Query psy12551
Match_columns 66
No_of_seqs 101 out of 121
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 22:15:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 99.9 3.6E-26 1.2E-30 195.5 2.0 59 5-65 793-851 (1630)
2 1i2t_A HYD protein; four alpha 82.2 0.14 4.9E-06 30.2 -1.2 29 19-49 14-42 (61)
3 3kuj_A Polyadenylate-binding p 67.0 1 3.5E-05 28.1 -0.2 29 19-49 33-61 (88)
4 1g9l_A Polyadenylate-binding p 65.0 2 7E-05 29.0 0.9 29 19-49 79-107 (144)
5 1ifw_A Polyadenylate-binding p 46.1 1.3 4.6E-05 27.9 -2.4 26 21-48 37-62 (92)
6 2dyd_A Poly(A)-binding protein 45.6 0.78 2.7E-05 28.6 -3.4 22 19-40 35-56 (85)
7 2l76_A Nfatc2-interacting prot 45.6 6.5 0.00022 24.8 0.8 19 13-31 62-80 (95)
8 1nei_A Hypothetical protein YO 44.4 4.7 0.00016 24.1 -0.0 24 30-53 26-49 (60)
9 4hl4_A TBC1 domain family memb 43.4 12 0.0004 25.6 1.9 33 32-64 251-283 (292)
10 1xi4_A Clathrin heavy chain; a 39.6 5 0.00017 35.8 -0.5 48 17-65 642-704 (1630)
11 1vk9_A Conserved hypothetical 32.6 9.2 0.00031 26.0 -0.0 16 51-66 122-137 (151)
12 1j2m_A CPI-17, 17-kDa PKC-pote 32.1 25 0.00087 22.5 2.0 14 40-53 84-97 (99)
13 1rgx_A Resistin, adipose TISS; 30.0 17 0.00058 24.0 0.9 20 43-62 15-34 (114)
14 4e2i_2 DNA polymerase alpha su 28.6 50 0.0017 20.1 2.9 30 33-62 14-44 (78)
15 3gax_A Cystatin-C; cysteine pr 27.6 22 0.00074 21.5 1.1 29 22-50 2-30 (120)
16 1nmr_A Poly(A)-binding protein 26.7 2.3 7.8E-05 26.5 -3.6 22 19-40 36-57 (85)
17 2l48_A N-acetylmuramoyl-L-alan 25.0 35 0.0012 21.3 1.7 32 6-41 16-47 (85)
18 4fc8_A Transcription protein R 24.3 17 0.00059 25.9 0.1 34 28-62 32-66 (219)
19 2jd3_A STBB protein; plasmid s 23.8 49 0.0017 22.0 2.3 36 21-57 53-88 (130)
20 2kdp_A Histone deacetylase com 22.8 39 0.0013 20.6 1.5 13 41-53 53-65 (71)
21 1ixs_A Holliday junction DNA h 22.4 61 0.0021 18.2 2.3 42 21-62 12-56 (62)
22 3l7p_A Putative nitrogen regul 22.2 19 0.00066 22.3 0.1 27 7-38 1-27 (115)
23 1wm3_A Ubiquitin-like protein 20.6 34 0.0012 18.9 0.9 17 15-31 45-61 (72)
24 2keb_A DNA polymerase subunit 20.1 86 0.003 20.1 2.8 29 34-62 38-67 (101)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=3.6e-26 Score=195.45 Aligned_cols=59 Identities=69% Similarity=1.048 Sum_probs=58.1
Q ss_pred CCCCcceeeEeeceeecCCCCcchhhhhhhccCCCHHHHHHHHHHhccCCChhhhhhhccC
Q psy12551 5 SKSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEEDKI 65 (66)
Q Consensus 5 ~n~~~kyIEvYV~~qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~sV~~~~pideLVeEvE~ 65 (66)
+|+++||||+|| |||||+|||+|||+|||+|||||+||+||++|+++||++|||+||||
T Consensus 793 ~n~~~~~ie~yv--~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ek 851 (1630)
T 1xi4_A 793 RNNLQKYIEIYV--QKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEK 851 (1630)
T ss_pred hcCchhHHHHHH--hccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 689999999999 99999999999999999999999999999999999999999999997
No 2
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=82.21 E-value=0.14 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.3
Q ss_pred eecCCCCcchhhhhhhccCCCHHHHHHHHHH
Q psy12551 19 SQVNPSRLPVVVGGLLDVDCSEDIIKNLILV 49 (66)
Q Consensus 19 qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~s 49 (66)
++.+|..++.+-|-||+.|-+| +-.||.+
T Consensus 14 ~~~~p~~A~KITGMLLE~d~~e--ll~ll~~ 42 (61)
T 1i2t_A 14 QAMQPAFASKITGMLLELSPAQ--LLLLLAS 42 (61)
T ss_dssp HHHCGGGHHHHHHHHTTSCHHH--HHHHHHC
T ss_pred HHhCcccccchhhhhccCCHHH--HHHHHcC
Confidence 5689999999999999997766 4556554
