+ FV FE E A +I+ +
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 172 NGMLLNSKIVFVGKFIPRKERE 193
N L + + V P + +E
Sbjct: 68 NESELFGRTIRVNLAKPMRIKE 89
Score = 31.2 bits (70), Expect = 0.042
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITS 334
LYV L + +DD+ L F PFG IT
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITD 34
Score = 29.6 bits (66), Expect = 0.12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ 100
D A+D MN L GR IR+ ++
Sbjct: 59 DAAAAIDNMNESELFGRTIRVNLAK 83
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 62.0 bits (150), Expect = 6e-13
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQ 261
++++N ++E L+++F YG ++ K +GF FV + PE A KA
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQ 286
+G+ G++L+V + K E +Q
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQ 93
Score = 57.0 bits (137), Expect = 3e-11
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANK 166
SG G +F++NL + + + FSA+G + D KG+ FV F E A K
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKEREK 194
+ +V+G + +++ V +KE +
Sbjct: 66 AYAEVDGQVFQGRMLHVLPSTIKKEASQ 93
Score = 34.7 bits (79), Expect = 0.003
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSG 109
+A ++ +GR + ++ S +SG
Sbjct: 62 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQSG 95
Score = 28.9 bits (64), Expect = 0.29
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
L+V+NL + +E L K F+ +G ++
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELH 39
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.1 bits (148), Expect = 1e-12
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
+Y+ N +E++ E+F G I + + + GF FV Y S AE A++
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQ 286
NG +D +I+ E Q
Sbjct: 68 YINGTRLDDRIIRTDWDAGFKEGRQ 92
Score = 52.3 bits (125), Expect = 1e-09
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSIEKV 171
+++ NL + +Y+ FS G I + D+ + G+ FV + + A ++ +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 172 NGMLLNSKIVFVGKFIPRKEREK 194
NG L+ +I+ KE +
Sbjct: 70 NGTRLDDRIIRTDWDAGFKEGRQ 92
Score = 31.5 bits (71), Expect = 0.034
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRK 107
D E A+ +N L R IR W R+
Sbjct: 61 DAENAMRYINGTRLDDRIIRTDWDAGFKEGRQ 92
Score = 30.3 bits (68), Expect = 0.074
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 298 ERLNRYQGVNLYVKNLDDSIDDERLRKEFTPFG 330
E+L + + LYV NL +E++ + F+ G
Sbjct: 1 EKLLK-KSCTLYVGNLSFYTTEEQIYELFSKSG 32
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.9 bits (147), Expect = 1e-12
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKS--RGFGFVAYESPEFAEKAVQAW 263
+++ D N++ L+++F YG I+ V+ + RGFGFV +E+ + A+ A+ A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 264 NGKEVDGKILYVGRAQKKAER 284
NGK VDG+ + V +A K ++
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
Score = 49.4 bits (117), Expect = 2e-08
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIE 169
G +F+ L + +++ FS +G I V +D + S+G+GFV FE + A ++
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 170 KVNGMLLNSKIVFVGKFIPRKER 192
+NG ++ + + V + +
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSDN 88
Score = 27.8 bits (61), Expect = 0.58
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKS 108
+ A+ MN ++ GR IR+ + + +S
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD-NRS 90
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 60.4 bits (146), Expect = 1e-12
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I E L+E F +G + VM +SRGFGFV + +K +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ- 61
Query: 264 NGKEVDGKILYVGRA 278
+ E+D K + A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 52.3 bits (125), Expect = 9e-10
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKV 171
+FI L + + + F FG + C V +D S+G+GFV F + +K + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ- 61
Query: 172 NGMLLNSKIVFV 183
+ L+SK +
Sbjct: 62 SRHELDSKTIDP 73
Score = 31.1 bits (70), Expect = 0.027
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+++ L E LR+ F FG +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECL 31
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 60.4 bits (146), Expect = 2e-12
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+ +++ N D +E+++++FE YG K +GFGF+ E+ AE A
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYG----KAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 64
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
+ + GK L V A A T
Sbjct: 65 DNMPLRGKQLRVRFACHSASLT 86
Score = 46.9 bits (111), Expect = 1e-07
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167
+ +F+ NL I + M F +G + +D+ +GF+ ET A +
Sbjct: 6 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG-----FGFIRLETRTLAEIA 60
Query: 168 IEKVNGMLLNSKIVFV 183
+++ M L K + V
Sbjct: 61 KVELDNMPLRGKQLRV 76
Score = 31.5 bits (71), Expect = 0.025
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSL 105
E A ++ L+G+ +R+ ++ SL
Sbjct: 56 LAEIAKVELDNMPLRGKQLRVRFACHSASL 85
Score = 30.7 bits (69), Expect = 0.047
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFG 330
Q L+V NL I +E +RK F +G
Sbjct: 7 QRSRLFVGNLPPDITEEEMRKLFEKYG 33
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 60.6 bits (146), Expect = 2e-12
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND----------GKSRGFGFVAYESP 253
+ +Y++ + + L + F+ G + + GK +G V+YE P
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 68
Query: 254 EFAEKAVQAWNGKEVDGKILYVGRAQKKAER 284
A+ AV+ ++GK+ G L V A+KK
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 99
Score = 46.3 bits (109), Expect = 2e-07
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD---------EQGNSKGYGFVHFETEE 162
++++ L+ S+ + D F G + K E G KG V +E
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 69
Query: 163 AANKSIEKVNGMLLNSKIVFVGKFIPRKER 192
A ++E +G + V +
Sbjct: 70 TAKAAVEWFDGKDFQGSKLKVSLARKKPPM 99
Score = 31.7 bits (71), Expect = 0.027
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+YV+ L+DS+ + L F G + K
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNK 39
Score = 30.9 bits (69), Expect = 0.064
Identities = 3/28 (10%), Positives = 14/28 (50%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDP 103
+ A++ + +G +++ +++ P
Sbjct: 70 TAKAAVEWFDGKDFQGSKLKVSLARKKP 97
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 59.7 bits (144), Expect = 2e-12
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I + DE L+ FE +GT+T VM N +SRGFGFV Y + E + A+ A
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA- 67
Query: 264 NGKEVDGKILYVGRA 278
+VDG+++ RA
Sbjct: 68 RPHKVDGRVVEPKRA 82
Score = 47.7 bits (113), Expect = 5e-08
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKV 171
+FI L ++++ F +G++ C V +D S+G+GFV + T E + ++
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA- 67
Query: 172 NGMLLNSKIVFVGK 185
++ ++V +
Sbjct: 68 RPHKVDGRVVEPKR 81
Score = 28.1 bits (62), Expect = 0.37
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITS 334
L++ L DE LR F +GT+T
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTD 35
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.1 bits (145), Expect = 2e-12
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND-------GKSRGFGFVAYESPEFAEK 258
+Y+ N +E + + F + + + + F F+ + S + +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 259 AVQAWNGKEVDGKILYVGRA 278
A+ ++G G+ L + R
Sbjct: 64 AMA-FDGIIFQGQSLKIRRP 82
Score = 50.9 bits (121), Expect = 4e-09
Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVA------QDEQGNSKGYGFVHFETEEAANK 166
+++ N+ I +AM D F+A + A + K + F+ F + + +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 167 SIEKVNGMLLNSKIVFVGKFIPRKER 192
++ +G++ + + + + P +
Sbjct: 64 AMAF-DGIIFQGQSLKIRR--PHDYQ 86
Score = 32.4 bits (73), Expect = 0.013
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
LYV N+ I +E + F +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLT 32
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 60.2 bits (145), Expect = 3e-12
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 201 KLF-TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKA 259
L F E K + +F Y T+++ + + + +P A A
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS----FKRVRINFSNPLSAADA 62
Query: 260 VQAWNGKEVDGKILYVGRAQKKAERTQELK 289
+ E GK + + AQ + L
Sbjct: 63 RLRLHKTEFLGKEMKLYFAQTLHIGSSHLA 92
Score = 51.7 bits (123), Expect = 3e-09
Identities = 7/94 (7%), Positives = 23/94 (24%), Gaps = 10/94 (10%)
Query: 108 SGVGNVFIKNLDKSI-----DNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEE 162
SG + + + F + + + + ++F
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPL 57
Query: 163 AANKSIEKVNGMLLNSKIVFVGKFIPRKEREKEL 196
+A + +++ K + + L
Sbjct: 58 SAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHL 91
Score = 27.1 bits (59), Expect = 1.1
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPS 104
A ++ G+ +++ ++Q
Sbjct: 58 SAADARLRLHKTEFLGKEMKLYFAQTLHI 86
Score = 25.5 bits (55), Expect = 5.2
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 5/35 (14%)
Query: 307 NLYVKNLDDSIDDER-----LRKEFTPFGTITSAK 336
L +D + E F + T+ +
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQ 41
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 59.7 bits (144), Expect = 3e-12
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
+YI N + L+++F + +V+ G+ FV Y +A +A++ +G
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLSG 59
Query: 266 K-EVDGKILYVGRAQKKAERT 285
K E+ GKI+ V + K R+
Sbjct: 60 KVELHGKIMEVDYSVSKKLRS 80
Score = 52.4 bits (125), Expect = 1e-09
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
++I NL ++ + F L+ +V GY FV + + A ++IE ++
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQV-----LLKSGYAFVDYPDQNWAIRAIETLS 58
Query: 173 GML-LNSKIVFVGKFIPRKER 192
G + L+ KI+ V + +K R
Sbjct: 59 GKVELHGKIMEVDYSVSKKLR 79
Score = 28.9 bits (64), Expect = 0.19
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITS 334
LY+ NL ++ + LR+ F +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLA 30
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 59.2 bits (143), Expect = 3e-12
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWN 264
+ + N +D ++E+F +GT+ V + G+S G V +E A KA++ +N
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 265 GKEVDGKILYVGRAQ 279
G +DG+ + +
Sbjct: 63 GVPLDGRPMNIQLVT 77
Score = 58.4 bits (141), Expect = 6e-12
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 111 GNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEK 170
G + + NLD + + + + F+ FG++ V D G S G VHFE + A K++++
Sbjct: 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 60
Query: 171 VNGMLLNSKIVFV 183
NG+ L+ + + +
Sbjct: 61 YNGVPLDGRPMNI 73
Score = 32.6 bits (74), Expect = 0.010
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSA 335
L V NLD + D +++ F FGT+ A
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKA 30
Score = 25.7 bits (56), Expect = 2.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ 100
D +A+ N L GRP+ I
Sbjct: 53 DALKAMKQYNGVPLDGRPMNIQLVT 77
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 59.7 bits (144), Expect = 3e-12
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+ V++ D +++L+E F YG + + R F FV + + A+
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF---RAFAFVTFADDQIAQSLCG-- 60
Query: 264 NGKEVDGKILYVGRAQKKAERTQ 286
+ G +++ A+ K
Sbjct: 61 EDLIIKGISVHISNAEPKHNSNS 83
Score = 52.7 bits (126), Expect = 8e-10
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167
SG VF+ + + + FS +G ++ + + + + FV F ++ A
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR----AFAFVTFADDQIAQSL 58
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKEREK 194
+++ V + P+
Sbjct: 59 CG--EDLIIKGISVHISNAEPKHNSNS 83
Score = 30.0 bits (67), Expect = 0.10
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
++V + ++ LR+ F+ +G +
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVF 36
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.9 bits (142), Expect = 5e-12
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITS--YRVMNNDGKSRGF 245
P + + + + N ED + L+E+F P+G+I+ G+S+GF
Sbjct: 1 PNRRADDN--------ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 52
Query: 246 GFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKK 281
F+++ E A +A+ +G D IL V A+
Sbjct: 53 AFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 88
Score = 52.4 bits (125), Expect = 1e-09
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 103 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETE 161
P+ R + + NL + + + F FGSI +A+D+ G SKG+ F+ F
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 162 EAANKSIEKVNGMLLNSKIVFVGKFIPR 189
E A ++I V+G + I+ V P
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWAKPS 88
Score = 30.0 bits (67), Expect = 0.098
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ 100
D RA+ ++ + + W++
Sbjct: 62 DAARAIAGVSGFGYDHLILNVEWAK 86
Score = 29.6 bits (66), Expect = 0.15
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPF 329
+ V NL + + L++ F PF
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPF 32
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 58.9 bits (142), Expect = 6e-12
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
+Y++N ++E +++ F RV K R + FV + + E A +A++A NG
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV----KKIRDYAFVHFSNREDAVEAMKALNG 66
Query: 266 KEVDGKILYVGRAQKKAERT 285
K +DG + V A+ + +
Sbjct: 67 KVLDGSPIEVTLAKPVDKDS 86
Score = 50.8 bits (121), Expect = 4e-09
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167
S V ++++NL S + + F+ +V + Y FVHF E A ++
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNREDAVEA 60
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKER 192
++ +NG +L+ + V P +
Sbjct: 61 MKALNGKVLDGSPIEVTLAKPVDKD 85
Score = 28.5 bits (63), Expect = 0.28
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ 100
D A+ +N L G PI + ++
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTLAK 80
Score = 25.8 bits (56), Expect = 2.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSAK 336
LYV+NL S +E + KEF +
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVER 39
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 59.4 bits (143), Expect = 6e-12
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESP-EFAEKAVQA 262
+ + + E L +F +G I + G + ++ + A +
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG----AKEGIILFKEKAKEALGKAKD 67
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQG 305
N + + V + E +E ++ + E LN+++
Sbjct: 68 ANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKS 110
Score = 45.6 bits (107), Expect = 6e-07
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 106 RKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETE-EAA 164
K G F +LD + ++ FS G I + G + F+ + + A
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----AKEGIILFKEKAKEA 61
Query: 165 NKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEK 199
+ N L + V + E EKE +K
