RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12551
         (66 letters)



>gnl|CDD|114259 pfam05527, DUF758, Domain of unknown function (DUF758).  Family
          of eukaryotic proteins with unknown function, which are
          induced by tumour necrosis factor.
          Length = 186

 Score = 26.5 bits (59), Expect = 0.73
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 8/30 (26%)

Query: 39 SEDIIKNLILVV--------RGQFSTDELV 60
          ++ +IKNLI +           QFS +EL 
Sbjct: 56 AQKVIKNLIKIAVKIGVLYRNNQFSPEELA 85


>gnl|CDD|212146 cd11539, NTP-PPase_u2, Nucleoside Triphosphate
          Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain
          found in a group of uncharacterized proteins from
          bacteria and archaea.  The family corresponds to a
          group of uncharacterized hypothetical proteins from
          bacteria and archaea, showing a high sequence
          similarity to the dimeric 2-deoxyuridine
          5'-triphosphate nucleotidohydrolase (dUTP
          pyrophosphatase or dUTPase) and NTP-PPase MazG
          proteins. However, unlike typical tandem-domain MazG
          proteins, members in this family consist of a single
          MazG-like domain that contains a well conserved
          divalent ion-binding motif EXX[E/D].
          Length = 85

 Score = 23.7 bits (52), Expect = 5.7
 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 38 CSEDIIKNLILVVRGQFSTDELVEE 62
           +E +I+ L    RG+ + + L+EE
Sbjct: 25 MAE-LIQALSKYKRGKGNRENLIEE 48


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,332,884
Number of extensions: 246648
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 3
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)