RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12551
         (66 letters)



>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 42.5 bits (100), Expect = 4e-07
 Identities = 5/45 (11%), Positives = 14/45 (31%), Gaps = 2/45 (4%)

Query: 18  QSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
               N       +   L+      ++ +L++V+  +      V  
Sbjct: 215 TKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTRAVNY 257


>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB
           {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 457

 Score = 26.1 bits (57), Expect = 0.31
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 14  VVLRQSQVNPSRLPVVVGGLLDVDCSEDI 42
           V +R+  V     P+V GG      SED+
Sbjct: 110 VNVRKRSVGDKAKPIVQGGPTGSPISEDV 138


>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia
          coli [TaxId: 562]}
          Length = 60

 Score = 24.2 bits (52), Expect = 0.76
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 33 LLDVDCSEDIIKNLILVVRGQFSTDE 58
          LL  + + ++IK+L+  VR  + T+ 
Sbjct: 29 LLVPEVAAEVIKDLVNTVRS-YDTEN 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,563
Number of extensions: 8679
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 3
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)