Sbjct: 62 LGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKK 96
Score = 28.2 bits (62), Expect = 0.56
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 306 VNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
+ + +LDD E L F+ G I
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWI 41
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 58.9 bits (142), Expect = 7e-12
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+Y+ N D + ++++F YG I + N F FV +E P AE AV
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGR 73
Query: 264 NGKEVDGKILYVGRAQKK 281
+G + DG L V +
Sbjct: 74 DGYDYDGYRLRVEFPRSG 91
Score = 45.8 bits (108), Expect = 3e-07
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+++ NL I K + D F +G+I + + FV FE A ++ +
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG--GPPFAFVEFEDPRDAEDAVYGRD 74
Query: 173 GMLLNSKIVFV 183
G + + V
Sbjct: 75 GYDYDGYRLRV 85
Score = 30.8 bits (69), Expect = 0.058
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQRDPSLRKSG 109
E A+ + G +R+ + + R +G
Sbjct: 67 EDAVYGRDGYDYDGYRLRVEFPRSG---RGTG 95
Score = 27.7 bits (61), Expect = 0.68
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTIT 333
+YV NL I + + F +G I
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIR 42
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.8 bits (142), Expect = 7e-12
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNN--DGKSRGFGFVAYESPEFAEKAVQ 261
+++ + ++ LKE F +G + +V + G S+GFGFV + E K +
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 262 AWNGKEVDGKILYVGRAQKKAER 284
+DG+ K +
Sbjct: 69 --QRHMIDGRWCDCKLPNSKQSQ 89
Score = 54.6 bits (131), Expect = 2e-10
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
++ + L + + + FS FG +L +V +D + G+SKG+GFV F E K + +
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 69
Query: 171 VNGMLLNSKIVFVGKFIPRKERE 193
+ ++ + ++ ++
Sbjct: 70 RHM--IDGRWCDCKLPNSKQSQD 90
Score = 29.2 bits (65), Expect = 0.21
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+L V L ++ L++ F+ FG + +
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ 39
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 58.9 bits (142), Expect = 7e-12
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAE 257
+K + + KN + +++LKE+FE R+++ DGKS+G ++ ++S AE
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDA---LEIRLVSQDGKSKGIAYIEFKSEADAE 67
Query: 258 KAVQAWNGKEVDGKILYVGRAQKKAER 284
K ++ G E+DG+ + + +K
Sbjct: 68 KNLEEKQGAEIDGRSVSLYYTGEKGGT 94
Score = 46.2 bits (109), Expect = 2e-07
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+ KNL +I + + F I + G SKG ++ F++E A K++E+
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEK 73
Query: 172 NGMLLNSKIVFVGKFIPRKER 192
G ++ + V + +
Sbjct: 74 QGAEIDGRSVSLYYTGEKGGT 94
Score = 31.9 bits (72), Expect = 0.019
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLR 106
D E+ L+ + GR + + ++ R
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
Score = 28.1 bits (62), Expect = 0.57
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPF 329
L KNL +I ++ L++ F
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDA 40
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 58.6 bits (141), Expect = 1e-11
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQA 262
+V++ N + +E+LK++F G + S+R++ + +G+GF Y+ E A A++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 263 WNGKEVDGKILYVGRAQKKAERTQELKRRF 292
NG+E G+ L V A + + +ELK
Sbjct: 70 LNGREFSGRALRVDNAASEKNK-EELKSLG 98
Score = 55.1 bits (132), Expect = 2e-10
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 102 DPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFET 160
DP++ +S + +VF+ N+ + + D FS G ++S ++ D + KGYGF ++
Sbjct: 1 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 59
Query: 161 EEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREK 194
+E A ++ +NG + + + V K +E+
Sbjct: 60 QETALSAMRNLNGREFSGRALRVDNAASEKNKEE 93
Score = 31.6 bits (71), Expect = 0.033
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPS---LRKSGVG 111
A+ +N GR +R+ + + + L+ G G
Sbjct: 62 TALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 100
Score = 25.1 bits (54), Expect = 5.4
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPF 329
+++V N+ +E+L+ F+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEV 32
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 56.5 bits (136), Expect = 3e-11
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMN--NDGKSRGFGFVAYESPEFAEKAVQAW 263
++I D + LK+ F +G + + G+SRGFGFV ++ E +K +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 60
Query: 264 NGKEVDGKILYVGRA 278
+++GK++ RA
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 48.8 bits (116), Expect = 1e-08
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEKV 171
+FI L K + D FS FG ++ C + D S+G+GFV F+ E+ +K +++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 60
Query: 172 NGMLLNSKIVFVGK 185
LN K++ +
Sbjct: 61 KEHKLNGKVIDPKR 74
Score = 28.0 bits (62), Expect = 0.41
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITS 334
+++ L + L+ F+ FG +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVD 28
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 56.6 bits (136), Expect = 3e-11
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQ 261
+ + + L+E+F YG I ++ + SRGF FV +E+ + A++A +
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 262 AWNGKEVDGKILYV 275
NG E+DG+ + V
Sbjct: 70 RANGMELDGRRIRV 83
Score = 50.5 bits (120), Expect = 4e-09
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEK 170
+ + L + + + FS +G I + D+Q S+G+ FV+FE + A ++ E+
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 171 VNGMLLNSKIVFV 183
NGM L+ + + V
Sbjct: 71 ANGMELDGRRIRV 83
Score = 32.7 bits (74), Expect = 0.009
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 299 RLNRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
R N L V L + LR+ F+ +G I
Sbjct: 3 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD 38
Score = 26.2 bits (57), Expect = 1.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 76 DTERALDTMNFDALKGRPIRI 96
D + A + N L GR IR+
Sbjct: 63 DAKEAKERANGMELDGRRIRV 83
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 57.1 bits (137), Expect = 3e-11
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 203 FTNVYIKNFGEDFNDEKLKEMFEPYGTIT--SYRVMNNDGKSRGFGFVAYESPEFAEKAV 260
FT +++ D L++ FE +G I GKSRG+GFV AE+A
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 261 QAWNGKEVDGKILYVGRAQKKA 282
+ N +DG+ V A A
Sbjct: 70 KDPNP-IIDGRKANVNLAYLGA 90
Score = 49.0 bits (116), Expect = 3e-08
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 99 SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVH 157
SQ+D + K +F+ L + ++ F FG I V D + G S+GYGFV
Sbjct: 4 SQKDTTFTK-----IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 58
Query: 158 FETEEAANKSIEKVNGMLLNSKI---VFVGKFIPRKER 192
AA ++ + N ++ K + PR +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQ 96
Score = 27.4 bits (60), Expect = 0.89
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSGVG 111
ERA N + GR + + R G
Sbjct: 64 AAERACKDPNPI-IDGRKANVNLAYLGAKPRSLQTG 98
Score = 25.9 bits (56), Expect = 3.8
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 307 NLYVKNLDDSIDDERLRKEF 326
++V L D LRK F
Sbjct: 12 KIFVGGLPYHTTDASLRKYF 31
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 56.3 bits (135), Expect = 4e-11
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTIT--SYRVMNNDGKSRGFGFVAYESPEFAEKAVQ 261