No 3
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=67.00 E-value=1 Score=28.14 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=23.8
Q ss_pred eecCCCCcchhhhhhhccCCCHHHHHHHHHH
Q psy12551 19 SQVNPSRLPVVVGGLLDVDCSEDIIKNLILV 49 (66)
Q Consensus 19 qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~s 49 (66)
++..|..++.+-|-||++|-+| +..||.+
T Consensus 33 ~~~~p~~A~KITGMLLEmd~~E--ll~lle~ 61 (88)
T 3kuj_A 33 QAMHPTLAGKITGMLLEIDNSE--LLHMLES 61 (88)
T ss_dssp HHHCTTTHHHHHHHHTTSCHHH--HHHHHHC
T ss_pred HhhCCCccchhhhHhhcCCHHH--HHHHHcC
Confidence 6789999999999999999766 4566654
No 4
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=64.99 E-value=2 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=23.0
Q ss_pred eecCCCCcchhhhhhhccCCCHHHHHHHHHH
Q psy12551 19 SQVNPSRLPVVVGGLLDVDCSEDIIKNLILV 49 (66)
Q Consensus 19 qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~s 49 (66)
+++.|..+++|-|-||++|-+| +-.||.+
T Consensus 79 ~~~~p~~A~KITGMLLEmd~~E--lL~LLes 107 (144)
T 1g9l_A 79 QAMHPTLAGKITGMLLEIDNSE--LLHMLES 107 (144)
T ss_dssp HHHTTSCCSSHHHHTTTSSSHH--HHHHHHC
T ss_pred HHhCccccchhhhhhccCCHHH--HHHHHcC
Confidence 5678999999999999999765 4455544
No 5
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=46.09 E-value=1.3 Score=27.89 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=20.9
Q ss_pred cCCCCcchhhhhhhccCCCHHHHHHHHH
Q psy12551 21 VNPSRLPVVVGGLLDVDCSEDIIKNLIL 48 (66)
Q Consensus 21 VNP~~tP~VVG~LLDvdc~E~~Ik~LL~ 48 (66)
.+|..++.+-|-||++|-+| +-.||.
T Consensus 37 ~~pelAgKITGMLLEmd~~E--lL~LLe 62 (92)
T 1ifw_A 37 SNEEAAGKITGMILDLPPQE--VFPLLE 62 (92)
T ss_dssp CCHHHHHHHHHHHTTSCHHH--HHHHHT
T ss_pred cCccccchhhHhHhcCCHHH--HHHHHc
Confidence 78999999999999988766 455554
No 6
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=45.64 E-value=0.78 Score=28.61 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.0
Q ss_pred eecCCCCcchhhhhhhccCCCH
Q psy12551 19 SQVNPSRLPVVVGGLLDVDCSE 40 (66)
Q Consensus 19 qkVNP~~tP~VVG~LLDvdc~E 40 (66)
++.+|..++.|-|-||++|-+|
T Consensus 35 ~~~~p~~AgKITGMLLEmd~~E 56 (85)
T 2dyd_A 35 DQLEHDQAAKVTGMLLEMDQTE 56 (85)
T ss_dssp CCSCHHHHHHHHHHHHHHCHHH
T ss_pred HHhCccccchhhhhhhcCCHHH
Confidence 5678999999999999998555
No 7
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=45.59 E-value=6.5 Score=24.80 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=15.1
Q ss_pred eEeeceeecCCCCcchhhh
Q psy12551 13 PVVLRQSQVNPSRLPVVVG 31 (66)
Q Consensus 13 EvYV~~qkVNP~~tP~VVG 31 (66)
--..+|+++||..||.=+|
T Consensus 62 rFlfDG~rI~~~~TP~~L~ 80 (95)
T 2l76_A 62 LLLFGETELSPTATPRTLK 80 (95)
T ss_dssp EEEETTEECCTTSCHHHHT
T ss_pred EEEECCcCCCCCCCHhHcC
Confidence 3345799999999998764
No 8
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=44.38 E-value=4.7 Score=24.11 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred hhhhhccCCCHHHHHHHHHHhccC
Q psy12551 30 VGGLLDVDCSEDIIKNLILVVRGQ 53 (66)
Q Consensus 30 VG~LLDvdc~E~~Ik~LL~sV~~~ 53 (66)
.+.|+|-+-.++.+|.|++-|||-
T Consensus 26 ~~el~~p~~aa~~vK~LvniVrgY 49 (60)
T 1nei_A 26 PMTLLVPEVAAEVIKDLVNTVRSY 49 (60)
T ss_dssp SGGGTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHhcCcHHHHHHHHHHHHHHhcc
Confidence 578889888999999999999873
No 9
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=43.35 E-value=12 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=28.2
Q ss_pred hhhccCCCHHHHHHHHHHhccCCChhhhhhhcc
Q psy12551 32 GLLDVDCSEDIIKNLILVVRGQFSTDELVEEDK 64 (66)
