BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12551
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 89.0 bits (219), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/52 (82%), Positives = 48/52 (92%), Gaps = 2/52 (3%)
Query: 11 YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
YI + +++ VNPSRLPVVVGGLLDVDCSEDIIKNLILVV+GQFSTDELVEE
Sbjct: 800 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVKGQFSTDELVEE 849
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Length = 1675
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)
Query: 11 YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
YI + +++ VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Length = 1675
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)
Query: 11 YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
YI + +++ VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Length = 1675
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)
Query: 11 YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
YI + +++ VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)
Query: 11 YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
YI + +++ VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2
Length = 1640
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/52 (67%), Positives = 44/52 (84%), Gaps = 2/52 (3%)
Query: 11 YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
YI + +++ VNPSR P V+GGLLDVDCSE++IK+LI+ VRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRTPAVIGGLLDVDCSEEVIKHLIMAVRGQFSTDELVAE 848
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1
PE=3 SV=1
Length = 1681
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Query: 11 YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
YI V +++ VN +RLP+VVG LLDVDCSED IK LI+ RG+F DELVEE
Sbjct: 801 YIEVFVQK--VNAARLPIVVGALLDVDCSEDAIKQLIINTRGKFDIDELVEE 850
>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=chc1 PE=1 SV=1
Length = 1666
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 20 QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
++NPS+ P VVG LLD+DC E++++NL++ V GQ DELVEE
Sbjct: 803 RINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELVEE 845
>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Length = 1694
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 20 QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
++NP P+VVG LLD+DC ED ++NLI+ VR D LVE+
Sbjct: 807 KINPVNTPLVVGALLDLDCQEDYLRNLIMSVRNMCPADSLVEQ 849
>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1
Length = 1703
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 28/43 (65%)
Query: 20 QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
+VNP P+VVG LLD +C ED IK LIL VR + LVEE
Sbjct: 820 KVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEE 862
>sp|Q2RBN7|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica
GN=Os11g0104900 PE=3 SV=1
Length = 1708
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 20 QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
+VNP P+VVG LLD +C ED IK LIL VR + LV+E
Sbjct: 820 KVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDE 862
>sp|Q2QYW2|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica
GN=Os12g0104800 PE=3 SV=1
Length = 1708
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 20 QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
+VNP P+VVG LLD +C ED IK LIL VR + LV+E
Sbjct: 820 KVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDE 862
>sp|Q0WNJ6|CLAH1_ARATH Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1
Length = 1705
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 20 QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
+VNP P+VVG LLD +C ED IK LIL VR + LV E
Sbjct: 820 KVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVAE 862
>sp|P22137|CLH_YEAST Clathrin heavy chain OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CHC1 PE=1 SV=1
Length = 1653
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 20 QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
QVNPS+ VVG LLD+DC E I++L+ V GQ +EL E
Sbjct: 812 QVNPSKTAQVVGALLDMDCDEAFIQSLLQSVLGQVPINELTTE 854
>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=dcr1 PE=1 SV=1
Length = 1374
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 12 IPVVLRQSQVNPSRLPVVVG---GLLDVDCSEDIIKNLIL 48
+P+V +Q++ S+LP VG G L ++ SE ++ N+IL
Sbjct: 74 VPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIIL 113
>sp|Q5N163|F16PA_SYNP6 Fructose-1,6-bisphosphatase class 1 OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=fbp PE=3 SV=2
Length = 344
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 13 PVVLRQSQVNPSRLPVVVGGLLDVDCSE 40
P++LRQ Q R P+++G DVD E
Sbjct: 309 PILLRQPQALHERCPLIIGSAADVDFVE 336
>sp|Q59943|F16PA_SYNE7 Fructose-1,6-bisphosphatase class 1 OS=Synechococcus elongatus
(strain PCC 7942) GN=fbp PE=1 SV=2
Length = 344
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 13 PVVLRQSQVNPSRLPVVVGGLLDVDCSE 40
P++LRQ Q R P+++G DVD E
Sbjct: 309 PILLRQPQALHERCPLIIGSAADVDFVE 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,131,349
Number of Sequences: 539616
Number of extensions: 790882
Number of successful extensions: 1449
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 18
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)