+++ + E+ +++++E F YG I + G S+G+ V YE+ + A A +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 262 AWNGKEVDGKILYVGRAQKK 281
A NG E+ G+ + V K
Sbjct: 68 ALNGAEIMGQTIQVDWCFVK 87
Score = 45.5 bits (107), Expect = 4e-07
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEK 170
+F+ ++ + + + F +G I + + D + SKGY V +ET + A + E
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 171 VNGMLLNSKIVFVGKFIPR 189
+NG + + + V +
Sbjct: 69 LNGAEIMGQTIQVDWCFVK 87
Score = 32.0 bits (72), Expect = 0.017
Identities = 5/27 (18%), Positives = 17/27 (62%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFG 330
+G L+V ++ + ++ ++++F +G
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYG 32
Score = 30.1 bits (67), Expect = 0.076
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 76 DTERALDTMNFDALKGRPIRIMWS 99
A + +N + G+ I++ W
Sbjct: 61 QALAAKEALNGAEIMGQTIQVDWC 84
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 55.8 bits (134), Expect = 1e-10
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+ ++N + L ++F +GT+ ++ + Y P A+ A +
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSL 65
Query: 264 NGKEV--DGKILYVGRAQKK 281
+G+ + L + ++
Sbjct: 66 DGQNIYNACCTLRIDFSKLT 85
Score = 55.0 bits (132), Expect = 2e-10
Identities = 15/105 (14%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167
S V + ++NL + ++ FS FG++L N++ + + +A +
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHA 61
Query: 168 IEKVNGMLL--NSKIVFVGKFIPRKEREKELGEKAKLFTNVYIKN 210
++G + + + K +K++ +T + +
Sbjct: 62 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPS 106
Score = 30.0 bits (67), Expect = 0.14
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ V+NL + + L + F+ FGT+
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKII 38
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 56.5 bits (135), Expect = 1e-10
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGF--GFVAYESPEFAEKAVQ 261
N+ + ++ +L+++FE YG I S +++ + + GFV ++S A++A+
Sbjct: 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIA 102
Query: 262 AWNGKEVDGKILYVGRAQKKAER 284
NG + K L V A +R
Sbjct: 103 GLNGFNILNKRLKVALAASGHQR 125
Score = 49.5 bits (117), Expect = 4e-08
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 92 RPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK 151
+ I +P + + N+ + + ++D + F +G I S K+ D +
Sbjct: 28 QHIPPTQMNPEPDVLR----NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQS 83
Query: 152 GY-GFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYI 208
GFV F++ +A ++I +NG + +K + V +R G N Y+
Sbjct: 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVG--DGNGYL 139
Score = 37.2 bits (85), Expect = 7e-04
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 76 DTERALDTMNFDALKGRPIRIMWS----QRDPSLRKSGVGNVFI 115
++A+ +N + + +++ + QR G GN ++
Sbjct: 96 SAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNGYL 139
Score = 29.1 bits (64), Expect = 0.36
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPF 329
NL V + ++D+ +LR+ F +
Sbjct: 44 NLMVNYIPTTVDEVQLRQLFERY 66
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 55.1 bits (132), Expect = 1e-10
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM--NNDGKSRGFGFVAYESPEFAEKAVQ 261
T + ++N + +++ + F Y I + N G G VA+ES + A AV
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 262 AWNGKEVDGKILYV 275
N + + + + +
Sbjct: 70 DLNDRPIGSRKVKL 83
Score = 49.7 bits (118), Expect = 1e-08
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 107 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSC-KVAQDEQGNSKGYGFVHFETEEAAN 165
K G + ++N+ ++ + D F + I + +E+G G V FE+ + A
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 65
Query: 166 KSIEKVNGMLLNSKIVFV 183
++ +N + S+ V +
Sbjct: 66 AAVIDLNDRPIGSRKVKL 83
Score = 24.6 bits (53), Expect = 6.4
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 78 ERALDTMNFDALKGRPIRIMW 98
A+ +N + R ++++
Sbjct: 65 TAAVIDLNDRPIGSRKVKLVL 85
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 54.6 bits (131), Expect = 1e-10
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAW 263
+++ D +EK++E F +G + S + ++ K RGF F+ ++ E +K ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK- 60
Query: 264 NGKEVDGKILYVGRA 278
V + A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 49.6 bits (118), Expect = 8e-09
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKV 171
+F+ L + + + F FG + S ++ D + +G+ F+ F+ EE K +EK
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 172 NGMLLNSKI 180
+ SK
Sbjct: 62 YHNVGLSKC 70
Score = 30.7 bits (69), Expect = 0.036
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFG 330
++V L +E++R+ F FG
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFG 24
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 55.0 bits (131), Expect = 2e-10
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 197 GEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVM-NNDGKSRGFGFVAYESPEF 255
G ++ N++I N + + +LK V+ G +R FG+V +ES E
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAED 66
Query: 256 AEKAVQAWNGKEVDGKILYVGRAQKK 281
EKA++ G +V G + + + + +
Sbjct: 67 LEKALE-LTGLKVFGNEIKLEKPKGR 91
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 54.5 bits (131), Expect = 2e-10
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 202 LFTNVYIKNFGEDFND--EKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKA 259
+F + ++ N+ E L+ +G I +++ D G V++ PE A+
Sbjct: 16 MFHPMDFEDDPLVLNEIREDLRVECSKFGQIR--KLLLFDRHPDGVASVSFRDPEEADYC 73
Query: 260 VQAWNGKEVDGKILYVGRAQKK 281
+Q +G+ G+ +
Sbjct: 74 IQTLDGRWFGGRQITAQAWDGT 95
Score = 39.9 bits (93), Expect = 3e-05
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 113 VFIKNL--------DKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAA 164
V IKN+ D + N+ D + + G V F E A
Sbjct: 11 VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEA 70
Query: 165 NKSIEKVNGMLLNSKIVFVGKFIPR 189
+ I+ ++G + + +
Sbjct: 71 DYCIQTLDGRWFGGRQITAQAWDGT 95
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 53.6 bits (128), Expect = 4e-10
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTIT--SYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ NF + ++++ + + SR F ++ S E A V+
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 264 NGKEVDGKILYVGRAQ 279
NG +++G L +
Sbjct: 64 NGLKIEGYTLVTKVSN 79
Score = 44.4 bits (104), Expect = 6e-07
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEKV 171
+++ N S + + D + + N S+ + ++ ++E A +EK+
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 172 NGMLLNSKIVFV 183
NG+ + +
Sbjct: 64 NGLKIEGYTLVT 75
Score = 33.2 bits (75), Expect = 0.006
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTIT 333
L++ N S +R +
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVA 29
Score = 24.8 bits (53), Expect = 5.8
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ 100
D ++ +N ++G + S
Sbjct: 55 DARYCVEKLNGLKIEGYTLVTKVSN 79
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 53.1 bits (127), Expect = 5e-10
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+Y+ D L+ F P+G I + R FV YE E A++AV
Sbjct: 6 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAEL 59
Query: 264 NGKEVDGKILYVGRAQKK 281
NG +V+ L V A+K+
Sbjct: 60 NGTQVESVQLKVNIARKQ 77
Score = 38.9 bits (90), Expect = 5e-05
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+++ D + + FS FG+I+ + FV +E E+A++++ ++
Sbjct: 7 TLYVYGED--MTPTLLRGAFSPFGNIIDLS-----MDPPRNCAFVTYEKMESADQAVAEL 59
Query: 172 NGMLLNSKIVFV 183
NG + S + V
Sbjct: 60 NGTQVESVQLKV 71