Q Consensus 32 ~LLDvdc~E~~Ik~LL~sV~~~~pideLVeEvE 64 (66)
.||..+++.+.+..+|+++.+..+++.|+....
T Consensus 251 ~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~ 283 (292)
T 4hl4_A 251 EVLDCDCDMASVHHLLSQIPQDLPYETLISRAG 283 (292)
T ss_dssp HHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 567788899999999999998999999988653
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=39.64 E-value=5 Score=35.77 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=41.4
Q ss_pred ceeecCCCCcchhhhhhhccCCCHHHHHHHHH---------Hh------ccCCChhhhhhhccC
Q psy12551 17 RQSQVNPSRLPVVVGGLLDVDCSEDIIKNLIL---------VV------RGQFSTDELVEEDKI 65 (66)
Q Consensus 17 ~~qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~---------sV------~~~~pideLVeEvE~ 65 (66)
..+.+||.-....+|+ |+++++-+.+|.||. .| ..++.++.||+.+|+
T Consensus 642 ~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~ 704 (1630)
T 1xi4_A 642 HTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFES 704 (1630)
T ss_pred ccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHH
Confidence 3468999999999999 899999999999995 12 578889999999886
No 11
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=32.62 E-value=9.2 Score=25.98 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.6
Q ss_pred ccCCChhhhhhhccCC
Q psy12551 51 RGQFSTDELVEEDKIP 66 (66)
Q Consensus 51 ~~~~pideLVeEvE~~ 66 (66)
.|+||++.+|.++|-|
T Consensus 122 tg~CP~E~~v~~~~dp 137 (151)
T 1vk9_A 122 KSMCPFEKLVLEMDDP 137 (151)
T ss_dssp SSBCHHHHHHHTCCCH
T ss_pred CCCCcHHHHHHccCCH
Confidence 4899999999998754
No 12
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=32.06 E-value=25 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhccC
Q psy12551 40 EDIIKNLILVVRGQ 53 (66)
Q Consensus 40 E~~Ik~LL~sV~~~ 53 (66)
|+||..||.-++|+
T Consensus 84 E~FI~eLL~rlkgl 97 (99)
T 1j2m_A 84 ENFVQELLVKLRGL 97 (99)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 57888888877764
No 13
>1rgx_A Resistin, adipose TISS; hormone, glucose uptake, resistin/FIZZ family, structural GE PSI, protein structure initiative; 1.79A {Mus musculus} SCOP: g.77.1.1 PDB: 1rfx_A*
Probab=29.98 E-value=17 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=7.9
Q ss_pred HHHHHHHhccCCChhhhhhh
Q psy12551 43 IKNLILVVRGQFSTDELVEE 62 (66)
Q Consensus 43 Ik~LL~sV~~~~pideLVeE 62 (66)
+-+||-....++|+|++|+|
T Consensus 15 ll~Llv~~~t~c~ld~~v~~ 34 (114)
T 1rgx_A 15 VPELLGSSMPLCPIDEAIDK 34 (114)
T ss_dssp -----------CCHHHHHHH
T ss_pred HHHHhccCCCCCcHHHHHHH
Confidence 34667777889999999886
No 14
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=28.64 E-value=50 Score=20.07 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=19.2
Q ss_pred hhccCCCHHHHHHHHHHh-ccCCChhhhhhh
Q psy12551 33 LLDVDCSEDIIKNLILVV-RGQFSTDELVEE 62 (66)
Q Consensus 33 LLDvdc~E~~Ik~LL~sV-~~~~pideLVeE 62 (66)
.++++|++++|-.|+.-= .-...-+++|+|
T Consensus 14 ~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~e 44 (78)
T 4e2i_2 14 IFGLDCEEALIEKLVELCVQYGQNEEGMVGE 44 (78)
T ss_dssp HTTCCCCHHHHHHHHTHHHHSCCCHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 477899998888876432 223345666655
No 15
>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A
Probab=27.62 E-value=22 Score=21.46 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=14.7
Q ss_pred CCCCcchhhhhhhccCCCHHHHHHHHHHh
Q psy12551 22 NPSRLPVVVGGLLDVDCSEDIIKNLILVV 50 (66)
Q Consensus 22 NP~~tP~VVG~LLDvdc~E~~Ik~LL~sV 50 (66)
.|.+.+.++|+.-+++.+..-++.++.-.
