BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12553
(401 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis]
gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis]
Length = 342
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 173/293 (59%), Positives = 212/293 (72%), Gaps = 22/293 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I + +NS+N + S +P CK QPC+LG+DEAGRGPVLGPMVYG +YCP N++E L L
Sbjct: 42 IAARENSKNTVYLSDVPAICKDQPCMLGVDEAGRGPVLGPMVYGISYCPL-NSKEALVEL 100
Query: 77 GCADSKALTEKKRDDI---LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I ++++ N+ +GW VEIISPNVI NSM RR K SLNEVS D
Sbjct: 101 GCADSKQLTEEKRDIIFNDMNTLEYANSCIGWAVEIISPNVISNSMYRRSKCSLNEVSMD 160
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 161 SAMGLIQRAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTY------- 213
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVTK+FL+ENI
Sbjct: 214 --------PIVSAASICAKVTRDHALKVWQFPEGLVIKDNAFGSGYPGDPVTKRFLTENI 265
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFK 306
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 266 DLVFGFPRLVRFSWSTAENALADKAYEMEFDEPDTEKPKYAGTK---LTKFFK 315
>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba]
gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba]
Length = 347
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 175/318 (55%), Positives = 220/318 (69%), Gaps = 25/318 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NSRN + S +PE CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++ ++ L++L
Sbjct: 47 IASKENSRNTVYVSDVPEICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLES-KKALEDL 105
Query: 77 GCADSKALTEKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I + I ++ + +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEEKRDIIFNDINTKDYATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVT++FL+E+I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWKFPEGLVIKDNAFGSGYPGDPVTRRFLTEHI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKFAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKESPYG 331
V+ E FFK+ G
Sbjct: 327 --EVIREECRFFKQRHLG 342
>gi|427795471|gb|JAA63187.1| Putative ribonuclease hi, partial [Rhipicephalus pulchellus]
Length = 325
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/303 (54%), Positives = 216/303 (71%), Gaps = 21/303 (6%)
Query: 4 IHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAY 63
H SN+ + + + +NSRN II S +P+ KS+PC+LG+DEAGRGPVLGPMVYG AY
Sbjct: 16 FHRQSNIVSMNLDMFNKNNSRNAIIKSVVPDVAKSEPCILGVDEAGRGPVLGPMVYGIAY 75
Query: 64 CPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQ 123
CP + E LK LG ADSK LTE+KR+++L ++ K +++LG+MVE+I P+VI ML
Sbjct: 76 CPL-SAESQLKELGFADSKTLTEEKREELLKAVEK-SSFLGFMVEVIPPSVISGHMLDVT 133
Query: 124 KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKAD 183
KYSLN +SHD+AIGLIR+ + GV V +VYVDTVGPPE Y++KL +FP++ +TVA KAD
Sbjct: 134 KYSLNAISHDSAIGLIRQALDDGVQVTQVYVDTVGPPEKYQEKLQALFPDIKVTVAKKAD 193
Query: 184 STYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDP 243
+TY P+V AASICAKV+RD A++SW F EGI ++ +GSGYP DP
Sbjct: 194 ATY---------------PIVSAASICAKVARDHAIQSWEFPEGINVKAEEYGSGYPNDP 238
Query: 244 VTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
VTKKFL EN+D VFGFP LVRFSWSTA K+L++ A V DE D+ E+ G SI++
Sbjct: 239 VTKKFLLENMDTVFGFPSLVRFSWSTAEKLLEDNAAAVMWDEEDNAEQSG----MASIQS 294
Query: 304 FFK 306
FF+
Sbjct: 295 FFQ 297
>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae]
gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae]
Length = 347
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 218/314 (69%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NS+N + S +P CK +PC+LG+DEAGRGPVLGPMVYG AYCP ++ ++ L++L
Sbjct: 47 IASKENSKNTVYLSDVPAVCKDKPCMLGVDEAGRGPVLGPMVYGIAYCPLES-KKALEDL 105
Query: 77 GCADSKALTEKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I + I ++ + +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEEKRDIIFNDINTKDYATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNISEVYVDTVGPPEKYQEKLLKRFPTFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVTK+FL+E+I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWNFPEGLVIKDNAFGSGYPGDPVTKRFLAEHI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DVVFGFPRLVRFSWSTAENALADKAFDMEFDEPDTEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
V+ E FFK+
Sbjct: 327 --EVIREECRFFKQ 338
>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta]
gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta]
Length = 347
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/318 (55%), Positives = 219/318 (68%), Gaps = 25/318 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NSRN I S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++ + L ++L
Sbjct: 47 IASKENSRNTIYLSDVPDVCKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESKKPL-EDL 105
Query: 77 GCADSKALTEKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I + I ++ + +GW VEIISP+ I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEEKRDIIFNDINTKDYATSCIGWAVEIISPSTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVTK+FL+E+I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWKFPEGLVIKDNAFGSGYPGDPVTKRFLAEHI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKAKFAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKESPYG 331
V+ E FFK+ G
Sbjct: 327 --EVIREECRFFKQRHLG 342
>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis]
gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis]
Length = 339
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 218/307 (71%), Gaps = 22/307 (7%)
Query: 3 EIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTA 62
+I+ S++ + I + +NS+N I S +P CK QPC+LG+DEAGRGPVLGPMVYG +
Sbjct: 25 DINRISSLKSLGPFIAARENSKNTIYLSDVPAICKEQPCMLGVDEAGRGPVLGPMVYGIS 84
Query: 63 YCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSICKENAWLGWMVEIISPNVICNSM 119
YCP + L++ LGCADSK LTE+KR+ I L+++ N+ +GW VEIISPNVI +SM
Sbjct: 85 YCPLERKSALVE-LGCADSKQLTEEKREIIFNDLNTLEYANSCIGWAVEIISPNVISSSM 143
Query: 120 LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVA 179
RR K SLNEVS D+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA
Sbjct: 144 YRRTKCSLNEVSMDSAMGLIQEAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPNFKITVA 203
Query: 180 SKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGY 239
KADSTY P+V AASICAKV+RD ALK W F EG+ I++NA+GSGY
Sbjct: 204 KKADSTY---------------PIVSAASICAKVTRDHALKVWQFPEGLIIKDNAFGSGY 248
Query: 240 PGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR 299
PGDPVTK+FL+ENID VFGFP+LVRFSWSTA L +KA +E DE D E+ + K
Sbjct: 249 PGDPVTKRFLTENIDLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK-- 306
Query: 300 SIRNFFK 306
+ FFK
Sbjct: 307 -LTKFFK 312
>gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 222/324 (68%), Gaps = 27/324 (8%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NS+N + S +P CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++ + L+ +L
Sbjct: 40 IASRENSQNTVYLSDVPAVCKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESKQALI-DL 98
Query: 77 GCADSKALTEKKRDDI---LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I ++++ N+ +GW VEIISPNVI SM RR K SLNEVS +
Sbjct: 99 GCADSKQLTEEKRDVIFNEMNTLEYANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSME 158
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL FP ITVA KADSTY
Sbjct: 159 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLRRFPNFKITVAKKADSTY------- 211
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVTK+FL+E+I
Sbjct: 212 --------PIVSAASICAKVTRDHALKVWRFPEGLVIKDNAFGSGYPGDPVTKRFLTEHI 263
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L KA +E DE D E+ + K + FFK
Sbjct: 264 DLVFGFPRLVRFSWSTAENALANKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTK--- 317
Query: 314 ESPVVEERHAFFKESPYGGSKVFE 337
+ V+ E FFK+ S VFE
Sbjct: 318 DGEVIREECRFFKQRHL--SNVFE 339
>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni]
gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni]
Length = 336
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 173/299 (57%), Positives = 212/299 (70%), Gaps = 26/299 (8%)
Query: 2 EEIH-TASNVTEVESC------IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVL 54
EE H T NV ++ S I + +NS+N I S +P+ CK QPC+LG+DEAGRGPVL
Sbjct: 14 EEKHQTEENVNKITSLKSLGPFISARENSKNTIYVSDVPDICKEQPCMLGVDEAGRGPVL 73
Query: 55 GPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSICKENAWLGWMVEIIS 111
GPMVYG +YCP ++ + L+ +LGCADSK LTE+KRD I L+++ +GW VEIIS
Sbjct: 74 GPMVYGISYCPLESKQALI-DLGCADSKQLTEEKRDIIFNELNTLDYATECIGWAVEIIS 132
Query: 112 PNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIF 171
PNVI +SM RR K SLNEVS D+A+GLI++ I AGV + EVYVDTVGPPE Y++KL F
Sbjct: 133 PNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVQIAEVYVDTVGPPEKYQEKLLRRF 192
Query: 172 PELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIE 231
P ITVA KADSTY P+V AASICAKV+RD ALK W F EG+ I+
Sbjct: 193 PNFKITVAKKADSTY---------------PIVSAASICAKVTRDHALKVWKFPEGLVIK 237
Query: 232 NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEE 290
+NA+GSGYPGDPVTK+FL ENID VFGFP+LVRFSWSTA L +KA +E DE D E+
Sbjct: 238 DNAFGSGYPGDPVTKRFLVENIDLVFGFPRLVRFSWSTAENALVDKAYEMEFDEPDSEK 296
>gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis]
gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis]
Length = 340
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 178/324 (54%), Positives = 221/324 (68%), Gaps = 27/324 (8%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NS+N + S +P CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++ + L+ +L
Sbjct: 40 IASRENSQNTVYLSDVPAVCKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESKQALI-DL 98
Query: 77 GCADSKALTEKKRDDI---LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I L+++ N+ +GW VEIISPNVI SM RR K SLNEVS +
Sbjct: 99 GCADSKQLTEEKRDVIFNELNTLEYANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSME 158
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL FP ITVA KADSTY
Sbjct: 159 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLRRFPNFKITVAKKADSTY------- 211
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVTK+FL+E+I
Sbjct: 212 --------PIVSAASICAKVTRDHALKVWRFPEGLVIKDNAFGSGYPGDPVTKRFLTEHI 263
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L KA +E DE D E + K + FFK +
Sbjct: 264 DLVFGFPRLVRFSWSTAENALANKAYDMEFDEPDSEMPKYAGTK---LTKFFKGTTKDG- 319
Query: 314 ESPVVEERHAFFKESPYGGSKVFE 337
V+ E FFK+ S VFE
Sbjct: 320 --EVIREECRFFKQRHL--SSVFE 339
>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi]
gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi]
Length = 334
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 169/293 (57%), Positives = 212/293 (72%), Gaps = 22/293 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +++NS+N + S +P CK QPC+LG+DEAGRGPVLGPMVYG +YCP ++ + +L L
Sbjct: 34 IAAHENSQNTVYLSDVPAICKEQPCMLGVDEAGRGPVLGPMVYGISYCPLES-KSVLVEL 92
Query: 77 GCADSKALTEKKRDDI---LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I L+++ N+ +GW VEIISPNVI +SM RR K SLNE+S D
Sbjct: 93 GCADSKQLTEEKRDIIFNDLNTLEYANSCIGWAVEIISPNVISSSMYRRTKCSLNEISMD 152
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI+ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 153 SAMGLIQHAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTY------- 205
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVTK+FL+E+I
Sbjct: 206 --------PIVSAASICAKVTRDHALKVWQFPEGLLIKDNAFGSGYPGDPVTKRFLTEHI 257
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFK 306
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 258 DLVFGFPRLVRFSWSTAENALADKAFEMEFDEPDSEKPKYAGTK---LTKFFK 307
>gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia]
gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia]
Length = 347
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 176/314 (56%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP + N+ L++L
Sbjct: 47 IASKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLERNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
V+ E FFK+
Sbjct: 327 --EVIREECRFFKQ 338
>gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex]
Length = 307
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 210/313 (67%), Gaps = 32/313 (10%)
Query: 19 SNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGC 78
S +N RN+ I S +P+ C+ QPC LGIDEAGRGPVLGPMVYG YCP+ EEL K +GC
Sbjct: 9 SENNHRNITIVSKVPDVCRKQPCALGIDEAGRGPVLGPMVYGITYCPESRAEEL-KAIGC 67
Query: 79 ADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL 138
ADSK LTE++R+ + + ++GW VE+ISPN ICN+M +R K+SLNEVSHD+AIGL
Sbjct: 68 ADSKTLTEEQREKLFGKLDSLQDFVGWAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGL 127
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
IRK ++ N+ V+VDTVGPPE Y+ KLS +FP + ITV+ KA D
Sbjct: 128 IRKALSLEANITSVFVDTVGPPEKYQAKLSALFPGIKITVSKKA---------------D 172
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNA------WGSGYPGDPVTKKFLSEN 252
S +PVV AASICAKV+RD AL +W F+E I A WGSGYPGDP TKKFL++N
Sbjct: 173 SLFPVVSAASICAKVARDKALSTWKFKESPFISLKAESQELKWGSGYPGDPTTKKFLAQN 232
Query: 253 IDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADEN 312
ID VFGFPQLVRFSWST+ +ILK K V VE ++ +++E + S++ FF N
Sbjct: 233 IDGVFGFPQLVRFSWSTSEQILKTKGVTVEWEDTEEQENQA-----VSVKKFFSNSGKYN 287
Query: 313 VESPVVEERHAFF 325
SP RH +F
Sbjct: 288 --SP---RRHPYF 295
>gi|380020624|ref|XP_003694182.1| PREDICTED: ribonuclease H2 subunit A-like [Apis florea]
Length = 350
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/308 (55%), Positives = 216/308 (70%), Gaps = 26/308 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
D+S N + S +P+ CK +PC LGIDEAGRGPVLGPMVYG +Y P + ++LL +LGCAD
Sbjct: 59 DHSNNKVHLSKVPQICKDEPCQLGIDEAGRGPVLGPMVYGISYAPL-SEKQLLVDLGCAD 117
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK+LTE+KRD I D IC++ +GW V++ISPNVI NSM RR K SLNEVS ++AI L +
Sbjct: 118 SKSLTEEKRDTIFDKICEQYKTIGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAK 177
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
VI AG + E+YVDTVG PE Y+ KL +IFP++ ITVA KAD ST
Sbjct: 178 LVIEAGARITEIYVDTVGKPEKYQAKLEQIFPDIKITVAKKAD---------------ST 222
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEG-IQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YP+V AASICAKVSRD A+++W F EG I E +GSGYP DP TKK+LSEN+DPVFGF
Sbjct: 223 YPIVSAASICAKVSRDHAIRAWQFLEGSITTE---YGSGYPNDPETKKWLSENVDPVFGF 279
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
P +VRFSWSTA KIL+ A+ VE +E++D GE K I +FF D++ +S +
Sbjct: 280 PHIVRFSWSTAEKILESDALSVEWEEMEDARIPGEQK----ISSFFARSPDKSFKSQ--K 333
Query: 320 ERHAFFKE 327
+RH FF E
Sbjct: 334 KRHQFFTE 341
>gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 217/314 (69%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE+KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEEKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis
mellifera]
Length = 350
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 170/308 (55%), Positives = 216/308 (70%), Gaps = 26/308 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
D+S N + S +P+ CK +PC LGIDEAGRGPVLGPMVYG +Y P + ++LL +LGCAD
Sbjct: 59 DHSNNKVHLSKVPQICKDEPCQLGIDEAGRGPVLGPMVYGISYAPL-SEKQLLVDLGCAD 117
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK+LTE+KRD I D IC++ +GW V++ISPNVI NSM RR K SLNEVS ++AI L +
Sbjct: 118 SKSLTEEKRDTIFDKICEQYKTIGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAK 177
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
VI AG + E+YVDT+G PE Y+ KL +IFP++ ITVA KADS T
Sbjct: 178 LVIEAGARITEIYVDTIGKPEKYQAKLEQIFPDIKITVAKKADS---------------T 222
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEG-IQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YP+V AASICAKVSRD A+++W F EG I E +GSGYP DP TKK+LSEN+DPVFGF
Sbjct: 223 YPIVSAASICAKVSRDHAIRAWQFLEGSITTE---YGSGYPNDPETKKWLSENVDPVFGF 279
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
P +VRFSWSTA KIL+ A+ VE +E++D GE K I +FF D++ +S +
Sbjct: 280 PHIVRFSWSTAEKILESDALSVEWEEMEDVRNPGEQK----ISSFFAKSPDKSFKSQ--K 333
Query: 320 ERHAFFKE 327
+RH FF E
Sbjct: 334 KRHQFFTE 341
>gi|346466461|gb|AEO33075.1| hypothetical protein [Amblyomma maculatum]
Length = 339
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 216/307 (70%), Gaps = 19/307 (6%)
Query: 19 SNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGC 78
+ +N RN +I ST+P+ K++PC+LG+DEAGRGPVLGPMVYG YCP + ++L K LG
Sbjct: 41 NTNNKRNAVIKSTVPDVTKTEPCILGVDEAGRGPVLGPMVYGIVYCPISSKDQL-KELGF 99
Query: 79 ADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL 138
ADSK LTE+KR+++L I + +++LG+MVE+ISP VI ML KY+LN +SHD+AIGL
Sbjct: 100 ADSKTLTEEKREELLSVIERNSSFLGFMVELISPVVISERMLHVSKYNLNSISHDSAIGL 159
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
IR+ GVNV EVYVDTVGPPE Y+KKL + FP + +TVA KAD
Sbjct: 160 IRRAQEEGVNVAEVYVDTVGPPEKYQKKLEDCFPGIKVTVAKKAD--------------- 204
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
+TYP+V AASICAKV+RD A++SW F EGI ++ +GSGYP DPVTKKFL+EN D VFG
Sbjct: 205 ATYPIVSAASICAKVARDRAIRSWQFPEGIDVKPEDYGSGYPNDPVTKKFLAENTDLVFG 264
Query: 259 FPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVV 318
FP +VRFSWSTA K+L++ A + DE +DEE G+ SI++FF + D +
Sbjct: 265 FPGIVRFSWSTAEKLLEDHAAPIVWDE-EDEEGAGKQNGMASIQSFF--QHDPKRGKKLT 321
Query: 319 EERHAFF 325
E+ +FF
Sbjct: 322 EKESSFF 328
>gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINAKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster]
gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster]
gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans]
gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 217/314 (69%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++ ++ L++L
Sbjct: 47 IASKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLES-KKALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
V+ E FFK+
Sbjct: 327 --EVIREECRFFKQ 338
>gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster]
gi|11387117|sp|Q9VPP5.1|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster]
gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster]
gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct]
gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster]
gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster]
gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster]
gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster]
gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster]
gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGRENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster]
gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster]
gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster]
gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster]
gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster]
gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|443699951|gb|ELT99170.1| hypothetical protein CAPTEDRAFT_183401 [Capitella teleta]
Length = 317
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 169/308 (54%), Positives = 211/308 (68%), Gaps = 22/308 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN ++I+S I + K++PC LGIDEAGRGPVLGPMVYGT +CP ++E LK +G AD
Sbjct: 22 DNRSGVVIASAICDRLKTEPCCLGIDEAGRGPVLGPMVYGTCFCPI-ADKERLKEMGFAD 80
Query: 81 SKALTEKKRDDILDSI-CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
SK LTE+KR+++ I E +GW V I+SPN I NSMLRR KY+LNE+SHD AIGLI
Sbjct: 81 SKTLTEEKRENLFQKIQAAEADLIGWAVHILSPNQISNSMLRRSKYNLNELSHDTAIGLI 140
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+K + +GVNV EV+VDTVG PE Y+ KL IFPEL ITVA KAD+TY
Sbjct: 141 QKALDSGVNVDEVFVDTVGMPEKYQAKLERIFPELKITVAKKADATY------------- 187
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
P+V AASICAKVSRD A+KSW F EG ++GSGYPGD TK FLSE++DPVFGF
Sbjct: 188 --PIVSAASICAKVSRDHAVKSWNFIEGRDYAGKSYGSGYPGDSETKNFLSESMDPVFGF 245
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSWSTAS IL KAV VE + DD+E + K T +I ++F + + +
Sbjct: 246 PQFVRFSWSTASNILDAKAVTVEWE--DDDEMPDDVKSTPAISSYF---SGNKTNAANAQ 300
Query: 320 ERHAFFKE 327
++H FF +
Sbjct: 301 KKHQFFTD 308
>gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 215/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L+ L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEVL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans]
