Query psy12552
Match_columns 250
No_of_seqs 208 out of 1375
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:16:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1.1E-32 2.5E-37 225.2 7.5 149 17-192 6-159 (159)
2 smart00516 SEC14 Domain in hom 100.0 2E-30 4.4E-35 211.7 15.2 140 24-193 14-157 (158)
3 cd00170 SEC14 Sec14p-like lipi 100.0 1.4E-28 3E-33 197.8 13.9 149 17-192 8-157 (157)
4 KOG1471|consensus 99.9 5.4E-28 1.2E-32 220.3 9.4 152 19-196 96-260 (317)
5 KOG1470|consensus 99.9 1.1E-26 2.4E-31 211.1 13.9 151 13-194 94-244 (324)
6 PF13716 CRAL_TRIO_2: Divergen 99.6 2.7E-15 5.8E-20 122.4 4.9 136 23-193 7-144 (149)
7 KOG4406|consensus 98.5 1.1E-06 2.4E-11 82.5 10.6 133 17-183 80-213 (467)
8 PF14213 DUF4325: Domain of un 60.6 42 0.00092 23.9 6.2 51 72-153 17-69 (74)
9 PF11964 SpoIIAA-like: SpoIIAA 47.5 55 0.0012 24.3 5.4 76 46-158 11-87 (109)
10 KOG4178|consensus 47.5 28 0.00061 32.4 4.3 73 73-147 73-149 (322)
11 PF04838 Baculo_LEF5: Baculovi 45.3 58 0.0013 27.1 5.3 93 121-223 17-128 (159)
12 PF03641 Lysine_decarbox: Poss 38.7 86 0.0019 24.9 5.4 43 138-180 86-133 (133)
13 KOG1471|consensus 38.6 64 0.0014 29.1 5.2 138 11-155 100-244 (317)
14 PF00561 Abhydrolase_1: alpha/ 36.8 77 0.0017 25.7 5.1 70 74-145 3-78 (230)
15 TIGR02364 dha_pts dihydroxyace 30.8 1.9E+02 0.004 23.0 6.1 26 133-158 84-109 (125)
16 KOG1838|consensus 30.6 5.1E+02 0.011 25.1 10.8 93 27-153 122-214 (409)
17 COG0052 RpsB Ribosomal protein 30.6 1.1E+02 0.0023 27.7 5.1 69 131-202 31-110 (252)
18 TIGR00730 conserved hypothetic 28.8 1.8E+02 0.0039 24.5 6.0 61 118-180 110-175 (178)
19 cd07042 STAS_SulP_like_sulfate 24.1 2.8E+02 0.006 19.9 5.9 51 73-155 42-92 (107)
20 PRK14484 phosphotransferase ma 23.2 3.7E+02 0.0081 21.4 6.5 22 137-158 84-105 (124)
21 cd07043 STAS_anti-anti-sigma_f 22.7 2.8E+02 0.0061 19.5 5.9 52 73-156 39-90 (99)
22 PF01740 STAS: STAS domain; I 20.8 2E+02 0.0043 21.5 4.5 50 73-154 49-98 (117)
No 1
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=1.1e-32 Score=225.22 Aligned_cols=149 Identities=28% Similarity=0.417 Sum_probs=122.3
Q ss_pred eeeecCCCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcC--CCcccEEEEEecCCCCccccccccccc
Q psy12552 17 HNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEES--VGVAGDVYVFDAAIATPQNFAAHIAKF 94 (250)
Q Consensus 17 g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~--~~~~g~v~I~D~~g~s~~N~~~~~~~~ 94 (250)
+...+++|+|++||||+++|++++++ .+.+..+++|+.++++|.+++... .++.|+++|+|++|++++
T Consensus 6 ~~~~~~~g~D~~gr~v~~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~--------- 75 (159)
T PF00650_consen 6 SGPFYLHGRDKDGRPVIYIRLGRFDP-KKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLS--------- 75 (159)
T ss_dssp TSCEEEEEE-TTS-EEEEEEGTT--H-HTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HH---------
T ss_pred CeeEEECCCCCCcCEEEEEEcccCCC-CcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEe---------
Confidence 44556689999999999999999999 889999999999999999985433 468999999999999994
Q ss_pred cchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeCC--
Q psy12552 95 TPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHAD-- 172 (250)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~~-- 172 (250)
++...+++.++.+++++|++||+|++++|+||+|++++.+|+++++||++++++||+++++
T Consensus 76 -----------------~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~ 138 (159)
T PF00650_consen 76 -----------------NFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSD 138 (159)
T ss_dssp -----------------HHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTC
T ss_pred -----------------ccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcc
Confidence 4443347889999999999999999999999999999999999999999999999999964
Q ss_pred -hHHHHhhCCCCCCcccCCCC
Q psy12552 173 -MESLYKSIPKDVLPEEYGGY 192 (250)