T Consensus 2 ~~~~~~~~~Gg~~~~~~~d~~v~~~a~~a 30 (120)
T 3gax_A 2 SPGKPPRLVGGPMDASVEEEGVRRALDFA 30 (120)
T ss_dssp ----------CCEEECTTSHHHHHHHHHH
T ss_pred CCcccCccCCCCEeCCCCCHHHHHHHHHH
Confidence 47888899999999998777777776543
No 16
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=26.72 E-value=2.3 Score=26.46 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.6
Q ss_pred eecCCCCcchhhhhhhccCCCH
Q psy12551 19 SQVNPSRLPVVVGGLLDVDCSE 40 (66)
Q Consensus 19 qkVNP~~tP~VVG~LLDvdc~E 40 (66)
++.+|..++.+-|-||++|-+|
T Consensus 36 ~~~~p~~AgKITGMLLEmd~~E 57 (85)
T 1nmr_A 36 VAINPAAAAKVTGMLLEMDNGE 57 (85)
T ss_dssp HTTCHHHHHHHHHHCSCTHHHH
T ss_pred HHhCccccchhhHhHhcCCHHH
Confidence 5678999999999999987554
No 17
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=24.99 E-value=35 Score=21.25 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.6
Q ss_pred CCCcceeeEeeceeecCCCCcchhhhhhhccCCCHH
Q psy12551 6 KSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSED 41 (66)
Q Consensus 6 n~~~kyIEvYV~~qkVNP~~tP~VVG~LLDvdc~E~ 41 (66)
++-++||..|= +.|..+|.|+|+|.++...-.
T Consensus 16 ~~k~n~V~TGg----fg~~~v~ev~~am~~~g~~gk 47 (85)
T 2l48_A 16 PTKQNIIQSGA----FSPYETPDVMGALTSLKMTAD 47 (85)
T ss_dssp SCCCCCEEECC----BCTTTHHHHHHHHHHTTCCEE
T ss_pred CCCceEEEecc----cCHHHHHHHHHHHHHcCceEE
Confidence 34457888877 789999999999988765433
No 18
>4fc8_A Transcription protein RTR1; zinc finger; 2.50A {Kluyveromyces lactis}
Probab=24.26 E-value=17 Score=25.86 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.2
Q ss_pred hhhhhhhccCC-CHHHHHHHHHHhccCCChhhhhhh
Q psy12551 28 VVVGGLLDVDC-SEDIIKNLILVVRGQFSTDELVEE 62 (66)
Q Consensus 28 ~VVG~LLDvdc-~E~~Ik~LL~sV~~~~pideLVeE 62 (66)
.+|..|+|-.| |++++|.++.-+ .+-..++||+|
T Consensus 32 ~ivE~L~e~~~~D~~~Lk~~~r~l-tps~YdDlIeE 66 (219)
T 4fc8_A 32 NLIDLLITKDVKDARTMKYISRFL-TKQDYADLVQE 66 (219)
T ss_dssp HHHHHHHHSCBCCHHHHHHHGGGC-CHHHHHHHHHH
T ss_pred HHHHHHHCCCcCCHHHHHHHHHhC-CHHHHHHHHHH
Confidence 57889999999 799999876433 35557888876
No 19
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=23.85 E-value=49 Score=21.98 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=30.5
Q ss_pred cCCCCcchhhhhhhccCCCHHHHHHHHHHhccCCChh
Q psy12551 21 VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTD 57 (66)
Q Consensus 21 VNP~~tP~VVG~LLDvdc~E~~Ik~LL~sV~~~~pid 57 (66)
++| |.|..+..|++-+-.-+-|.+++.++.+.-|..