Length = 347
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++ ++ L++L
Sbjct: 47 IASMENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLES-KKALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D ++ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSQKPKYAGTK---LTKFFKGTTK--- 324
Query: 314 ESPVVEERHAFFKE 327
V E FFK+
Sbjct: 325 SGEVTREECRFFKQ 338
>gi|350411556|ref|XP_003489389.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus impatiens]
Length = 334
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 216/312 (69%), Gaps = 34/312 (10%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
D+S N + S +P+ C+ +PC LGIDEAGRGPVLGPMVYG AY P + ++LL +LGCAD
Sbjct: 43 DHSVNRVHLSDVPQMCRDEPCQLGIDEAGRGPVLGPMVYGIAYAPL-SEKQLLVDLGCAD 101
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK+LTE++RD I D+ICK++ +GW V++ISPN+I N+M RR K SLNEVS ++AI L +
Sbjct: 102 SKSLTEEQRDAIFDNICKQHKTIGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAK 161
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
VI AG N+ E+YVDTVG P+ Y+ +L +IFP++ ITVA KAD ST
Sbjct: 162 LVIEAGANITEIYVDTVGVPQKYQARLEQIFPDIKITVAKKAD---------------ST 206
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
YP+V AASICAKV RD ALK+W F+E ++ +GSGYP DP TKK+LSEN+DPVFGFP
Sbjct: 207 YPIVSAASICAKVLRDHALKAWQFRE--ELITTEYGSGYPNDPDTKKWLSENVDPVFGFP 264
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPV--- 317
+VRFSWSTA KIL+ KA+ VE +E++D GE K I FF +SPV
Sbjct: 265 HIVRFSWSTAEKILESKALPVEWEEVEDTGNPGEQK----ISKFF-------AKSPVKSC 313
Query: 318 --VEERHAFFKE 327
+RH FF E
Sbjct: 314 KPQSKRHQFFTE 325
>gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum]
Length = 312
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 173/320 (54%), Positives = 224/320 (70%), Gaps = 29/320 (9%)
Query: 10 VTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNN 69
+ +V+S I S +NS ++ I S +PES ++ C+LGIDEAGRGPVLGPMVYGT+YC DN
Sbjct: 11 IADVKSVISSENNSFDVRIESDLPESTTTEKCILGIDEAGRGPVLGPMVYGTSYCSVDN- 69
Query: 70 EELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNE 129
+ +LK LGCADSK L+E+ RDDI D I K++ LGW V IISP I N RRQK SLNE
Sbjct: 70 QAILKTLGCADSKVLSEQARDDIFDGITKQSEILGWAVHIISPTTISNCSFRRQKCSLNE 129
Query: 130 VSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV 189
+SH+AAIGLI++V+ GVN+ EV+VDTVGPPE Y++KL IFP+L ITV+ K
Sbjct: 130 ISHNAAIGLIQRVLDRGVNICEVFVDTVGPPEKYQEKLLSIFPQLKITVSKK-------- 181
Query: 190 GAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQE--GIQIENNAWGSGYPGDPVTKK 247
ADS +P+V AASICAKV+RD+ALK+W F E G I++N WGSGYP DPVTK+
Sbjct: 182 -------ADSLFPIVSAASICAKVTRDAALKNWKFIERPGEDIDSN-WGSGYPNDPVTKE 233
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
+L +NIDPVFGFP +VRFSWSTA +LK A V+ +EEE E+KK+ I +FF
Sbjct: 234 YLKKNIDPVFGFPSIVRFSWSTAELVLKNNAAQVDW----SDEEEDEDKKSVPITSFFGQ 289
Query: 308 KADENVESPVVEERHAFFKE 327
+ + V+++ FF +
Sbjct: 290 NSKQ------VQQKTPFFDD 303
>gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior]
Length = 332
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 173/319 (54%), Positives = 211/319 (66%), Gaps = 29/319 (9%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
ND+S N I S + + CK +PC LG+DEAGRGPVLGPMVYG +Y P N+ LL +LGCA
Sbjct: 41 NDHSINRIHFSEVSQICKDKPCQLGVDEAGRGPVLGPMVYGISYAPLSQNQ-LLVDLGCA 99
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK+LTEKKRD+I D ICK +GW +E+ISPNVI N+M RR K SLNE+S +A LI
Sbjct: 100 DSKSLTEKKRDEIFDDICKHKDSIGWAIEVISPNVIANNMYRRTKISLNEISMISATNLI 159
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
R+ I AGVNV E+YVDTVG PESY+ +L IFP + I VA KAD +
Sbjct: 160 REAIEAGVNVAEIYVDTVGKPESYQTRLKSIFPSIKIIVAKKAD---------------A 204
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
TYP+V AASICAKVSRD A+++W F+E IE +GSGYP DPVTK +LS N+D VFGF
Sbjct: 205 TYPIVSAASICAKVSRDHAIRAWRFREDDCIETE-YGSGYPNDPVTKNWLSMNVDQVFGF 263
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF--KPKADENVESPV 317
PQLVRFSWSTA +IL+ KA+ VE +E EE E K I FF P NV +
Sbjct: 264 PQLVRFSWSTAEQILESKALTVEWEET--EEISNEQK----ILKFFAKSPTKSSNVHT-- 315
Query: 318 VEERHAFFKESPYGGSKVF 336
++H FF E + V
Sbjct: 316 --KKHPFFTERCLSNTTVL 332
>gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST]
gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST]
Length = 342
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/323 (52%), Positives = 215/323 (66%), Gaps = 27/323 (8%)
Query: 9 NVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDN 68
N+ + I DN++N + S IP+ CK +PC+LG+DEAGRGPVLGPMVYG A+CP +
Sbjct: 34 NLETLGPYILEQDNAKNFVYVSDIPQLCKDEPCMLGVDEAGRGPVLGPMVYGIAFCPL-S 92
Query: 69 NEELLKNLGCADSKALTEKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLRRQKY 125
+++LK LG ADSK LTE+KRD I D + +++ LGW VE ISPNVI MLRR K+
Sbjct: 93 KKDILKQLGFADSKQLTEEKRDQIFDEMNRKDFAKTALGWAVEAISPNVISMCMLRRTKH 152
Query: 126 SLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADST 185
SLNEVS D+AIGLI I AGVN+ EVYVDTVGPPE Y+ KL IFP+ ITVA KADS
Sbjct: 153 SLNEVSMDSAIGLINSAIDAGVNIAEVYVDTVGPPEKYQAKLKAIFPKFKITVAKKADS- 211
Query: 186 YPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVT 245
TYP+V AASI AKV+RD ALK W F+E E ++GSGYPGDP T
Sbjct: 212 --------------TYPIVSAASIAAKVTRDHALKVWKFRERPNEEVTSFGSGYPGDPTT 257
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE-GDEIDDEEEEGENKKTRSIRNF 304
KKFL E ID VFGFP+LVRFSWSTA L++KA +E DE D ++ E + ++ + +
Sbjct: 258 KKFLGE-IDLVFGFPRLVRFSWSTAGNALEKKAYDMEFEDETDAKDAEKASYGSKKLSKY 316
Query: 305 FKPKADENVESPVVEERHAFFKE 327
F +EN +RH +F+E
Sbjct: 317 FATSKNEN------RKRHEYFRE 333
>gi|340729627|ref|XP_003403099.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus terrestris]
Length = 334
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 215/312 (68%), Gaps = 34/312 (10%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
D+S N + S +P+ C+ +PC LGIDEAGRGPVLGPMVYG AY P + ++LL +LGCAD
Sbjct: 43 DHSINRVHLSDVPQICRDEPCQLGIDEAGRGPVLGPMVYGIAYAPL-SEKQLLVDLGCAD 101
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK+LTE++RD I + ICK++ +GW V++ISPN+I N+M RR K SLNEVS ++AI L +
Sbjct: 102 SKSLTEEQRDAIFNKICKQHKTIGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAK 161
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
VI AG N+ E+YVDTVG P+ Y+ +L +IFP++ ITVA KADS T
Sbjct: 162 LVIEAGANITEIYVDTVGVPQKYQARLEQIFPDIKITVAKKADS---------------T 206
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
YP+V AASICAKV RD ALK+W F+E ++ +GSGYP DP TKK+LSEN+DPVFGFP
Sbjct: 207 YPIVSAASICAKVLRDHALKAWQFRE--ELITTEYGSGYPNDPDTKKWLSENVDPVFGFP 264
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPV--- 317
+VRFSWSTA KIL+ KA+ VE ++++D GE K I FF +SPV
Sbjct: 265 HIVRFSWSTAEKILESKALSVEWEKVEDTGNPGEQK----ISKFF-------AKSPVKSC 313
Query: 318 --VEERHAFFKE 327
+RH FF E
Sbjct: 314 KPQSKRHQFFTE 325
>gi|383859304|ref|XP_003705135.1| PREDICTED: ribonuclease H2 subunit A-like [Megachile rotundata]
Length = 334
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 165/285 (57%), Positives = 201/285 (70%), Gaps = 22/285 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
D+S N + +S +P CK +PC LGIDEAGRGPVLGPMVYG +Y P +++ELL LGCAD
Sbjct: 43 DHSVNKVYASKVPRICKDEPCQLGIDEAGRGPVLGPMVYGISYAPL-SSKELLVELGCAD 101
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK+LTE+KRD I D ICKE +GW ++ ISPN+I NSM RR K SLNEVS +AI L +
Sbjct: 102 SKSLTEEKRDTIFDKICKEQDKMGWCIDAISPNIISNSMYRRSKTSLNEVSMLSAIELTK 161
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
I AGV V E+YVDTVG PE Y+ +L EIFP + ITVA KAD ST
Sbjct: 162 MAIEAGVWVSEIYVDTVGKPEKYQARLEEIFPGIKITVAKKAD---------------ST 206
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
YP+V AASICAKVSRD A+++W F+EG A+GSGYP DP TK +L EN+DPVFGFP
Sbjct: 207 YPIVSAASICAKVSRDHAIRAWQFREGSV--GKAYGSGYPNDPETKNWLIENVDPVFGFP 264
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
++VRFSWSTA KIL+EKA+ VE ++ +D GE K I NFF
Sbjct: 265 RIVRFSWSTAEKILEEKALSVEWEDTEDAANPGEQK----ISNFF 305
>gi|442754225|gb|JAA69272.1| Putative ribonuclease hi [Ixodes ricinus]
Length = 357
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 209/308 (67%), Gaps = 21/308 (6%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
+N + +I S +P+ KS PC+LG+DEAGRGPVLGPMVYG AYCP + EE LK LG AD
Sbjct: 9 NNKNSTVIKSAVPDVAKSNPCMLGVDEAGRGPVLGPMVYGIAYCPVEF-EEDLKRLGFAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE+KR++++ + + + LGWMVE+ISP VICN ML KYSLN +SHD+AI LI+
Sbjct: 68 SKTLTEEKREELVGVMEQHSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAISLIK 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ + GV V EVYVDTVGPPE Y+ KL + FP++ ITVA KA D T
Sbjct: 128 QALNDGVCVTEVYVDTVGPPEKYQAKLQDTFPDIKITVAKKA---------------DPT 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+P+V AASICAKV+RD A+++W F EG+ +GSGYP DP TKKFL+ ++D VFGFP
Sbjct: 173 FPIVSAASICAKVARDRAIQTWRFPEGLNFNPEEYGSGYPNDPATKKFLAAHVDNVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
LVRFSWSTA K+L++ A V DE D E+ +N SI++FF K D N + V +
Sbjct: 233 SLVRFSWSTAEKLLEDNAATVSWDE--DAEKATQNNMA-SIQSFF--KRDPNHTAKVAPK 287
Query: 321 RHAFFKES 328
AF ES
Sbjct: 288 ESAFLLES 295
>gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium
castaneum]
gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum]
Length = 306
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/310 (52%), Positives = 202/310 (65%), Gaps = 27/310 (8%)
Query: 9 NVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDN 68
++ + S + S DN+ N + S +P+ CK PC+LGIDEAGRGPVLGPMVYGTA+CP N
Sbjct: 6 DLETLRSFLASKDNTVNNVYFSDVPQVCKDFPCILGIDEAGRGPVLGPMVYGTAFCPL-N 64
Query: 69 NEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLN 128
L +LGCADSKAL E+ RD I IC N +GW VE+I+PN ICNSML RQKYSLN
Sbjct: 65 EATLPDSLGCADSKALNEESRDVIFSKICA-NRKMGWGVEVIAPNSICNSMLSRQKYSLN 123
Query: 129 EVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPV 188
+VS DAAI LI+ + GVN+ VYVDTVGPPE Y+ L +FP
Sbjct: 124 QVSMDAAINLIKMALKGGVNLSHVYVDTVGPPEKYQAYLKSLFPN--------------- 168
Query: 189 VGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKF 248
VG +A KADST+P+V AASICAKV+RD ALK W F EG+Q + +GSGYPGDP TKKF
Sbjct: 169 VGVTVAKKADSTFPIVSAASICAKVTRDYALKGWGFGEGLQAGHEEFGSGYPGDPNTKKF 228
Query: 249 LSENIDPVFGFPQLVRFSWSTASKILK----------EKAVLVEGDEIDDEEEEGENKKT 298
L DPVFG+P LVRFSWSTAS+ LK E+ + + I + + +N+
Sbjct: 229 LQNYRDPVFGYPHLVRFSWSTASEALKEAYHVDWEENEEVIPIGNTSITEFFKMTKNRGA 288
Query: 299 RSIRNFFKPK 308
RS+ +FF +
Sbjct: 289 RSLHDFFTTR 298
>gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti]
gi|108880967|gb|EAT45192.1| AAEL003510-PA [Aedes aegypti]
Length = 335
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 194/265 (73%), Gaps = 21/265 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I S DN++N S IP+ C+ +PCVLG+DEAGRGPVLGPMVYG A+CP +E+LK L
Sbjct: 36 ISSKDNAKNFTYISEIPQICQDEPCVLGVDEAGRGPVLGPMVYGIAFCP-ITKKEVLKKL 94
Query: 77 GCADSKALTEKKRDDILDSICKENAW---LGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
G ADSK LTE+KRD I D + +++ +GW VE+I+PN IC SMLRR K SLNEVS D
Sbjct: 95 GFADSKQLTEEKRDVIFDEMNQKDYAVESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMD 154
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+AIGLIRK I AGVN+ EVYVDTVGPPE Y+ KL +IFP+ ITVA KAD
Sbjct: 155 SAIGLIRKAIEAGVNIAEVYVDTVGPPEKYQAKLKQIFPKFKITVAKKAD---------- 204
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
STYP+V AASICAKVSRD ALK W+F+EG++ N +GSGYPGDPVTK FL
Sbjct: 205 -----STYPIVSAASICAKVSRDHALKVWSFREGLEPGIN-FGSGYPGDPVTKNFLG-TY 257
Query: 254 DPVFGFPQLVRFSWSTASKILKEKA 278
D VFGFP+LVRFSWSTA K L++KA
Sbjct: 258 DLVFGFPRLVRFSWSTAGKALEKKA 282
>gi|156542709|ref|XP_001603515.1| PREDICTED: ribonuclease H2 subunit A-like [Nasonia vitripennis]
Length = 350
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/306 (54%), Positives = 208/306 (67%), Gaps = 26/306 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
D+S N + S IP+ CK +PC LG+DEAGRGPVLGPMVYG AY P + ++LL ++GCAD
Sbjct: 59 DHSVNQVHQSKIPQICKDEPCQLGVDEAGRGPVLGPMVYGIAYAPL-SQKKLLVDMGCAD 117
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK+LTE+KRD I D IC +G+ V+ ISPN I N M RR K SLNEVS ++AI LI+
Sbjct: 118 SKSLTEEKRDTIFDKICDNGDKMGYAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIK 177
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ I +GV V E+YVDTVG PE Y+ KL IFP + I VA KAD ST
Sbjct: 178 QAIDSGVFVAEIYVDTVGKPEKYQAKLEGIFPGIKIVVAKKAD---------------ST 222
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNA-WGSGYPGDPVTKKFLSENIDPVFGF 259
YP+V AASICAKVSRD AL++W F+E EN + +GSGYP DPVTK +LS N+DP+FGF
Sbjct: 223 YPIVSAASICAKVSRDHALRAWQFRE---TENESEYGSGYPNDPVTKSWLSSNVDPIFGF 279
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQLVRFSWSTA KIL+ KAV VE ++ +++ E+K I +F P + ES
Sbjct: 280 PQLVRFSWSTAEKILESKAVAVEWEDPEEDSSAPESK----ISKYFAPSPAKTKES--AR 333
Query: 320 ERHAFF 325
+RH FF
Sbjct: 334 KRHNFF 339
>gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator]
Length = 337
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/322 (51%), Positives = 210/322 (65%), Gaps = 21/322 (6%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK 74
S S D+S N + S +P+ CKS+PC LG+DEAGRGPVLGPMVYG +Y P + ++LL
Sbjct: 37 SLFASCDHSVNKVHFSEVPQMCKSEPCQLGVDEAGRGPVLGPMVYGISYAPL-SRKQLLV 95
Query: 75 NLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDA 134
LGCADSK+LTEKKRD+I D IC+ +GW VE ISPNVI NSM RR K SLNE S +
Sbjct: 96 ELGCADSKSLTEKKRDEIFDGICEHKDCIGWAVEAISPNVIANSMYRRTKVSLNETSMVS 155
Query: 135 AIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIA 194
A LI+ I AGVNV EVYVDTVG PE+Y+ +L +FP + + VA KAD
Sbjct: 156 ATELIKAAIEAGVNVAEVYVDTVGKPETYQARLKAVFPGVKVVVAKKAD----------- 204
Query: 195 SKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
STYP+V AASICAKVSRD A+++W F+E + +GSGYP DPVTKK+LS N+D
Sbjct: 205 ----STYPIVSAASICAKVSRDHAIRAWRFREVDVAFPSEYGSGYPTDPVTKKWLSANVD 260
Query: 255 PVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVE 314
VFGFPQLVRFSWSTA +IL+ A+ VE +E ++ E K I +FF + +
Sbjct: 261 GVFGFPQLVRFSWSTAEQILQSNALAVEWEESEETGSPSEQK----ILHFFTRSPSKMLT 316
Query: 315 SPVVEERHAFFKESPYGGSKVF 336
V ++H FF E + V
Sbjct: 317 GAHV-KKHHFFTERCLSNASVL 337
>gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus]
Length = 334
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 213/310 (68%), Gaps = 27/310 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
+++S N + S +P+ C+ +PC LG+DEAGRGPVLGPMVYG +Y P + ++LL +LGCA
Sbjct: 41 SNHSINKVHFSEVPQICRDEPCQLGVDEAGRGPVLGPMVYGISYAPL-SRKQLLVDLGCA 99
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK+LTEKKRD+I D ICK +GW +E ISPNVI NSM RR K SLNEVS +AI LI
Sbjct: 100 DSKSLTEKKRDEIFDDICKHKDSIGWAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLI 159
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ I AGVNV E+YVDTVG PESY+ +L +FP + I VA KAD +
Sbjct: 160 QGAIEAGVNVAEIYVDTVGKPESYQARLKGVFPGVKIVVAKKAD---------------A 204
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
TYP+V AASICAKVSRD AL++W F+EG I +GSGYP DPVTK +LSEN+D VFGF
Sbjct: 205 TYPIVSAASICAKVSRDHALRAWRFREGDSI-GTEYGSGYPTDPVTKNWLSENVDAVFGF 263
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF--KPKADENVESPV 317
PQLVRFSWSTA +IL+ KA+ VE +E ++ E E ++I FF P NV +
Sbjct: 264 PQLVRFSWSTAEQILESKALAVEWEETEETEMPNE----QTILKFFAKSPTKLPNVHT-- 317
Query: 318 VEERHAFFKE 327
++H FF E
Sbjct: 318 --KKHPFFTE 325
>gi|357625234|gb|EHJ75743.1| hypothetical protein KGM_02725 [Danaus plexippus]
Length = 276
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/299 (53%), Positives = 205/299 (68%), Gaps = 26/299 (8%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LG+DEAGRGPVLGPMVYG AYCP + N+ +L++LGCADSKALTE+KRD+I + E
Sbjct: 1 MLGVDEAGRGPVLGPMVYGIAYCPINQNK-VLESLGCADSKALTEEKRDEIFLKMLTEKE 59
Query: 102 WL---GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+ GWM E+ISPN I NSM +R K+SLNEVS ++AI LI+K I G N+ EVYVDTVG
Sbjct: 60 AVDNVGWMAEVISPNYISNSMYKRAKHSLNEVSMNSAISLIKKTIELGGNITEVYVDTVG 119
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
PPE Y+ +L EIFP++ ITVA KADS Y P+V AASI AKV+RD A
Sbjct: 120 PPEKYQARLKEIFPDIKITVAKKADSIY---------------PIVSAASIVAKVTRDHA 164
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
LK W F EG++I + +GSGYPGDP+TKKF+ E ID +FG+P LVRFSWSTA L+E+A
Sbjct: 165 LKVWEFPEGLEINHKDFGSGYPGDPLTKKFIREQIDRIFGYPLLVRFSWSTAELALQERA 224
Query: 279 VLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKESPYGGSKVFE 337
++IDDE + + K T++I +FF PK + +RH FF+E S FE
Sbjct: 225 AKCSFEDIDDENTK-KPKGTQAISSFFSPKNERK------RKRHKFFEERNLTMSNAFE 276
>gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta]
Length = 353
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 188/258 (72%), Gaps = 17/258 (6%)
Query: 22 NSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADS 81
+S N I S +P+ CK +PC LG+DEAGRGPVLGPMVYG +Y P + ++LL +LGCADS
Sbjct: 62 HSVNKIHFSAVPKICKDEPCQLGVDEAGRGPVLGPMVYGISYAPL-SQKQLLVDLGCADS 120
Query: 82 KALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK 141
K+LTEKKRD+I D IC+ +GW +E ISPN+I NSM RR K SLNEVS +A LI+
Sbjct: 121 KSLTEKKRDEIFDDICERKENIGWAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQG 180
Query: 142 VIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
I AGVNV E+YVDTVG PESY+ +L +FP + I VA KAD +TY
Sbjct: 181 AIEAGVNVAEIYVDTVGKPESYQARLKGVFPGIKIVVAKKAD---------------ATY 225
Query: 202 PVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ 261
P+V AASICAKV+RD A+++W F+EG IE +GSGYP DPVTKK+LS N+D VFGFPQ
Sbjct: 226 PIVSAASICAKVTRDHAIRAWRFREGENIETQ-YGSGYPTDPVTKKWLSTNVDRVFGFPQ 284
Query: 262 LVRFSWSTASKILKEKAV 279
LVRFSWSTA +IL+ KA+
Sbjct: 285 LVRFSWSTAEQILESKAL 302
>gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
Length = 334
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 174/315 (55%), Positives = 213/315 (67%), Gaps = 28/315 (8%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I DN+++ + S IP+ CK +PCVLG+DEAGRGPVLGPMVYG A+ P D +++LK L
Sbjct: 35 IADQDNAKSFVYLSDIPQLCKDEPCVLGVDEAGRGPVLGPMVYGIAFSPIDK-KDVLKKL 93
Query: 77 GCADSKALTEKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
G ADSK LTE+KR+ I D + K++ +GW VE+ISPN I SMLRR K SLNEVS D
Sbjct: 94 GFADSKQLTEEKREHIFDEMNKQDFATESIGWAVEVISPNDISMSMLRRSKRSLNEVSMD 153
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+AIGLI K I AGVN+ EVYVDTVGPPE Y+ KL IFP ITVA K
Sbjct: 154 SAIGLIHKAIEAGVNIAEVYVDTVGPPEKYQAKLKLIFPNFKITVAKK------------ 201
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
ADSTY +V AASICAKVSRD ALK W F+EG E +GSGYPGDPVTKKFL +
Sbjct: 202 ---ADSTYLIVSAASICAKVSRDHALKVWKFREGTDPEVK-FGSGYPGDPVTKKFLG-DF 256
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGE-NKKTRSIRNFFKPKADEN 312
D VFGFP+LVRFSWSTAS L +KA VE D+ D+E+E+ + + + +F AD N
Sbjct: 257 DRVFGFPRLVRFSWSTASNALDKKAFDVEFDDEDEEQEKAKATYGSEKLSKYF--AADRN 314
Query: 313 VESPVVEERHAFFKE 327
+ +RH +F+E
Sbjct: 315 EQ----RKRHEYFRE 325
>gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
Length = 303
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/318 (48%), Positives = 214/318 (67%), Gaps = 29/318 (9%)
Query: 13 VESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL 72
++ C DN+++ ++ S +P+ K +PC LGIDEAGRGPVLGPMVYG YCP + ++
Sbjct: 1 MDLCDFETDNTKSCVVGSEVPDVTKGEPCCLGIDEAGRGPVLGPMVYGICYCPL-SGQDR 59
Query: 73 LKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSH 132
LK++G ADSK LTE++R+ + ++I ++GW + I++PN I N MLRR KY+LN +SH
Sbjct: 60 LKDMGFADSKTLTEEQREKLFEAIAGAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSH 119
Query: 133 DAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA 192
D AIGLI++ + +GVN++EVYVDTVG Y+ KL IFP+L ITV K
Sbjct: 120 DTAIGLIQRTLDSGVNLQEVYVDTVGDATKYQDKLKGIFPDLDITVTPK----------- 168
Query: 193 IASKADSTYPVVGAASICAKVSRDSALKSWTF---QEGIQIENNAWGSGYPGDPVTKKFL 249
AD+ +P+V AASICAKV+RD A+K WTF ++G I + +GSGYP DP TKK+L
Sbjct: 169 ----ADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNTI-SRKFGSGYPSDPETKKWL 223
Query: 250 SENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKA 309
+ ++PVFGFPQ VRFSWSTASKIL +KAV V D+E+E E T S+ +FF K
Sbjct: 224 ASMVEPVFGFPQFVRFSWSTASKILDDKAVPVNW----DDEDEDEKAATPSVMSFFAAKG 279
Query: 310 DENVESPVVEERHAFFKE 327
E P +++H +F+E
Sbjct: 280 ----EDP-KQKKHQYFQE 292
>gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus
kowalevskii]
Length = 303