Score = 34.6 bits (79), Expect = 0.002
Identities = 4/32 (12%), Positives = 16/32 (50%)
Query: 72 PYMLDTERALDTMNFDALKGRPIRIMWSQRDP 103
M ++A+ +N ++ +++ +++ P
Sbjct: 47 EKMESADQAVAELNGTQVESVQLKVNIARKQP 78
Score = 27.3 bits (60), Expect = 0.71
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPFGTITS 334
+G LYV D + LR F+PFG I
Sbjct: 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIID 32
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.0 bits (129), Expect = 5e-10
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQ 261
+Y+KN + L +F + + RG F+ + + E A +A+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 262 AWNGKEVDGKILYVGRAQKKAERT 285
NG ++ GKIL + + K +R+
Sbjct: 79 LVNGYKLYGKILVIEFGKNKKQRS 102
Score = 44.8 bits (105), Expect = 7e-07
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
+++KNL + + + F+ F + G +G F+ F +E A +++
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 79
Query: 171 VNGMLLNSKIVFVGKFIPRKER 192
VNG L KI+ + +K+R
Sbjct: 80 VNGYKLYGKILVIEFGKNKKQR 101
Score = 28.6 bits (63), Expect = 0.32
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 293 EMLKIERLNRYQ----GVNLYVKNLDDSIDDERLRKEFTPFGTITSA 335
E+ KI + Y LY+KNL + + L F F
Sbjct: 2 EIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP 48
Score = 27.8 bits (61), Expect = 0.73
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 78 ERALDTMNFDALKGRPIRIMWSQR 101
+AL +N L G+ + I + +
Sbjct: 74 WQALHLVNGYKLYGKILVIEFGKN 97
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 52.8 bits (126), Expect = 7e-10
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYR--VMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+++ + E +K FE +G + + RGFGFV +ES + EK +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI- 60
Query: 264 NGKEVDGKILYVGRA 278
+ E++ K++ +A
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 42.0 bits (98), Expect = 4e-06
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVA-QDEQGNSKGYGFVHFETEEAANKSIEKV 171
+F+ L + + + F FG + + +G+GFV FE+E+ K E
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI- 60
Query: 172 NGMLLNSKIVFVGK 185
+ +N+K+V K
Sbjct: 61 HFHEINNKMVECKK 74
Score = 28.9 bits (64), Expect = 0.17
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTIT 333
++V L + E ++ F FG +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVD 27
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 52.8 bits (126), Expect = 7e-10
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+ + +KN +D N +++ ++ + Y Y ++ FV + E A+ A+Q +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDR-----NKRTAFVTLLNGEQAQNAIQMF 60
Query: 264 NGKEVDGKILYVGRAQKKA 282
+ GK L V A
Sbjct: 61 HQYSFRGKDLIVQLQPTDA 79
Score = 47.8 bits (113), Expect = 5e-08
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 108 SGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKS 167
SG + +KNL + + + ++D + +K FV E A +
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCY------VDRNKRTAFVTLLNGEQAQNA 56
Query: 168 IEKVNGMLLNSKIVFVGKFIPRKER 192
I+ + K + V + P
Sbjct: 57 IQMFHQYSFRGKDLIV-QLQPTDAL 80
Score = 29.7 bits (66), Expect = 0.11
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRK 107
+ A+ + + +G+ + + D L
Sbjct: 52 QAQNAIQMFHQYSFRGKDLIVQLQPTDALLCS 83
Score = 27.4 bits (60), Expect = 0.71
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFG 330
+ VKNL + + + +
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYD 30
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 52.9 bits (126), Expect = 1e-09
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDG-KSRGFGFVAYESPEFAEKAVQA 262
TN+YI N ++++L+ M +P+G + S R++ + SRG GF ES E E +
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 78
Query: 263 WNGKEVDGKILYVGRAQ 279
+NGK + +
Sbjct: 79 FNGKFIKTPPGVSAPTE 95
Score = 44.8 bits (105), Expect = 7e-07
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
N++I NL S+D + + + FG ++S ++ +D G S+G GF E+ E I
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 172 NGMLLNSKIVFVGKFIP 188
NG + + P
Sbjct: 80 NGKFIKTPPGVSAPTEP 96
Score = 27.8 bits (61), Expect = 0.73
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 288 LKRRFEMLKIERLNRYQGVNLYVKNLDDSIDDERLRKEFTPF 329
LK ++ + NLY+ NL S+D++ L PF
Sbjct: 1 LKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPF 42
Score = 27.4 bits (60), Expect = 0.83
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQ 100
E + N +K P ++
Sbjct: 71 KCEAVIGHFNGKFIKTPPGVSAPTE 95
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.9 bits (121), Expect = 5e-09
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNND--GKSRGFGFVAYESPEFAEKAVQAW 263
++ N D +E +KE F + +GFG+ +E + A+
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL- 76
Query: 264 NGKEVDGKILYVGRAQKKAER 284
N + + K + V A + ++
Sbjct: 77 NEESLGNKRIRVDVADQAQDK 97
Score = 43.2 bits (101), Expect = 3e-06
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQ-GNSKGYGFVHFETEEAANKSIEKV 171
F+ NL + +++ + F + KG+G+ FE ++ +
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLS-ALSL 76
Query: 172 NGMLLNSKIVFVGKFIPRKEREK 194
N L +K + V ++++
Sbjct: 77 NEESLGNKRIRVDVADQAQDKDS 99
Score = 27.8 bits (61), Expect = 0.79
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 308 LYVKNLDDSIDDERLRKEFTPF 329
++ NL + +E +++ F
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGL 39
Score = 25.8 bits (56), Expect = 3.0
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 73 YMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSG 109
LD+ + ++N ++L + IR+ + + + SG
Sbjct: 65 EDLDSLLSALSLNEESLGNKRIRVDVADQAQD-KDSG 100
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 50.2 bits (119), Expect = 8e-09
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQ 261
V+I+N D +E L E+ + +G + RV+ + S+G F + + E A+K +
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 262 AWN------GKEVDGKILYVGRAQKKAER 284
A + G ++DG+ L V A + E
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 41.7 bits (97), Expect = 1e-05
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSIEK 170
VFI+NL + +A+ + FG + +V SKG F F T+EAA K +
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 171 VN------GMLLNSKIVFVGKFIPRKER 192
+ G+ L+ + + V + R E
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 27.5 bits (60), Expect = 0.75
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFTPF 329
+G ++++NL ++E L + F
Sbjct: 7 EGKTVFIRNLSFDSEEEALGEVLQQF 32
Score = 25.2 bits (54), Expect = 5.6
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 76 DTERALDTMNFDA------LKGRPIRIMWSQ 100
++ L + +A L GR +++ +
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 49.7 bits (118), Expect = 9e-09
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 204 TNVYIKNFGEDFNDEK-LKEMFEPYGTITSYRVM---NNDGKSRGFGFVAYESPEFAEKA 259
+ I+N + DE L+E FE +G+I + + F+ +E+ + AE+A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 260 VQAWNGKEVDGKILYVGRAQKK 281
+Q N + + + V A KK
Sbjct: 65 LQM-NRSLLGNREISVSLADKK 85
Score = 36.6 bits (84), Expect = 4e-04
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 112 NVFIKNLDKS-IDNKAMYDTFSAFGSILSCKVAQ--DEQGNSKGYGFVHFETEEAANKSI 168
+ I+NL +D + ++F FGSI + E + F+ FE +++A +++
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 169 EKVNGMLLNSKIVFVGKFIPR 189
+ +N LL ++ + V +
Sbjct: 66 Q-MNRSLLGNREISVSLADKK 85
Score = 28.2 bits (62), Expect = 0.43
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDP 103
ERAL MN L R I + + + P
Sbjct: 60 SAERALQ-MNRSLLGNREISVSLADKKP 86
Score = 25.5 bits (55), Expect = 3.6
