BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12552
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 111 AHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVH 170
+H + TP++ KK + +++P+K++ IH+IN I + +++KPF+ EKI+ RI +H
Sbjct: 166 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH 225
Query: 171 AD--MESLYKSIPKDVLPEEYGGYAGDIKTINEQWMKKIESYRDWF 214
+ +SL + P D+LP EYGG ++ I ++W I D+
Sbjct: 226 GNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYL 270
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 111 AHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVH 170
+H + TP++ KK + +++P+K++ IH+IN I + + +KPF+ EKI+ RI H
Sbjct: 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERIHXH 209
Query: 171 AD--MESLYKSIPKDVLPEEYGGYAGDIKTINEQWMKKIESYRDWF 214
+ +SL + P D+LP EYGG + I ++W I D+
Sbjct: 210 GNNYKQSLLQHFP-DILPLEYGGEEFSXEDICQEWTNFIXKSEDYL 254
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 97 TLIKKFLICVQNFAAHIAKFTPTL----IKKFLICVQEAYPVKLKEIHIINASGIVDTII 152
T I F I ++NF + +L ++K + +Q+++P + K IH I+ T
Sbjct: 192 TQINGFCI-IENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTY 250
Query: 153 NLVKPFIKEKIRNRIVVHA-DMESLYKSIPKDVLPEEYGG 191
N+VKPF+K K+ R+ VH D+ Y+ I +++LP ++GG
Sbjct: 251 NVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG 290
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 97 TLIKKFLICVQNFAAHIAKFTPTL----IKKFLICVQEAYPVKLKEIHIINASGIVDTII 152
T I F I ++NF + +L ++K + +Q+++P K IH I+ T
Sbjct: 192 TQINGFCI-IENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTY 250
Query: 153 NLVKPFIKEKIRNRIVVHA-DMESLYKSIPKDVLPEEYGG 191
N+VKPF+K K+ R+ VH D+ Y+ I +++LP ++GG
Sbjct: 251 NVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG 290
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 112 HIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHA 171
H+ K +FL +E YP LK + ++ A + NL+KPF+ E R +I+V
Sbjct: 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG 221
Query: 172 D--MESLYKSIPKDVLPEEYGGYAGD 195
E L K I D +P EYGG D
Sbjct: 222 ANWKEVLLKHISPDQVPVEYGGTMTD 247
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 112 HIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHA 171
H+ K +FL +E YP LK + ++ A + NL+KPF+ E R +I+V
Sbjct: 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG 221
Query: 172 D--MESLYKSIPKDVLPEEYGGYAGD 195
E L K I D +P EYGG D
Sbjct: 222 ANWKEVLLKHISPDQVPVEYGGTMTD 247
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 112 HIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHA 171
H+ K +FL +E YP LK + ++ A + NL+KPF+ E R +I V
Sbjct: 162 HLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLG 221
Query: 172 D--MESLYKSIPKDVLPEEYGGYAGD 195
E L K I D +P EYGG D
Sbjct: 222 ANWKEVLLKHISPDQVPVEYGGTXTD 247
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 129 QEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVV--HADMESLYKSIPKDVLP 186
Q YP ++ + +IINA T L KPF+ ++I + + + L K IP + LP
Sbjct: 199 QNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258
Query: 187 EEYGGYAGDIKTINEQWMKKIESYRD 212
++GG + ++ ++ I +RD
Sbjct: 259 VKFGGKSEVDESKGGLYLSDIGPWRD 284
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 88 AAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGI 147
A ++ + + T++ I + N A H+ + IK Q YP ++ + +II++
Sbjct: 178 AGYLIETSCTVLDLKGISLSN-AYHVLSY----IKDVADISQNYYPERMGKFYIIHSPFG 232
Query: 148 VDTIINLVKPFIKEKIRNRIVV--HADMESLYKSIPKDVLPEEYGG 191
T+ +VKPF+ ++I + + + L K IP + LP +YGG
Sbjct: 233 FSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGG 278
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 88 AAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGI 147
A ++ + + T++ I + N A H+ + IK Q YP ++ + +II++
Sbjct: 178 AGYLIETSCTVLDLKGISLSN-AYHVLSY----IKDVADISQNYYPERMGKFYIIHSPFG 232
Query: 148 VDTIINLVKPFIKEKIRNRIVV--HADMESLYKSIPKDVLPEEYGG 191
T+ +VKPF+ ++I + + + L K IP + LP +YGG
Sbjct: 233 FSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGG 278
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 122 KKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHADMESLYKSIP 181
K+ L +Q YP +L + + N + T + L+ PFI R ++V E K +P
Sbjct: 223 KEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFD---EPFVKYVP 279
Query: 182 KDVLPEEYGG 191
K+ L YGG
Sbjct: 280 KNELDSLYGG 289
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 105 CVQNFAAHIAK---FTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKE 161
C ++ A H+ K FT +KK + + KL H+ ++GI+ I L P ++
Sbjct: 61 CAKHAAKHLGKLSEFTFAEVKKACLSLDAEIIRKLGPKHVAGSTGIIVAIERLSAPVVEN 120
Query: 162 KIRNRIVVHADMESL 176
+ IV A E+
Sbjct: 121 VVGREIVPRAHEETF 135
>pdb|2AFC|A Chain A, X-Ray Crystal Structure Of Protein Q8a8b0 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr9.
pdb|2AFC|B Chain B, X-Ray Crystal Structure Of Protein Q8a8b0 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr9
Length = 168
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 190 GGYA-GDIKTINEQWMKKIESYRDWFKEQE 218
GG+ G + ++++W E+YR W+K QE
Sbjct: 29 GGWGKGFVLALSKKWKXPEEAYRQWYKSQE 58
>pdb|2FG1|A Chain A, Structure Of A Protein Of Unknown Function From
Bacteroides Thetaiotaomicron
Length = 158
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 190 GGYA-GDIKTINEQWMKKIESYRDWFKEQE 218
GG+ G + ++++W E+YR W+K QE
Sbjct: 32 GGWGKGFVLALSKKWKXPEEAYRQWYKSQE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,561,924
Number of Sequences: 62578
Number of extensions: 304082
Number of successful extensions: 805
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 17
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)