Query psy12552
Match_columns 250
No_of_seqs 208 out of 1375
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:17:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r5l_A Alpha-TTP, protein (alp 100.0 8.8E-40 3E-44 287.5 16.3 179 13-219 79-259 (262)
2 3hx3_A Retinaldehyde-binding p 100.0 4.5E-36 1.6E-40 273.2 13.0 168 13-209 138-306 (316)
3 1aua_A Phosphatidylinositol tr 100.0 2.6E-31 8.9E-36 238.5 12.8 154 16-197 102-269 (296)
4 1olm_A SEC14-like protein 2; l 100.0 9.4E-31 3.2E-35 244.5 10.7 148 22-196 88-248 (403)
5 3q8g_A CRAL-TRIO domain-contai 100.0 1.1E-29 3.6E-34 231.8 10.3 152 17-196 118-283 (320)
6 3pg7_A Neurofibromin; SEC lipi 99.2 9.8E-12 3.3E-16 109.9 5.6 133 18-185 11-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 2.1E-10 7.3E-15 103.1 5.9 135 16-185 28-163 (290)
8 2q3l_A Uncharacterized protein 67.3 25 0.00086 26.5 7.8 31 134-164 83-113 (126)
9 3t6o_A Sulfate transporter/ant 38.4 1.1E+02 0.0038 22.1 7.2 70 73-179 49-118 (121)
10 3sbx_A Putative uncharacterize 37.6 35 0.0012 28.0 4.4 61 120-182 124-189 (189)
11 3qua_A Putative uncharacterize 34.2 41 0.0014 27.8 4.2 62 119-182 132-198 (199)
12 2ka5_A Putative anti-sigma fac 34.0 1.4E+02 0.0046 21.8 8.7 70 73-180 53-122 (125)
13 4hyl_A Stage II sporulation pr 33.7 1.1E+02 0.0037 21.7 6.2 70 74-181 44-113 (117)
14 1th8_B Anti-sigma F factor ant 29.4 1.4E+02 0.005 20.7 6.5 69 74-180 45-113 (116)
15 2a33_A Hypothetical protein; s 24.7 86 0.0029 26.0 4.7 61 120-182 125-190 (215)
16 1sbo_A Putative anti-sigma fac 20.1 2.2E+02 0.0074 19.5 6.8 50 74-155 46-95 (110)
17 2i3f_A Glycolipid transfer-lik 20.0 2.3E+02 0.0077 23.7 6.4 64 99-181 100-163 (224)
No 1
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=8.8e-40 Score=287.53 Aligned_cols=179 Identities=26% Similarity=0.472 Sum_probs=168.9
Q ss_pred eccceeeecCCCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccccccc
Q psy12552 13 SKSVHNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIA 92 (250)
Q Consensus 13 ~l~~g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~ 92 (250)
.++.|+..+++|+|++||||+++|++++|+ +.++..+++|+.++++|.++.+++.|+.|+++|+|++|+|+
T Consensus 79 ~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~-~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~-------- 149 (262)
T 1r5l_A 79 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDP-KVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF-------- 149 (262)
T ss_dssp HHHTTCEEECSSCCTTCCEEEEEEGGGCCT-TTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCH--------
T ss_pred HHHcCCccCCCCcCCCCCEEEEEeccccCc-ccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCH--------
Confidence 456788889999999999999999999999 88999999999999999988877767899999999999999
Q ss_pred cccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeCC
Q psy12552 93 KFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHAD 172 (250)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~~ 172 (250)
+|+.+++++.+|+++.++|++||+|++++||||+|++|+.+|+++||||+++|++||+++++
T Consensus 150 ------------------~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~ 211 (262)
T 1r5l_A 150 ------------------SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN 211 (262)
T ss_dssp ------------------HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS
T ss_pred ------------------HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC
Confidence 78888899999999999999999999999999999999999999999999999999999975
Q ss_pred --hHHHHhhCCCCCCcccCCCCCCChhHHHHHHHHHHHHhHHHHHHhcc
Q psy12552 173 --MESLYKSIPKDVLPEEYGGYAGDIKTINEQWMKKIESYRDWFKEQET 219 (250)
Q Consensus 173 --~~~L~~~i~~~~LP~eyGG~~~~~~~l~~~w~~~l~~~~~~~~~~~~ 219 (250)
.++|.++|| ++||++|||++++++++++.|.++++++++||.+.+.