Q Consensus 173 -~~~L~~~i~~~~LP~eyGG~ 192 (250)
.++|.++||+++||.+|||+
T Consensus 139 ~~~~l~~~i~~~~lP~~~GG~ 159 (159)
T PF00650_consen 139 WKAKLKEYIDPEQLPVEYGGT 159 (159)
T ss_dssp HCHHHCCCSTGGGSBGGGTSS
T ss_pred cHHHHHhhCCHhHCchhcCCC
Confidence 26899999999999999996
No 2
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.97 E-value=2e-30 Score=211.69 Aligned_cols=140 Identities=28% Similarity=0.471 Sum_probs=132.2
Q ss_pred CCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhh--cCCCcccEEEEEecCCCCccccccccccccchhhhH
Q psy12552 24 GLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKE--ESVGVAGDVYVFDAAIATPQNFAAHIAKFTPTLIKK 101 (250)
Q Consensus 24 g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~--~~~~~~g~v~I~D~~g~s~~N~~~~~~~~~~~~~~~ 101 (250)
|+|++||||++++++++++ +..+.++++|++++.+|.++.. ++.++.|+++|+|++|+++
T Consensus 14 g~D~~GrpV~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~----------------- 75 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDL-KSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSM----------------- 75 (158)
T ss_pred CCCCCcCEEEEEecccccc-CcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCc-----------------
Confidence 7999999999999999998 8999999999999999999876 5566899999999999999
Q ss_pred HHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeCC--hHHHHhh
Q psy12552 102 FLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHAD--MESLYKS 179 (250)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~~--~~~L~~~ 179 (250)
+| ++++.+|+++..++++||+|++++||||+|++++++|+++++|+++++++||+++++ .++|.++
T Consensus 76 ---------~~---~~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~ 143 (158)
T smart00516 76 ---------SN---PDLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEY 143 (158)
T ss_pred ---------cc---ccHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhh
Confidence 44 567899999999999999999999999999999999999999999999999999986 8999999
Q ss_pred CCCCCCcccCCCCC
Q psy12552 180 IPKDVLPEEYGGYA 193 (250)
Q Consensus 180 i~~~~LP~eyGG~~ 193 (250)
+|+++||++|||++
T Consensus 144 i~~~~lP~~~GG~~ 157 (158)
T smart00516 144 IDPEQLPEELGGTL 157 (158)
T ss_pred CCHhhCcHhhCCCC
Confidence 99999999999986
No 3
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.96 E-value=1.4e-28 Score=197.85 Aligned_cols=149 Identities=34% Similarity=0.508 Sum_probs=133.1
Q ss_pred eeeecCCCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccccccccccc
Q psy12552 17 HNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIAKFTP 96 (250)
Q Consensus 17 g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~~~~~ 96 (250)
+.+...+|+|++||||++++++..++-...+..+.+++.++.+|..+.++..+..|+++|+|++|+++
T Consensus 8 ~~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~------------ 75 (157)
T cd00170 8 GKVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSL------------ 75 (157)
T ss_pred ecccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCCh------------
Confidence 35555566899999999999996555134456899999999999999888776789999999999999
Q ss_pred hhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeCC-hHH
Q psy12552 97 TLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHAD-MES 175 (250)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~~-~~~ 175 (250)
+++. .+++.+|+++..++++||+|++++|+||+|++++.+|+++++|+++++++||+++++ .++
T Consensus 76 --------------~~~~-~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~ 140 (157)
T cd00170 76 --------------SHLL-PDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEE 140 (157)
T ss_pred --------------hccc-hhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHH
Confidence 4554 567889999999999999999999999999999999999999999999999999988 899
Q ss_pred HHhhCCCCCCcccCCCC
Q psy12552 176 LYKSIPKDVLPEEYGGY 192 (250)
Q Consensus 176 L~~~i~~~~LP~eyGG~ 192 (250)
|.+++|+++||.+|||+