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 304 QGVNLYVKNLD-DSIDDERLRKEFTPF 329
+G + ++NL + +D+ LR+ F F
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGF 29
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 49.1 bits (116), Expect = 1e-08
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
T V +KN + +N K+ + F+ G I V ++ K+ F + + A
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARY-DGALAAITK 59
Query: 264 NGKEVDGKILYVGRA 278
K V + V
Sbjct: 60 THKVVGQNEIIVSHL 74
Score = 35.2 bits (80), Expect = 0.001
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
V +KNL KS + +Y F G I+ VA + N + + + F + A +I K
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR-FARIEFARYDGALAAITKT 60
Query: 172 NGMLLNSKI 180
+ ++ ++I
Sbjct: 61 HKVVGQNEI 69
Score = 29.0 bits (64), Expect = 0.17
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITSAK 336
+ VKNL S + ++ K F G I
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVD 31
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 48.6 bits (115), Expect = 3e-08
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
V + + + LK+ G + V + G V Y E E A++
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-----MGMVEYLRKEDMEYALRKL 70
Query: 264 NGKEVDGKILYVGRAQKKAERT 285
+ + + ER+
Sbjct: 71 DDTKFRSHEGETSYIRVYPERS 92
Score = 40.5 bits (94), Expect = 2e-05
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
V + L S + + D G G V + +E ++ K++
Sbjct: 18 VLVSGLPPSGSWQDLKDHMR------EAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLD 71
Query: 173 GMLLNSKIVFVGKFIPRKEREK 194
S ER
Sbjct: 72 DTKFRSHEGETSYIRVYPERSS 93
Score = 28.2 bits (62), Expect = 0.48
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSG 109
D E AL ++ + + + P R SG
Sbjct: 62 DMEYALRKLDDTKFRSHEGETSYIRVYPE-RSSG 94
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 47.5 bits (112), Expect = 4e-08
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITS--YRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
+YI+ D+ L ++ +PYG I S + K +G+GFV ++SP A+KAV A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 264 NGKEVDGKIL 273
V ++
Sbjct: 61 KASGVQAQMA 70
Score = 37.4 bits (86), Expect = 1e-04
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVA-QDEQGNSKGYGFVHFETEEAANKSIEKV 171
++I+ L ++ + +G I+S K KGYGFV F++ AA K++ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 172 NGMLLNSKIV 181
+ +++
Sbjct: 61 KASGVQAQMA 70
Score = 25.1 bits (54), Expect = 3.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 308 LYVKNLDDSIDDERLRKEFTPF 329
LY++ L D+ L K P+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY 22
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 47.8 bits (113), Expect = 4e-08
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGK--SRGFGFVAYESPEFAEKAVQAW 263
+++ ED + L++ FE YG I +M + G RGF FV ++ + + +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD-SVDKIVIQ 63
Query: 264 NGKEVDGKILYVGRA 278
V+G V +A
Sbjct: 64 KYHTVNGHNCEVRKA 78
Score = 40.9 bits (95), Expect = 1e-05
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGN-SKGYGFVHFETEEAANKSI 168
V +F+ + + + + D F +G I ++ D +G+ FV F+ ++ +K +
Sbjct: 2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 61
Query: 169 EKVNGMLLNSKIVFVGK 185
+ +N V K
Sbjct: 62 IQ-KYHTVNGHNCEVRK 77
Score = 26.2 bits (57), Expect = 1.9
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 308 LYVKNLDDSIDDERLRKEFTPF 329
++V + + ++ LR F +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQY 26
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 47.2 bits (111), Expect = 1e-07
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 197 GEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFA 256
G + T + KN +++E F +G++ + V + P A
Sbjct: 4 GSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG----GITAIVEFLEPLEA 59
Query: 257 EKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRR 291
KA + + LY+ A K+
Sbjct: 60 RKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKD 94
Score = 34.2 bits (77), Expect = 0.005
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+ KNL + +TFS FGS+ V F A K+ +
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVL-----LPEGGITAIVEFLEPLEARKAFRHL 66
Query: 172 NGMLLNSKIVFV-----GKFIPRKEREKELGEKAK 201
+ +++ G F +++ E+
Sbjct: 67 AYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPA 101
Score = 25.3 bits (54), Expect = 5.2
Identities = 3/32 (9%), Positives = 10/32 (31%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRK 107
+ +A + + P+ + W+
Sbjct: 58 EARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA 89
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.5 bits (110), Expect = 2e-07
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 218 EKLKEMFEPYGTITSYRVM----NNDGKSRGFGFVAYESPEFAEKAVQAWNGKEVDGKIL 273
E +++ YG + S + + G FV + S +KA+Q G++ +++
Sbjct: 29 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 88
Query: 274 YV 275
Sbjct: 89 VT 90
Score = 35.0 bits (80), Expect = 0.002
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 127 MYDTFSAFGSILSCKVAQD---EQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFV 183
+ D S +G + S ++ + + G FV F + K+++ + G +++V
Sbjct: 31 VRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVT 90
Query: 184 GKFIPRKEREKE 195
P ++
Sbjct: 91 KYCDPDSYHRRD 102
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 45.7 bits (108), Expect = 2e-07
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
T V + F + L + F YG I + + + + + Y+S A KA+
Sbjct: 5 TWVTVFGFPQASASYILLQ-FAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALS-K 58
Query: 264 NGKEVDGK-ILYVGRAQKKA 282
+G+ ++ V K
Sbjct: 59 DGRIFGESIMIGVKPCIDKN 78
Score = 36.5 bits (84), Expect = 5e-04
Identities = 11/77 (14%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
V + ++ + + F+ +G+IL ++ + + ++++ A K++ K
Sbjct: 7 VTVFGFPQASAS-YILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSKDG 60
Query: 173 GMLLNSKIVFVGKFIPR 189
+ S ++ V I +
Sbjct: 61 RIFGESIMIGVKPCIDK 77
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 46.4 bits (109), Expect = 2e-07
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITS--YRVMNNDGKSRGFGFVAYESPEFAEKAVQ 261
+I N + + E + + +++N+G+ G V +++ + A K+ +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 262 AWNGKEVDGKILYVGRAQKKAERTQELKR 290
+ K+++G+ +V + R E
Sbjct: 69 -LHRKKLNGREAFVHVVTLEDMREIEKNP 96
Score = 44.5 bits (104), Expect = 1e-06
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHFETEEAANKSIEK 170
I N+ SI + + G G V F+ E+ A KS
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 69
Query: 171 VNGMLLNSKIVFVGKFIPRKEREKE 195
+ LN + FV RE E
Sbjct: 70 -HRKKLNGREAFVHVVTLEDMREIE 93
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 45.9 bits (108), Expect = 3e-07
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
V G + +L + E G + + + N + + F Y + E +++A NG
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNG 78
Query: 266 KEV-DGK----ILYVGRAQK 280
KEV D LY+ +K
Sbjct: 79 KEVVDDLGQKITLYLNFVEK 98
Score = 39.3 bits (91), Expect = 6e-05
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 18/100 (18%)
Query: 101 RDPSLRKSGVGN---------VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK 151
+ LR G+ V L + + G + + + ++
Sbjct: 2 KHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP---- 57
Query: 152 GYGFVHFETEEAANKSIEKVNGMLL----NSKIVFVGKFI 187
Y F + T E + ++ +NG + KI F+
Sbjct: 58 -YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.8 bits (108), Expect = 3e-07