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/304 (50%), Positives = 201/304 (66%), Gaps = 22/304 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
+N N I+ S +PE CKS+PC GIDEAGRGPVLGPMVYG YCP NE+L + +G AD
Sbjct: 11 NNGNNYIVRSEVPEICKSEPCCFGIDEAGRGPVLGPMVYGICYCPISKNEQLAE-MGFAD 69
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L+E++R+++ I + N LG+ +E++SPN+I NSM RR K SLN VS D+AI L+R
Sbjct: 70 SKTLSEEQREELFTKIYEANQVLGYKMEVLSPNIISNSMFRRTKCSLNTVSKDSAIKLLR 129
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
I G N++EVYVDTVG Y+ L E+FP+L ITV K AD+
Sbjct: 130 LTIEEGANIKEVYVDTVGDASKYQAYLKELFPDLEITVTPK---------------ADAK 174
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+P+V AASICAKV RD A+KSW F E +I +GSGYP DP TK++LS ++PVFGFP
Sbjct: 175 FPIVSAASICAKVCRDRAVKSWQFPEFDEINETPYGSGYPNDPATKQWLSNVMEPVFGFP 234
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
+ VRFSWSTA KIL+EKAV V D DDE+ + K T S+ +FF K + P +++
Sbjct: 235 RFVRFSWSTADKILEEKAVPVYWD--DDEDGDNGAKGTPSVMSFFSSKDSD----PRLKK 288
Query: 321 RHAF 324
H F
Sbjct: 289 HHYF 292
>gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
Length = 301
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 153/315 (48%), Positives = 210/315 (66%), Gaps = 31/315 (9%)
Query: 16 CIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN 75
C DN+++ ++ S +P+ K +PC LGIDEAGRGPVLGPMVYG YCP + ++ LK+
Sbjct: 4 CDFETDNTKSCVVGSEVPDVTKGEPCCLGIDEAGRGPVLGPMVYGICYCPL-SGQDRLKD 62
Query: 76 LGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAA 135
+G ADSK LTE++R+ + ++I ++GW + I++PN I N MLRR KY+LN +SHD A
Sbjct: 63 MGFADSKTLTEEQREKLFEAIAGAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTA 122
Query: 136 IGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIAS 195
IGLI++ + +GVN++EVYVDTVG Y+ KL IFP+L ITV K
Sbjct: 123 IGLIQRTLDSGVNLQEVYVDTVGDATKYQDKLKGIFPDLDITVTPK-------------- 168
Query: 196 KADSTYPVVGAASICAKVSRDSALKSWTF---QEGIQIENNAWGSGYPGDPVTKKFLSEN 252
AD+ +P+V AASICAKV+RD A+K WTF ++G I + +GSGYP DP TKK+L+
Sbjct: 169 -ADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNSI-SRKFGSGYPSDPETKKWLASM 226
Query: 253 IDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADEN 312
++PVFGFPQ VRFSWSTASKIL +KAV V + +E E T S+ +FF K
Sbjct: 227 VEPVFGFPQFVRFSWSTASKILDDKAVPV------NWSDEDEKAATPSVMSFFAAKG--- 277
Query: 313 VESPVVEERHAFFKE 327
E P +++H +F+E
Sbjct: 278 -EDP-KQKKHQYFQE 290
>gi|72007775|ref|XP_782683.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/327 (50%), Positives = 212/327 (64%), Gaps = 25/327 (7%)
Query: 1 MEEIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYG 60
MEE A+ V ++ ++N N N II S IP+ CK +PC GIDEAGRGPVLGPMVYG
Sbjct: 14 MEESQDAAAVIDLTEFDKNNSN--NAIIQSKIPQICKDEPCCFGIDEAGRGPVLGPMVYG 71
Query: 61 TAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSML 120
T++CP N +L LG ADSK L E +R+ ++ SI + ++G+ VEI+SPN I NSML
Sbjct: 72 TSFCPISWNTQL-GELGFADSKTLNEGQREALMKSIQDASDYMGYKVEILSPNYIANSML 130
Query: 121 RRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVAS 180
RR K+SLN VS D+AIGL+R +A GV V+EVYVDTVG + Y+ KL +FP+L ITV
Sbjct: 131 RRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQDKLKGLFPDLDITVCP 190
Query: 181 KADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYP 240
K ADS +P+V AASICAKV+RD A W F E I+ +GSGYP
Sbjct: 191 K---------------ADSKFPIVSAASICAKVTRDRATTGWKFVEKNDIDKENYGSGYP 235
Query: 241 GDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRS 300
DP TKK+L+ N+DPVFGF Q VRFSWST+S IL + A V+ ++ D+EEE K T S
Sbjct: 236 SDPATKKWLAGNVDPVFGFSQFVRFSWSTSSIILDDHAFPVQWEDDDEEEEAA--KGTAS 293
Query: 301 IRNFFKPKADENVESPVVEERHAFFKE 327
+ +FF PK + +++H FF E
Sbjct: 294 LLSFFAPK-----NADARQKKHQFFNE 315
>gi|115896475|ref|XP_001199108.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 163/327 (49%), Positives = 211/327 (64%), Gaps = 25/327 (7%)
Query: 1 MEEIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYG 60
MEE A+ V ++ ++N N N II S IP+ CK +PC GIDEAGRGPVLGPMVYG
Sbjct: 14 MEESQDAAAVIDLTEFDKNNSN--NAIIQSKIPQICKDEPCCFGIDEAGRGPVLGPMVYG 71
Query: 61 TAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSML 120
T++CP N +L LG ADSK L E +R+ ++ SI + ++G+ VEI+SPN I NSML
Sbjct: 72 TSFCPISWNTQL-GELGFADSKTLNEGQREALMKSIQDASDYMGYKVEILSPNYIANSML 130
Query: 121 RRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVAS 180
RR K+SLN VS D+AIGL+R +A GV V+EVYVDTVG + Y+ KL +FP+L ITV
Sbjct: 131 RRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQDKLKGLFPDLDITVCP 190
Query: 181 KADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYP 240
K ADS +P+V AASICAKV+RD A W F E + +GSGYP
Sbjct: 191 K---------------ADSKFPIVSAASICAKVTRDRATTGWKFVETNDFDKENYGSGYP 235
Query: 241 GDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRS 300
DP TKK+L+ N+DPVFGF Q VRFSWST+S IL + A V+ ++ D+EEE K T S
Sbjct: 236 SDPATKKWLAGNVDPVFGFSQFVRFSWSTSSLILDDHAFPVQWEDDDEEEEAA--KGTAS 293
Query: 301 IRNFFKPKADENVESPVVEERHAFFKE 327
+ +FF PK + +++H FF E
Sbjct: 294 LLSFFAPK-----NADARQKKHQFFNE 315
>gi|405952554|gb|EKC20351.1| Ribonuclease H2 subunit A [Crassostrea gigas]
Length = 299
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 153/308 (49%), Positives = 207/308 (67%), Gaps = 25/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
+DN +N +I STIP+ K++PC LGIDEAGRGPVLGPMVYG + P E+ +G A
Sbjct: 8 SDNMKNSVIESTIPDCIKTEPCWLGIDEAGRGPVLGPMVYGICFSPLSLREKF-GEMGFA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK LTE++R+ I + IC + + W+VE++SP I N ML R KY+LN +SHD AI L+
Sbjct: 67 DSKTLTEEEREGIFERICAASDMMAWIVELLSPTFISNGMLSRSKYNLNAISHDCAIRLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
++ + G N+ EVYVDTVG PE Y+ KL +FP + ITVA KADS YP
Sbjct: 127 QRALELGANIAEVYVDTVGDPEKYQAKLRNLFPNIQITVAKKADSLYP------------ 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V AASICAKV RD AL W FQE I + + +GSGYPGDP TK+FLS+++D VFGF
Sbjct: 175 ---IVSAASICAKVCRDRALSKWQFQEKITVHEDGYGSGYPGDPKTKRFLSDSMDKVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRF WSTAS +L++ AV V+ D+ ++EE++ K T +FF+ K + P++
Sbjct: 232 PQFVRFGWSTASVMLQKSAVDVQWDDDEEEEDKDAVKLT----SFFQKKGHD----PML- 282
Query: 320 ERHAFFKE 327
+RH++FK+
Sbjct: 283 DRHSYFKD 290
>gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi]
Length = 346
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/290 (54%), Positives = 191/290 (65%), Gaps = 41/290 (14%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLG--------------------- 55
I DN++N + S IP+ CK +PC+LG+DEAGRGPVLG
Sbjct: 24 IGQQDNAKNFVYISDIPQLCKDEPCMLGVDEAGRGPVLGKRDPEPYSERKMKLFCNPMLG 83
Query: 56 PMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN---AWLGWMVEIISP 112
PMVYG A+CP + +++LK+LG ADSK LTE+KRD I D + +++ LGW VE ISP
Sbjct: 84 PMVYGIAFCPL-SKKDILKSLGFADSKQLTEEKRDQIFDEMNQKDYATEALGWAVEAISP 142
Query: 113 NVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFP 172
N I SMLRR K SLNEVS ++AIGLI I AGVN+ EVYVDTVGPPE Y+ KL +IFP
Sbjct: 143 NTISMSMLRRTKCSLNEVSMNSAIGLIHAAIEAGVNIAEVYVDTVGPPEKYQAKLKDIFP 202
Query: 173 ELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIEN 232
+ ITVA KADS TYP+V AASI AKV+RD ALK W F+E E
Sbjct: 203 KFKITVAKKADS---------------TYPIVSAASIAAKVTRDHALKVWQFRERPNEEE 247
Query: 233 NAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
N++GSGYPGDP TKKFL E +D VFGFP+LVRFSWSTA L +KA +E
Sbjct: 248 NSFGSGYPGDPTTKKFLGE-VDLVFGFPRLVRFSWSTAGNALDKKAYDME 296
>gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/313 (48%), Positives = 206/313 (65%), Gaps = 29/313 (9%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS + +SS+IP+ CK++ C LGIDEAGRGPVLGPMVYG +CP E+L KNL AD
Sbjct: 9 DNSVSCRLSSSIPDVCKTEDCCLGIDEAGRGPVLGPMVYGICFCPVSRKEDL-KNLKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+++ + + +++GW ++I+SPN+I SML+R KY+LN +SHDAAIGL++
Sbjct: 68 SKTLTEAERENLFVKLDEAKSFVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ +GV ++EV+VDTVGP E Y+ KLS+ FP + +TV K ADS
Sbjct: 128 YALDSGVQLKEVFVDTVGPAEKYQDKLSQRFPGVEVTVRPK---------------ADSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+P+V AASICAKV+RD A+KSW F E + + +GSGYP DP TK +L + +DPVFG+P
Sbjct: 173 FPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR----SIRNFFKPKADENVESP 316
Q VRFSWSTA +L KAV V DD+EE+GE R S+ ++F N S
Sbjct: 233 QFVRFSWSTAQTLLDSKAVTVHW---DDDEEDGEKAAARQNNTSVLSYFS----RNKPSE 285
Query: 317 VVEER--HAFFKE 327
+ R H FF E
Sbjct: 286 LTHTRDTHRFFTE 298
>gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio]
Length = 307
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/313 (48%), Positives = 206/313 (65%), Gaps = 29/313 (9%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS + +SS+IP+ CK++ C LGIDEAGRGPVLGPMVYG +CP E+L KNL AD
Sbjct: 9 DNSVSCRLSSSIPDLCKTEDCCLGIDEAGRGPVLGPMVYGICFCPVSRKEDL-KNLKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+++ + + +++GW ++I+SPN+I SML+R KY+LN +SHDAAIGL++
Sbjct: 68 SKTLTEAERENLFVKLDEAKSFVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ +GV ++EV+VDTVGP E Y+ KLS+ FP + +TV K ADS
Sbjct: 128 YALDSGVQLKEVFVDTVGPAEKYQDKLSQRFPGVEVTVRPK---------------ADSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+P+V AASICAKV+RD A+KSW F E + + +GSGYP DP TK +L + +DPVFG+P
Sbjct: 173 FPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR----SIRNFFKPKADENVESP 316
Q VRFSWSTA +L KAV V DD+EE+GE R S+ ++F N S
Sbjct: 233 QFVRFSWSTAQTLLDSKAVTVHW---DDDEEDGEKAAARQNNTSVLSYFS----RNKPSE 285
Query: 317 VVEER--HAFFKE 327
+ R H FF E
Sbjct: 286 LTHTRDTHRFFTE 298
>gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio]
gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/313 (48%), Positives = 206/313 (65%), Gaps = 29/313 (9%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS + +SS+IP+ CK++ C LGIDEAGRGPVLGPMVYG +CP E+L KNL AD
Sbjct: 9 DNSVSCRLSSSIPDVCKTEDCCLGIDEAGRGPVLGPMVYGICFCPVSRKEDL-KNLKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+++ + + +++GW ++I+SPN+I SML+R KY+LN +SHDAAIGL++
Sbjct: 68 SKTLTEAERENLFVKLDEAKSFVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ +GV ++EV+VDTVGP E Y+ KLS+ FP + +TV K ADS
Sbjct: 128 YALDSGVQLKEVFVDTVGPAEKYQDKLSQRFPGVEVTVRPK---------------ADSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+P+V AASICAKV+RD A+KSW F E + + +GSGYP DP TK +L + +DPVFG+P
Sbjct: 173 FPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR----SIRNFFKPKADENVESP 316
Q VRFSWSTA +L KAV V DD+EE+GE R S+ ++F N S
Sbjct: 233 QFVRFSWSTAQTLLDSKAVTVHW---DDDEEDGEKAAARQNNTSVLSYFS----RNKPSE 285
Query: 317 VVEER--HAFFKE 327
+ R H FF E
Sbjct: 286 LTHTRDIHRFFTE 298
>gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis]
gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/308 (48%), Positives = 201/308 (65%), Gaps = 25/308 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS+N ++SS +PE C+++ C LGIDEAGRGPVLGPMVYG YCP ++L ++L AD
Sbjct: 9 DNSQNRLLSSPVPEICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARKKDL-QDLKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L+E +R+ + + + + ++GW + I+SPN+I SM +R KY+LN +SHD AIGLI+
Sbjct: 68 SKTLSEAERERLFEKLNSTSDYIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ AGV ++EV++DTVGP E Y+ KL +IFPEL +TV KA DS
Sbjct: 128 FALDAGVQLKEVFLDTVGPAEKYQDKLKKIFPELDVTVRPKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASICAKV+RD +K W F E + + +GSGYP DP TK +LS ++DPVFG+P
Sbjct: 173 FPVVSAASICAKVARDRVVKEWKFVEDLGDPDAEYGSGYPNDPKTKDWLSRHLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVE-GDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
Q VRFSWST IL KA V GDE DD G T S+ +FF A ++ P
Sbjct: 233 QFVRFSWSTTQTILGNKAAPVSWGDEDDD---SGGKSSTPSVLSFF--SAPKDASQP--- 284
Query: 320 ERHAFFKE 327
+ H FF+E
Sbjct: 285 QSHRFFQE 292
>gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/308 (48%), Positives = 201/308 (65%), Gaps = 25/308 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS+N ++SS +PE C+++ C LGIDEAGRGPVLGPMVYG YCP ++L ++L AD
Sbjct: 9 DNSQNRLLSSPVPEICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARKKDL-QDLKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L+E +R+ + + + + ++GW + I+SPN+I SM +R KY+LN +SHD AIGLI+
Sbjct: 68 SKTLSEAERERLFEKLNSTSDYIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ AGV ++EV++DTVGP E Y+ KL +IFPEL +TV KA DS
Sbjct: 128 FALDAGVQLKEVFLDTVGPAEKYQDKLKKIFPELDVTVRPKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASICAKV+RD +K W F E + + +GSGYP DP TK +LS ++DPVFG+P
Sbjct: 173 FPVVSAASICAKVARDRVVKDWKFVEDLGDPDAEYGSGYPNDPKTKDWLSRHLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVE-GDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
Q VRFSWST IL KA V GDE DD G T S+ +FF A ++ P
Sbjct: 233 QFVRFSWSTTQTILGNKAAPVSWGDEDDD---SGGKSSTPSVLSFF--SAPKDASQP--- 284
Query: 320 ERHAFFKE 327
+ H FF+E
Sbjct: 285 QSHRFFQE 292
>gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis]
Length = 300
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 198/307 (64%), Gaps = 24/307 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ + ++ S P +C++QPC LGIDEAGRGPVLGPMVYG YCP +L + + AD
Sbjct: 9 DNAVSCLLDSAAPAACRTQPCCLGIDEAGRGPVLGPMVYGICYCPVARQGDL-EAIKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + + ++GW + I+SPN I SM RR KY+LN +SHD AIGLI+
Sbjct: 68 SKTLTEAQREQLFEKLDAAKDFVGWALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ +GV V EV+VDTVGP E Y++KL + FP L +TV KA DS
Sbjct: 128 HALDSGVQVAEVFVDTVGPAEKYQEKLKQQFPGLEVTVKPKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASICAKV+RD +K+W F E ++ ++ +GSGYP DP TK++L++ +DPVFGFP
Sbjct: 173 FPVVSAASICAKVARDRVVKNWKFVEALENVDSDYGSGYPNDPKTKEWLTQCLDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSWSTA IL+ KAV V DD E++ K +S+ ++F K ++P
Sbjct: 233 QFVRFSWSTAQVILENKAVAVRW---DDTEDDPSQKSAQSLLSYFARK-----DTPTRRP 284
Query: 321 RHAFFKE 327
H FF E
Sbjct: 285 AHRFFYE 291
>gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis]
gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis]
Length = 302
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 151/308 (49%), Positives = 203/308 (65%), Gaps = 24/308 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS++ ++SS +PE C+++ C LGIDEAGRGPVLGPMVYG YCP ++L ++ AD
Sbjct: 9 DNSQSRLLSSPVPEICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARKKDL-QDSKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L+E R+ + + + + ++GW + I+SPNVI SM +R KY+LN +SHD AIGLI+
Sbjct: 68 SKTLSEADRERLFEKLNGSSDYIGWALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ AGV + EV+VDTVGP E Y++KL +IFPEL +TV KA DS
Sbjct: 128 FALDAGVQLTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASICAKV+RD +K W F E + + +GSGYP DP TK++LS ++DPVFG+P
Sbjct: 173 FPVVSAASICAKVARDRVVKDWKFVEDLGELDADYGSGYPNDPKTKEWLSRHLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVE-GDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
Q VRFSWSTA IL KA V GDE D++ G T S+ +FF A ++V P
Sbjct: 233 QFVRFSWSTAQTILDNKATPVAWGDE--DDDSAGGKSSTPSVLSFF--SAPKDVSQP--- 285
Query: 320 ERHAFFKE 327
+ H FF+E
Sbjct: 286 QSHRFFQE 293
>gi|432844392|ref|XP_004065747.1| PREDICTED: ribonuclease H2 subunit A-like [Oryzias latipes]
Length = 306
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 148/316 (46%), Positives = 204/316 (64%), Gaps = 26/316 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ + +SS IP+ C+++ C LGIDEAGRGPVLGPMVYG +CP +EL K+L AD
Sbjct: 9 DNTVSCRLSSQIPDICRTEDCCLGIDEAGRGPVLGPMVYGICFCPVSKKQEL-KDLKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE++R+ + ++ + +++GW + ++SPN I SML+R KY+LN +SHD AIGLI+
Sbjct: 68 SKTLTEEERERLFHNLDEAKSYVGWALHVLSPNTISTSMLQRTKYNLNALSHDTAIGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ +GV ++E+YVDTVGP E Y++KLS+ FP + +TV KA DS
Sbjct: 128 YALDSGVQLKEIYVDTVGPAEKYEEKLSQRFPGIEVTVRPKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASICAKV+RD +K W F E + + +GSGYP DP TK +L + +DPVFG+P
Sbjct: 173 FPVVSAASICAKVARDRVVKGWKFAEDLGDVDADYGSGYPNDPKTKAWLLKYLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR----SIRNFFKPKADENVESP 316
Q VRFSWSTA +L KAV V DD+EE+GE R S+ +FF A + +S
Sbjct: 233 QFVRFSWSTAQTLLDSKAVTV---HWDDDEEDGEKAAKRLNNKSMLSFFSASAGSDDQS- 288
Query: 317 VVEERHAFFKESPYGG 332
+ H FF + G
Sbjct: 289 --RQTHRFFTDRRLRG 302
>gi|49115760|gb|AAH73515.1| LOC443655 protein, partial [Xenopus laevis]
Length = 305
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/317 (47%), Positives = 206/317 (64%), Gaps = 26/317 (8%)
Query: 12 EVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE 71
E+E R+N SR ++SS +P+ C+++ C LGIDEAGRGPVLGPMVYG YCP ++
Sbjct: 5 ELEEFERNNSQSR--LLSSPVPQICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARKKD 62
Query: 72 LLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVS 131
L ++ ADSK L+E R+ + + + + ++GW + I+SPN+I SM +R KY+LN +S
Sbjct: 63 L-QDSKVADSKTLSEADRERLFEKLNGSSDYIGWALHILSPNIISTSMQQRAKYNLNALS 121
Query: 132 HDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGA 191
HD AIGLI+ + AGV + EV+VDTVGP E Y++KL +IFPEL +TV KA
Sbjct: 122 HDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKA--------- 172
Query: 192 AIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSE 251
DS +PVV AASICAKV+RD +K W F E + + +GSGYP DP TK++LS
Sbjct: 173 ------DSLFPVVSAASICAKVARDRVVKDWKFVEDLGELDADYGSGYPNDPKTKEWLSR 226
Query: 252 NIDPVFGFPQLVRFSWSTASKILKEKAVLVE-GDEIDDEEEEGENKKTRSIRNFFKPKAD 310
++DPVFG+PQ VRFSWSTA IL KA V GDE D++ G T S+ +FF A
Sbjct: 227 HLDPVFGYPQFVRFSWSTAQTILDNKATPVAWGDE--DDDSAGGKSSTPSVLSFF--SAP 282
Query: 311 ENVESPVVEERHAFFKE 327
++V P + H FF+E
Sbjct: 283 KDVSQP---QSHRFFQE 296
>gi|348520822|ref|XP_003447926.1| PREDICTED: ribonuclease H2 subunit A-like [Oreochromis niloticus]
Length = 308
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 145/311 (46%), Positives = 200/311 (64%), Gaps = 24/311 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS + + S IPE CK++ C LGIDEAGRGPVLGPMVYG +CP EEL K++ AD
Sbjct: 9 DNSVSCRLVSEIPEVCKTEDCCLGIDEAGRGPVLGPMVYGICFCPLSKKEEL-KDMKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+++ + + + +++GW ++I+SPN I MLRR KY+LN +SHD AI L++
Sbjct: 68 SKTLTEAERENLFEKLVEAKSYVGWALQILSPNTISTCMLRRTKYNLNALSHDTAIDLVQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ +GV ++E+YVDTVGP + Y+ KLS+ FP + +TV KA DS
Sbjct: 128 YALDSGVQLKEIYVDTVGPADKYEVKLSQRFPGIQVTVRPKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASICAKV+RD +K W F E + + +GSGYP DP TK +L + +DPVFG+P
Sbjct: 173 FPVVSAASICAKVARDRVVKGWNFAEDLGEVDTDYGSGYPNDPKTKAWLLKYLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR----SIRNFFKPKADENVESP 316
Q VRFSWSTA ++ KAV V DD+EE+GE R S+ ++F + N ++
Sbjct: 233 QFVRFSWSTAQTLMDSKAVNV---HWDDDEEDGEKAAQRQNNKSMLSYFSVSSGGNNQN- 288
Query: 317 VVEERHAFFKE 327
+ H FF E
Sbjct: 289 ATHQAHRFFTE 299
>gi|340380420|ref|XP_003388720.1| PREDICTED: ribonuclease H2 subunit A-like [Amphimedon
queenslandica]
Length = 320
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/320 (47%), Positives = 199/320 (62%), Gaps = 21/320 (6%)
Query: 8 SNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKD 67
S+V +V I S NL S +P C++GIDEAGRGPVLGPMVYG +YCP
Sbjct: 12 SSVVDVSGFIDSPLGVHNL--QSAVPTITCQDECLMGIDEAGRGPVLGPMVYGISYCPIT 69
Query: 68 NNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSL 127
++L K L ADSK L+ +R+D+ +I + N WLGW I+SPN + N MLRR KY+L
Sbjct: 70 KTKDLEK-LKFADSKVLSVSQREDLYHTITECNEWLGWKACILSPNYLSNCMLRRSKYNL 128
Query: 128 NEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYP 187
N +SHD AI LIRKV++ GV + EVYVDTVG PESY+ KL IFP+L +TV K
Sbjct: 129 NSISHDTAIDLIRKVLSDGVKLTEVYVDTVGKPESYQSKLESIFPQLKVTVTKK------ 182
Query: 188 VVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKK 247
ADS +P+V AASICAKV RD+ L W F EG + ++G GY D T
Sbjct: 183 ---------ADSLFPIVSAASICAKVIRDACLTEWKFTEGDDCYSKSFGCGYTSDTTTIN 233
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
++ + IDPVFGFP LVRFSWSTASK+L+ +LV+ + D++EE+ N S+ F
Sbjct: 234 WMKDCIDPVFGFPTLVRFSWSTASKMLESNGLLVKWPDDDEDEEQKANCPKISL---FFG 290
Query: 308 KADENVESPVVEERHAFFKE 327
KA N + P +RH +F+E
Sbjct: 291 KAKTNGDGPKPAKRHRYFEE 310
>gi|351711560|gb|EHB14479.1| Ribonuclease H2 subunit A [Heterocephalus glaber]
Length = 298
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 143/308 (46%), Positives = 197/308 (63%), Gaps = 26/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP+ +L + L A