T Consensus 141 L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 141 LLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHhhCChhhCcHhhCCC
Confidence 99999999999999996
No 4
>KOG1471|consensus
Probab=99.95 E-value=5.4e-28 Score=220.28 Aligned_cols=152 Identities=39% Similarity=0.630 Sum_probs=131.4
Q ss_pred eecCCCCCCCCCeEEEEecCCCCc---ccCCC--------HHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCcccc
Q psy12552 19 STPMPGLTPNGRRVIIMRASDLDQ---VLSAD--------AATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNF 87 (250)
Q Consensus 19 ~~~l~g~D~~Gr~Vi~~r~~~~d~---~~~~~--------~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~ 87 (250)
...++|.|+.|+||.+.+.+..+. +.... ..+..+...+.+|........+++|++.|+|++|+++
T Consensus 96 ~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~--- 172 (317)
T KOG1471|consen 96 PQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSL--- 172 (317)
T ss_pred cccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcc---
Confidence 345678899999999999888876 22233 3445566666666666666667999999999999999
Q ss_pred ccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcE
Q psy12552 88 AAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRI 167 (250)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri 167 (250)
+|+.+..++.+++++.++|++||+|++++||||+|++|+++|+++||||+++|++||
T Consensus 173 -----------------------~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki 229 (317)
T KOG1471|consen 173 -----------------------SHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKI 229 (317)
T ss_pred -----------------------hhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhh
Confidence 888889999999999999999999999999999999999999999999999999999
Q ss_pred E-EeC-ChHHHHhhCCCCCCcccCCCCCCCh
Q psy12552 168 V-VHA-DMESLYKSIPKDVLPEEYGGYAGDI 196 (250)
Q Consensus 168 ~-~~~-~~~~L~~~i~~~~LP~eyGG~~~~~ 196 (250)
+ +++ +.++|+++||+++||.+|||++++.
T Consensus 230 ~~~~~~~~~~L~k~i~~~~LP~~yGG~~~~~ 260 (317)
T KOG1471|consen 230 HVLHSKDKESLLKYIPPEVLPEEYGGTCGDL 260 (317)
T ss_pred eecCCCchhhhhhhCCHhhCccccCCCcccc
Confidence 9 554 4999999999999999999999876
No 5
>KOG1470|consensus
Probab=99.94 E-value=1.1e-26 Score=211.15 Aligned_cols=151 Identities=20% Similarity=0.288 Sum_probs=139.8
Q ss_pred eccceeeecCCCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccccccc
Q psy12552 13 SKSVHNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIA 92 (250)
Q Consensus 13 ~l~~g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~ 92 (250)
.++.|.++.+ |.|++||||+|+|+....+ ++.+..+..|++++++|.++...+.+..++++++|++|+|++|+|.
T Consensus 94 e~~tGK~yi~-G~D~~gRPVl~~~~~~~~q-n~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~--- 168 (324)
T KOG1470|consen 94 ELETGKAYIL-GHDKDGRPVLYLRPRPHRQ-NTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDI--- 168 (324)
T ss_pred HhhcCcEEEe-cccCCCCeEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCc---
Confidence 4678889887 7999999999999888888 8899999999999999999988887788999999999999988654
Q ss_pred cccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeCC
Q psy12552 93 KFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHAD 172 (250)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~~ 172 (250)
...+.++.++|++||+||+..+++|+|++|..+|+++|||++++|++||.|..+
T Consensus 169 --------------------------~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~ 222 (324)
T KOG1470|consen 169 --------------------------KFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP 222 (324)
T ss_pred --------------------------HHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecC
Confidence 467889999999999999999999999999999999999999999999999977
Q ss_pred hHHHHhhCCCCCCcccCCCCCC
Q psy12552 173 MESLYKSIPKDVLPEEYGGYAG 194 (250)
Q Consensus 173 ~~~L~~~i~~~~LP~eyGG~~~ 194 (250)
.+.+.++||+++||..|||+..