T Consensus 212 ~~~~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w~~~l~~~~~~~~~~~~ 259 (262)
T 1r5l_A 212 NYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLSSISE 259 (262)
T ss_dssp SCHHHHHHHST-TTSCGGGTCSSCCHHHHHHHHHHHHHHTHHHHHHTCC
T ss_pred CcHHHHHHHhh-hhCcHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999 9999999999999999999999999999999998754
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=4.5e-36 Score=273.15 Aligned_cols=168 Identities=20% Similarity=0.339 Sum_probs=156.5
Q ss_pred eccceeeecCCCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccccccc
Q psy12552 13 SKSVHNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIA 92 (250)
Q Consensus 13 ~l~~g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~ 92 (250)
.++.|+.+++||+|++||||+++|++++|+ +.++..+++|++++++|.++.++..++.|+++|+|++|+|+
T Consensus 138 ~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~-~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl-------- 208 (316)
T 3hx3_A 138 TIEAGYPGVLSSRDKYGRVVMLFNIENWQS-QEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTM-------- 208 (316)
T ss_dssp HHHTTSSEECSSCCTTSCEEEEEECTTCCT-TTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCH--------
T ss_pred HHHcCCccccCCCCCCCCEEEEEecccCCC-CCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCH--------
Confidence 467899999999999999999999999999 99999999999999999998877677899999999999999
Q ss_pred cccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeC-
Q psy12552 93 KFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHA- 171 (250)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~- 171 (250)
+|+.+++++.+|+++.++|++||+|++++||||+|++|+.+|+++||||+++|++||++|+
T Consensus 209 ------------------~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~ 270 (316)
T 3hx3_A 209 ------------------QQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD 270 (316)
T ss_dssp ------------------HHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET
T ss_pred ------------------HHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC
Confidence 8888899999999999999999999999999999999999999999999999999999996
Q ss_pred ChHHHHhhCCCCCCcccCCCCCCChhHHHHHHHHHHHH
Q psy12552 172 DMESLYKSIPKDVLPEEYGGYAGDIKTINEQWMKKIES 209 (250)
Q Consensus 172 ~~~~L~~~i~~~~LP~eyGG~~~~~~~l~~~w~~~l~~ 209 (250)
+.++|.++||+++||++|||++++.+ ++.|.+.+..