Sbjct: 8 KDNTGRSRLSSPVPAVCREEPCVLGVDEAGRGPVLGPMVYAICYCPESRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ +GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLSESERDRLFAKMEEDQDLVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVG PE Y+K+L + FPE+ +TV +KAD+ YPV
Sbjct: 127 QYALDQGVKVTQVFVDTVGLPEMYQKRLQQRFPEITVTVKAKADALYPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+KSW F E +Q + +GSGYP DP TK +L +++PVFGF
Sbjct: 176 ----VSAASICAKVARDQAVKSWQFVEKLQDLDADYGSGYPNDPKTKAWLRRHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQLVRFSW TA IL+++A V ++ EE+EG R I ++F+ E P
Sbjct: 232 PQLVRFSWRTAQAILEKEAEGVTWEDSATEEQEGH----RRITSYFQS------EGPRAR 281
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 282 APHRYFQE 289
>gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
Length = 299
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 199/306 (65%), Gaps = 25/306 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS++ +++S P++ +++PC LGIDEAGRGPVLG MVYG Y P +E++ K LG AD
Sbjct: 9 DNSKSCVLTSGTPQAAQNEPCCLGIDEAGRGPVLGAMVYGACYYPLSQSEKV-KELGVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE RD++ I +++ +GW+VEIISP+ I ML R KYSLN VSHDAAI LIR
Sbjct: 68 SKVLTEDMRDELFQKINSDDS-VGWLVEIISPSDISTKMLARTKYSLNAVSHDAAINLIR 126
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ I GV V+E+YVDTVG E+Y+ KLSE+FP++ I V KAD+
Sbjct: 127 QSIQKGVQVKEIYVDTVGVAENYQNKLSELFPDITIKV---------------TPKADAL 171
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+P V AASI AKV+RD L +W F E ++ +G GYP DP T+K+L+ N+D VFG+P
Sbjct: 172 FPCVSAASIIAKVTRDKVLSNWKFPEDESYNSSDYGCGYPSDPATQKWLNSNLDKVFGYP 231
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSWST KIL E AV V +++EE +N T S+ +FF K V+ V +
Sbjct: 232 QFVRFSWSTCQKILDESAVRVHW----EDDEEFDNDNTVSLLSFFTQKG---VQEKAV-K 283
Query: 321 RHAFFK 326
RH F +
Sbjct: 284 RHNFLE 289
>gi|410925260|ref|XP_003976099.1| PREDICTED: ribonuclease H2 subunit A-like [Takifugu rubripes]
Length = 310
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 203/310 (65%), Gaps = 20/310 (6%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS + + S IP+ C+++ C LGIDEAGRGPVLGPMVYG +CP EEL K+L AD
Sbjct: 9 DNSVSCRLKSQIPDICRTEDCCLGIDEAGRGPVLGPMVYGICFCPISRKEEL-KDLKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + + + +++GW ++++SPN I NSML+R KY+LN +SHD AIGL++
Sbjct: 68 SKTLTEAEREALFEKMDEAKSYVGWALQVLSPNTISNSMLQRTKYNLNALSHDTAIGLVQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ GV ++EV+VDTVGP + Y+ KLS+IFP + +TV K ADS
Sbjct: 128 HALDCGVQLKEVFVDTVGPADKYEDKLSKIFPGIAVTVRPK---------------ADSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+P+V AASICAKV+RD A+K W F E + + +GSGYP DP TK +L +DPVFG+P
Sbjct: 173 FPIVSAASICAKVARDFAVKHWRFGEDLGEVDADYGSGYPSDPKTKAWLLRYLDPVFGYP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDE---EEEGENKKTRSIRNFFKPKADENVESPV 317
QLVRFSWSTA ++ + V V D+ DD+ E+ + + RS+ ++F A +S
Sbjct: 233 QLVRFSWSTAQTLMDSRGVTVHWDDDDDDEDGEKAAQRRNNRSMLSYFSAAAGGGSQSG- 291
Query: 318 VEERHAFFKE 327
++ H FF +
Sbjct: 292 SDQTHRFFSD 301
>gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
Length = 271
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/278 (49%), Positives = 194/278 (69%), Gaps = 19/278 (6%)
Query: 5 HTASNVTEVESCIRSN--DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTA 62
+ SN+ E+ + S D + + +S IPE C +PC+LG+DEAGRGPVLGPMVY
Sbjct: 9 NVVSNLEEIIEILTSENFDKFGHHLFNSNIPEKCFLEPCILGVDEAGRGPVLGPMVYSVF 68
Query: 63 YCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRR 122
+C N+ ++LK++GC DSK LTEKKR+DI D I + N LGW V+++SPN+I N ML+R
Sbjct: 69 FCSI-NDADILKDIGCTDSKVLTEKKREDIFDLINQNNDKLGWAVDLLSPNLISNRMLQR 127
Query: 123 QKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKA 182
+KYSLNE++ ++ I LI ++ + +++++VDT+GP + Y++KLS++FP +TV SKA
Sbjct: 128 KKYSLNEIAQNSTIKLIESLLEKNITLKDIFVDTIGPADKYQEKLSKLFPNSKVTVKSKA 187
Query: 183 DSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGD 242
D YPVVGAASICAKV RD+A++ W F E I I+ +G+GYPGD
Sbjct: 188 D---------------LLYPVVGAASICAKVIRDTAVQQWKFPEKITIDAE-FGTGYPGD 231
Query: 243 PVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
P TKKFL E+ D VFGFP LVRFSWST++K+L+E+ ++
Sbjct: 232 PKTKKFLLESKDSVFGFPNLVRFSWSTSAKLLEEETLV 269
>gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona
intestinalis]
Length = 292
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 190/309 (61%), Gaps = 32/309 (10%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
N+ N + S IP+ S+PC LGIDEAGRGPVLGPMVY + + P ++L LGC
Sbjct: 8 NNCDENFKLKSDIPKLLTSEPCCLGIDEAGRGPVLGPMVYASCFTPISCKDKL-AGLGCD 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E++R+ + +++ K + ++GWM+ I+SP I SML R KY+LN +SHD AI LI
Sbjct: 67 DSKVLKEEQRESLFETLNKASEYIGWMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
R + GV V EVYVDTVGPP++Y +KL +IFP + TV KAD S
Sbjct: 127 RSALKLGVEVTEVYVDTVGPPQTYAEKLKKIFPSIKFTVEKKAD---------------S 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV RD A+K W F+E + +GSGYP DPVTK +L N+D +FGF
Sbjct: 172 KYPVVSAASICAKVCRDKAVKEWRFRENPDTDTK-YGSGYPADPVTKVWLRNNVDRIFGF 230
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
P VRFSWST SK+L+ +AV V + DDEE E I ++F K +
Sbjct: 231 PSFVRFSWSTTSKLLENEAVPVHWAD-DDEESSNE-----PITSYFSKKGN--------- 275
Query: 320 ERHAFFKES 328
RH FF E+
Sbjct: 276 SRHQFFTEN 284
>gi|126322781|ref|XP_001362490.1| PREDICTED: ribonuclease H2 subunit A-like [Monodelphis domestica]
Length = 304
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/309 (46%), Positives = 194/309 (62%), Gaps = 22/309 (7%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ + +SS +PE C+++ C LGIDEAGRGPVLGPMVYG +CP +L + L A
Sbjct: 8 RDNTGSCRLSSPVPELCRTEDCCLGIDEAGRGPVLGPMVYGICFCPLSRLGDL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +R+ + + + ++GW ++I+SPN+I NSM RR KY+LN +SHD A+ L+
Sbjct: 67 DSKTLSEAERERLFGKLDQARDFVGWALDILSPNLISNSMQRRAKYNLNSLSHDTAMALV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVGP + Y++KL E FPEL +TV KA DS
Sbjct: 127 QLALDQGVKVTQVFVDTVGPADKYQQKLQERFPELEVTVRPKA---------------DS 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+PVV AASICAKV+RD +K W F E + +GSGYP DP TK++LS+ +DPVFGF
Sbjct: 172 LFPVVSAASICAKVARDQVVKRWKFLEDLGDLKMDYGSGYPNDPKTKEWLSQCLDPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVE-GDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVV 318
PQ VRFSWSTA IL +AV V +E D G T S+ +FF + ++P
Sbjct: 232 PQFVRFSWSTAQLILDGRAVPVRWWEEAGDPPAAGRGSSTPSLLSFFARR-----QTPTE 286
Query: 319 EERHAFFKE 327
+ H FF E
Sbjct: 287 RQPHRFFHE 295
>gi|348565231|ref|XP_003468407.1| PREDICTED: ribonuclease H2 subunit A-like [Cavia porcellus]
Length = 298
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/307 (45%), Positives = 196/307 (63%), Gaps = 26/307 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP+ +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCCKEPCVLGVDEAGRGPVLGPMVYAICYCPQSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLSENERDRLFSKMQEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTASGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ GVNV +V+VDTVG SY+++L + FP++ +TV +KAD+ YPV
Sbjct: 128 HALDQGVNVTQVFVDTVGLAASYQERLQQRFPDVTVTVKAKADALYPV------------ 175
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
V AASICAKV+RD A+KSW F E Q + +GSGYP DP TK +L +++PVFGFP
Sbjct: 176 ---VSAASICAKVARDQAVKSWQFVEKEQDLDADYGSGYPNDPKTKAWLRRHVEPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
QLVRFSW TA IL+ +A V ++ EE+EG +R I ++F+ E P
Sbjct: 233 QLVRFSWRTAQAILETEAENVTWEDSALEEQEG----SRKITSYFQG------EGPQARH 282
Query: 321 RHAFFKE 327
H +F+E
Sbjct: 283 PHRYFQE 289
>gi|432095927|gb|ELK26843.1| Ribonuclease H2 subunit A [Myotis davidii]
Length = 299
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 198/307 (64%), Gaps = 25/307 (8%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ ++S +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLNSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPMSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL++
Sbjct: 68 SKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ GVNV +V+VDTVG PE+Y+++L + FP + +TV +KAD+ YPV
Sbjct: 128 YALDQGVNVAQVFVDTVGMPETYQERLQQRFPGIEVTVKAKADALYPV------------ 175
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
V AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L +N++PVFGFP
Sbjct: 176 ---VSAASICAKVARDQAVKNWQFVEKLQDLDTDYGSGYPNDPKTKAWLRKNVEPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSW TA IL+++A V +++ ++EG+ + I ++F K P
Sbjct: 233 QFVRFSWRTAQSILEKEAEGVTWEDLPTGDQEGQGR----ITSYFNEKPGNRPHLP---- 284
Query: 321 RHAFFKE 327
H +F+E
Sbjct: 285 -HRYFQE 290
>gi|426228912|ref|XP_004008539.1| PREDICTED: ribonuclease H2 subunit A [Ovis aries]
Length = 299
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 198/308 (64%), Gaps = 25/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP E+L + L A
Sbjct: 8 RDNTGRCRLSSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+++L + FP + +TV +KAD+ YPV
Sbjct: 127 QFALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L +++DPVFGF
Sbjct: 176 ----VSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSW TA IL+ +A V+ ++ + ++EG K I+++F + P
Sbjct: 232 PQFVRFSWRTAQSILETEAEDVKWEDSETGDQEGPGK----IKSYFSESPQTCLRLP--- 284
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 285 --HRYFQE 290
>gi|403302260|ref|XP_003941780.1| PREDICTED: ribonuclease H2 subunit A [Saimiri boliviensis
boliviensis]
Length = 300
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 188/284 (66%), Gaps = 16/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLSESERERLFAKMQEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+K+L + FP + +TV +KAD+ YPV
Sbjct: 127 QYALDQGVNVTQVFVDTVGMPETYQKRLQQSFPGIEVTVKAKADALYPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 176 ----VSAASICAKVARDQAVKNWQFVEKLQDLDTDYGSGYPNDPKTKVWLKEHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E++EG K T N
Sbjct: 232 PQFVRFSWRTAQTILEKEAKDVIWEDSAPEDQEGLGKITSYFLN 275
>gi|402904417|ref|XP_003915042.1| PREDICTED: ribonuclease H2 subunit A [Papio anubis]
gi|355703198|gb|EHH29689.1| Ribonuclease H2 subunit A [Macaca mulatta]
gi|380808814|gb|AFE76282.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|383415189|gb|AFH30808.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|384944794|gb|AFI36002.1| ribonuclease H2 subunit A [Macaca mulatta]
Length = 300
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 186/284 (65%), Gaps = 16/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P +C+ +PCVLG+DEAGRGPVLGPMVY YCP + +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAACRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSHLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + + ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKMEENRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 127 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 176 ----VSAASICAKVARDQAVKKWKFVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E++EG K T N
Sbjct: 232 PQFVRFSWRTAQTILEKEAEDVIWEDSTPEDQEGLRKITSYFLN 275
>gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus]
gi|110816412|sp|Q2TBT5.1|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus]
gi|296485915|tpg|DAA28030.1| TPA: ribonuclease H2 subunit A [Bos taurus]
gi|440902072|gb|ELR52915.1| Ribonuclease H2 subunit A [Bos grunniens mutus]
Length = 299
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 196/308 (63%), Gaps = 25/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP E+L + L A
Sbjct: 8 RDNTGRCRLSSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+++L + FP + +TV +KA D+
Sbjct: 127 QFALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L +++DPVFGF
Sbjct: 172 LYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSW TA IL+ +A V+ ++ E G+ K I+++F + P
Sbjct: 232 PQFVRFSWRTAQSILESEAEDVKW----EDSETGDPKGPGKIKSYFSESPQTCLRLP--- 284
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 285 --HRYFQE 290
>gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta]
Length = 300
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 186/284 (65%), Gaps = 16/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P +C+ +PCVLG+DEAGRGPVLGPMVY YCP + +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAACRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSHLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + + ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKMEENRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 127 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 176 ----VSAASICAKVARDQAVKKWKFVEKLQDSDTDYGSGYPNDPKTKVWLKEHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E++EG K T N
Sbjct: 232 PQFVRFSWRTAQTILEKEAEDVIWEDSTPEDQEGLRKITSYFLN 275
>gi|346986447|ref|NP_001231373.1| ribonuclease H2 subunit A [Sus scrofa]
Length = 301
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 196/308 (63%), Gaps = 23/308 (7%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ ++S +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLNSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVG PE+Y+++L + FP++ +TV +KA D+
Sbjct: 127 QYALDQGVKVAQVFVDTVGLPETYQERLQQRFPDIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+++W F E +Q + +GSGYP DP TK +L +++DPVFGF
Sbjct: 172 LYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSW TA IL+++A D ++ + G+ + R I+++F + P
Sbjct: 232 PQFVRFSWRTAQSILEKEA----EDVTWEDSQTGDQEGLRKIKSYFSKSPRTH---PCPH 284
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 285 LSHRYFQE 292
>gi|194213064|ref|XP_001495257.2| PREDICTED: ribonuclease H2 subunit A-like [Equus caballus]
Length = 299
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/308 (44%), Positives = 192/308 (62%), Gaps = 25/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ ++S +P C+ QPC LG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLNSPVPAVCRKQPCALGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFARMKEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVG PE+Y+++L + FP + +TV +KADS YP
Sbjct: 127 QYALDQGVKVAQVFVDTVGMPETYQQRLQQRFPGIEVTVKAKADSLYP------------ 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
VV AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L +++PVFGF
Sbjct: 175 ---VVSAASICAKVARDQAVKNWKFVEKLQDSDTDYGSGYPNDPKTKAWLRRHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSW TA IL+++A V D+ E++EG + I +F P
Sbjct: 232 PQFVRFSWRTAQSILEKEAEDVVWDDSVAEDQEGVGR----ITAYFDEGLRSRTRLP--- 284
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 285 --HRYFQE 290
>gi|397487580|ref|XP_003814870.1| PREDICTED: ribonuclease H2 subunit A [Pan paniscus]
gi|426387370|ref|XP_004060142.1| PREDICTED: ribonuclease H2 subunit A [Gorilla gorilla gorilla]
Length = 299
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 192/308 (62%), Gaps = 29/308 (9%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKA--VLVEGDEIDDEE----------EEGENKKTRSIRNFFKP 307
PQ VRFSW TA IL+++A V+ E +D+E EG + RS +F
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSASEDQEGLRKITSYFLNEGSQARPRSSHRYFLE 290
Query: 308 KADENVES 315
+ E+ S
Sbjct: 291 RGLESATS 298
>gi|449688727|ref|XP_002166509.2| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 296
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 188/292 (64%), Gaps = 21/292 (7%)
Query: 19 SNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGC 78
S N + ++ S +PE K++PC LGIDEAGRGPVLGPMVY YCP ++L +LG
Sbjct: 7 SKQNRISYVLLSNVPEITKTEPCCLGIDEAGRGPVLGPMVYSVCYCPISMIKKL-SDLGF 65
Query: 79 ADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL 138
ADSK LTE+KRD++L I ++GW ++IISP I N MLRR K +LNE+SH AAI L
Sbjct: 66 ADSKTLTEEKRDNLLSVIENNCDFIGWAIKIISPTEISNEMLRRYKVTLNEISHGAAIEL 125
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
RK I AG N+ E+YVDTVG Y+ KLSE+F + + V K AD
Sbjct: 126 TRKTINAGANITEMYVDTVGDALKYQNKLSEVFDGISVKVTPK---------------AD 170
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
+ +P+V AASICAKV+RD +++W F EG E+ +GSGYP DP TK++L + +DPVFG
Sbjct: 171 ALFPIVSAASICAKVARDRCIQNWQFPEGDIKED--YGSGYPADPKTKQWLKDVVDPVFG 228
Query: 259 FPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKAD 310
FPQ VRFSWST + IL++ A V + DDE EE + KK I FF K +
Sbjct: 229 FPQFVRFSWSTCANILEKHACEVMWE--DDEAEETD-KKIIPITTFFAQKKN 277
>gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes]
gi|410226906|gb|JAA10672.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410251426|gb|JAA13680.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410287834|gb|JAA22517.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410328555|gb|JAA33224.1| ribonuclease H2, subunit A [Pan troglodytes]
Length = 299
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 191/308 (62%), Gaps = 29/308 (9%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALYQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKA--VLVEGDEIDDEE----------EEGENKKTRSIRNFFKP 307
PQ VRFSW TA IL+++A V+ E D+E EG + RS +F
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSASKDQEGLRKITSYFLNEGSQARPRSSHRYFLE 290
Query: 308 KADENVES 315
+ E+ S
Sbjct: 291 RGLESATS 298
>gi|354479535|ref|XP_003501965.1| PREDICTED: ribonuclease H2 subunit A-like [Cricetulus griseus]
Length = 302
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 198/307 (64%), Gaps = 22/307 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++I+SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFSKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 YALDQGVNVTQVFVDTVGMPETYQARLQQRFPGMEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 173 FPVVSAASIFAKVARDQAVKNWQFVESLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSWSTA IL+++A V ++ EE+ G+ + I ++F + + ++
Sbjct: 233 QFVRFSWSTAQAILEKEAEGVTWEDSAAEEDPGQPGR---ITSYFLSQGPQACR---LQI 286
Query: 321 RHAFFKE 327
H +F+E
Sbjct: 287 PHRYFQE 293
>gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus]
Length = 286
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 192/297 (64%), Gaps = 20/297 (6%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP E+L + L A
Sbjct: 8 RDNTGRCRLSSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDT G PE+Y+++L + FP + +TV +KAD+ YPV
Sbjct: 127 QFALDQGVNVAQVFVDTGGLPETYQERLQQRFPGIEVTVKAKADALYPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L +++DPVFGF
Sbjct: 176 ----VSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESP 316
PQ VRFSW TA IL+ +A V+ ++ + ++EG K I+++F V P
Sbjct: 232 PQFVRFSWRTAQSILETEAEDVKWEDSETGDQEGPGK----IKSYFSESPQTCVRLP 284
>gi|431898011|gb|ELK06718.1| Microtubule-associated serine/threonine-protein kinase 1 [Pteropus
alecto]
Length = 1773
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 180/262 (68%), Gaps = 16/262 (6%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ ++S +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L K L A
Sbjct: 8 RDNTGRCRLNSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-KALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFAKMEEDRNFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+++L + FP++ +TV +KA D+
Sbjct: 127 QYALDQGVNVAQVFVDTVGLPETYQERLQQCFPDIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L ++++P+FGF
Sbjct: 172 LYPVVSAASICAKVARDQAVKNWQFVEKLQDLDIDYGSGYPNDPKTKAWLRKHVEPIFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLV 281
PQ VRFSW TA IL+++A +V
Sbjct: 232 PQFVRFSWRTAQSILEKEAEVV 253
>gi|359322070|ref|XP_003639769.1| PREDICTED: ribonuclease H2 subunit A-like [Canis lupus familiaris]
Length = 299
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 138/310 (44%), Positives = 194/310 (62%), Gaps = 29/310 (9%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRQEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLGDL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + K+ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFVKMEKDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVG PE+Y+++L + FP + +TV +KA D+
Sbjct: 127 QYALDQGVKVAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+KSW F E +Q + +GSGYP DP TK +L ++++PVFGF
Sbjct: 172 LYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYGSGYPNDPKTKAWLRKHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKA--VLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPV 317
PQ VRFSW TA IL+++A V+ E D+E G I ++F + P
Sbjct: 232 PQFVRFSWRTAQSILEKEAEGVIWEDSLTGDQEGPGR------IMSYFSKGPRTHPRLP- 284
Query: 318 VEERHAFFKE 327
H +F+E
Sbjct: 285 ----HRYFQE 290
>gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens]
gi|20981704|sp|O75792.2|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Aicardi-Goutieres syndrome 4 protein;
Short=AGS4; AltName: Full=RNase H(35); AltName:
Full=Ribonuclease HI large subunit; Short=RNase HI large
subunit; AltName: Full=Ribonuclease HI subunit A
gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens]
gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens]
gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens]
Length = 299
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 184/284 (64%), Gaps = 17/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E +EG K T N
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLN 274
>gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
Length = 302
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 184/284 (64%), Gaps = 17/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 11 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 69
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 70 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 128
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 129 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 177
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 178 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 233
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E +EG K T N
Sbjct: 234 PQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLN 277
>gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca]
gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca]
Length = 299
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 134/308 (43%), Positives = 195/308 (63%), Gaps = 25/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
D++ ++S +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDSTGRCRLNSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFVKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVGPPE+Y+++L E FP + +TV +KA D+
Sbjct: 127 QYALDQGVKVAQVFVDTVGPPETYQERLQERFPGIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L ++++PVFGF
Sbjct: 172 LYPVVSAASICAKVARDQAVKNWHFVETLQDLDADYGSGYPNDPKTKVWLRKHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSW TA IL+++A V ++ +EG + I ++F + P
Sbjct: 232 PQFVRFSWRTAQSILEKEAEGVLWEDSATGHQEGPGR----IMSYFSKGPQTHPHLP--- 284
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 285 --HRYFQE 290
>gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens]
Length = 299
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 184/284 (64%), Gaps = 17/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQAQLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E +EG K T N
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLN 274
>gi|344282705|ref|XP_003413113.1| PREDICTED: ribonuclease H2 subunit A-like [Loxodonta africana]
Length = 298
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/308 (43%), Positives = 194/308 (62%), Gaps = 26/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
+N+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RNNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFAKMKEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + V V +V+VDTVG PE Y+++L + FP + +TV +KAD+ YPV
Sbjct: 127 QYALDRSVKVTQVFVDTVGLPEKYQERLQQRFPGIEVTVKAKADALYPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A++SW F E +Q + +GSGYP DP TK +L ++++P+FGF
Sbjct: 176 ----VSAASICAKVARDQAVRSWQFVEKLQDVDADYGSGYPNDPKTKAWLKKHVEPIFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSW TA IL+E+A V ++ E++EG R I ++F E P
Sbjct: 232 PQFVRFSWRTAQSILEEEAEGVTWEDSLAEDQEG----LRRITSYFLS------EGPRPR 281
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 282 LPHRYFQE 289
>gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A [Nomascus leucogenys]
Length = 299
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 191/308 (62%), Gaps = 29/308 (9%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQAWLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKA--VLVEGDEIDDEE----------EEGENKKTRSIRNFFKP 307
PQ VRFSW TA IL+++A V+ E +D+E EG + RS +F
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSAPEDQEGLRKITSYFLNEGSQARPRSSHRYFLE 290
Query: 308 KADENVES 315
+ E+ S
Sbjct: 291 RGLESATS 298
>gi|344244502|gb|EGW00606.1| Ribonuclease H2 subunit A [Cricetulus griseus]
Length = 312
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 176/258 (68%), Gaps = 16/258 (6%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++I+SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFSKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 YALDQGVNVTQVFVDTVGMPETYQARLQQRFPGMEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 173 FPVVSAASIFAKVARDQAVKNWQFVESLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKA 278
Q VRFSWSTA IL+++A
Sbjct: 233 QFVRFSWSTAQAILEKEA 250
>gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens]
Length = 299
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/284 (46%), Positives = 183/284 (64%), Gaps = 17/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A ++ E +EG K T N
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDGIWEDSASENQEGLRKITSYFLN 274
>gi|355716672|gb|AES05686.1| ribonuclease H2, subunit A [Mustela putorius furo]
Length = 299
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 195/312 (62%), Gaps = 33/312 (10%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
D++ ++S +P C +PC LG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDSTGRCRLNSPVPAVCCKEPCALGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD AIGL+
Sbjct: 67 DSKTLSESERDRLFVKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAIGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVGPPE+Y+++L + FP + +TV +KA D+
Sbjct: 127 QYALDQGVKVAQVFVDTVGPPETYQEQLQQHFPGIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L ++++PVFGF
Sbjct: 172 LYPVVSAASICAKVARDQAVKNWHFVEDLQGLDADYGSGYPNDPKTKAWLRKHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKA--VLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPV 317
PQ VRFSW TA IL+ +A VL E D+E G I ++F +SP
Sbjct: 232 PQFVRFSWRTAQSILETEAEGVLWEDSPTGDQEGPGR------IMSYFS-------KSPQ 278
Query: 318 VEER--HAFFKE 327
R H +F+E
Sbjct: 279 TLPRLPHRYFQE 290
>gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens]
Length = 299
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 133/284 (46%), Positives = 183/284 (64%), Gaps = 17/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGWVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E +EG K T N
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLN 274
>gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus]
gi|85541053|sp|Q9CWY8.2|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus]
gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus]
Length = 301
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 196/307 (63%), Gaps = 23/307 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ VNV +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 YALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 173 FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSWSTA IL+++A E +D E E + ++ I ++F + ++ +
Sbjct: 233 QFVRFSWSTAQAILEKEA---EDVIWEDSEAEEDPERPGKITSYFS----QGPQTCRPQA 285
Query: 321 RHAFFKE 327
H +F+E
Sbjct: 286 PHRYFQE 292
>gi|391332532|ref|XP_003740688.1| PREDICTED: ribonuclease H2 subunit A-like [Metaseiulus
occidentalis]
Length = 295
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 175/265 (66%), Gaps = 21/265 (7%)
Query: 21 DNSRNLIISSTI-PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DNS NL ISST P C + CVLGIDEAGRGPVLGPMVYGTAY P ++ +G
Sbjct: 9 DNSINLEISSTEEPTLCFEEDCVLGIDEAGRGPVLGPMVYGTAYWPLSKSKHF-GEMGLD 67
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRR--QKYSLNEVSHDAAIG 137
DSK L+E R+ + + KENA GW + ISP I SML + Q+ SLNE+SH+AAI
Sbjct: 68 DSKVLSEADREKLFELYNKENAISGWHLVCISPVTISKSMLAKDNQRESLNELSHNAAIH 127
Query: 138 LIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
LIR + GV V EVYVDTVGPPE Y+ KL +FPE+ ITV + KA
Sbjct: 128 LIRVTLRRGVRVTEVYVDTVGPPEKYEAKLQALFPEIKITV---------------SKKA 172
Query: 198 DSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVF 257
DS + V AASICAKV+RD ALKSW+++EG E GSGYPGDPVTKKFL ++ DP+F
Sbjct: 173 DSLFKCVSAASICAKVARDRALKSWSWREGTTYEKI--GSGYPGDPVTKKFLRDSCDPIF 230
Query: 258 GFPQLVRFSWSTASKILKEKAVLVE 282
GFP + RFSWSTA +L ++ V V+
Sbjct: 231 GFPSVTRFSWSTAEDLLAKEHVKVQ 255
>gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus]
Length = 301
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 196/307 (63%), Gaps = 23/307 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ VNV +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 YALDRNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 173 FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSWSTA IL+++A E +D E E + ++ I ++F + ++ +
Sbjct: 233 QFVRFSWSTAQAILEKEA---EDVIWEDSEAEEDPERPGKITSYFS----QGPQTCRPQA 285
Query: 321 RHAFFKE 327
H +F+E
Sbjct: 286 PHRYFQE 292
>gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei]
gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei]
Length = 323
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 191/292 (65%), Gaps = 28/292 (9%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLGIDEAGRGPVLGPMVY A P D N EL KNLG DSKAL E KR++I D + +
Sbjct: 47 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNTEL-KNLGVDDSKALNEAKREEIFDKMNND 105
Query: 100 ---NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ + + +SP +I SML+R KYSLNEVSHDAAI LI+ A VNV E+ VDT
Sbjct: 106 EEIQQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIKVDT 165
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
VGP +Y+ KL ++FP + I V K ADS +P+V AASI AKV+RD
Sbjct: 166 VGPKATYQAKLEKLFPGISICVTEK---------------ADSLFPIVSAASIAAKVTRD 210
Query: 217 SALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ L++W F+E GI+I N +GSGYPGDP TKKFL ++DP+FGF LVR SW TAS I++
Sbjct: 211 TRLRNWQFKEKGIRIPENGYGSGYPGDPNTKKFLQLSVDPIFGFCSLVRASWKTASAIVE 270
Query: 276 EKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKE 327
+++V +D+E+EG+ +++ + + +PK + E P ++H +FKE
Sbjct: 271 KRSV---PGYWEDDEDEGK-PQSKKMSGWLQPK--DATEVP--PKKHVYFKE 314
>gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus]
gi|81889649|sp|Q5U209.1|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus]
gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus]
gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
Length = 301
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/280 (47%), Positives = 181/280 (64%), Gaps = 17/280 (6%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK LTE +R+ + + ++ ++GW ++I+SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + V V +V+VDTVG PE+Y+ +L + FP + +TV +KADS +PV
Sbjct: 127 QHAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGF
Sbjct: 176 ----VSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGF 231
Query: 260 PQLVRFSWSTASKIL-KEKAVLVEGDEIDDEEEEGENKKT 298
PQ VRFSWSTA IL KE + D +E+ EG + T
Sbjct: 232 PQFVRFSWSTAQAILEKEAESVTWEDSAAEEDPEGPGRIT 271
>gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 299
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 184/284 (64%), Gaps = 17/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+ EAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVAEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KA AA+
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKA--------AAL------ 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 172 -YPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E +EG K T N
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLN 274
>gi|355755510|gb|EHH59257.1| Ribonuclease H2 subunit A [Macaca fascicularis]
Length = 325
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 190/310 (61%), Gaps = 43/310 (13%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDN--NEELLKNLG 77
DN+ +SS +P +C+ +PCVLG+DEAGRGPVLGPMVY YCP + + E LK G
Sbjct: 8 RDNTGRCRLSSPVPAACRKEPCVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVAG 67
Query: 78 --------------------CA--DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVI 115
CA DSK L E +R+ + + + ++GW ++++SPN+I
Sbjct: 68 EPQVWVWEPEVCVWGRDSRVCAGADSKTLLESERERLFAKMEENRDFVGWALDVLSPNLI 127
Query: 116 CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELI 175
SML R KY+LN +SHD A GLI+ + GVNV +V+VDTVG PE+Y+ +L + FP +
Sbjct: 128 STSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIE 187
Query: 176 ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAW 235
+TV +KAD+ YPV V AASICAKV+RD A+K W F E +Q + +
Sbjct: 188 VTVKAKADALYPV---------------VSAASICAKVARDQAVKKWKFVEKLQDSDTDY 232
Query: 236 GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGEN 295
GSGYP DP TK +L E+++PVFGFPQ VRFSW TA IL+++A V ++ E++EG
Sbjct: 233 GSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWEDSTPEDQEG-- 290
Query: 296 KKTRSIRNFF 305
R I ++F
Sbjct: 291 --LRKITSYF 298
>gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus]
Length = 254
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/258 (49%), Positives = 175/258 (67%), Gaps = 16/258 (6%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ VNV +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 YALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 173 FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKA 278
Q VRFSWSTA IL+++A
Sbjct: 233 QFVRFSWSTAQAILEKEA 250
>gi|410950548|ref|XP_003981966.1| PREDICTED: ribonuclease H2 subunit A [Felis catus]
Length = 299
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 194/310 (62%), Gaps = 29/310 (9%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
D++ ++S +P C+ +PC+LG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDSTGRCRLNSPVPAVCRKEPCILGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFVKMQEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVG P++Y+++L + FP + +TV +KA D+
Sbjct: 127 QFALDQGVKVAQVFVDTVGLPDTYQERLQQRFPGIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L ++++PVFGF
Sbjct: 172 LYPVVSAASICAKVARDQAVKNWHFVEKLQGLDADYGSGYPNDPKTKAWLRKHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKA--VLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPV 317
PQ VRFSW TA IL+++A V+ E D+E G I ++F A P
Sbjct: 232 PQFVRFSWRTAQSILEKEAEGVMWEDSLTGDQEGPGR------ITSYFSEGARVRPRLP- 284
Query: 318 VEERHAFFKE 327
H +F+E
Sbjct: 285 ----HRYFQE 290
>gi|17536263|ref|NP_495796.1| Protein RNH-2 [Caenorhabditis elegans]
gi|11387113|sp|Q9U6P6.1|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI
large subunit; Short=RNase HI large subunit; AltName:
Full=Ribonuclease HI subunit A
gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans]
gi|15718212|emb|CAC70103.1| Protein RNH-2 [Caenorhabditis elegans]
Length = 297
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 193/292 (66%), Gaps = 28/292 (9%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLGIDEAGRGPVLGPMVY A P D N EL KNLG DSKAL E KR++I + + ++
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVEL-KNLGVDDSKALNEAKREEIFNKMNED 79
Query: 100 ---NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ + + +SP +I SML+RQKYSLNEVSH+AAI LIR +A VNV E+ VDT
Sbjct: 80 EDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDT 139
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
VGP +Y+ KL ++FP + I V KA DS +P+V AASI AKV+RD
Sbjct: 140 VGPKATYQAKLEKLFPGISICVTEKA---------------DSLFPIVSAASIAAKVTRD 184
Query: 217 SALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
S L++W F+E I++ + +GSGYPGDP TKKFL +++PVFGF LVR SW TAS I++
Sbjct: 185 SRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVE 244
Query: 276 EKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKE 327
++ V +D+EEEG+++ R + ++ PK E+ VV +R+ +FKE
Sbjct: 245 KRCV---PGSWEDDEEEGKSQSKR-MTSWMVPKN----ETEVVPKRNVYFKE 288
>gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818]
Length = 421
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 164/262 (62%), Gaps = 19/262 (7%)
Query: 22 NSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADS 81
N ++II IPE CK +PC+LG+DEAGRGPV GPMVYG A+ PK E+ LKN+G DS
Sbjct: 107 NRDSVIIECDIPEVCKQKPCILGVDEAGRGPVCGPMVYGVAFAPKPM-EKTLKNMGFTDS 165
Query: 82 KALTEKKRDDILDSICKE--NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
K + E++R+ + + + +GW V +SPN I ML RQKYSLNE+SHD IGLI
Sbjct: 166 KVVKEEERERLFTEMKSGSLHGKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLI 225
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
R+ + GVN+ VYVDTVGP Y+ KL IFP+L ITV + KADS
Sbjct: 226 RRCLDQGVNLEAVYVDTVGPDTVYQAKLQGIFPQLKITV---------------SKKADS 270
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
Y +V AASICAKV RD L +W E I N +G GYP DP TK +L NID VFGF
Sbjct: 271 KYVIVSAASICAKVVRDHVLSAWRHPERIGA-NTEYGCGYPSDPKTKAWLRANIDKVFGF 329
Query: 260 PQLVRFSWSTASKILKEKAVLV 281
P +VRFSW TA +L + A V
Sbjct: 330 PSVVRFSWQTAQTLLDKHAAAV 351
>gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864]
Length = 385
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 191/312 (61%), Gaps = 31/312 (9%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
+NSR ++S +P+ C++ PC LGIDEAGRGPVLGPMVYG +YCP ++ L + +G D
Sbjct: 90 NNSRTATLASPVPDVCRTAPCCLGIDEAGRGPVLGPMVYGISYCPLSDDPRL-RQMGFDD 148
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L E R + D I K N ++G+ V +ISP I +SMLRR KY+LN +SHD A+ L++
Sbjct: 149 SKKLDEPTRRRLFDDINKANDFMGFSVCVISPQDISSSMLRRAKYNLNALSHDTAMSLVQ 208
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ + GVN+ +V+VDTVG E+Y++KLSE FP + V++K ADS
Sbjct: 209 RALDDGVNIAKVFVDTVGTAETYQEKLSERFPGIEFKVSAK---------------ADSL 253
Query: 201 YPVVGAASICAKVSRDSALKSWTFQE--GIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
+P+V AASICAKV RD L W F E G I + +G GYP DPVTK++L N+D VFG
Sbjct: 254 FPIVSAASICAKVVRDHVLDIWQFSEPHGSTIGRD-FGCGYPSDPVTKQWLQTNMDSVFG 312
Query: 259 FPQLVRFSWSTASKILKEKAVLVE---GDEIDDEEEEGENKKTRSIRNFFKPKADENVES 315
FP +VRFSW T IL ++AV V E +D+E K SI F KP A
Sbjct: 313 FPGVVRFSWGTCKNILIDRAVNVTWEDDGEDEDDERANAKKSNHSILEFVKPTA------ 366
Query: 316 PVVEERHAFFKE 327
+RH +F E
Sbjct: 367 ---PKRHRYFIE 375
>gi|395513066|ref|XP_003760751.1| PREDICTED: ribonuclease H2 subunit A [Sarcophilus harrisii]
Length = 307
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 190/314 (60%), Gaps = 29/314 (9%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ + +SS +PE C+++ C LGIDE GR V GPMVYG +CP +L + L A
Sbjct: 8 RDNTGSCRLSSPVPEVCRAEDCCLGIDEIGRAHVSGPMVYGICFCPLSRLGDL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +R+ + + + ++GW ++I+SPN+I SM RR KY+LN +SHD A+ L+
Sbjct: 67 DSKTLSEAERERLFGKLEQARDFVGWALDILSPNLISTSMQRRAKYNLNSLSHDTAMALV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVGP + Y++KL E FPE+ +TV KA DS
Sbjct: 127 QLALDQGVRVTQVFVDTVGPADKYQQKLKERFPEVEVTVRPKA---------------DS 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+PVV AASICAKV+RD A+K W F E ++ +GSGYP DP TK++LS+ +DPVFGF
Sbjct: 172 LFPVVSAASICAKVARDHAVKRWKFLEDLKDLKMDYGSGYPNDPKTKEWLSQCLDPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEE------EEGENKKTRSIRNFFKPKADENV 313
PQ VRFSWSTA IL +AV V + D EE G T S+ ++F
Sbjct: 232 PQFVRFSWSTAQLILDGRAVPVRWE--DSEEGAGGSPAAGRGSGTPSLLSYFA-----RT 284
Query: 314 ESPVVEERHAFFKE 327
++ + H FF E
Sbjct: 285 QAATERQSHRFFHE 298
>gi|395850804|ref|XP_003797965.1| PREDICTED: ribonuclease H2 subunit A [Otolemur garnettii]
Length = 300
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/276 (46%), Positives = 182/276 (65%), Gaps = 18/276 (6%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
NDN+ ++S +P C + CVLG+DEAGRGPVLGPMVY YCP + +L + L A
Sbjct: 8 NDNTGRCRLNSPVPLVCLKEACVLGVDEAGRGPVLGPMVYAICYCPLSHLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A LI
Sbjct: 67 DSKTLSESERNRLFAKMEEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATALI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GV V +V+VDTVG PE+Y+K+L + FP + +TV +K ADS
Sbjct: 127 QYALDQGVKVSQVFVDTVGMPETYQKRLQQCFPGIKVTVKAK---------------ADS 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
Y VV AASICAKV+RD A+++W F E +Q + +GSGYP DP TK +L ++++PVFGF
Sbjct: 172 LYSVVSAASICAKVARDQAVRNWRFVERLQDFDADYGSGYPNDPKTKAWLKKHVEPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKA--VLVEGDEIDDEEEEG 293