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
T +++ G + + L F+ +G+I + + F ++ YES + A+ A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKM 73
Query: 264 NGKEVDG--KILYVGRAQKK 281
G + G + L V A+
Sbjct: 74 RGFPLGGPDRRLRVDFAKSG 93
Score = 37.7 bits (87), Expect = 2e-04
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 91 GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNS 150
G +I + + +P+ R +++ L + A+ F FGSI + + +
Sbjct: 4 GSSGKIGYGKANPTTR------LWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS--- 54
Query: 151 KGYGFVHFETEEAANKSIEKVNGMLLN 177
+ ++ +E+ +AA + K+ G L
Sbjct: 55 --FAYIQYESLDAAQAACAKMRGFPLG 79
Score = 30.8 bits (69), Expect = 0.052
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 76 DTERALDTMNFDALKG--RPIRIMWSQRDPS 104
+ A M L G R +R+ +++ PS
Sbjct: 65 AAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95
Score = 27.3 bits (60), Expect = 0.83
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPF 329
L+V L + L +EF F
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRF 41
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 45.5 bits (107), Expect = 4e-07
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 206 VYIKNFGEDFNDEK-LKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQA-- 262
V+I +F N L ++ EP+G I+++ ++N F+ + E A+ AV
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYT 66
Query: 263 WNGKEVDGKILYVGRAQKKAER 284
V GK + V +QK
Sbjct: 67 TTPALVFGKPVRVHLSQKYKRI 88
Score = 28.5 bits (63), Expect = 0.35
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 67 VQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLR 106
+++ T + G+P+R+ SQ+ ++
Sbjct: 50 IEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK 89
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 45.1 bits (106), Expect = 7e-07
Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 204 TNVYIKNFG-EDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQA 262
+ + + N E + L +F YG + +++ N + V A+ A+
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSH 59
Query: 263 WNGKEVDGKILYVGRAQKKAERT----QELKRRFEMLKIERLNRYQ 304
NG ++ GK + + ++ + + QE + + L+R++
Sbjct: 60 LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFK 105
Score = 27.8 bits (61), Expect = 0.71
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDP 103
+ A+ +N L G+PIRI S+
Sbjct: 52 QAQLAMSHLNGHKLHGKPIRITLSKHQN 79
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.0 bits (103), Expect = 2e-06
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
V+++ + + F P + + + DG+ G V + + E A A+ +
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDK 76
Query: 266 KEVDGKILYVGRAQKKAERTQ 286
+ + + +
Sbjct: 77 ANMQHRYVELFLNSTAGTSGS 97
Score = 28.6 bits (63), Expect = 0.44
Identities = 3/34 (8%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSG 109
D A+ + ++ R + + + +
Sbjct: 67 DAVAAMA-KDKANMQHRYVELFLNSTAGTSGSGP 99
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 42.6 bits (99), Expect = 3e-06
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
+ I+ D ++++ ++ Y K +G FV + E AE A+ ++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-----ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQ 55
Query: 266 KEVDGKILYVGRAQKKA 282
+ + L V A
Sbjct: 56 SRLRERELSVQLQPTDA 72
Score = 33.7 bits (76), Expect = 0.004
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+ I+ L + N+ ++D S ++ KG FV E A +I +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLS------DYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFH 54
Query: 173 GMLLNSKIVFV 183
L + + V
Sbjct: 55 QSRLRERELSV 65
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 42.9 bits (100), Expect = 3e-06
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 205 NVYIKNFGEDFNDEKLKEMFE---PYGTITSYRVMNN-----DGKSRGFGFVAYESPEFA 256
V++ + D ++ + E +G I + N+ +V Y E A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 257 EKAVQAWNGKEVDGKILYV 275
+A+Q N VDG+ L
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
Score = 36.0 bits (82), Expect = 7e-04
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 112 NVFIKNLDKSIDN---KAMYDTFSAFGSILSCKVAQDEQGN----SKGYGFVHFETEEAA 164
VF+ L + + + + F FG I + +V + E A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 165 NKSIEKVNGMLLNSKIV 181
++I+ VN ++++ + +
Sbjct: 70 LRAIQCVNNVVVDGRTL 86
Score = 25.9 bits (56), Expect = 2.5
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 47 VKYDWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRI 96
V + + Y Q S + V + D RA+ +N + GR ++
Sbjct: 41 VVINNSTSYAGSQGPSASAYVTYIRSE--DALRAIQCVNNVVVDGRTLKA 88
Score = 25.5 bits (55), Expect = 3.6
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 304 QGVNLYVKNLDDSIDDERLRKEFT---PFGTITSAK 336
Q ++V L + D + K FG I
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVV 42
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 42.9 bits (100), Expect = 4e-06
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAW 263
V+++ E + L E E +GTI +M + V +E+ + A++ V
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFA 71
Query: 264 NGK--EVDGKILYVGRAQKKAERT 285
+ G+ + + K
Sbjct: 72 ADVPVYIAGQQAFFNYSTSKRITR 95
Score = 34.8 bits (79), Expect = 0.003
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV- 171
V ++ L +S+ + + FG+I + ++ V FE ++A + +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-----QALVEFENIDSAKECVTFAA 72
Query: 172 -NGMLLNSKIVFV 183
+ + + F
Sbjct: 73 DVPVYIAGQQAFF 85
Score = 25.9 bits (56), Expect = 3.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 308 LYVKNLDDSIDDERLRKEFTPFGTITSA 335
++V+ L +S+ + L + FGTI
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYV 45
Score = 25.9 bits (56), Expect = 3.8
Identities = 4/39 (10%), Positives = 9/39 (23%), Gaps = 2/39 (5%)
Query: 76 DTERALDTMNFDA--LKGRPIRIMWSQRDPSLRKSGVGN 112
+ + + G+ +S R G
Sbjct: 63 SAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGP 101
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 42.0 bits (98), Expect = 4e-06
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 204 TNVYIKNFGEDFNDEKLKEMFEPYGTITSYRV-MNNDGKSRGFGFVAYESPEFAEKAVQA 262
+VYIK F D + +KE E G + + ++ +G FV ++S E A+K V+
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 66
Query: 263 WNGKEVDGKILYV 275
G++ L +
Sbjct: 67 -PGQKYKETDLLI 78
Score = 38.9 bits (90), Expect = 7e-05
Identities = 14/70 (20%), Positives = 30/70 (42%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+V+IK + + G +L+ ++ + KG FV F++ E+A K +E
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 67
Query: 172 NGMLLNSKIV 181
+ ++
Sbjct: 68 GQKYKETDLL 77
Score = 25.5 bits (55), Expect = 3.4
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTITS 334
++Y+K + +++ G + +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLN 35
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 40.2 bits (93), Expect = 2e-05
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
+++ N E+ N+ L +F + R++ N FV + + + A +A G
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFTTELQSNAAKEALQG 67
Query: 266 KEVD-GKILYVGRAQK 280
++ + + A+K
Sbjct: 68 FKITPTHAMKITFAKK 83
Score = 35.2 bits (80), Expect = 0.001
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
+F+ NL + + + F+ F ++ + FV F TE +N + E +
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRH----DIAFVEFTTELQSNAAKEALQ 66
Query: 173 GMLLN 177
G +
Sbjct: 67 GFKIT 71
Score = 25.2 bits (54), Expect = 3.7
Identities = 3/27 (11%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 76 DTERALDTMN-FDALKGRPIRIMWSQR 101