T Consensus 271 ~~~~L~~~I~~~~LP~eyGG~~~~~d--~~~~~~~l~~ 306 (316)
T 3hx3_A 271 DLSGFYQEIDENILPSDFGGTLPKYD--GKAVAEQLFG 306 (316)
T ss_dssp CCHHHHHHSCGGGSBGGGTSSBCCCC--HHHHHHHHC-
T ss_pred CHHHHHhhCCHhhCcHhhCCCCCCcC--hhHHHHHHcC
Confidence 48999999999999999999998666 7788877654
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.97 E-value=2.6e-31 Score=238.47 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=135.3
Q ss_pred ceeeecCCCCCCCCCeEEEEecCCCCcccC----CCHHHHHHHHHHHHHHHHhhc--------CCCcccEEEEEecCCCC
Q psy12552 16 VHNSTPMPGLTPNGRRVIIMRASDLDQVLS----ADAATGMKLVLMIGDIRLKEE--------SVGVAGDVYVFDAAIAT 83 (250)
Q Consensus 16 ~g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~----~~~~~~~r~~~~~~e~~l~~~--------~~~~~g~v~I~D~~g~s 83 (250)
..+...++|+|++||||+++|++++|+ +. .+..+++|++++.+|.++... ..++.|+++|+|++|++
T Consensus 102 ~~~~~~~~g~Dk~GrpV~i~~~g~~d~-~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s 180 (296)
T 1aua_A 102 KFYPQYYHKTDKDGRPVYFEELGAVNL-HEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS 180 (296)
T ss_dssp GGSCCEEEEECTTSCEEEEECGGGCCH-HHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC
T ss_pred HhCCceecccCCCCCEEEEEeeccCCh-HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCC
Confidence 334445689999999999999999987 43 688999999999999876531 23478999999999999
Q ss_pred ccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccc
Q psy12552 84 PQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKI 163 (250)
Q Consensus 84 ~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~ 163 (250)
+ +|+.++ ++.+|.++.++|++||+|++++||||+|++|+++|+++||||+++|
T Consensus 181 ~--------------------------~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t 233 (296)
T 1aua_A 181 I--------------------------SSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT 233 (296)
T ss_dssp H--------------------------HHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHH
T ss_pred H--------------------------HHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhh
Confidence 9 666555 7889999999999999999999999999999999999999999999
Q ss_pred cCcEEEeCC--hHHHHhhCCCCCCcccCCCCCCChh
Q psy12552 164 RNRIVVHAD--MESLYKSIPKDVLPEEYGGYAGDIK 197 (250)
Q Consensus 164 ~~ri~~~~~--~~~L~~~i~~~~LP~eyGG~~~~~~ 197 (250)
++||+|+++ .++|.++||+++||++|||+++...
T Consensus 234 ~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~ 269 (296)
T 1aua_A 234 VSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDE 269 (296)
T ss_dssp HTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred cceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence 999999976 6889999999999999999996543
No 4
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.97 E-value=9.4e-31 Score=244.46 Aligned_cols=148 Identities=28% Similarity=0.374 Sum_probs=135.3
Q ss_pred CCCCCCCCCeEEEEecCCCCccc----CCCHHHHHHHHHHHHHHHHhhcCC-------CcccEEEEEecCCCCccccccc
Q psy12552 22 MPGLTPNGRRVIIMRASDLDQVL----SADAATGMKLVLMIGDIRLKEESV-------GVAGDVYVFDAAIATPQNFAAH 90 (250)
Q Consensus 22 l~g~D~~Gr~Vi~~r~~~~d~~~----~~~~~~~~r~~~~~~e~~l~~~~~-------~~~g~v~I~D~~g~s~~N~~~~ 90 (250)
++|+|++||||+++|++++|+ + ..+..+++|++++++|.++.+... ++.|+++|+|++|+++
T Consensus 88 ~~g~Dk~GrpV~~~~~g~~d~-~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl------ 160 (403)
T 1olm_A 88 MCGYDLDGCPVWYDIIGPLDA-KGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGL------ 160 (403)
T ss_dssp EEEECTTSCEEEEEECTTCCH-HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCG------
T ss_pred eeccCCCcCEEEEEecCCCCh-HHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCH------
Confidence 468999999999999999998 5 589999999999999998876542 3789999999999999
Q ss_pred cccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEe
Q psy12552 91 IAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVH 170 (250)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~ 170 (250)
+|+.+..++.+|+++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|+
T Consensus 161 --------------------~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~ 220 (403)
T 1olm_A 161 --------------------KHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVL 220 (403)
T ss_dssp --------------------GGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEEC
T ss_pred --------------------HHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEE
Confidence 666666678899999999999999999999999999999999999999999999999999
Q ss_pred CC--hHHHHhhCCCCCCcccCCCCCCCh
Q psy12552 171 AD--MESLYKSIPKDVLPEEYGGYAGDI 196 (250)
Q Consensus 171 ~~--~~~L~~~i~~~~LP~eyGG~~~~~ 196 (250)
++ .++|.++||+++||++|||++++.