PQ VRFSW TA IL+++A V+ E + D+E G
Sbjct: 232 PQFVRFSWRTAMAILEKEAEDVVWEDLTVGDQESAG 267
>gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
Length = 301
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 193/307 (62%), Gaps = 23/307 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGP VY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPXVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + ++ ++GW ++++SPN+I S L R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKXEEDGDFVGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ VNV +V+VDTVG PE+Y+ +L + FP + +TV +KADS +PVV
Sbjct: 128 YALDQNVNVTQVFVDTVGXPETYQARLQQHFPGIEVTVKAKADSLFPVVS---------- 177
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 178 -----AASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSWSTA IL+++A E +D E E + ++ I ++F + ++ +
Sbjct: 233 QFVRFSWSTAQAILEKEA---EDVIWEDSEAEEDPERPGKITSYFS----QGPQTCRPQA 285
Query: 321 RHAFFKE 327
H +F+E
Sbjct: 286 PHRYFQE 292
>gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae]
Length = 297
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 184/292 (63%), Gaps = 28/292 (9%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLGIDEAGRGPVLGPMVY A P D N EL K LG DSKAL E KR++I + I +
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPMDQNAEL-KALGVDDSKALNEAKREEIFEKINND 79
Query: 100 ---NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ + + +SP +I +SML+R KYSLNEVSHDAAI LIR A VNV E+ VDT
Sbjct: 80 EEIQQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVDT 139
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
VGP +Y+ KL +FP + I V K ADS +P+V AASI AKV+RD
Sbjct: 140 VGPKATYQAKLERLFPGISICVTEK---------------ADSLFPIVSAASIAAKVTRD 184
Query: 217 SALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ L++W F +E I++ N +GSGYPGDP TKKFL ++ P+FGF LVR SW TAS I++
Sbjct: 185 TRLRNWEFKEENIKVPENGFGSGYPGDPNTKKFLQLSVHPIFGFCSLVRASWKTASAIVE 244
Query: 276 EKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKE 327
++ V G DDEEE K S+ + +PK E E V +R+ +FKE
Sbjct: 245 KRC--VPGYWEDDEEEGKPQNKKMSV--WLQPK--EGTE--VAPKRNVYFKE 288
>gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium
dendrobatidis JAM81]
Length = 290
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 129/255 (50%), Positives = 175/255 (68%), Gaps = 17/255 (6%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+SS +P S + PC+LG+DEAGRGPVLGPMVY Y ++++ LK++G ADSK L E
Sbjct: 50 VSSQLPISDRP-PCILGVDEAGRGPVLGPMVYAVCYT-LISHQDKLKDIGFADSKVLNET 107
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
+RD + +I K++ W+GW + SP I SMLRR KY+LN ++HD I LI+ V+ GV
Sbjct: 108 QRDKLFATIEKQSEWIGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGV 167
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
N++EVYVDTVG PESY+ KL++ FP++ V SK KADS +P+V AA
Sbjct: 168 NIQEVYVDTVGSPESYQAKLAKRFPKIGKIVVSK--------------KADSLFPIVSAA 213
Query: 208 SICAKVSRDSALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
SICAKV+RD+ L +W F E GI A+GSGYP DP T +L +++DPVFGFP++VRFS
Sbjct: 214 SICAKVTRDAILCNWEFVEPGIDSTQRAFGSGYPADPKTVAWLKKHLDPVFGFPRIVRFS 273
Query: 267 WSTASKILKEKAVLV 281
WST +K+L+ + V V
Sbjct: 274 WSTTAKLLEMQGVDV 288
>gi|341896396|gb|EGT52331.1| hypothetical protein CAEBREN_16035 [Caenorhabditis brenneri]
gi|341900120|gb|EGT56055.1| CBN-RNH-2 protein [Caenorhabditis brenneri]
Length = 297
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 188/293 (64%), Gaps = 30/293 (10%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLGIDEAGRGPVLGPMVY A P D N+EL K LG DSKAL E KR++I + + +
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNDEL-KALGVDDSKALNEAKREEIFEKMNND 79
Query: 100 ---NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ + + +SP +I +SML+RQKYSLNEVSHDAAI LIR + VNV E+ VDT
Sbjct: 80 EEIQQLVAYALRALSPELISSSMLKRQKYSLNEVSHDAAIALIRDALNCNVNVVEIKVDT 139
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
VGP +Y+ KL ++FP + I V K ADS +P+V AASI AKV+RD
Sbjct: 140 VGPKATYQAKLEKLFPGISICVTEK---------------ADSLFPIVSAASIAAKVTRD 184
Query: 217 SALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
LK W F+E +++ + +GSGYPGDP TKKFL +++PVFGF LVR SW TAS I++
Sbjct: 185 HRLKHWEFKEKNVKVPDAGFGSGYPGDPNTKKFLQLSVNPVFGFCSLVRSSWKTASTIVE 244
Query: 276 EKAVLVEGDEIDDEEE-EGENKKTRSIRNFFKPKADENVESPVVEERHAFFKE 327
++ V G DDEEE + +NKK + + +PK E V +R+ +FKE
Sbjct: 245 KRC--VPGYWEDDEEEGKPQNKK---MSGWLQPKNAEE----KVPKRNVYFKE 288
>gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 307
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/300 (44%), Positives = 182/300 (60%), Gaps = 27/300 (9%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
+++ + S K +PC+LGIDEAGRGPVLGPMVYG AYCP D E + L ADSKALTE
Sbjct: 1 MVTGSASPSWKEKPCLLGIDEAGRGPVLGPMVYGCAYCPIDQKERI-STLKFADSKALTE 59
Query: 87 KKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG 146
KR+++ +++ K + +GW V++I P + MLRR K +LN +S ++A+GLIR + G
Sbjct: 60 SKREELYENL-KADDLMGWAVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLG 118
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
V + EV+VDTVG P Y+ L+ FP + TV+ KADS +P+V A
Sbjct: 119 VFLTEVFVDTVGDPGKYQDMLTTKFPGIRFTVSKKADSLFPIVS---------------A 163
Query: 207 ASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
ASI AKV+RD AL+ W E + +GSGYPGDP TK +L +++DPVFGFP LVRFS
Sbjct: 164 ASIVAKVTRDRALRDWVVDETGREVTRGFGSGYPGDPETKTWLEDHVDPVFGFPSLVRFS 223
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFK 326
W+T L + V V + DD+E+E E K KPK E RH++F+
Sbjct: 224 WATCKPYLTKGGVFVYWESADDDEDEVEKKH--------KPK--HVGEQSCARMRHSYFE 273
>gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A [Pongo
abelii]
Length = 313
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 190/322 (59%), Gaps = 43/322 (13%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGP-------------MVYGTAYCPK 66
DN+ +SS +P C+ +PCVLG+DEAGRGP++GP MVY YCP
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPL 67
Query: 67 DNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYS 126
+L + L ADSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+
Sbjct: 68 SRLADL-EALKVADSKTLLESERERLFAKM-EDRDFVGWALDVLSPNLISTSMLGRVKYN 125
Query: 127 LNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTY 186
LN +SHD A GLI+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KA
Sbjct: 126 LNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKA---- 181
Query: 187 PVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIEN-NAWGSGYPGDPVT 245
D+ YPVV AASICAKV+RD A+K W F E +Q +GSGYP DP T
Sbjct: 182 -----------DALYPVVSAASICAKVARDQAVKKWQFVEKLQDSXYTDYGSGYPQDPKT 230
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKA--VLVEGDEIDDEE----------EEG 293
K +L E+++PVFGFPQ VRFSW TA IL++ A V+ E +D+E EG
Sbjct: 231 KAWLKEHVEPVFGFPQFVRFSWRTAQTILEKGAEDVIWEDSAPEDQEGLRKITSYFLNEG 290
Query: 294 ENKKTRSIRNFFKPKADENVES 315
+ RS +F + E+ S
Sbjct: 291 SQARPRSSHRYFLERGLESATS 312
>gi|413916142|gb|AFW56074.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 297
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/263 (48%), Positives = 170/263 (64%), Gaps = 18/263 (6%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+++ +PE +PC++GIDEAGRGPVLGPMVYG YC N L L ADSK L E+
Sbjct: 1 MAALVPEWATKEPCLMGIDEAGRGPVLGPMVYGCVYCACSYNN-TLATLKFADSKTLKEE 59
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
+R+++ +S+ K N+ +GW V++I P + ML+R K +LNE+SH++A+GL+RKV+ GV
Sbjct: 60 QREELFESL-KANSSIGWEVDVICPKDLSAKMLKRSKVNLNEISHNSAMGLVRKVLDMGV 118
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ EVYVDTVG PE Y+ KL+E FP + VA KADS YP VV A
Sbjct: 119 LLAEVYVDTVGDPEKYRTKLTEKFPGVKFVVAKKADSLYP---------------VVSGA 163
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
SI AKV+RD AL++W F E + GSGYPGDP TK++L ++ PVFGFP LVRFSW
Sbjct: 164 SIAAKVTRDRALRNWVFDETALSLHMRTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSW 223
Query: 268 STASKILKEKA-VLVEGDEIDDE 289
T K+ V E DE+D+E
Sbjct: 224 GTCKPFFKDAVDVTWESDEVDEE 246
>gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
Length = 297
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 181/290 (62%), Gaps = 23/290 (7%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+++ +PE +PC++GIDEAGRGPVLGPMVYG YC + N L L ADSK L E+
Sbjct: 1 MAAPVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNN-TLSTLKFADSKTLKEE 59
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
+R+++ +S+ K N+ +GW V++I P + ML++ K +LNE+SH++A+GL+RKV+ G+
Sbjct: 60 QREELFESL-KVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGI 118
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ EVY+DTVG PE Y+ KL+E FP + VA KAD S YPVV A
Sbjct: 119 LLAEVYIDTVGDPEKYRIKLTEKFPGIKFVVAKKAD---------------SLYPVVSGA 163
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
SI AKV+RD AL++W F E + GSGYPGDP TK++L ++ PVFGFP LVRFSW
Sbjct: 164 SIVAKVTRDRALRNWVFDETALSLHMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSW 223
Query: 268 STASKILKEKA-VLVEGDEID-DEEEEGENKKTRSIRNF----FKPKADE 311
T K+ V E DE+D D + G K+ + + FK K +E
Sbjct: 224 GTCKPFFKDAVEVTWESDEVDEDGTDNGSTKRQVKLSSLGFTGFKRKTEE 273
>gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
Length = 297
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/276 (46%), Positives = 175/276 (63%), Gaps = 19/276 (6%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+++ +PE +PC++GIDEAGRGPVLGPMVYG YC + N L L ADSK L E+
Sbjct: 1 MAAPVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNN-TLATLKFADSKTLKEE 59
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
+R+++ +S+ K N+ +GW V++I P + MLR+ K +LNE+SH++A+GL+RK++ GV
Sbjct: 60 QREELFESL-KVNSSIGWEVDVICPKDLSAKMLRKSKVNLNEISHNSAMGLVRKLLDMGV 118
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ EVY+DTVG PE Y+ KL+E FP + VA KAD S YPVV A
Sbjct: 119 LLAEVYIDTVGDPEKYRIKLTEKFPGIKFVVAKKAD---------------SLYPVVSGA 163
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
SI AKV+RD AL++W F E + GSGYPGD TK++L ++ PVFGFP LVRFSW
Sbjct: 164 SIVAKVTRDRALRNWVFDETALNMHMKTGSGYPGDTDTKQWLQDHKHPVFGFPTLVRFSW 223
Query: 268 STASKILKEKA-VLVEGDEIDDEEEEGENKKTRSIR 302
T + K+ V E DE+ DE+ G R ++
Sbjct: 224 GTCTPFFKDAVEVTWESDEV-DEDGTGNGSTKRQVK 258
>gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 298
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 163/261 (62%), Gaps = 20/261 (7%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
SS +PCVLGIDEAGRGPVLGPMVY A P D E+L K LG DSKALTE+K
Sbjct: 17 SSGFANFASGKPCVLGIDEAGRGPVLGPMVYACAISPLDAAEQL-KELGVDDSKALTEEK 75
Query: 89 RDDILDSICKE---NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAA 145
R I +++ E + + ++S +I MLRR KYSLNE+SH +AI LI+ +
Sbjct: 76 RTQIFENMNNEENTTKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALEN 135
Query: 146 GVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVG 205
G+NV E+YVDTVGP +Y+ KL FP + ITV KAD S +PVVG
Sbjct: 136 GINVTEIYVDTVGPKSTYQAKLQAHFPNISITVTEKAD---------------SLFPVVG 180
Query: 206 AASICAKVSRDSALKSWTFQEG-IQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
AASI AKV+RD L+ W F EG + + +GSGYPGDP T+KFL +IDPVFG+ LVR
Sbjct: 181 AASIAAKVTRDGVLRDWVFVEGDVTVPEGGYGSGYPGDPNTRKFLVTSIDPVFGYSSLVR 240
Query: 265 FSWSTASKILKEKAVLVEGDE 285
FSW TA IL++ A + +E
Sbjct: 241 FSWKTAETILEKSAFPCKWEE 261
>gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis]
Length = 293
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 178/289 (61%), Gaps = 19/289 (6%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S+PC++GIDEAGRGPVLGPMVYG YC + +E L L ADSK L E+KR+++ +S+
Sbjct: 11 SEPCIMGIDEAGRGPVLGPMVYGCLYCSA-SYQETLATLKFADSKTLKEEKREELFESL- 68
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K +A LGW V+II P + ML+R K +LN +SHDAA+GL+ V++ G+ + EVYVDTV
Sbjct: 69 KADASLGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSKGILLSEVYVDTV 128
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G + Y+ KL E FP + V+ KADS YP+ V ASI AKV+RD+
Sbjct: 129 GDADKYRIKLEEKFPGIKFVVSKKADSLYPI---------------VSGASIVAKVTRDN 173
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA-SKILKE 276
AL+ W E + + +GSGYPGDP TK +L EN PVFGFP LVRFSW+T S K
Sbjct: 174 ALRGWVLDETAEGISRNFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATCNSYTAKG 233
Query: 277 KAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFF 325
V+ E DE D G+NKK ++ + E +ES + R FF
Sbjct: 234 VTVIWEPDEEDKASNGGDNKKQLTLNFPTVKRKSEELESS-GKGRFKFF 281
>gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
Length = 282
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 162/244 (66%), Gaps = 16/244 (6%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++I+SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ V V +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 HAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 173 FPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVR 264
Q VR
Sbjct: 233 QFVR 236
>gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA]
gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei]
Length = 288
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/257 (48%), Positives = 159/257 (61%), Gaps = 19/257 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRGPVLGPMVY YC K++ E+LLK + DSK +TE R+ + +
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKED-EKLLKEMKIDDSKKITEHDREKMFYKLNNSKLP 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
W V I+ P I ML+RQKY+LNE+SHD AI +I+ V+ G N+ EV+VDTVG
Sbjct: 78 FAWRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVFVDTVGKASV 137
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y++KL ++FP + + KADS YPVV AASICAKV+RD +K W
Sbjct: 138 YEEKLQKLFPN---------------IKCVVKEKADSLYPVVSAASICAKVTRDFLIKKW 182
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
++E I + +GSGYPGDPVTK FL N DP+FGFP +VRFSWSTA +L+ L E
Sbjct: 183 KYEEHIINIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLEN---LGE 239
Query: 283 GDEIDDEEEEGENKKTR 299
E DEEE +K +
Sbjct: 240 KIEWYDEEESNNSKAMK 256
>gi|357160839|ref|XP_003578893.1| PREDICTED: ribonuclease H2 subunit A-like [Brachypodium distachyon]
Length = 299
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 177/284 (62%), Gaps = 23/284 (8%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
E +PC++GIDEAGRGPVLGPMVYG +C + ++ L L ADSK L E++R+++
Sbjct: 9 EWATKEPCIMGIDEAGRGPVLGPMVYGCMFCARSYHD-TLATLSFADSKTLKEEQREELF 67
Query: 94 DSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+++ K N+ +GW V++I P + ML+R K +LNE+SH++A+GL++K ++ GV + +VY
Sbjct: 68 ETL-KTNSAIGWEVDVICPKELSAKMLKRTKVNLNEISHNSAMGLVKKALSMGVLLTDVY 126
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DTVG PE Y+ KL+E FP + VA KAD S YPVV ASI AKV
Sbjct: 127 IDTVGDPEKYRVKLTEKFPGITFVVAKKAD---------------SLYPVVSGASIVAKV 171
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+RD AL++W F E Q + GSGYPGDP T ++L ++ PVFGFP LVRFSW T +
Sbjct: 172 TRDRALRNWVFDETAQNMHMDTGSGYPGDPNTIQWLKDHKHPVFGFPTLVRFSWGTCTSY 231
Query: 274 LKEKA-VLVEGDEID-DEEEEGENKKTRSIRNF----FKPKADE 311
K V E DE+D D G K+ + + FK K++E
Sbjct: 232 FKTGVEVTWESDELDEDAASNGSAKRQVRLSSLGFTGFKRKSEE 275
>gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
Length = 288
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 128/254 (50%), Positives = 160/254 (62%), Gaps = 19/254 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRGPVLGPMVY YC K++ E+LLK + DSK +TE R+ + +
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCNKEH-EKLLKEMKIDDSKKITEADREKMFVKLNNSKLP 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
GW V I+ P I ML++QKY+LNE+SHD AI +I VI G N+ EV+VDTVG
Sbjct: 78 FGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKASV 137
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y++KL ++FP + TV KADS YPV V AASICAKV+RD LK W
Sbjct: 138 YEEKLQKMFPHIKCTVKEKADSLYPV---------------VSAASICAKVTRDFLLKKW 182
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
++E I +N +GSGYPGDPVTK FL N D VFGFP +VRFSWSTA +L+ L E
Sbjct: 183 KYEEPIINIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLEN---LGE 239
Query: 283 GDEIDDEEEEGENK 296
E D+EE ++K
Sbjct: 240 KIEWYDDEEGNDSK 253
>gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis]
Length = 299
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/271 (46%), Positives = 174/271 (64%), Gaps = 19/271 (7%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
ST+P+ S+PC++GIDEAGRGPVLGPMVYG YC + + E L L ADSK L E KR
Sbjct: 7 STLPK-WASKPCIMGIDEAGRGPVLGPMVYGCLYCAR-SYERTLSTLSFADSKTLKEDKR 64
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+++ +++ K N +GW V++I P + ML++ K +LNE+SH++AIGLI +V+ GV +
Sbjct: 65 EELFENL-KANESIGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEGVLL 123
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+VY+DTVG E Y+ KLSE FP + VA KADS YP VV ASI
Sbjct: 124 TQVYLDTVGDAEKYRIKLSERFPSIKFVVAKKADSLYP---------------VVSGASI 168
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
AKV+RD AL++W +E + + +GSGYPGDP TK +L ++ VFGFP LVRFSW T
Sbjct: 169 VAKVTRDRALRNWVLEETAEGISRNFGSGYPGDPETKAWLKQHKHQVFGFPTLVRFSWGT 228
Query: 270 ASKILKEKA-VLVEGDEIDDEEEEGENKKTR 299
+ K+ VL E D++D+++ N K +
Sbjct: 229 CNSYYKDAVEVLWESDKMDEDDSVNSNGKRQ 259
>gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group]
gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group]
Length = 298
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 175/269 (65%), Gaps = 18/269 (6%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
++++ PE +PC++GIDEAGRGPVLGPMVYG YC + + ++ L L ADSK L E
Sbjct: 1 MVAAVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCAR-SYQDTLATLKFADSKTLKE 59
Query: 87 KKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG 146
++R+++ +S+ K+N+ +GW V++I P + ML+R K +LNE+SH++A+GL+++ + G
Sbjct: 60 EQREELFESL-KDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMG 118
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
V + EVY+DTVG E Y+ KL+E FP + VA KADS +P VV
Sbjct: 119 VLLAEVYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFP---------------VVSG 163
Query: 207 ASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
ASI +KV+RD AL++W F E Q + GSGYPGDP TK++L ++ P+FGFP LVRFS
Sbjct: 164 ASIVSKVTRDRALRNWVFDETAQNMHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFS 223
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEGEN 295
W T + + A+ V + + EE+ G N
Sbjct: 224 WGTCTPFFND-AIEVTWESNELEEDAGSN 251
>gi|449468774|ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
Length = 297
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/263 (47%), Positives = 169/263 (64%), Gaps = 18/263 (6%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S+PCV+GIDEAGRGPVLGPMVYG YC ++L +L ADSK L E+KR+++ + +
Sbjct: 12 SKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQL-SSLNFADSKTLKEEKREELFEDL- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K N +GW V++I P + + ML + K +LNE+SHD+A+GL+ KV++ GV + EVYVDTV
Sbjct: 70 KANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVLLTEVYVDTV 129
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G PE Y+ KLSE FP + VA KAD S YPVV ASI AKV+RD
Sbjct: 130 GDPEKYRIKLSEKFPNIKFVVAKKAD---------------SLYPVVSGASIVAKVTRDR 174
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
AL+ W +E + + +GSGYPGDP TK +L ++ VFGFP LVRFSW T + K+
Sbjct: 175 ALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDV 234
Query: 278 A-VLVEGDEIDDEEEEGENKKTR 299
V E D++D++ G + K +
Sbjct: 235 VEVSWESDKVDEDGATGGSGKKQ 257
>gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii 17XNL]
gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii]
Length = 307
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 160/257 (62%), Gaps = 19/257 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRGPVLGPMVY YC K++ E+LLK + DSK +TE R+ + +
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKED-EKLLKEMKIDDSKKITEHDREKMFYKLNNSKLP 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
W V I+ P I ML+++KY+LNE+SHD AI +I+ V++ G N+ EV+VDTVG
Sbjct: 78 FAWRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQHVLSRGCNLTEVFVDTVGKASV 137
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y++KL ++FP + + KADS YPVV AASICAKV+RD +K W
Sbjct: 138 YEEKLQKLFPN---------------IKCVVKEKADSLYPVVSAASICAKVTRDFLIKKW 182
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
++E I + +GSGYPGDPVTK FL N DP+FGFP +VRFSWSTA +L+ L E
Sbjct: 183 KYEEQIINIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLEN---LGE 239
