RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12552
(250 letters)
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 125 bits (315), Expect = 1e-36
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 30/199 (15%)
Query: 20 TPMPGLTPNGRRVIIMRASDLD-QVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFD 78
+ P G +V+I R + D +V +A ++ L+ ++ ++E G +FD
Sbjct: 12 GVLRSRDPTGSKVLIYRIAHWDPKVFTAYDV--FRVSLITSELIVQEVETQRNGIKAIFD 69
Query: 79 AAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICVQEAYPVKLKE 138
+H + TP++ KK + +++P+K++
Sbjct: 70 LEGWQF--------------------------SHAFQITPSVAKKIAAVLTDSFPLKVRG 103
Query: 139 IHIINASGIVDTIINLVKPFIKEKIRNRIVVHADM-ESLYKSIPKDVLPEEYGGYAGDIK 197
IH+IN I + +++KPF+ EKI+ RI +H + + D+LP EYGG ++
Sbjct: 104 IHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSME 163
Query: 198 TINEQWMKKIESYRDWFKE 216
I ++W I D+
Sbjct: 164 DICQEWTNFIMKSEDYLSS 182
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 77.4 bits (190), Expect = 5e-18
Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 20/177 (11%)
Query: 22 MPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAI 81
M G +G V LD +A+ L+ +R E +
Sbjct: 13 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK--MRECE---------LLLQECA 61
Query: 82 ATPQNFAAHIAKFTPTLIKKFLICVQNF-AAHIAKFTPTLIKKFLICVQEAYPVKLKEIH 140
+ T + + H+ K +FL +E YP LK +
Sbjct: 62 HQTTKLGRKVETIT------IIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLF 115
Query: 141 IINASGIVDTIINLVKPFIKEKIRNRIVVH--ADMESLYKSIPKDVLPEEYGGYAGD 195
++ A + NL+KPF+ E R +I+V E L K I D +P EYGG D
Sbjct: 116 VVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTD 172
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 72.1 bits (176), Expect = 5e-16
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 22/174 (12%)
Query: 22 MPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVGVAGDVYVFDAAI 81
+GR V ++ + +++ + V+ +++ +
Sbjct: 15 YHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL---------------VWEYESVV 59
Query: 82 ATPQNFAAHIAKFTPTLIKKFLICV--QNFAAHIAKFTPTLIKKFLICVQEAYPVKLKEI 139
Q ++ L++ + + + A + +++ Q YP ++ +
Sbjct: 60 ---QYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKF 116
Query: 140 HIINASGIVDTIINLVKPFIKEKIRNRIVVHAD--MESLYKSIPKDVLPEEYGG 191
+IINA T L KPF+ ++I + + L K IP + LP ++GG
Sbjct: 117 YIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 170
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 269
Score = 28.2 bits (63), Expect = 0.88
Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 27/137 (19%)
Query: 90 HIAKFTPTLIKKFL------ICVQNFAA----HIAKFTPTLIKKFLICVQEAYPVKLKEI 139
H+ PT ++ I + + A + + FLI + E
Sbjct: 63 HLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKI---------ET 113
Query: 140 HIINASGIVDTIINLVKPFIKEKIRNRIVVHADMESLYKSIPKDVLPEEYGGYAGDIKT- 198
G + + L E ++ ++ D+ + + KD EE IKT
Sbjct: 114 WHKPDLGTQENVHKLEP----EAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSIKTG 169
Query: 199 ---INEQWMKKIESYRD 212
+ W +++ + +D
Sbjct: 170 RGPLGPNWKQELVNQKD 186
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
{Streptoverticillium mobaraense [TaxId: 35621]}
Length = 331
Score = 27.8 bits (61), Expect = 1.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 181 PKDVLPEEYGGYAGDIKTINEQWMKK---IESYRDWFKEQETVKADE 224
P D +P+ Y G +T+ +++K + S+RD K+Q T + E
Sbjct: 12 PLDRMPDPYRPSYGRAETVVNNYIRKWQQVYSHRDGRKQQMTEEQRE 58
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 26.5 bits (57), Expect = 2.8
Identities = 5/47 (10%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 124 FLICVQEAYPVKLKE----IHIINASGIVDTIINLVKPFIKEKIRNR 166
F + +K+ +++AS ++ + ++ ++ I
Sbjct: 153 FQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATA 199
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 26.0 bits (56), Expect = 3.7
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 124 FLICVQEAY---PVKLKEIHIINASG----IVDTIINLVKPFIKE 161
F + Y + K IH I+A+ ++D I V ++KE
Sbjct: 165 FFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 209
>d1j7na1 d.92.1.14 (A:27-263) Anthrax toxin lethal factor, N- and
C-terminal domains {Bacillus anthracis [TaxId: 1392]}
Length = 237
Score = 26.1 bits (57), Expect = 4.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 154 LVKPFIKEKIRNRIVVHAD-MESLYKSIPKDVLPEEYGGYAGDIKTINEQWMKKIE 208
++K +K +++ V + E L + +P DVL E Y G I ++ K I
Sbjct: 13 IMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVL-EMYKAIGGKIYIVDGDITKHIS 67
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 26.0 bits (57), Expect = 4.9
Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 18/177 (10%)
Query: 10 WFESKSVHNSTPMPGLTPNGRRVIIMRASDLDQVLSADAATGMKLVLMIGDIRLKEESVG 69
+F+ + +++ ++ +L + +KLV + +
Sbjct: 115 FFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQ 174
Query: 70 VAGDVYVFDAAIATPQN----------FAAHIAKFTPTLIKKFLICVQN------FAAHI 113
+ I Q H KF PTL K + A +
Sbjct: 175 NIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNS 234
Query: 114 AKFTPTLIKKFLICV-QEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVV 169
L L+ + + + ++ LVK IKEK+ R+ +
Sbjct: 235 NHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVS-RLCI 290
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 26.0 bits (57), Expect = 5.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 157 PFIKEKIRNRIVVHADMESLYKSIPKDVLPEEYGGYAGDIKT 198
P I + I+ ++ A + + V E GG GDI++
Sbjct: 115 PHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIES 156
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 25.8 bits (56), Expect = 5.3
Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 12/148 (8%)
Query: 69 GVAGDVYVFDAAIATPQNFAAHIAKFTPTLIKKFLICVQNFAAHIAKFTPTLIKKFLICV 128
G ++V D N F P I + + A + P C
Sbjct: 60 GF-RQIHVIDMDTIDVSNLNRQFL-FRPKDIGRP--KAEVAAEFLNDRVPN-------CN 108
Query: 129 QEAYPVKLKEIHIINASGIVDTIINLVKPFIKEKIRNRIVVHADMESLYKSIPKDVLPEE 188
+ K+++ + I+ + I + N +++ P ++P
Sbjct: 109 VVPHFNKIQDFNDTFYR-QFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLI 167
Query: 189 YGGYAGDIKTINEQWMKKIESYRDWFKE 216
GG G +
Sbjct: 168 DGGTEGFKGNARVILPGMTACIECTLEL 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 996,958
Number of extensions: 47630
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 15
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)