T Consensus 221 ~~~~~~~L~~~I~~~~LP~~yGG~~~~~ 248 (403)
T 1olm_A 221 GANWKEVLLKHISPDQVPVEYGGTMTDP 248 (403)
T ss_dssp CTTHHHHHTTTSCGGGSBGGGTSSBCCT
T ss_pred ChhHHHHHHhhcChhhCchhhCCCcCCC
Confidence 75 678999999999999999999753
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.96 E-value=1.1e-29 Score=231.77 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=132.9
Q ss_pred eeeecCCCCCCCCCeEEEEecCCCCcccC----CCHHHHHHHHHHHHHHHHhhc--------CCCcccEEEEEecCCCCc
Q psy12552 17 HNSTPMPGLTPNGRRVIIMRASDLDQVLS----ADAATGMKLVLMIGDIRLKEE--------SVGVAGDVYVFDAAIATP 84 (250)
Q Consensus 17 g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~----~~~~~~~r~~~~~~e~~l~~~--------~~~~~g~v~I~D~~g~s~ 84 (250)
.+...++|+|++||||+++|+|++|+ +. .+..+++|++++.+|.+++.. ...+.++++|+|++|+++
T Consensus 118 ~~~~~~~g~Dk~GRpV~i~r~g~~d~-~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl 196 (320)
T 3q8g_A 118 MYPQYYHHVDKDGRPLYFAELGGINL-KKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISL 196 (320)
T ss_dssp TSCEEEEEECTTCCEEEEEECTTCCH-HHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCH
T ss_pred hCCceecCCCCCcCEEEEEeccccCH-HHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCH
Confidence 34456689999999999999999998 54 488899999999999876421 112577899999999999
Q ss_pred cccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhccccccc
Q psy12552 85 QNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIR 164 (250)
Q Consensus 85 ~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~ 164 (250)
+|+.++ ++.+|+++.++|++||+|++++||||+|++|+.+|+++||||+++|+
T Consensus 197 --------------------------~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~ 249 (320)
T 3q8g_A 197 --------------------------SNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTV 249 (320)
T ss_dssp --------------------------HHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHH
T ss_pred --------------------------HHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHh
Confidence 565554 67899999999999999999999999999999999999999999999
Q ss_pred CcEEEeCC--hHHHHhhCCCCCCcccCCCCCCCh
Q psy12552 165 NRIVVHAD--MESLYKSIPKDVLPEEYGGYAGDI 196 (250)
Q Consensus 165 ~ri~~~~~--~~~L~~~i~~~~LP~eyGG~~~~~ 196 (250)
+||+|+++ .++|.++||+++||++|||+++..
T Consensus 250 ~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~ 283 (320)
T 3q8g_A 250 SKIFILGSSYKKELLKQIPIENLPVKYGGTSVLH 283 (320)
T ss_dssp HTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCCS
T ss_pred hhEEEeCCCcHHHHHhhCChhhCChhhCCCCCCC
Confidence 99999976 689999999999999999999653
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.21 E-value=9.8e-12 Score=109.94 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=108.4
Q ss_pred eeecCCCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCccccccccccccch
Q psy12552 18 NSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIAKFTPT 97 (250)
Q Consensus 18 ~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~~~~~~ 97 (250)
.+++-.|.|++||||+++.++++++ ...+.+.++.+.+..++... ...+.+|+|+.+++..|
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~-~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n----------- 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKT-GQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSN----------- 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCB-TTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGG-----------
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCC-CCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCccc-----------
Confidence 3444458999999999999999988 77887777766666665332 35689999999999854
Q ss_pred hhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHH-HhhcccccccCcEEEeCChHHH