+ A + + F ++I ++++
Sbjct: 57 QSNAAKEALQGFKITPTHAMKITFAKK 83
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 40.3 bits (93), Expect = 2e-05
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 206 VYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
V + + + LK+ G + V + G V + E AV+ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG-----TGVVEFVRKEDMTYAVRKLDN 57
Query: 266 KEVDGKILYVGRAQKKAER 284
+ + K +
Sbjct: 58 TKFRSHEGETAYIRVKVDG 76
Score = 34.5 bits (78), Expect = 0.002
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 113 VFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVN 172
V + L S + + D G G V F +E ++ K++
Sbjct: 3 VVVSGLPPSGSWQDLKDHMR------EAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLD 56
Query: 173 GMLLNSKIVFVGKFIPRKEREK 194
S + + +
Sbjct: 57 NTKFRSHEGETAYIRVKVDGPR 78
Score = 27.9 bits (61), Expect = 0.56
Identities = 3/34 (8%), Positives = 10/34 (29%)
Query: 76 DTERALDTMNFDALKGRPIRIMWSQRDPSLRKSG 109
D A+ ++ + + + +S
Sbjct: 47 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 80
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 40.4 bits (93), Expect = 3e-05
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 188 PRKEREKELGEKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGF 247
P + +++ +K +L +++ N + + + F
Sbjct: 3 PEGKPDQKFDQKQELGRVIHLSNLPHSGYSD---SAVLKLAEPYGKIKNYILMRMKSQAF 59
Query: 248 VAYESPEFAEKAVQAWN--GKEVDGKILYVGRAQKKAE 283
+ E+ E A V G+ + V ++K +
Sbjct: 60 IEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 97
Score = 24.6 bits (52), Expect = 8.0
Identities = 4/49 (8%), Positives = 13/49 (26%)
Query: 57 CHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSL 105
+++ +GR +++ S++ L
Sbjct: 50 ILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 98
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.4 bits (91), Expect = 5e-05
Identities = 11/83 (13%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 205 NVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAEKAVQAWN 264
++I+ + + ++ + P+G +T+ ++ + F+ + E A V ++
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYS 65
Query: 265 GK--EVDGKILYVGRAQKKAERT 285
+ + +Y+ + K +T
Sbjct: 66 AVTPHLRNQPIYIQYSNHKELKT 88
Score = 26.7 bits (58), Expect = 1.2
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 76 DTERALDTMNFD--ALKGRPIRIMWSQR 101
++ + L+ +PI I +S
Sbjct: 56 AAITMVNYYSAVTPHLRNQPIYIQYSNH 83
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.0 bits (85), Expect = 3e-04
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 112 NVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKV 171
+ + N+ S+ + + FS+ G ++ + + + E A +++ +
Sbjct: 12 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK---MALIQMGSVEEAVQALIDL 68
Query: 172 NGMLL 176
+ L
Sbjct: 69 HNHDL 73
Score = 26.3 bits (57), Expect = 1.8
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 307 NLYVKNLDDSIDDERLRKEFTPFGTIT 333
L++ N+ S+ +E L+ F+ G +
Sbjct: 12 TLHLSNIPPSVSEEDLKVLFSSNGGVV 38
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 29.9 bits (66), Expect = 0.14
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 100 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQD-EQGNSKGYGFVHF 158
R S ++G V++K L +NK + D F + G + G GFV F
Sbjct: 9 SRSRSPHEAGF-CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 67
Query: 159 ETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREK 194
E ++ + + + ++ + V + EK
Sbjct: 68 RNEADYKAALCR-HKQYMGNRFIQVHPITKKGMLEK 102
>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening
dioxygenase LigAB {Pseudomonas paucimobilis [TaxId:
13689]}
Length = 298
Score = 29.6 bits (66), Expect = 0.45
Identities = 23/122 (18%), Positives = 34/122 (27%), Gaps = 10/122 (8%)
Query: 50 DWDSGYTCHQLGSGAILVQLGQPYMLDTERALDTMNFDALKGRPIRIMWSQRDPSLRKSG 109
+ H G+G + QL P + D D L P + LR+SG
Sbjct: 177 SFPEDLNVHVWGTGGMSHQLQGPRAGLINKEFDLNFIDKLISDPEELSKMPHIQYLRESG 236
Query: 110 VGNVFIKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSK-GYGFVHFETEEAANKSI 168
V + M A + S G + + EE A +
Sbjct: 237 SEGVELVMWL------IM---RGALPEKVRDLYTFYHIPASNTALGAMILQPEETAGTPL 287
Query: 169 EK 170
E
Sbjct: 288 EP 289
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 26.6 bits (59), Expect = 1.3
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 147 QGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGE 198
+ KG+GF+ + +++ ++ ++ +I+ V E+E+E E
Sbjct: 24 KATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAV----IHSEKERESAE 71
>d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria
meningitidis [TaxId: 487]}
Length = 163
Score = 27.6 bits (61), Expect = 1.6
Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 245 FGFVAYESPEFAEKAVQAWNGKEVDGKILYVGRAQKKAERTQELKRRFEMLKIERLNRYQ 304
F A + +Q G DG I G KA + ERL Y
Sbjct: 82 FDACVNHGYGNAARMLQRAAGVPDDGVI---GAVSLKAINSLPENDLLLRFNAERLVFYT 138
Query: 305 G 305
Sbjct: 139 K 139
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter
globiformis [TaxId: 1665]}
Length = 156
Score = 27.0 bits (60), Expect = 2.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 201 KLFTNVYIKNFGEDFNDEKLKEMFEPYGTIT 231
K V ++ FG+D +E PYG I
Sbjct: 109 KHHFLVDLQPFGQDNPNEVFYAADRPYGLIE 139
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 26.9 bits (59), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 227 YGTITSYRVM-NNDGKSRGFGFVAYESPEFAEKAVQAWNG 265
YG+++S + + NN G R G + + S E V+ W G
Sbjct: 216 YGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQG 255
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
{Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Length = 262
Score = 26.1 bits (57), Expect = 5.8
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 149 NSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELGEKAKLFTNVYI 208
+ +GY F T E + EKV+ L + + G + P K + +L + ++
Sbjct: 35 SLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKA--TQQQLIDDHFL 92
Query: 209 KNFGEDF 215
G+ F
Sbjct: 93 FKEGDRF 99
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 25.8 bits (55), Expect = 6.6
Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 2/167 (1%)
Query: 138 LSCKVAQDEQGNSKGYGFVHFETEEAANKSIEKVNGMLLNSKIVFVGKFIPRKEREKELG 197
K+ + +G F N + + K+V +
Sbjct: 27 FRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTA 86
Query: 198 EKAKLFTNVYIKNFGEDFNDEKLKEMFEPYGTITSYRVMNNDGKSRGFGFVAYESPEFAE 257
KL V+ K+M+ + S N G E
Sbjct: 87 MLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR 146
Query: 258 KAVQAWNGKEVDGKILYVGRA--QKKAERTQELKRRFEMLKIERLNR 302
A + ++ + + E ++R FE + I+RL+R
Sbjct: 147 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 193
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 25.6 bits (55), Expect = 8.1
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 282 AERTQELKRRFEMLKIERLNRYQGVNLYVK 311
+ER ++ + +L +N+ ++ K
Sbjct: 12 SERIKKFANKTPVLTSSTVNKEFVAEVFFK 41
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani
[TaxId: 1513]}
Length = 247
Score = 25.5 bits (55), Expect = 9.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 115 IKNLDKSIDNKAMYDTFSAFGSILSCKVAQDEQGNSKGYG 154
+KNLD +DN+ D +IL+ + D + G+
Sbjct: 1 MKNLDCWVDNEEDIDVILKKSTILNLDINNDIISDISGFN 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.381
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,263,170
Number of extensions: 61295
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 302
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)