RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12551
         (66 letters)



>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
           endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
           i.23.1.1 PDB: 1xi5_A 3iyv_A
          Length = 1630

 Score = 72.8 bits (178), Expect = 3e-17
 Identities = 41/54 (75%), Positives = 47/54 (87%), Gaps = 2/54 (3%)

Query: 9   LTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 797 QKYIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.019
 Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 7/40 (17%)

Query: 8   GLT----YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDII 43
           G+     Y+ V  +     P  L   + G      S+ ++
Sbjct: 242 GVIQLAHYV-VTAKLLGFTPGELRSYLKGAT--GHSQGLV 278



 Score = 29.6 bits (66), Expect = 0.040
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 8/42 (19%)

Query: 28   VVVGG-LLDVDCSEDIIKNL------ILVVRGQFSTDELVEE 62
             V  G L  +D   +++  +      I+ ++   S +E VE 
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE-VEG 1893


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.1 bits (60), Expect = 0.38
 Identities = 4/11 (36%), Positives = 7/11 (63%)

Query: 21  VNPSRLPVVVG 31
           ++  R+ VV G
Sbjct: 814 LDLERVIVVTG 824


>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP,
          NESG, protein structure initiative, structural
          genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
          Length = 60

 Score = 23.9 bits (51), Expect = 2.3
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 33 LLDVDCSEDIIKNLILVVRGQFSTDE 58
          LL  + + ++IK+L+  VR  + T+ 
Sbjct: 29 LLVPEVAAEVIKDLVNTVRS-YDTEN 53


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,007,246
Number of extensions: 46364
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 5
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)