Q psy12552 98 LIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINL-VKPFIKEKIRNRIVVHADMESL 176 (250)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~l-vk~fL~~k~~~ri~~~~~~~~L 176 (250)
+.+.+.++++.+.+-..|...++++||+|+++++...+.. .+++.+.+..+++++.++.++|
T Consensus 73 -----------------~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL 135 (256)
T 3pg7_A 73 -----------------RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKL 135 (256)
T ss_dssp -----------------CCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGG
T ss_pred -----------------CCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHH
Confidence 2456678888888888999999999999999999976665 5667777888999999999999
Q ss_pred HhhCCCCCC
Q psy12552 177 YKSIPKDVL 185 (250)
Q Consensus 177 ~~~i~~~~L 185 (250)
.++|+.++|
T Consensus 136 ~~~i~~~~L 144 (256)
T 3pg7_A 136 AEHIEHEQQ 144 (256)
T ss_dssp GGTSCGGGC
T ss_pred HhhcCHHHc
Confidence 999987766
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.02 E-value=2.1e-10 Score=103.10 Aligned_cols=135 Identities=14% Similarity=0.095 Sum_probs=101.2
Q ss_pred ceeeecCCCCCCCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhcCCCcccEEEEEecCCCCcccccccccccc
Q psy12552 16 VHNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIAKFT 95 (250)
Q Consensus 16 ~g~~~~l~g~D~~Gr~Vi~~r~~~~d~~~~~~~~~~~r~~~~~~e~~l~~~~~~~~g~v~I~D~~g~s~~N~~~~~~~~~ 95 (250)
.+.+++-.|.|++||||+++.+++++. ...+.+.++-+.+..++... ...+.+|+|+++++..|
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~-~~~D~e~Lly~il~tl~~~~------~~~y~lV~D~T~~~~~n--------- 91 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKT-GQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSN--------- 91 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCB-TTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGG---------
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCc-cCCCHHHHHHHHHHHHHHhc------CCCeEEEEEcCCCCccC---------
Confidence 555555568999999999999999988 77887777666666555332 35799999999999855
Q ss_pred chhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH-HHHhhcccccccCcEEEeCChH
Q psy12552 96 PTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTII-NLVKPFIKEKIRNRIVVHADME 174 (250)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~-~lvk~fL~~k~~~ri~~~~~~~ 174 (250)
..+.+.++++..++...|+.+++++|++|++.++...+ ...+++.+.+..+|+.++++..
T Consensus 92 -------------------~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~ 152 (290)
T 3peg_A 92 -------------------RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPG 152 (290)
T ss_dssp -------------------CCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSC
T ss_pred -------------------CChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHH
Confidence 23556788888888899999999999999999998855 4678888889999999988777
Q ss_pred HHHhhCCCCCC
Q psy12552 175 SLYKSIPKDVL 185 (250)
Q Consensus 175 ~L~~~i~~~~L 185 (250)
.|..+++.+++
T Consensus 153 ~L~~~i~~~~~ 163 (290)
T 3peg_A 153 KLAEHIEHEQQ 163 (290)
T ss_dssp C----------
T ss_pred HHHhhCCHHHh
Confidence 79999987753
No 8
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=67.28 E-value=25 Score=26.53 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=27.5
Q ss_pred cccceEEEEeCChHHHHHHHHHhhccccccc
Q psy12552 134 VKLKEIHIINASGIVDTIINLVKPFIKEKIR 164 (250)
Q Consensus 134 ~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~ 164 (250)
..+.++=||-.+.|...+..+.++|++.+++
T Consensus 83 ~~~~RiAvV~d~~W~~~~~~~~~~~~~~evk 113 (126)
T 2q3l_A 83 KEFKRVAIIGQGELQEWATRVANWFTPGEFK 113 (126)
T ss_dssp GGEEEEEEECCSHHHHHHHHHHHHHCSSEEE
T ss_pred hcCCEEEEEcChHHHHHHHHHHhhccCCcee
Confidence 6789999999999999999999999876544
