RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12552
(250 letters)
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 180 bits (459), Expect = 2e-56
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 32/202 (15%)
Query: 20 TPMPGLTPNGRRVIIMRASDLD-QVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFD 78
+ P G +V+I R + D +V +A ++ L+ ++ ++E G +FD
Sbjct: 86 GVLRSRDPTGSKVLIYRIAHWDPKVFTAYDV--FRVSLITSELIVQEVETQRNGIKAIFD 143
Query: 79 AAIATPQNFAAHIAKFTPTLIKKFLICVQNF-AAHIAKFTPTLIKKFLICVQEAYPVKLK 137
++ + +H + TP++ KK + +++P+K++
Sbjct: 144 ---------------------------LEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVR 176
Query: 138 EIHIINASGIVDTIINLVKPFIKEKIRNRIVVH-ADMESLYKSIPKDVLPEEYGGYAGDI 196
IH+IN I + +++KPF+ EKI+ RI +H + + D+LP EYGG +
Sbjct: 177 GIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSM 236
Query: 197 KTINEQWMKKIESYRDWFKEQE 218
+ I ++W I D+
Sbjct: 237 EDICQEWTNFIMKSEDYLSSIS 258
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 157 bits (400), Expect = 4e-47
Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 36/203 (17%)
Query: 20 TPMPGLTPNGRRVIIMRASDLD-QVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFD 78
+ GR V++ + Q ++ D ++ I + L+ E + G + +
Sbjct: 145 GVLSSRDKYGRVVMLFNIENWQSQEITFDEI--LQAYCFILEKLLENEETQINGFCIIEN 202
Query: 79 AAIATPQNFAAHIAKFTPTLIKKFLICVQNF-AAHIAKFTPTLIKKFLICVQEAYPVKLK 137
+ F A + ++K + +Q+++P K
Sbjct: 203 ---------------------------FKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFK 235
Query: 138 EIHIINASGIVDTIINLVKPFIKEKIRNRIVVHA-DMESLYKSIPKDVLPEEYGGYAGDI 196
IH I+ T N+VKPF+K K+ R+ VH D+ Y+ I +++LP ++GG
Sbjct: 236 AIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKY 295
Query: 197 KTINEQWMKKIESYRDWFKEQET 219
+ +++ + + + T
Sbjct: 296 D--GKAVAEQL--FGPQAQAENT 314
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 74.6 bits (183), Expect = 1e-15
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 112 HIAKFTPTLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVH- 170
H+ K +FL +E YP LK + ++ A + NL+KPF+ E R +I+V
Sbjct: 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG 221
Query: 171 -ADMESLYKSIPKDVLPEEYGG 191
E L K I D +P EYGG
Sbjct: 222 ANWKEVLLKHISPDQVPVEYGG 243
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 66.0 bits (161), Expect = 8e-13
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 119 TLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHAD--MESL 176
+ IK Q YP ++ + +II++ T+ +VKPF+ ++I + + L
Sbjct: 204 SYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKEL 263
Query: 177 YKSIPKDVLPEEYGGYAGDIKTINEQWMKKIESYRD 212
K IP + LP +YGG + ++ + I +RD
Sbjct: 264 LKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRD 299
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 64.0 bits (156), Expect = 3e-12
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 119 TLIKKFLICVQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHAD--MESL 176
+ +++ Q YP ++ + +IINA T L KPF+ ++I + + L
Sbjct: 189 SYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKEL 248
Query: 177 YKSIPKDVLPEEYGG 191
K IP + LP ++GG
Sbjct: 249 LKQIPAENLPVKFGG 263
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 55/319 (17%), Positives = 100/319 (31%), Gaps = 108/319 (33%)
Query: 4 FESGG------WWFESKSVHNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLM 57
F GG ++ E + ++ T + +I +++ L K+
Sbjct: 160 F--GGQGNTDDYFEELRDLYQ-TYHVLVGD-----LIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 58 IGDIR--LKEESVGVAGDVYVFDAAIATPQNF---------AAHIAKFTPTLIKKFL--- 103
+I L+ S Y+ I+ P A + FTP ++ +L
Sbjct: 212 GLNILEWLENPSN-TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 104 -ICVQNF--AAHIAK------FTPTLIKK----FLI---CVQEAYPVKLKEIHIINASGI 147