T Consensus 53 ~Dp-RLP~LLA~~~~~~~t~~~l~~li~s~~g~~p~~ 88 (130)
T 2jd3_A 53 LDP-RLPVLLTAILSEEFSADQVVTLLSQTTGWKPSQ 88 (130)
T ss_dssp HCT-HHHHHHHHHCSTTCCHHHHHHHHHHHHCCCCCT
T ss_pred cCh-hHHHHHHHHhcCCCCHHHHHHHHHHHcCCCCch
Confidence 444 689999999999999999999999997776643
No 20
>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}
Probab=22.77 E-value=39 Score=20.63 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=11.1
Q ss_pred HHHHHHHHHhccC
Q psy12551 41 DIIKNLILVVRGQ 53 (66)
Q Consensus 41 ~~Ik~LL~sV~~~ 53 (66)
||.|++|+|+|+.
T Consensus 53 d~HK~~iqs~Rsk 65 (71)
T 2kdp_A 53 DYHKNLIQSVRNR 65 (71)
T ss_dssp HHHHHHHHTTSSS
T ss_pred hhhhhhhhhhhhh
Confidence 7899999999853
No 21
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=22.45 E-value=61 Score=18.19 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=31.5
Q ss_pred cCCCCcchhhhhhhccCCCHHHHHHHHHHhc---cCCChhhhhhh
Q psy12551 21 VNPSRLPVVVGGLLDVDCSEDIIKNLILVVR---GQFSTDELVEE 62 (66)
Q Consensus 21 VNP~~tP~VVG~LLDvdc~E~~Ik~LL~sV~---~~~pideLVeE 62 (66)
++......++-+|+-+.-++.-+...+..+. ...++++++.+
T Consensus 12 ~~~~~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ 56 (62)
T 1ixs_A 12 VESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKE 56 (62)
T ss_dssp -CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCcchHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3444445789999999999999998888883 24578888765
No 22
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=22.16 E-value=19 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=21.0
Q ss_pred CCcceeeEeeceeecCCCCcchhhhhhhccCC
Q psy12551 7 SGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDC 38 (66)
Q Consensus 7 ~~~kyIEvYV~~qkVNP~~tP~VVG~LLDvdc 38 (66)
+|+|-|++++ .|.+...|.-+|-+...
T Consensus 1 ~~MKkI~AII-----rp~kl~~Vk~AL~~~G~ 27 (115)
T 3l7p_A 1 GSMKKIEAII-----RSDKLEDLKAALVQSGF 27 (115)
T ss_dssp --CEEEEEEE-----EGGGHHHHHHHHHHHTC
T ss_pred CceEEEEEEE-----CHHHHHHHHHHHHHCCC
Confidence 4689999999 67888888888887665
No 23
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.63 E-value=34 Score=18.86 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=13.5
Q ss_pred eeceeecCCCCcchhhh
Q psy12551 15 VLRQSQVNPSRLPVVVG 31 (66)
Q Consensus 15 YV~~qkVNP~~tP~VVG 31 (66)
+-+|++++|..||.=.|
T Consensus 45 ~fdG~~l~~~~Tp~~l~ 61 (72)
T 1wm3_A 45 RFDGQPINETDTPAQLE 61 (72)
T ss_dssp EETTEECCTTCCTTTTT
T ss_pred EECCEEcCCCCCHHHcC
Confidence 34799999999997543
No 24
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.15 E-value=86 Score=20.07 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=19.9
Q ss_pred hccCCCHHHHHHHHHHh-ccCCChhhhhhh
Q psy12551 34 LDVDCSEDIIKNLILVV-RGQFSTDELVEE 62 (66)
Q Consensus 34 LDvdc~E~~Ik~LL~sV-~~~~pideLVeE 62 (66)
++++|++++|.+++.-- .-.+.-+++|+|
T Consensus 38 fGi~~~d~VldKc~ELC~~y~lda~e~Vee 67 (101)
T 2keb_A 38 FGLDCEEALIEKLVELCVQYGQNEEGMVGE 67 (101)
T ss_dssp HTCBCCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 67999999998877542 222356777765
Done!