No 9
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=38.39 E-value=1.1e+02 Score=22.06 Aligned_cols=70 Identities=7% Similarity=0.003 Sum_probs=43.5
Q ss_pred EEEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH
Q psy12552 73 DVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTII 152 (250)
Q Consensus 73 ~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~ 152 (250)
-.+|+|+++++. ++-+.+..+....+.+-.-+=.++.++|++.-+.-++
T Consensus 49 ~~vvlDls~v~~-------------------------------iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~~~v~~~l 97 (121)
T 3t6o_A 49 RKVLIDLEGVEF-------------------------------FGSSFIELLVRGWKRIKEDQQGVFALCSVSPYCVEVL 97 (121)
T ss_dssp CEEEEECTTCCE-------------------------------ECHHHHHHHHHHHHHHTTSTTCEEEEESCCHHHHHHH
T ss_pred CeEEEECCCCCE-------------------------------EcHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 469999999998 2334445455544443221446789999998888777
Q ss_pred HHHhhcccccccCcEEEeCChHHHHhh
Q psy12552 153 NLVKPFIKEKIRNRIVVHADMESLYKS 179 (250)
Q Consensus 153 ~lvk~fL~~k~~~ri~~~~~~~~L~~~ 179 (250)
.+.. +.+.+.++++.++..+.
T Consensus 98 ~~~g------l~~~~~i~~~~~~Al~~ 118 (121)
T 3t6o_A 98 QVTH------IDEVWPRYSTKQEALLA 118 (121)
T ss_dssp TTCS------GGGGSCEESSHHHHHHH
T ss_pred HHhC------ccceecccCCHHHHHHH
Confidence 6543 22334567676555443
No 10
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=37.64 E-value=35 Score=27.98 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH-----hhcccccccCcEEEeCChHHHHhhCCC
Q psy12552 120 LIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLV-----KPFIKEKIRNRIVVHADMESLYKSIPK 182 (250)
Q Consensus 120 ~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lv-----k~fL~~k~~~ri~~~~~~~~L~~~i~~ 182 (250)
.+-.++.+.|-... -+.|.++|...+.+-+..++ ..|++++-++.+.+.++.+++.+++.|
T Consensus 124 Elfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee~~~~l~~ 189 (189)
T 3sbx_A 124 ELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSHHHHHHHHCC
T ss_pred HHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHhcC
Confidence 34444555555442 36899999977766666554 358888889999999999999887653
No 11
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=34.19 E-value=41 Score=27.82 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHh-----hcccccccCcEEEeCChHHHHhhCCC
Q psy12552 119 TLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVK-----PFIKEKIRNRIVVHADMESLYKSIPK 182 (250)
Q Consensus 119 ~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk-----~fL~~k~~~ri~~~~~~~~L~~~i~~ 182 (250)
+.+-.++.+.|-... -+.|.++|...+.+-++..++ .|++++-++.+.+.++.+++.+.+.+
T Consensus 132 dEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~~e~~~~l~~ 198 (199)
T 3qua_A 132 EEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESSHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHHHHhc
Confidence 344445555565543 368999998777777777654 46777788889999999999888764
No 12
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=34.03 E-value=1.4e+02 Score=21.82 Aligned_cols=70 Identities=3% Similarity=0.076 Sum_probs=43.1
Q ss_pred EEEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH
Q psy12552 73 DVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTII 152 (250)
Q Consensus 73 ~v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~ 152 (250)
-.+|+|+++++. ++-+.+..+..+.+.+ -.+=.++.++|++.-+.-++
T Consensus 53 ~~vvlDls~V~~-------------------------------iDSsGl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l 100 (125)
T 2ka5_A 53 NKIFLVLSDVES-------------------------------IDSFSLGVIVNILKSI-SSSGGFFALVSPNEKVERVL 100 (125)
T ss_dssp CEEEEECTTCSC-------------------------------CCHHHHHHHHHHHHHH-HHHTCEEEEECCCHHHHHHH