T Consensus 223 ~~~l~~~~d~~~l~s~~GG~~~ 244 (324)
T KOG1470|consen 223 KDDLSEYFDESQLPSLFGGKLL 244 (324)
T ss_pred hhHHHhhCCccccchhhCCCcc
Confidence 7789999999999999999763
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.56 E-value=2.7e-15 Score=122.45 Aligned_cols=136 Identities=24% Similarity=0.329 Sum_probs=96.2
Q ss_pred CCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccccccccccchhhhHH
Q psy12552 23 PGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIAKFTPTLIKKF 102 (250)
Q Consensus 23 ~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~ 102 (250)
.|+|++||||+++...+. + ... +.-++..|++..+..+ ....++++|+|+++++..|
T Consensus 7 gG~d~~g~pV~~~~~~~~-~-~~~---~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~~---------------- 63 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-P-SSD---DLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRSS---------------- 63 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C--TT---HHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GGG----------------
T ss_pred cccCCCcCEEEEEECCcC-c-chh---hHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCcccc----------------
Confidence 579999999999998887 5 333 6666666666654333 2246799999999998743
Q ss_pred HHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH-HHHhhcccccc-cCcEEEeCChHHHHhhC
Q psy12552 103 LICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTII-NLVKPFIKEKI-RNRIVVHADMESLYKSI 180 (250)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~-~lvk~fL~~k~-~~ri~~~~~~~~L~~~i 180 (250)
+.+.+.++++...+...|+.++++++|+|++++++.+. .+.+++.+++. .++|.+..+.++|.++|
T Consensus 64 ------------~~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i 131 (149)
T PF13716_consen 64 ------------EPSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHI 131 (149)
T ss_dssp ---------------HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTS
T ss_pred ------------CCchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhC
Confidence 23456788999999999999999999999999999999 66678889998 99999999999999999
Q ss_pred CCCCCcccCCCCC
Q psy12552 181 PKDVLPEEYGGYA 193 (250)
Q Consensus 181 ~~~~LP~eyGG~~ 193 (250)
|+++||.+.||+.
T Consensus 132 ~~~qL~~~lp~~~ 144 (149)
T PF13716_consen 132 DPSQLPESLPGVL 144 (149)
T ss_dssp GGGG------HHH
T ss_pred CHHHhcccCCCEE
Confidence 9999999999776
No 7
>KOG4406|consensus
Probab=98.47 E-value=1.1e-06 Score=82.52 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=104.9
Q ss_pred eeeecCCC-CCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCcccccccccccc
Q psy12552 17 HNSTPMPG-LTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIAKFT 95 (250)
Q Consensus 17 g~~~~l~g-~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~~~~ 95 (250)
++..+..+ .|+.||.|+.+-+.++.+.++.+-..++++..+.+|..++++ ++.++=-.|+...|..
T Consensus 80 ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~D------Yt~vYfh~gl~s~nkp------- 146 (467)
T KOG4406|consen 80 EILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVEND------YTLVYFHHGLPSDNKP------- 146 (467)
T ss_pred heeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhcc------ceeeehhcCCcccccc-------
Confidence 34444444 699999999999999876556666668999999999887654 6677777777765522
Q ss_pred chhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeCChHH
Q psy12552 96 PTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHADMES 175 (250)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~~~~~ 175 (250)
..+.+.+...-+..+|--.++.+|+|.+-|+..++|+++||+++.|..+||+-.++.++
T Consensus 147 ---------------------~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lse 205 (467)
T KOG4406|consen 147 ---------------------YLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSE 205 (467)
T ss_pred ---------------------hHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHH
Confidence 23444555555566688889999999999999999999999999999999999988999
Q ss_pred HHhhCCCC
Q psy12552 176 LYKSIPKD 183 (250)
Q Consensus 176 L~~~i~~~ 183 (250)
|.++++-+
T Consensus 206 L~~~l~l~ 213 (467)
T KOG4406|consen 206 LFEALKLN 213 (467)
T ss_pred HHHhhhhh
Confidence 99887633
No 8
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=60.59 E-value=42 Score=23.87 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.8
Q ss_pred cEEEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcc--cccceEEEEeCChHHH
Q psy12552 72 GDVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYP--VKLKEIHIINASGIVD 149 (250)
Q Consensus 72 g~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP--~rl~~i~iiN~P~~~~ 149 (250)
|-.+++|++|++. ++.+++-.++.-+...|| ..-+++.++|++....