Query: 283 GDEIDDEEEEGENKKTR 299
E DEEE +K +
Sbjct: 240 KIEWYDEEESNNSKAMK 256
>gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax Sal-1]
gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax]
Length = 288
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 163/257 (63%), Gaps = 17/257 (6%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRGPVLGPMVY YC K++ E+LLK + DSK ++E R+ + + +
Sbjct: 19 LGIDEAGRGPVLGPMVYAGFYCNKEH-EKLLKEMKIDDSKKISEADREMMFHKLNNSSLP 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
GW + ++ P I ML++QKY+LNE+SHD AI +I VI+ G N+ EV+VDTVG P
Sbjct: 78 FGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVISRGCNLTEVFVDTVGKPSV 137
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y++KL +FP + TV KAD S YPVV AASICAKV+RD +K W
Sbjct: 138 YEEKLKRLFPHIKCTVKEKAD---------------SLYPVVSAASICAKVTRDFLIKKW 182
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
++E + + +GSGYPGDP+TK FL N D VFGFP +VRFSWSTA +L+ +E
Sbjct: 183 KYEEPLVNIDKGFGSGYPGDPITKNFLKNNFDTVFGFPSIVRFSWSTADNMLETMGEQIE 242
Query: 283 G-DEIDDEEEEGENKKT 298
D+I++ + + +KT
Sbjct: 243 WYDDIENNDSKAIKRKT 259
>gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group]
Length = 298
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 174/269 (64%), Gaps = 18/269 (6%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
+ ++ PE +PC++GIDEAGRGPVLGPMVYG YC + + ++ L L ADSK L E
Sbjct: 1 MAAAVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCAR-SYQDTLATLKFADSKTLKE 59
Query: 87 KKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG 146
++R+++ +S+ K+N+ +GW V++I P + ML+R K +LNE+SH++A+GL+++ + G
Sbjct: 60 EQREELFESL-KDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMG 118
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
V + EVY+DTVG E Y+ KL+E FP + VA KADS +P VV
Sbjct: 119 VLLAEVYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFP---------------VVSG 163
Query: 207 ASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
ASI +KV+RD AL++W F E Q + GSGYPGDP TK++L ++ P+FGFP LVRFS
Sbjct: 164 ASIVSKVTRDRALRNWVFDETAQNMHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFS 223
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEGEN 295
W T + + A+ V + + EE+ G N
Sbjct: 224 WGTCTPFFND-AIEVTWESNELEEDAGSN 251
>gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum]
Length = 289
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/295 (45%), Positives = 177/295 (60%), Gaps = 29/295 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRGPVLGPMVY A P + EL +G ADSK L+E +R+ +L + +
Sbjct: 1 MLGIDEAGRGPVLGPMVYACALSPINRLNEL-TTIGLADSKTLSEIQREKLLQDMLNKCD 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W+ +V +ISP I ML R K SLN +SHD+AI LI+ V+ +G+N+ EVYVDTVG E
Sbjct: 60 WMSAVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAE 119
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ KL +FP+L I V SKAD TYP+V AASI AKV+RD L+
Sbjct: 120 HYEAKLQNLFPQLKIRVESKAD---------------DTYPIVSAASIFAKVTRDRILQM 164
Query: 222 WTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
W +E G + GSGYPGDPVTK +L +DPVFGFP LVR SWSTAS +L++ V
Sbjct: 165 WPKEERGNVPDGTGLGSGYPGDPVTKSYLRACLDPVFGFPSLVRSSWSTASTLLEQHGVS 224
Query: 281 VEGDEIDDEEEEGENKK----------TRSIRNFFKPKADENVESPVVEERHAFF 325
V+ ++ + EE E KK T + NFF ++ + + + +R FF
Sbjct: 225 VKWEDDETHEEVVEAKKLAKKREYSKGTCKLSNFFNAQSKLSTSNAL--QRQPFF 277
>gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H]
gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain
H]
Length = 288
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 174/283 (61%), Gaps = 24/283 (8%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRGPVLGPMVY YC K++ E+LLK + DSK ++E R+ + +
Sbjct: 19 LGIDEAGRGPVLGPMVYAGFYCNKEH-EKLLKEMKIDDSKKISEADREMMFHKLNNSKLP 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
GW + ++ P I ML++QKY+LNE+SHD AI +I VI+ G N+ EV+VDTVG
Sbjct: 78 FGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTEVFVDTVGKANV 137
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y++KL+++FP + TV KAD S YPVV AASICAKV+RD +K W
Sbjct: 138 YEEKLTKLFPHIKCTVREKAD---------------SLYPVVSAASICAKVTRDFLIKKW 182
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
++E + + +GSGYPGDP+TK FL N D VFGFP +VRFSWSTA +L+
Sbjct: 183 KYEEPLVNIDKGFGSGYPGDPITKNFLKNNFDSVFGFPSIVRFSWSTADNMLE-----TM 237
Query: 283 GDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFF 325
GD+I + ++ EN +R+I+ P ++ P V +R F+
Sbjct: 238 GDQI-EWYDDIENNDSRAIKRKM-PFDYSKLQKPFV-QRSVFY 277
>gi|225464178|ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 166/263 (63%), Gaps = 18/263 (6%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S+PC++GIDEAGRGPVLGPMVYG YC + + L L ADSK L E+KR+++ +++
Sbjct: 12 SEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHN-TLSTLNFADSKTLKEEKREELFENL- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K + +GW V++I P + ML++ K +LNE+SHD+AIGLI +V+ GV + EVYVDTV
Sbjct: 70 KADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTV 129
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G E Y+ KLSE FP V +A KADS YPVV ASI AKV+RD
Sbjct: 130 GDAEKYRIKLSERFP---------------AVKFVVAKKADSLYPVVSGASIVAKVTRDR 174
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
AL+ W E + + +GSGYPGDPVTK +L + VFGFP LVRFSW T + K+
Sbjct: 175 ALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDI 234
Query: 278 A-VLVEGDEIDDEEEEGENKKTR 299
VL E D+++++ N K +
Sbjct: 235 VEVLWEADKVEEDGSTNRNGKRQ 257
>gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1]
Length = 596
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 173/280 (61%), Gaps = 29/280 (10%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
I S IPE CK +PCVLG+DEAGRGPVLGPMVY A+ P N + K LG ADSK L+E
Sbjct: 287 IESDIPERCKIEPCVLGVDEAGRGPVLGPMVYAVAFAPLSENARM-KKLGFADSKQLSEA 345
Query: 88 KRDDILDSICKENA-WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG 146
KRD++ + KENA W+GW V +++ + I ML R K++LN +H++ + L++++ A G
Sbjct: 346 KRDELF-KVIKENADWMGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQG 404
Query: 147 V------------NVREVYVDTVGPPESYKKKLSE----IFPELIITVASKADSTYPVVG 190
V N R++YVDTVG Y+++L P + I V SK T+ V
Sbjct: 405 VQIKEDLTYRLRLNHRQLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSD 464
Query: 191 AAIA----SKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTK 246
+ + AD TYP+V AASICAKV+RD+ L W E +I+N+ +G GYPGD TK
Sbjct: 465 LCVLILDIANADVTYPIVSAASICAKVTRDAVLTYWRHPEQREIDND-FGCGYPGDSSTK 523
Query: 247 KFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEI 286
+L + +DP+FGFP LVRFSWSTA +L L EG +I
Sbjct: 524 AWLRKVLDPIFGFPSLVRFSWSTARDLL-----LKEGTKI 558
>gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66]
gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris
RN66]
Length = 286
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 162/264 (61%), Gaps = 24/264 (9%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK 98
+P +LGIDEAGRGPVLGPMV+ Y P +N E+LLK + DSK LTE R+ I I
Sbjct: 18 RPVILGIDEAGRGPVLGPMVFACFYYPTEN-EKLLKLMNIDDSKKLTENSREKINKDIRN 76
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
GW + I+ P + ML++QKY+LNE+SH AAI LI+ V+ GVNV +Y+DTVG
Sbjct: 77 NKNQFGWGIYILLPQYLSCQMLKKQKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVG 136
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
PPESYKKKL +FP + ITV K ADS YP V ASI AKV RD
Sbjct: 137 PPESYKKKLKLLFPSINITVTPK---------------ADSLYPCVSGASILAKVERDHF 181
Query: 219 LKS-WTFQEGIQIENNA-------WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
L + W+F + ++N GSGYPGDP TK+FL + VFGFP +VRFSWSTA
Sbjct: 182 LSNWWSFPGHDRYDHNGNNLSIYEQGSGYPGDPKTKQFLKQIFHKVFGFPNIVRFSWSTA 241
Query: 271 SKILKEKAVLVEGDEIDDEEEEGE 294
+I++++ V V+ +D E+ +
Sbjct: 242 DQIIEKEGVRVKWTLDEDNSEQSK 265
>gi|18400719|ref|NP_565584.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|49066054|sp|Q9SEZ6.2|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 296
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
SQPC++GIDEAGRGPVLGPMVYG YCP + + L +L ADSK L E+KR+++ +S+
Sbjct: 12 SQPCLMGIDEAGRGPVLGPMVYGCMYCPI-SYQSSLASLHFADSKTLKEEKREELYESL- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K + LGW V++I P + ML + K +LNE+SH++A+GLI++V+ GV + E Y+DTV
Sbjct: 70 KLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTV 129
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G P+ Y+ KLSE FP + V+ KADS +P+V ASI AKV+RD
Sbjct: 130 GDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSG---------------ASIVAKVTRDR 174
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK-E 276
ALK W +E + N +GSGYPGDP TK +L ++ VFGFP LVRFSW T + LK E
Sbjct: 175 ALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGE 234
Query: 277 KAVLVEGDEIDDEEEEGENKKTRSIRNF-FKP--KADENVES 315
V E DE ++ +K+ + +F FK K E +ES
Sbjct: 235 VEVAWEADENEESGNGSSSKRQAKLSSFGFKTCEKRSEEIES 276
>gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 296
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
SQPC++GIDEAGRGPVLGPMVYG YCP + + L +L ADSK L E+KR+++ +++
Sbjct: 12 SQPCLMGIDEAGRGPVLGPMVYGCMYCPI-SYQSSLASLHFADSKTLKEEKREELYENL- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K + LGW V++I P + ML + K +LNE+SH++A+GLI++V+ GV + E Y+DTV
Sbjct: 70 KLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTV 129
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G PE Y+ KLSE FP + V+ KADS +P+V ASI AKV+RD
Sbjct: 130 GDPEKYRIKLSERFPSIKFVVSKKADSLFPIVSG---------------ASIVAKVTRDR 174
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK-E 276
AL+ W +E + N +GSGYPGDP TK +L ++ VFGFP LVRFSW T + LK E
Sbjct: 175 ALREWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGE 234
Query: 277 KAVLVEGDEIDDEEEEGENKKTRSIRNF-FKP--KADENVES 315
V E DE ++ +K+ + +F FK K E +ES
Sbjct: 235 VEVAWEADETEESGNGSSSKRQAKLSSFGFKTCDKRSEEIES 276
>gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa]
gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 164/262 (62%), Gaps = 18/262 (6%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
S +I S+PC++GIDEAGRGPVLGPMVYG YC + + E+ L L ADSK L E+K
Sbjct: 3 SESILPDWASKPCIMGIDEAGRGPVLGPMVYGCLYCAR-SYEKTLSTLKFADSKTLKEEK 61
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
R+++ + + K N +GW V++I P + ML++ K +LNE+SHD+A GL+ +V+ GV
Sbjct: 62 REELFEKL-KANELIGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVL 120
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +VYVDTVG PE Y+ KLSE FP + VA KAD S YPVV AS
Sbjct: 121 LTDVYVDTVGDPEKYRIKLSERFPSIKFVVAKKAD---------------SLYPVVSGAS 165
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
I AKV+RD AL+ W E + +GSGYPGDP TK +L ++ VFGFP LVRFSW
Sbjct: 166 IVAKVTRDRALRDWVLDETAENMTRNFGSGYPGDPETKSWLEKHQHSVFGFPSLVRFSWG 225
Query: 269 TASKILKEKA-VLVEGDEIDDE 289
T + K V+ E D+ +++
Sbjct: 226 TCTSYSKNMVEVVWESDKTEED 247
>gi|443898899|dbj|GAC76232.1| ribonuclease HI [Pseudozyma antarctica T-34]
Length = 493
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 169/293 (57%), Gaps = 45/293 (15%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PC LG+DEAGRGPVLGP+VYG AYCP ++ LK +G ADSKALT +RD +L ++
Sbjct: 84 PCALGVDEAGRGPVLGPLVYGIAYCPV-AYQDSLKQIGFADSKALTADRRDQLLSALIDH 142
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ LGW V ++SP I MLRR+ +LN S A + LI V+ GV+V E+YVDTVG
Sbjct: 143 DNHLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLEQGVDVTEIYVDTVGD 202
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P+SY + LS FP +P + + SKAD+ YP+VGAASI AKV+RD +
Sbjct: 203 PKSYARLLSSHFPR------------HPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCI 250
Query: 220 KSWTFQEGI-------------------------QIENNAW------GSGYPGDPVTKKF 248
++W + E +I+++ W GSGYPGDP T +
Sbjct: 251 ENWKYAEQPAPAPHTVLGDSTNRPAASVGEPTKRRIDSDVWDRMGALGSGYPGDPNTVAY 310
Query: 249 LSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSI 301
L +DPVFG+P +VRFSW+TA +L+EK + +D E G + TRS+
Sbjct: 311 LKRTLDPVFGWPGIVRFSWATAKTMLEEK-IKPATASLDTEPVLGGKRLTRSL 362
>gi|356536350|ref|XP_003536702.1| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Glycine max]
Length = 297
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/294 (43%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+ S I S+PCV+GIDEAGRGPVLGPMVYG YC + + + L L ADSK L E+
Sbjct: 1 MGSKILPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQ-SYLKTLSTLSFADSKTLKEE 59
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
KR+++ +++ K N +GW V++I P + ML++ K +LNE+SH +A+GLI +V+ GV
Sbjct: 60 KREELFETL-KLNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGV 118
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ EVY+DTVG Y+ KLS FP + VA KADS Y PVV A
Sbjct: 119 LLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLY---------------PVVSGA 163
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
SI AKV+RD AL+ W E + +GSGYPGDP TK +L ++ +FGFP LVRFSW
Sbjct: 164 SIVAKVTRDRALREWVLDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSW 223
Query: 268 STASKILKEKA-VLVEGDEIDDEEEEGENKKTR-----SIRNFFKPKADENVES 315
T + K+ A VL E D +D++ NK + S F K E +ES
Sbjct: 224 GTCNSYFKDAAEVLWESDNLDEDGGGSNNKNGKRQLKLSNVGFTTSKRSEEIES 277
>gi|388580955|gb|EIM21266.1| ribonuclease HII [Wallemia sebi CBS 633.66]
Length = 327
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 157/271 (57%), Gaps = 38/271 (14%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S +PE+ + ++G+DEAGRGPVLGP+VYG AYC D E+ LK++G ADSKALT + R
Sbjct: 38 SDVPETLLNNKVMMGVDEAGRGPVLGPLVYGIAYCNLDY-EDTLKDVGFADSKALTAESR 96
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+LD + + L W V ++SP I ML++ Y+LN SHDA LI VIA GV +
Sbjct: 97 QTLLDKLISLSDQLAWSVRVMSPQDISAGMLKKVPYNLNAQSHDATFSLINDVIAKGVQL 156
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
VYVDTVGP +SY+ KL FP + TVASK ADS +P+V AASI
Sbjct: 157 EHVYVDTVGPAKSYQAKLEAAFPSIGFTVASK---------------ADSLFPIVSAASI 201
Query: 210 CAKVSRDSALKSWTFQEGI----------------------QIENNAWGSGYPGDPVTKK 247
AKV+RD+ + +W+F E I Q E GSGYPGDP T
Sbjct: 202 AAKVTRDAIIDNWSFLEPISNAISSSKKLKNEDSSVDVSEQQPEKMKLGSGYPGDPNTVA 261
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
+L N+D VFG PQL RFSWST +L+ A
Sbjct: 262 WLKNNLDDVFGLPQLARFSWSTVKNLLESNA 292
>gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A [Callithrix jacchus]
Length = 278
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/284 (43%), Positives = 172/284 (60%), Gaps = 38/284 (13%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C +PCV+G+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCGKEPCVVGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +R+ +L + ++ ++GW ++++SPN+I SML R L
Sbjct: 67 DSKTLSESERERLLGKMQEDGNFVGWALDVLSPNLISTSMLGR-------------FSLS 113
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
RKV V+VDTVG PE+Y+K+L + FP + +TV +KAD+ YPV
Sbjct: 114 RKV---------VFVDTVGMPETYQKRLQQSFPGIEVTVKAKADALYPV----------- 153
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 154 ----VSAASICAKVARDQAVKNWQFVEKLQDLDTDYGSGYPNDPKTKVWLKEHVEPVFGF 209
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E++EG K T N
Sbjct: 210 PQFVRFSWRTAQTILEKEAKDVIWEDSAPEDQEGLGKITSYFFN 253
>gi|358053836|dbj|GAA99968.1| hypothetical protein E5Q_06671 [Mixia osmundae IAM 14324]
Length = 367
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 157/264 (59%), Gaps = 37/264 (14%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK- 98
P +LGIDEAGRGPVLGPMVYG AYCP E L+ LG ADSK LT +R ++L +CK
Sbjct: 85 PYMLGIDEAGRGPVLGPMVYGAAYCPI-AYEGQLERLGFADSKTLTAARRSELLRVLCKP 143
Query: 99 --------------ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA 144
+ L W V ++SP I MLR+ Y+LN SHDA I LIR VI
Sbjct: 144 ARGAHMSGAALSDPSSDNLEWAVRVMSPFDISRGMLRKTPYNLNAQSHDATIMLIRDVIQ 203
Query: 145 AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVV 204
G N+ E Y+DTVG Y+ LS +FP + TV SKADS YP+V
Sbjct: 204 MGYNIAEAYIDTVGIASQYQDFLSGVFPTIKFTVTSKADSI---------------YPIV 248
Query: 205 GAASICAKVSRDSALKSWTFQEGI------QIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
GAASI AKV+RDS L+ WT++ + + +++ +GSGYPGDP T +L N+DPVFG
Sbjct: 249 GAASIAAKVTRDSVLEGWTYRNALPAMLVAESDDSDFGSGYPGDPRTVAWLERNMDPVFG 308
Query: 259 FPQLVRFSWSTASKILKEKAVLVE 282
FP + RFSW+T +L++KA V
Sbjct: 309 FPAVARFSWATVKNMLEKKAAHVR 332
>gi|428176594|gb|EKX45478.1| ribonuclease H2 large subunit [Guillardia theta CCMP2712]
Length = 241
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/269 (46%), Positives = 170/269 (63%), Gaps = 36/269 (13%)
Query: 43 LGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+GIDEAGRGPV+GPMVYG C K NNE LK +G ADSK LTE+KR+ + + I KE+
Sbjct: 1 MGIDEAGRGPVIGPMVYGACIICSKRNNE--LKEMGFADSKTLTEEKREVLFERI-KESN 57
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
LGW+VE++S + SML+R Y+LN +SHD AIG+IRKV+AA N+++V+VDTVG PE
Sbjct: 58 VLGWLVEVLSAKQLSGSMLQRAPYNLNAISHDTAIGMIRKVLAANFNLKKVFVDTVGDPE 117
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ KLS +FP + V KA DS +PVV AASICAKV+RD ++
Sbjct: 118 RYESKLSSLFPSIEFAVRKKA---------------DSLFPVVSAASICAKVTRDRCVRD 162
Query: 222 WTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
W F+E G+ + +GSGYP +P VFG+P LVRFSWST KI++ +
Sbjct: 163 WQFKETGVSFSTD-YGSGYPSEP-----------QVFGYPDLVRFSWSTTKKIIETQGES 210
Query: 281 VEGDEIDDEEEEGENKKTRSIRNFFKPKA 309
E + + EE++ ++K I FF +A
Sbjct: 211 FEWEADEMEEDQSQSK----INGFFTTQA 235
>gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
Length = 308
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 20/243 (8%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P +LG+DEAGRGPVLGP+VYG AYCP +E L+ LG ADSK LT R ++ ++C +
Sbjct: 40 PYILGVDEAGRGPVLGPLVYGVAYCPV-AYKETLEELGFADSKTLTADTRSSLISTLCSD 98
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ LGW V +I+P I + ML++ +LN+ S DA IGLIR+VI G+NV EVYVD +G
Sbjct: 99 PSNLGWSVRVIAPQAISSGMLKKPPTNLNKQSQDATIGLIRQVIDKGINVTEVYVDALGN 158
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+Y+ LS +FP + TVA +KADS + +VGAAS+ AKV+RD +
Sbjct: 159 TSTYEAYLSSLFPGIDFTVA---------------NKADSKFKIVGAASVAAKVTRDVCI 203
Query: 220 KSWTFQEGIQIENNAW----GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ W F+E + W GSGYP DP T+ +L +DPVFGFP++VRFSWST +L
Sbjct: 204 EEWVFEEDGGNAKSKWSKALGSGYPSDPNTQAWLKNAVDPVFGFPKIVRFSWSTVKVVLD 263
Query: 276 EKA 278
++A
Sbjct: 264 KQA 266
>gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata]
gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata]
Length = 277
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 123/255 (48%), Positives = 164/255 (64%), Gaps = 22/255 (8%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPK-DNNEELLKN-LGCADSKALTEKKRDDILD 94
KS +LGIDEAGRGPVLGPMVYG +C K DN +LKN + DSK L+E R++
Sbjct: 20 KSDYVILGIDEAGRGPVLGPMVYGGFFCTKGDNCNSILKNKIKVDDSKKLSESMRENKFY 79
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+ + G + E+I+P I ML+R+KY+LNE+SHD AI +IR V++ G N++EVY+
Sbjct: 80 QLNDPDHPFGVVAEVITPQYISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEVYI 139
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
D VG Y+ KLS++FP++ +V KA DS YP V AASI AKV
Sbjct: 140 DAVGTVNKYESKLSKMFPKIQFSVREKA---------------DSIYPTVSAASIVAKVI 184
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
RD+ +K+W F ++EN GSGYPGDP TK FL++N+D +FGFP +VRFSWSTAS +L
Sbjct: 185 RDNIIKTWKFD--FEVEN--IGSGYPGDPYTKDFLTKNMDKIFGFPDIVRFSWSTASNLL 240
Query: 275 KEKAVLVEGDEIDDE 289
+ VE D D+E
Sbjct: 241 -NGSESVEVDWYDEE 254
>gi|393910380|gb|EFO27394.2| ribonuclease HI large subunit [Loa loa]
Length = 305
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 134/300 (44%), Positives = 172/300 (57%), Gaps = 35/300 (11%)
Query: 11 TEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNE 70
T VE+ + S++N ++ S PCV+GIDEAGRGPVLGPMVY A NNE
Sbjct: 9 TAVEAVMESSNNFKDF---------GSSMPCVVGIDEAGRGPVLGPMVYACAVTLV-NNE 58
Query: 71 ELLKNLGCADSKALTEKKRDDILDSICKENA--WLGWMVEIISPNVICNSMLRRQKYSLN 128
+L +G DSK LTE KR+ I + + +N G+ IS +I +ML R K SLN
Sbjct: 59 NILLEMGVDDSKVLTEAKREKIFERMEGDNMSELFGYAHCSISAQMISAAMLGRTKCSLN 118
Query: 129 EVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPV 188
++SHD A L++ I +NV EVYVDTVGP Y+ L + FP++ I V+ K
Sbjct: 119 KLSHDCATELLKLAIDNNINVVEVYVDTVGPKGPYQAMLHKKFPDMQIIVSEK------- 171
Query: 189 VGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEG-IQIENNAWGSGYPGDPVTKK 247
AD+ +P+V AASI AKV RD AL++WTF EG I + N +GSGYPGDP TK