T ss_pred CEEEEECCCCCE-------------------------------EcHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHH
Confidence 358999999988 2333344444333332 22336788999999888887
Q ss_pred HHHhhcccccccCcEEEeCChHHHHhhC
Q psy12552 153 NLVKPFIKEKIRNRIVVHADMESLYKSI 180 (250)
Q Consensus 153 ~lvk~fL~~k~~~ri~~~~~~~~L~~~i 180 (250)
.+.. +.+.+.+..+.++..+.+
T Consensus 101 ~~~g------l~~~~~i~~s~~~Al~~~ 122 (125)
T 2ka5_A 101 SLTN------LDRIVKIYDTISEAMEEV 122 (125)
T ss_dssp HHTT------STTTSEEESSHHHHHTTT
T ss_pred HHcC------CCceEEecCCHHHHHHHh
Confidence 7653 223346777766655544
No 13
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=33.65 E-value=1.1e+02 Score=21.73 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=45.0
Q ss_pred EEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHH
Q psy12552 74 VYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIIN 153 (250)
Q Consensus 74 v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~ 153 (250)
.+|+|+++++. ++.+.+..+..+.+.+- .+=.++.++|++.-+.-++.
T Consensus 44 ~vvlDls~v~~-------------------------------iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~~v~~~l~ 91 (117)
T 4hyl_A 44 KMILDLREVSY-------------------------------MSSAGLRVLLSLYRHTS-NQQGALVLVGVSEEIRDTME 91 (117)
T ss_dssp EEEEEEEEEEE-------------------------------ECHHHHHHHHHHHHHHH-HTTCEEEEECCCHHHHHHHH
T ss_pred eEEEECCCCcE-------------------------------EcHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHH
Confidence 89999999987 23344444444433322 23457899999998888887
Q ss_pred HHhhcccccccCcEEEeCChHHHHhhCC
Q psy12552 154 LVKPFIKEKIRNRIVVHADMESLYKSIP 181 (250)
Q Consensus 154 lvk~fL~~k~~~ri~~~~~~~~L~~~i~ 181 (250)
+.. +.+.+.++++.++..+.+.
T Consensus 92 ~~g------l~~~~~i~~~~~~Al~~~~ 113 (117)
T 4hyl_A 92 ITG------FWNFFTACASMDEALRILG 113 (117)
T ss_dssp HHT------CGGGCEEESCHHHHHHHHC
T ss_pred HhC------ccceeeecCCHHHHHHHhc
Confidence 764 2234567877666655544
No 14
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=29.42 E-value=1.4e+02 Score=20.74 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=42.7
Q ss_pred EEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHH
Q psy12552 74 VYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIIN 153 (250)
Q Consensus 74 v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~ 153 (250)
.+|+|+++++. ++.+.+..+..+.+.+- .+=..+.++|++.-+..++.
T Consensus 45 ~vvlDls~v~~-------------------------------iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~~v~~~l~ 92 (116)
T 1th8_B 45 HIVLNLGQLTF-------------------------------MDSSGLGVILGRYKQIK-NVGGQMVVCAVSPAVKRLFD 92 (116)
T ss_dssp EEEEEEEEEEE-------------------------------ECHHHHHHHHHHHHHHH-HTTCCEEEESCCHHHHHHHH
T ss_pred EEEEECCCCcE-------------------------------EccHHHHHHHHHHHHHH-HhCCeEEEEeCCHHHHHHHH
Confidence 47999998887 23344444444433322 23357889999988888777
Q ss_pred HHhhcccccccCcEEEeCChHHHHhhC
Q psy12552 154 LVKPFIKEKIRNRIVVHADMESLYKSI 180 (250)
Q Consensus 154 lvk~fL~~k~~~ri~~~~~~~~L~~~i 180 (250)
... +.+.+.++++.++..+.+
T Consensus 93 ~~g------l~~~~~i~~~~~~Al~~~ 113 (116)
T 1th8_B 93 MSG------LFKIIRVEADEQFALQAL 113 (116)
T ss_dssp HHT------GGGTSEEESSHHHHHHHT
T ss_pred HhC------CceeEEEeCCHHHHHHhc
Confidence 654 223457777766655544
No 15
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=24.65 E-value=86 Score=26.04 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH-----hhcccccccCcEEEeCChHHHHhhCCC
Q psy12552 120 LIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLV-----KPFIKEKIRNRIVVHADMESLYKSIPK 182 (250)
Q Consensus 120 ~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lv-----k~fL~~k~~~ri~~~~~~~~L~~~i~~ 182 (250)
-+-.++.+.|-.. .-+-|.++|...+.+-++.++ ..|++++-++.+.+.++.+++.+.+-.