T Consensus 17 ~~~V~lDF~gv~~-------------------------------~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~ 65 (74)
T PF14213_consen 17 GEKVVLDFEGVES-------------------------------ITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIK 65 (74)
T ss_pred CCeEEEECCCccc-------------------------------ccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHH
Confidence 4448999999976 344555555555555555 3456778888777665
Q ss_pred HHHH
Q psy12552 150 TIIN 153 (250)
Q Consensus 150 ~~~~ 153 (250)
...+
T Consensus 66 ~~I~ 69 (74)
T PF14213_consen 66 EMIK 69 (74)
T ss_pred HHHH
Confidence 5443
No 9
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=47.55 E-value=55 Score=24.25 Aligned_cols=76 Identities=11% Similarity=0.027 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecC-CCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHH
Q psy12552 46 ADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAA-IATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKF 124 (250)
Q Consensus 46 ~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~-g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~ 124 (250)
++.+++.+ ..-.++..+.. ...+.+++|+. ++.- ++++.....
T Consensus 11 ~t~ed~~~-~~~~~~~~~~~----~~~~~ll~d~~~~~~~-------------------------------~~~~a~~~~ 54 (109)
T PF11964_consen 11 LTEEDYKE-LLPALEELIAD----HGKIRLLVDLRRDFEG-------------------------------WSPEARWED 54 (109)
T ss_dssp E-HHHHHH-HHHHHHHHHTT----SSSEEEEEEEC-CEEE-------------------------------EHHHHHHHH
T ss_pred eCHHHHHH-HHHHHHHHHhc----CCceEEEEEecCccCC-------------------------------CCHHHHHHH
Confidence 45666666 44444444432 34578889988 6532 233444444
Q ss_pred HHHHHhhcccccceEEEEeCChHHHHHHHHHhhc
Q psy12552 125 LICVQEAYPVKLKEIHIINASGIVDTIINLVKPF 158 (250)
Q Consensus 125 ~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~f 158 (250)
..+... ....++++=+|..+.+...+.+++.++
T Consensus 55 ~~~~~~-~~~~~~r~AvV~~~~~~~~~~~~~~~~ 87 (109)
T PF11964_consen 55 AKFGLK-HLKHFRRIAVVGDSEWIRMIANFFAAF 87 (109)
T ss_dssp HHHHCC-CCGGEEEEEEE-SSCCCHHHHHHHHHH
T ss_pred HHhchh-hhcccCEEEEEECcHHHHHHHHHHHhc
Confidence 444444 788899999999999999999999886
No 10
>KOG4178|consensus
Probab=47.53 E-value=28 Score=32.43 Aligned_cols=73 Identities=14% Similarity=-0.005 Sum_probs=48.5
Q ss_pred EEEEEecCCCCccccccccccccch----hhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChH
Q psy12552 73 DVYVFDAAIATPQNFAAHIAKFTPT----LIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGI 147 (250)
Q Consensus 73 ~v~I~D~~g~s~~N~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~ 147 (250)
-++-.|++|++.+-....+..||.+ +|..++-+... +...-.....=.-+...+.-.||+|++++..+|.|..
T Consensus 73 rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~Lg~--~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 73 RVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHLGL--KKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred EEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHhcc--ceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 4678999999998877777778765 45555555542 1111111111112355677889999999999999998
No 11
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=45.33 E-value=58 Score=27.12 Aligned_cols=93 Identities=18% Similarity=0.340 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcccccc--eEEEEeCChHHHHHHHHHhhcccc--cccCcEEEe------------CC---hHHHHhhCC
Q psy12552 121 IKKFLICVQEAYPVKLK--EIHIINASGIVDTIINLVKPFIKE--KIRNRIVVH------------AD---MESLYKSIP 181 (250)
Q Consensus 121 ~k~~~~~~q~~yP~rl~--~i~iiN~P~~~~~~~~lvk~fL~~--k~~~ri~~~------------~~---~~~L~~~i~ 181 (250)
-+.++..+-..||..|+ -..++|+.-.|..+|+-+ |-.+. +-|+.|+.- ++ +++|.+.+.