Q A IA+ F ++ K F I C EAYP I+ S
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-YEAYPNTSLPPSILEDS-- 327
Query: 148 VD----------TIINLVKPFIKEKIR--NRIV-----VHADMESLYKSIPKD-VLPEEY 189
++ +I NL + +++ + N + V SL K+ V+
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---SLVNG-AKNLVV---- 379
Query: 190 GGYAGDIKTINEQWMKKIESYRDWFKEQETVKA----DEAKRPG---KPKT--------- 233
G + +N ++K KA D+++ P K K
Sbjct: 380 SGPPQSLYGLN-LTLRK-------------AKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 234 --HDDLFGMEGSFKQLSID 250
H L + + ++ D
Sbjct: 426 PFHSHL--LVPASDLINKD 442
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 43/291 (14%), Positives = 80/291 (27%), Gaps = 99/291 (34%)
Query: 2 VDFESGGWWFESKSVHNSTPMPGLTPNG-----RRVIIMRASDLDQVLSADAATGMKLVL 56
DF S H+S LTP+ + + R DL + T L
Sbjct: 278 TDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPRRL 330
Query: 57 -MIGDIRLKEESVGVAGDVYVFDAAIATPQNFAAHIA--KFTPTLIKKFLICVQNFAAHI 113
+I + +++ +AT N+ H+ K T T+I+ L
Sbjct: 331 SIIAE-SIRDG--------------LATWDNWK-HVNCDKLT-TIIESSL---------- 363
Query: 114 AKFTPTLIKK-FLICV--QEAYPVKLKEIHIINASGIVDTIINLVKPF------------ 158
P +K F + + + +I I ++ +V
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 159 -----------IKEKIRNRIVVHADMESLYKSI----PKDVLPEEYGGYAGDIKTINEQW 203
+K K+ N +H + Y D++P Y +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY----------F 473
Query: 204 -------MKKIESYRDW--FKE--------QETVKADEAKRPGKPKTHDDL 237
+K IE F+ ++ ++ D + L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Score = 35.6 bits (81), Expect = 0.013
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 32/159 (20%)
Query: 113 IAKFTPTLIKKFLIC--VQEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRI--V 168
++ F + F C VQ+ K I + +D II R+
Sbjct: 22 LSVFEDAFVDNF-DCKDVQDM----PKSI-LSKEE--IDHIIMS--KDAVSGTL-RLFWT 70
Query: 169 VHADMESLYKSIPKDVLPEEYGGYAGDIKTINEQ---WMKKIESYRD-WFKEQETVKADE 224
+ + E + + ++VL Y IKT Q + RD + + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 225 AKRPG------------KPKTHDDLFGMEGSFKQ-LSID 250
R +P + + G+ GS K +++D
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Score = 31.0 bits (69), Expect = 0.40
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 158 FIKEKIRNRIVVHADMESLYKSIPKDVLP--EEYGGYAGDIKTINEQWMKKIESY 210
F+++KIR H + L + Y Y D E+ + I +
Sbjct: 502 FLEQKIR-----HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain,
phosphatidylethanolamin binding, lipid binding, lipid
bindi protein; HET: PEV; 2.52A {Homo sapiens}
Length = 290
Score = 28.1 bits (62), Expect = 2.4
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 115 KFTPTLIKKFLICVQEAYPVKLKEIHIINA-SGIVDTIINLVKPFIKEKIRNRIVVHADM 173
+F + K+ + + ++I N S + + + K R+V
Sbjct: 92 RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP 151
Query: 174 ESLYKSIPKDVL 185
L + I +
Sbjct: 152 GKLAEHIEHEQQ 163
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.7
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 14/32 (43%)
Query: 201 EQWMKKIESYRDWFKEQETVK---ADEAKRPG 229
+Q +KK+++ ++K D A P
Sbjct: 19 KQALKKLQA---------SLKLYADDSA--PA 39
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP
synthetase, UTP, glutamine, amidotransferase, ligase,
phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A
3ihl_A*
Length = 294
Score = 26.4 bits (59), Expect = 9.8
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 155 VKPFIKEKIRNRIVVHADMESLYKSIPKDVLPEEYGGYAGDI 196
V P I + I+ ++ A + + V E GG GDI
Sbjct: 135 VVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDI 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,026,340
Number of extensions: 250874
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 18
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)