T Consensus 125 ElfE~lt~~qlg~--~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~ 190 (215)
T 2a33_A 125 ELLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEE 190 (215)
T ss_dssp HHHHHHHHHHTTS--CCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESSHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC--CCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeCCHHHHHHHHHH
Confidence 3444455555543 347799999876666666654 457888889999999898888877743
No 16
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=20.13 E-value=2.2e+02 Score=19.48 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=31.9
Q ss_pred EEEEecCCCCccccccccccccchhhhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHH
Q psy12552 74 VYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIIN 153 (250)
Q Consensus 74 v~I~D~~g~s~~N~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~ 153 (250)
.+|+|+++++. ++.+.+..+..+.+.+ ..+=..+.++|++.-+..++.
T Consensus 46 ~vvlDls~v~~-------------------------------iDssgl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~ 93 (110)
T 1sbo_A 46 KIVLDLSSVSY-------------------------------MDSAGLGTLVVILKDA-KINGKEFILSSLKESISRILK 93 (110)
T ss_dssp EEEEECTTCCC-------------------------------BCHHHHHHHHHHHHHH-HHTTCEEEEESCCHHHHHHHH
T ss_pred EEEEECCCCcE-------------------------------EccHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHH
Confidence 47999999987 2334444444443332 223357889999988777776
Q ss_pred HH
Q psy12552 154 LV 155 (250)
Q Consensus 154 lv 155 (250)
+.
T Consensus 94 ~~ 95 (110)
T 1sbo_A 94 LT 95 (110)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 17
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=20.02 E-value=2.3e+02 Score=23.68 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=48.0
Q ss_pred hhHHHHhhhhhhhhhcccCHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcccccccCcEEEeCChHHHHh
Q psy12552 99 IKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHADMESLYK 178 (250)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~~~~~~~lvk~fL~~k~~~ri~~~~~~~~L~~ 178 (250)
++.++.++..+|..+..- ++ .+...++++|-..++.-| ||+++.++++.-..+| +.+.+++
T Consensus 100 L~RaL~Fi~~~l~~l~~~-~~---~l~~~~~~AY~~tL~~yH----gwivr~af~~Am~a~P-----------~R~~fl~ 160 (224)
T 2i3f_A 100 LKRAFQFIASFLRRLVVT-DK---SLEQCVTEAYNCTLRPCH----SAVIQKVFWGGVKLAP-----------SRERFYR 160 (224)
T ss_dssp HHHHHHHHHHHHHHHHHC-CS---CHHHHHHHHHHTTTGGGS----CHHHHHHHHHHHTTCC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-Cc---hHHHHHHHHHHHHhhcCC----chHHHHHHHHHHHhCC-----------CHHHHHH
Confidence 456777777777655432 22 567888999999999977 9999999999877665 5677777
Q ss_pred hCC
Q psy12552 179 SIP 181 (250)
Q Consensus 179 ~i~ 181 (250)
.+.
T Consensus 161 ~L~ 163 (224)
T 2i3f_A 161 KLH 163 (224)
T ss_dssp HHC
T ss_pred HHC
Confidence 765
Done!