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRLs~dcI~kL~~nT~NdfKLY~Elf~~i~ 95 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRLSEDCIEKLFVNTINDFKLYEELFDMID 95 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 46788999999999999 899999999999999877 55555 455556551 12 678888887
Q ss_pred CCCCcccCCCCCCChhHHHHHHHHHHHHhHHHHHHhcccccc
Q psy12552 182 KDVLPEEYGGYAGDIKTINEQWMKKIESYRDWFKEQETVKAD 223 (250)
Q Consensus 182 ~~~LP~eyGG~~~~~~~l~~~w~~~l~~~~~~~~~~~~~~~d 223 (250)
.+.++. ++| -+ ...+++.+...|......-.-|
T Consensus 96 ~~~~~~----~CP--Ce---ll~~r~~~~~~Yv~~l~~K~FD 128 (159)
T PF04838_consen 96 DNKLKE----KCP--CE---LLQQRLNEIKSYVNNLNNKNFD 128 (159)
T ss_pred ccCCCC----CCC--HH---HHHHHHHHHHHHHHHhccccCC
Confidence 544322 233 22 3344555556665555443434
No 12
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=38.66 E-value=86 Score=24.88 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=35.7
Q ss_pred eEEEEeCChHHHHHHHHH-----hhcccccccCcEEEeCChHHHHhhC
Q psy12552 138 EIHIINASGIVDTIINLV-----KPFIKEKIRNRIVVHADMESLYKSI 180 (250)
Q Consensus 138 ~i~iiN~P~~~~~~~~lv-----k~fL~~k~~~ri~~~~~~~~L~~~i 180 (250)
.+.++|...+.+-++..+ ..|+++...+.+.+.++.+++.++|
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 699999887777777765 5688999999999999999988764
No 13
>KOG1471|consensus
Probab=38.58 E-value=64 Score=29.08 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=90.9
Q ss_pred eeeccceeeecCCCCCCCCCeEEEEecCCCCc--ccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccc
Q psy12552 11 FESKSVHNSTPMPGLTPNGRRVIIMRASDLDQ--VLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFA 88 (250)
Q Consensus 11 ~~~l~~g~~~~l~g~D~~Gr~Vi~~r~~~~d~--~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~ 88 (250)
......|..+++++.++.|+.+++.+.+..++ ..-.......+..+-..........++...+.=+-++..-.+.+
T Consensus 100 ~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~-- 177 (317)
T KOG1471|consen 100 HGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLK-- 177 (317)
T ss_pred cccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHH--
Confidence 34456788999999999999999999999877 12334444443332222222255555556666666666666632
Q ss_pred cccccccchhhhHHHHhhhhhh-hhhccc----CHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH
Q psy12552 89 AHIAKFTPTLIKKFLICVQNFA-AHIAKF----TPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLV 155 (250)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~----~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lv 155 (250)
++++++|+.+...+..| ..+..+ .|..+..+...+....+++.+.-..+........+...+
T Consensus 178 -----~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i 244 (317)
T KOG1471|consen 178 -----PAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYI 244 (317)
T ss_pred -----HHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhC
Confidence 46889999999888655 333322 467778888888888888776666666666666665554
No 14
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=36.83 E-value=77 Score=25.71 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=42.8
Q ss_pred EEEEecCCCCcccc--ccccccccchhhhHHHHhhhhhhh--hh--cccCHHHHHHHHHHHHhhcccccceEEEEeCC
Q psy12552 74 VYVFDAAIATPQNF--AAHIAKFTPTLIKKFLICVQNFAA--HI--AKFTPTLIKKFLICVQEAYPVKLKEIHIINAS 145 (250)
Q Consensus 74 v~I~D~~g~s~~N~--~~~~~~~~~~~~~~~~~~~~~~~~--~l--~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P 145 (250)
|+++|..|.+.+-- +...+.++...+-+.+..+....+ .+ .-.+.+ -.+...+...||++++++..++++
T Consensus 3 vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~G--g~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 3 VILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMG--GMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp EEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHH--HHHHHHHHHHSGGGEEEEEEESES
T ss_pred EEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCC--hHHHHHHHHHCchhhcCcEEEeee
Confidence 78899999988652 144555666666555555543221 11 111222 223445566799999999999998
No 15
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=30.77 E-value=1.9e+02 Score=23.01 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.1
Q ss_pred ccccceEEEEeCChHHHHHHHHHhhc
Q psy12552 133 PVKLKEIHIINASGIVDTIINLVKPF 158 (250)
Q Consensus 133 P~rl~~i~iiN~P~~~~~~~~lvk~f 158 (250)
+.+.+.|..+|.|-+...+...+..-
T Consensus 84 ~~~~~~v~g~nlPlvega~~aa~~~~ 109 (125)
T TIGR02364 84 DEDRDKVHLVDAPLVEGAFAAAVEAQ 109 (125)
T ss_pred cccccEEEEechhHHHHHHHHHHHHc
Confidence 35568899999999999988877654
No 16
>KOG1838|consensus
Probab=30.56 E-value=5.1e+02 Score=25.10 Aligned_cols=93 Identities=8% Similarity=0.054 Sum_probs=56.4
Q ss_pred CCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccccccccccchhhhHHHHhh
Q psy12552 27 PNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICV 106 (250)
Q Consensus 27 ~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~ 106 (250)
....|++++-.|-. .-+.+..+|........ ..=-++|+.-+|+.-..+...
T Consensus 122 ~~~~P~vvilpGlt----g~S~~~YVr~lv~~a~~--------~G~r~VVfN~RG~~g~~LtTp---------------- 173 (409)
T KOG1838|consen 122 DGTDPIVVILPGLT----GGSHESYVRHLVHEAQR--------KGYRVVVFNHRGLGGSKLTTP---------------- 173 (409)
T ss_pred CCCCcEEEEecCCC----CCChhHHHHHHHHHHHh--------CCcEEEEECCCCCCCCccCCC----------------
Confidence 35558888888863 34566778876544321 123578999999665433321
Q ss_pred hhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHH
Q psy12552 107 QNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIIN 153 (250)
Q Consensus 107 ~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~ 153 (250)
....-.....++.+++.+..-||.+ +++.+--+.-..++++
T Consensus 174 ----r~f~ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~n 214 (409)
T KOG1838|consen 174 ----RLFTAGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTN 214 (409)
T ss_pred ----ceeecCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHH
Confidence 2222234567788888888888877 5566655555555544
No 17
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=30.55 E-value=1.1e+02 Score=27.66 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=46.3
Q ss_pred hcccccceEEEEeCChHH---HHHHHHHhhcccccccCcEEEeCC-------hHHHHhhCCCCCCcccC-CCCCCChhHH
Q psy12552 131 AYPVKLKEIHIINASGIV---DTIINLVKPFIKEKIRNRIVVHAD-------MESLYKSIPKDVLPEEY-GGYAGDIKTI 199 (250)
Q Consensus 131 ~yP~rl~~i~iiN~P~~~---~~~~~lvk~fL~~k~~~ri~~~~~-------~~~L~~~i~~~~LP~ey-GG~~~~~~~l 199 (250)
.|.+| .+|||||.-... +.++++++..-.. -.+|.|+++ ..+..+....-.+...| ||+.....+.
T Consensus 31 If~~R-ngihIIDL~kT~~~l~~A~~~v~~~~~~--~g~ILfVgTK~~a~~~V~~~A~r~g~~yV~~RwLgG~LTN~~ti 107 (252)
T COG0052 31 IFGER-NGIHIIDLQKTLERLREAYKFLRRIAAN--GGKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTI 107 (252)
T ss_pred ceeec-CCcEEEEHHHHHHHHHHHHHHHHHHHcC--CCEEEEEechHHHHHHHHHHHHHhCCceecCcccCccccCchhH
Confidence 48999 999999977654 4455555554321 357888876 34455667767777665 9999876654
Q ss_pred HHH
Q psy12552 200 NEQ 202 (250)
Q Consensus 200 ~~~ 202 (250)
...
T Consensus 108 ~~s 110 (252)
T COG0052 108 RKS 110 (252)
T ss_pred HHH
Confidence 433
No 18
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=28.83 E-value=1.8e+02 Score=24.49 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH-----hhcccccccCcEEEeCChHHHHhhC
Q psy12552 118 PTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLV-----KPFIKEKIRNRIVVHADMESLYKSI 180 (250)
Q Consensus 118 ~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lv-----k~fL~~k~~~ri~~~~~~~~L~~~i 180 (250)
.+.+-.++.+.|-... -+.+.++|...+++.+..++ ..|++++-++.+.+.++.+++.+++
T Consensus 110 L~El~e~~~~~qlg~~--~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i 175 (178)
T TIGR00730 110 LEELFEVLTWAQLGIH--QKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQV 175 (178)
T ss_pred HHHHHHHHHHHHcCCC--CCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHH
Confidence 3444445555554433 35799999887778777654 4577888888899998888888776
No 19
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=24.10 E-value=2.8e+02 Score=19.88 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=31.1
Q ss_pred EEEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH
Q psy12552 73 DVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTII 152 (250)
Q Consensus 73 ~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~ 152 (250)
..+|+|+++++. ++-+.+..+..+.+..-.. =..+.+.|++.-+..++
T Consensus 42 ~~lilD~~~v~~-------------------------------iDss~~~~L~~~~~~~~~~-~~~~~l~~~~~~~~~~l 89 (107)
T cd07042 42 KVVILDLSAVNF-------------------------------IDSTAAEALEELVKDLRKR-GVELYLAGLNPQVRELL 89 (107)
T ss_pred eEEEEECCCCch-------------------------------hhHHHHHHHHHHHHHHHHC-CCEEEEecCCHHHHHHH
Confidence 568899999987 2333444444444333332 36788889988666555
Q ss_pred HHH
Q psy12552 153 NLV 155 (250)
Q Consensus 153 ~lv 155 (250)
...
T Consensus 90 ~~~ 92 (107)
T cd07042 90 ERA 92 (107)
T ss_pred HHc
Confidence 443
No 20
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=23.17 E-value=3.7e+02 Score=21.40 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=17.1
Q ss_pred ceEEEEeCChHHHHHHHHHhhc
Q psy12552 137 KEIHIINASGIVDTIINLVKPF 158 (250)
Q Consensus 137 ~~i~iiN~P~~~~~~~~lvk~f 158 (250)
++++++++|-.=..+...+...
T Consensus 84 ~~v~~~daPlVEGa~~Aav~~~ 105 (124)
T PRK14484 84 KKIIIIDAPIVEGAFTAAVLLS 105 (124)
T ss_pred CcEEEECCcHHHHHHHHHHHHc
Confidence 8899999998877776666543
No 21
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=22.68 E-value=2.8e+02 Score=19.49 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=33.4
Q ss_pred EEEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH
Q psy12552 73 DVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTII 152 (250)
Q Consensus 73 ~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~ 152 (250)
-.+++|+++++. ++.+.+..+..+.+.+-.. =..+.+++.|.-+..++
T Consensus 39 ~~viid~~~v~~-------------------------------iDs~g~~~L~~l~~~~~~~-g~~v~i~~~~~~~~~~l 86 (99)
T cd07043 39 RRLVLDLSGVTF-------------------------------IDSSGLGVLLGAYKRARAA-GGRLVLVNVSPAVRRVL 86 (99)
T ss_pred CEEEEECCCCCE-------------------------------EcchhHHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHH
Confidence 458899999887 2333444444444444433 36699999998777777
Q ss_pred HHHh
Q psy12552 153 NLVK 156 (250)
Q Consensus 153 ~lvk 156 (250)
..+.
T Consensus 87 ~~~g 90 (99)
T cd07043 87 ELTG 90 (99)
T ss_pred HHhC
Confidence 6553
No 22
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.79 E-value=2e+02 Score=21.49 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=32.3
Q ss_pred EEEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH
Q psy12552 73 DVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTII 152 (250)
Q Consensus 73 ~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~ 152 (250)
-.+|+||++++. ++-+.+..+..+.+++- .+=..++++|++.-+...+
T Consensus 49 ~~vIlD~s~v~~-------------------------------iDssgi~~L~~~~~~~~-~~g~~~~l~~~~~~v~~~l 96 (117)
T PF01740_consen 49 KNVILDMSGVSF-------------------------------IDSSGIQALVDIIKELR-RRGVQLVLVGLNPDVRRIL 96 (117)
T ss_dssp SEEEEEETTESE-------------------------------ESHHHHHHHHHHHHHHH-HTTCEEEEESHHHHHHHHH
T ss_pred eEEEEEEEeCCc-------------------------------CCHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHH
Confidence 569999999977 23334444444444433 4556789999888777665
Q ss_pred HH
Q psy12552 153 NL 154 (250)
Q Consensus 153 ~l 154 (250)
..
T Consensus 97 ~~ 98 (117)
T PF01740_consen 97 ER 98 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
Done!