Sbjct: 172 --------ADAKFPIVSAASIVAKVKRDRALRNWTFPEGIINVPPNGYGSGYPGDPNTKN 223
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
FL ID VFG+P LVRFSW TA VL+ G + EN +I +FFKP
Sbjct: 224 FLLGAIDHVFGYPNLVRFSWKTAE-------VLLHGKTVKCTWSGPENASGSTITSFFKP 276
>gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus]
Length = 235
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/198 (60%), Positives = 142/198 (71%), Gaps = 20/198 (10%)
Query: 84 LTEKKRDDILDSICKENAW---LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
LTE+KRD I D + +++ +GW VE+ISPN IC SMLRR K SLNEVS D+AIGLI
Sbjct: 2 LTEEKRDVIFDEMNQKDYATESIGWAVEVISPNDICMSMLRRTKRSLNEVSMDSAIGLIN 61
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
K I AGVN+ EVYVDTVGPPE Y+ KL ++FP+ ITVA KAD ST
Sbjct: 62 KAIDAGVNIAEVYVDTVGPPEKYQAKLKQLFPKFKITVAKKAD---------------ST 106
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
YP+V AASICAKVSRD ALK WTF+EG++ E +GSGYPGDP TK FL + VFG+P
Sbjct: 107 YPIVSAASICAKVSRDHALKVWTFREGLE-EGINFGSGYPGDPTTKNFLG-TYELVFGYP 164
Query: 261 QLVRFSWSTASKILKEKA 278
+LVRFSWSTA K L++KA
Sbjct: 165 RLVRFSWSTAGKALEKKA 182
>gi|384253032|gb|EIE26507.1| ribonuclease HII [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 176/289 (60%), Gaps = 24/289 (8%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
+Q C +GIDEAGRGPVLGPMVYG AY E L + ADSK L E++R+ + I
Sbjct: 63 AQDCFMGIDEAGRGPVLGPMVYGCAYSAMSQMEALSQR-SFADSKTLKEERRESLFQEI- 120
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
KE+A +G V+I+ I ML Q+ SLN ++++A LI V+ GV +REVYVDTV
Sbjct: 121 KEDASIGTAVDILDARTISAQMLHSQRESLNVLANNATFRLIEGVLELGVRLREVYVDTV 180
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G ++ +L+E FP + V KA DS YP+V AASI AKV+RD
Sbjct: 181 GEASRHQARLTERFPGIRFIVCPKA---------------DSLYPIVSAASIVAKVTRDR 225
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+K ++ E +++ GSGYPGDP TK +L E+IDPVFGFP +VRFSWSTASKIL+
Sbjct: 226 LVKDFSIAEKVEVGRQT-GSGYPGDPDTKAWLQEHIDPVFGFPSIVRFSWSTASKILETG 284
Query: 278 AVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFK 326
AV V+ E D+E++ + ++ + N KP A V + V RHAFF+
Sbjct: 285 AVPVQW-ECDEEQDGSQGQQVLAFGN--KP-ARAQVSTGV--GRHAFFR 327
>gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana]
Length = 280
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/277 (46%), Positives = 172/277 (62%), Gaps = 21/277 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVYG YCP + + L +L ADSK L E+KR+D+ +S+ K +
Sbjct: 1 MGIDEAGRGPVLGPMVYGCMYCPI-SYQSSLASLHFADSKTLKEEKREDLYESL-KLDKS 58
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
LGW V++I P + ML + K +LNE+SH++A+GLI++V+ GV + E Y+DTVG P+
Sbjct: 59 LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDK 118
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
YK KLSE FP + V+ KADS +P+V ASI AKV+RD ALK W
Sbjct: 119 YKIKLSERFPSIKFVVSKKADSLFPIVSG---------------ASIVAKVTRDRALKEW 163
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK-EKAVLV 281
+E + N +GSGYPGDP TK +L ++ VFGFP LVRFSW T + LK E V
Sbjct: 164 LVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAW 223
Query: 282 EGDEIDDEEEEGENKKTRSIRNF-FKP--KADENVES 315
E DE ++ +K+ + +F FK K E +ES
Sbjct: 224 EADENEESGNGSSSKRQAKLSSFGFKTCEKRSEEIES 260
>gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 302
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 158/255 (61%), Gaps = 21/255 (8%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P P ++G+DEAGRGPVLGP+VYG AYCP E++ + LG ADSK L R +
Sbjct: 26 PTPTAPGPYIVGVDEAGRGPVLGPLVYGIAYCPASYKEDM-EELGFADSKTLNSDTRLSL 84
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L+++ + LGW V ++SP I + ML R +LN S DA I L+R+V+A G+ V EV
Sbjct: 85 LNTLSSQPENLGWSVRVVSPQAISSGMLCRPPTNLNRQSQDATILLLREVLAKGIQVSEV 144
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +G +Y+ LS +FP + TV +K ADS + +VGAAS+ AK
Sbjct: 145 YVDALGTTTTYEAYLSSLFPGIDFTVTTK---------------ADSKFKIVGAASVAAK 189
Query: 213 VSRDSALKSWTFQEGIQIENNAW-----GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
V+RD+ ++ WTF+E I E + W GSGYP DP T+ +L ++DPVFGFP+LVRFSW
Sbjct: 190 VTRDACVEGWTFEENIGKEGDKWSNATLGSGYPSDPNTQAWLKGSVDPVFGFPKLVRFSW 249
Query: 268 STASKILKEKAVLVE 282
+T IL++ A V+
Sbjct: 250 TTVKVILEKNAHAVK 264
>gi|406606142|emb|CCH42502.1| Ribonuclease H2 subunit A [Wickerhamomyces ciferrii]
Length = 343
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 129/283 (45%), Positives = 175/283 (61%), Gaps = 35/283 (12%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKKRDDILDSIC 97
+PCVLG+DEAGRGPVLGPMVYG +YC K N E +LK+ G ADSK L E KR ++L IC
Sbjct: 65 EPCVLGVDEAGRGPVLGPMVYGISYCLK-NYESILKSKYGFADSKTLNELKRTNLLKQIC 123
Query: 98 KENAWL----GWMVEIISPNVICNSMLRRQ---KYSLNEVSHDAAIGLIRKVIAAGVNVR 150
+ L GW ++ I + MLR Y+LNE +HDA + LI+ V+ GVN+
Sbjct: 124 DQEGELFEQIGWSTRTMTAMDISSGMLRPPSVGNYNLNEQAHDATMDLIQGVLDQGVNLT 183
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
E++VDTVGPP +Y+ KL + FP L I VA KA DS YP+V AASIC
Sbjct: 184 EIFVDTVGPPVTYQAKLQKRFPNLKIIVAKKA---------------DSIYPIVSAASIC 228
Query: 211 AKVSRDSALKSWTFQ-EGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
AKV+RD +L + Q G +I WGSGYP DP TKK+L+ +DP+FG+ Q+VRFSW T
Sbjct: 229 AKVTRDFSLNNSKDQLYGSEI---TWGSGYPSDPNTKKWLNNAVDPIFGWDQVVRFSWQT 285
Query: 270 A-SKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
A I+K + +E +E +++++ G+ + F+ KA +
Sbjct: 286 AKDAIIKNDGIEIEWEEDNEKDDYGD------VGKLFRDKASQ 322
>gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232311|emb|CCD79666.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 290
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/295 (45%), Positives = 172/295 (58%), Gaps = 28/295 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRGPVLGPMVY A P EL + +G ADSK L E +R+ +L + +
Sbjct: 1 MLGIDEAGRGPVLGPMVYACALSPISQLNEL-ETIGLADSKTLNENQREKLLKEMLNKCD 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W+ +V +ISP I ML + K SLN +SHD+AI LI+ V+ +GVN+ EVYVDTVG E
Sbjct: 60 WISAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAE 119
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ KL +FP+L I V SKAD TYP+V AASI AKV+RD L+
Sbjct: 120 HYETKLQNLFPQLKIRVESKAD---------------DTYPIVSAASIFAKVTRDRVLQM 164
Query: 222 WTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
W +E G E GSGYPGDPVTK +L +DPVFGFP LVR SWST+S +L + V
Sbjct: 165 WPKEERGSVPEGTGLGSGYPGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLLDQHGVS 224
Query: 281 VEGDEIDDEEEEGENKK----------TRSIRNFFKPKADENVESPVVEERHAFF 325
V ++ + EE + KK T + NFF A +P +R FF
Sbjct: 225 VRWEDDETHEEVLQAKKLARKREHSKGTCKLSNFFN-NAQSKSSTPDALQRQPFF 278
>gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga]
gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva]
Length = 277
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 155/240 (64%), Gaps = 21/240 (8%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPK-DNNEELLKN-LGCADSKALTEKKRDDILD 94
KS +LGIDEAGRGPVLGPMVYG +C K D+ + +LKN + DSK LTE R++
Sbjct: 20 KSDEVILGIDEAGRGPVLGPMVYGGFFCIKGDDCKSILKNKIRVDDSKKLTETMRENKFY 79
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+ N G + E+I+P I ML+R KY+LNE+SHD AI +IR V+ G N++EVY+
Sbjct: 80 QLNDPNYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVYI 139
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
D VG Y+ KLS++FP++ +V KA DS YP V AASI AKV
Sbjct: 140 DAVGTVNKYEAKLSKLFPKIHFSVREKA---------------DSIYPTVSAASIVAKVI 184
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
RD+ +K+W F ++EN GSGYPGDP TK FL+ N+D +FGFP +VR+SWSTAS +L
Sbjct: 185 RDNIIKNWKFD--FEVEN--IGSGYPGDPYTKDFLTNNMDKIFGFPDIVRYSWSTASHLL 240
>gi|403220433|dbj|BAM38566.1| ribonuclease [Theileria orientalis strain Shintoku]
Length = 284
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 164/266 (61%), Gaps = 22/266 (8%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKD-NNEELLKN-LGCADSKALTEKKRDD 91
E K +LGIDEAGRGPVLGPMVYG +CPK ++ +LKN + DSK LTE R++
Sbjct: 16 EISKDSDVILGIDEAGRGPVLGPMVYGGFFCPKGPDSTSILKNKIRVDDSKKLTEAYREN 75
Query: 92 ILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE 151
+ K G + E+I+P I ML+R KY+LNE+SH+ AI +IR VI+ G N++E
Sbjct: 76 KFHLLNKPEYPFGMIAEVITPQYISYKMLQRNKYNLNEISHETAISIIRHVISLGYNLKE 135
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VY+D VG Y+ KLS++FP++ +V KA DS YP V AASI A
Sbjct: 136 VYIDAVGTVSKYQSKLSKLFPKISFSVREKA---------------DSIYPTVSAASIIA 180
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV RD+ +++W ++ GSGYPGDP TK+FL+ N+D VFGFP +VRFSWSTA
Sbjct: 181 KVIRDNMIRAWRLDPIVK----NIGSGYPGDPSTKEFLTGNMDKVFGFPDIVRFSWSTAK 236
Query: 272 KILK-EKAVLVEGDEIDDEEEEGENK 296
+L+ + V VE + D E+E K
Sbjct: 237 NLLEGSEGVPVEWYDPDPEDERNNFK 262
>gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Komagataella pastoris CBS 7435]
Length = 314
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 163/262 (62%), Gaps = 30/262 (11%)
Query: 24 RNLIISSTIPESC---KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
R S IPES +PC LG+DEAGRGPV+GPMVYG +YC + E LK+ G AD
Sbjct: 30 RTTTYVSEIPESVLKNPEKPCCLGVDEAGRGPVVGPMVYGVSYC-LEEYEPRLKDFGFAD 88
Query: 81 SKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHD 133
SK LTE+KR ++L+S+C + L GW IS I ++ML+ Y+LNE +HD
Sbjct: 89 SKTLTEQKRSELLESLCNGDHELRKNVGWATTSISACDISSAMLKPHNIGNYNLNEQAHD 148
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+ LI KVI GVN+R VYVDTVGPP SY+KKL + FP L+ITV
Sbjct: 149 VTMELIDKVIQKGVNLRHVYVDTVGPPASYQKKLQQRFPALLITV--------------- 193
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
+ KAD+ YP V +AS+CAKV+RD L++ +E + GSGYP DP TKK+L+++I
Sbjct: 194 SKKADAIYPCVSSASVCAKVTRDVCLRTSNGEENLL----DCGSGYPSDPNTKKWLAQSI 249
Query: 254 DPVFGFPQLVRFSWSTASKILK 275
P+FG+ + VRFSW TA L+
Sbjct: 250 HPLFGWSRDVRFSWQTAKDCLE 271
>gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
gi|74896782|sp|Q54D13.1|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A
gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
Length = 289
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 173/286 (60%), Gaps = 28/286 (9%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
KS+P V+GIDEAGRGPV+GPMVYG Y P + LK++ DSK LTE++RD + D +
Sbjct: 17 KSEPFVMGIDEAGRGPVMGPMVYGCCYAPI-SKSTTLKSMKFNDSKKLTEQQRDQLFDKM 75
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ N L + ++I+ ++ ML ++ SLN +SH++AIGLIR V+ GVNV+E+Y+DT
Sbjct: 76 GESNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDT 135
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
VGPP+ Y+ L ++FPE+ + SK KADS YP+V AASI AKV RD
Sbjct: 136 VGPPDKYQLMLKKLFPEIGKIIVSK--------------KADSLYPIVSAASIAAKVVRD 181
Query: 217 SALKSWTF------QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
+ + F + Q+ + +GSGYP DP++KK+L +N D VFG+P +RFSW T
Sbjct: 182 FEITNKNFDYLNIYDQDEQLSTD-FGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTT 240
Query: 271 SKILKEKAV----LVEGDEIDDEEEEGENKKTRSIRNFFKPKADEN 312
++ ++E D++ +E +N K R + FFK EN
Sbjct: 241 ETAMRGACFGVDWVLENDKLKQHFQENQNDKKRFM--FFKENNIEN 284
>gi|426199388|gb|EKV49313.1| hypothetical protein AGABI2DRAFT_149543 [Agaricus bisporus var.
bisporus H97]
Length = 300
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 158/250 (63%), Gaps = 20/250 (8%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P P +LG+DEAGRGPVLGP+VYG AYCP +L + LG ADSK L + R +
Sbjct: 25 PRPTAEGPYILGVDEAGRGPVLGPLVYGVAYCPVSFKGKL-EGLGFADSKTLAAEARSSL 83
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
D++ E + LGW V +I P I + M++R +LN S +A LIR+ +A GV + EV
Sbjct: 84 FDTLSSEPSNLGWSVRVICPQAISSGMMKRPPINLNVQSREATFLLIRETLAKGVQLTEV 143
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +G +Y+K LSE+FP + TV +K ADS + +VGAAS+ AK
Sbjct: 144 YVDALGNTTTYEKDLSELFPGITFTVTTK---------------ADSKFKIVGAASVAAK 188
Query: 213 VSRDSALKSWTFQEGI---QIE-NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
V+RD+ ++ W F+E Q+E N A+GSGYP DP T+ +L EN++P FGFP++VRFSW+
Sbjct: 189 VTRDACIECWHFEETAGNDQVEWNKAFGSGYPSDPNTQIWLKENVEPTFGFPKVVRFSWT 248
Query: 269 TASKILKEKA 278
T +L+++A
Sbjct: 249 TVKVLLEKRA 258
>gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa]
Length = 303
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 162/272 (59%), Gaps = 28/272 (10%)
Query: 11 TEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNE 70
T VE+ + S++N ++ S PCV+GIDEAGRGPVLGPMVY A NNE
Sbjct: 9 TAVEAVMESSNNFKDF---------GSSMPCVVGIDEAGRGPVLGPMVYACAVTLV-NNE 58
Query: 71 ELLKNLGCADSKALTEKKRDDILDSICKENA--WLGWMVEIISPNVICNSMLRRQKYSLN 128
+L +G DSK LTE KR+ I + + +N G+ IS +I +ML R K SLN
Sbjct: 59 NILLEMGVDDSKVLTEAKREKIFERMEGDNMSELFGYAHCSISAQMISAAMLGRTKCSLN 118
Query: 129 EVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPV 188
++SHD A L++ I +NV EVYVDTVGP Y+ L + FP++ I V+ K
Sbjct: 119 KLSHDCATELLKLAIDNNINVVEVYVDTVGPKGPYQAMLHKKFPDMQIIVSEK------- 171
Query: 189 VGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEG-IQIENNAWGSGYPGDPVTKK 247
AD+ +P+V AASI AKV RD AL++WTF EG I + N +GSGYPGDP TK
Sbjct: 172 --------ADAKFPIVSAASIVAKVKRDRALRNWTFPEGIINVPPNGYGSGYPGDPNTKN 223
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEKAV 279
FL ID VFG+P LVRFSW TA +L K V
Sbjct: 224 FLLGAIDHVFGYPNLVRFSWKTAEVLLHGKTV 255
>gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
Length = 289
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 159/250 (63%), Gaps = 20/250 (8%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
++P ++GIDEAGRGPV+GP+VYG + P + K + DSK LTE++R+ + +C
Sbjct: 14 TKPFIMGIDEAGRGPVMGPLVYGCCFAPISETATISK-MKFNDSKKLTEQQRNHLFQKMC 72
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
N LG+ V++ISP ++ ML ++ SLN +SH++A+GLIR V++ G+NV+E+Y+DTV
Sbjct: 73 DSNKILGFEVDVISPEILSEKMLLKKPISLNVISHESAMGLIRSVLSKGINVQELYLDTV 132
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G P +Y+ L FPE+ V SK KADS YP+V AASICAKV RD
Sbjct: 133 GTPATYQAMLKNHFPEISKIVVSK--------------KADSLYPIVSAASICAKVIRDH 178
Query: 218 ALKSWTFQE-GIQIENNA----WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
+ S F + IQ E++ +GSGYP DPVTK +L++N D VFG+P +RFSWSTA
Sbjct: 179 EITSKNFDDLEIQDEDDQLSTEFGSGYPSDPVTKFWLTKNRDKVFGYPSFIRFSWSTADN 238
Query: 273 ILKEKAVLVE 282
++ VE
Sbjct: 239 AMRGNCFGVE 248
>gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus]
Length = 226
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 154/234 (65%), Gaps = 16/234 (6%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ VNV +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 YALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++D
Sbjct: 173 FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVD 226
>gi|403414687|emb|CCM01387.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/296 (42%), Positives = 175/296 (59%), Gaps = 35/296 (11%)
Query: 2 EEIHTASNVTEVESCIRSNDNSRNLIISSTI--PESCKSQPCVLGIDEAGRGPVLGPMVY 59
E + TA+N ++V S IR D+S LI S T P P +LG+DEAGRGPVLGP+VY
Sbjct: 4 ESVQTATN-SKVPS-IR--DSSVPLIASYTYHSPIPTAIGPYILGVDEAGRGPVLGPLVY 59
Query: 60 GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSM 119
G AYCP E+L +LG ADSK LT R +L ++C + A LGW V ++ P I + M
Sbjct: 60 GVAYCPTAYQEDL-DSLGFADSKTLTAGTRSSLLQTLCSDPANLGWSVRVLCPQAISSGM 118
Query: 120 LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVA 179
LRR +LN S A + LIR+V+ G+ + +VYVD +GP ++Y+ LS FP + TV
Sbjct: 119 LRRPPTNLNRQSEQATVLLIREVLQHGIKLSDVYVDALGPTKTYEAYLSSQFPGINFTVT 178
Query: 180 SKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEG---------IQI 230
+K ADS + +VGAAS+ AKV+RD+ ++ WTF+E +
Sbjct: 179 AK---------------ADSKFKIVGAASVAAKVTRDAWVEDWTFEESSSPHDAESNSKP 223
Query: 231 ENNAW----GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
N W GSGYP DP T+ ++ ++DP FGFP LVRFSW+T +L++ +V+
Sbjct: 224 TNTRWGKELGSGYPSDPKTQAWIKGSLDPTFGFPSLVRFSWTTIKLVLEKNGHVVQ 279
>gi|392594942|gb|EIW84266.1| ribonuclease HII [Coniophora puteana RWD-64-598 SS2]
Length = 298
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 122/279 (43%), Positives = 171/279 (61%), Gaps = 30/279 (10%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S +P S S P +LG+DEAGRGPVLGPMVYG A+CPK EE L+ +G ADSK LT +KR
Sbjct: 21 SHLPTS--SGPYILGVDEAGRGPVLGPMVYGVAFCPK-AYEEQLEGMGFADSKTLTPQKR 77
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+++L + + LGW V ++SP I MLR +LN+ + DA I LI++V+ G+ +
Sbjct: 78 EELLRVLNSDPYNLGWAVRVLSPQAISAGMLRNPPINLNKQAQDATILLIQEVLQKGIQL 137
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
E+YVD +G + Y LS IFP + TV K ADS + +VGAAS+
Sbjct: 138 SEIYVDALGDCDKYTALLSSIFPGIAFTVRKK---------------ADSLFKIVGAASV 182
Query: 210 CAKVSRDSALKSWTFQEGI-QIENNAW----GSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
AKV+RDS L++W ++E Q + W GSGYP DP T+ +L ++DP FGFP LVR
Sbjct: 183 GAKVTRDSCLENWVYEESTSQGDGEGWGNTIGSGYPSDPTTQAWLKSSVDPTFGFPSLVR 242
Query: 265 FSWSTASKILKEKAVLVEG-DEIDD------EEEEGENK 296
FSW+T +L+++A V+ DE +D E E+G ++
Sbjct: 243 FSWTTVKVLLEKEAHPVKWIDEGNDALIKAFEAEKGRDR 281
>gi|403374437|gb|EJY87169.1| Ribonuclease [Oxytricha trifallax]
Length = 373
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 162/264 (61%), Gaps = 21/264 (7%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K +PC +GIDEAGRGPVLGPMVYG + P +E K DSK L E++R+++ + I
Sbjct: 83 KDEPCEIGIDEAGRGPVLGPMVYGCTFWPISQRDEFKKQYKFTDSKQLNEQQREEMFEQI 142
Query: 97 --CKENAWLGWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRKVIAAGVNVRE 151
C E + LG+ ++ + + N ML K +LN +SHD AI LI+KV A GVNV+
Sbjct: 143 KSC-EFSRLGYFTAVLHADYLSNLMLAEMKSGGKNLNTISHDTAIDLIKKVKALGVNVKR 201
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
V +DTVG P SYK+ L + + + + SKAD +PVV AASICA
Sbjct: 202 VVLDTVGQPHSYKQLLHNRLKDDELEII-------------VESKADLNHPVVSAASICA 248
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV+RD L W F E +I+ + +G GYPGDP K++L N+DPVFGFP LVRFSW T S
Sbjct: 249 KVTRDQVLADWQFPEDKKIDTD-YGCGYPGDPKAKEWLKRNLDPVFGFPTLVRFSWKTCS 307
Query: 272 KILKEKAVLVE-GDEIDDEEEEGE 294
IL++ V + D+ID+++++ +
Sbjct: 308 TILEDNQVNINWRDDIDEKDKKQQ 331
>gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica]
gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica CLIB122]
Length = 315
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 167/287 (58%), Gaps = 33/287 (11%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK 98
+PC+LG+DEAGRGPVLG MVYG AYC K+ +E L G ADSK LT +KR ++ IC
Sbjct: 40 KPCILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICC 99
Query: 99 ENAW---LGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ LGW ++ I ++MLR R Y+LN+ +HD + LI+ V+ GV + E
Sbjct: 100 DETLVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTMALIQGVLDRGVLLTEA 159
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+DTVGPP SY KLS+ FP + TV K ADS +P+V AASICAK
Sbjct: 160 YIDTVGPPASYTAKLSKQFPHIKFTVTKK---------------ADSLFPIVSAASICAK 204
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
V+RD LKS EG WGSGYP DP T +L ++D VFG+ +VRFSW TA
Sbjct: 205 VTRDMDLKSQDLSEG------TWGSGYPSDPKTSVWLKSHVDQVFGWMPVVRFSWQTAKD 258
Query: 273 IL-KEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVV 318
++ KE+ VE DD + + ++S+ +F+ A + +S +V
Sbjct: 259 LVEKEEKGGVECVWADDLKRD-----SKSVEAYFRAAAKDKTKSKLV 300
>gi|402591687|gb|EJW85616.1| ribonuclease HII [Wuchereria bancrofti]
Length = 304
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 134/300 (44%), Positives = 173/300 (57%), Gaps = 35/300 (11%)
Query: 11 TEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNE 70
T VE+ +DN +N S PC +GIDEAGRGPVLGPMVY A NNE
Sbjct: 9 TVVEAVTEFSDNFKNF---------GSSMPCTIGIDEAGRGPVLGPMVYACAVTLV-NNE 58
Query: 71 ELLKNLGCADSKALTEKKRDDILDSICKENA--WLGWMVEIISPNVICNSMLRRQKYSLN 128
+L +G DSK LTE KR++I + + N G+ IS +I +MLRR KYSLN
Sbjct: 59 NMLTRMGIDDSKVLTEAKREEIFERMKGSNMSEVFGYACRSISAQMISAAMLRRTKYSLN 118
Query: 129 EVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPV 188
++SHD A L++ + +NV EVYVDTVGP Y+ L + FP++ I V+ K
Sbjct: 119 KLSHDCATELLKLAVENNINVVEVYVDTVGPKGPYQAMLHKKFPDMQIIVSEK------- 171
Query: 189 VGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGI-QIENNAWGSGYPGDPVTKK 247
AD+ +P+V AASI AKV RD AL++WTF EGI + +GSGYPGDP TK
Sbjct: 172 --------ADAKFPIVSAASIIAKVKRDRALRNWTFPEGIVNVLPGGYGSGYPGDPNTKN 223
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
FL + +D VFG+P LVRFSW TA +L+ KAV + EN +I +FFKP
Sbjct: 224 FLLDAVDQVFGYPNLVRFSWKTAEVLLQRKAVKCKW-------SNAENAPGSTITSFFKP 276
>gi|429328791|gb|AFZ80551.1| ribonuclease H1 large subunit, putative [Babesia equi]
Length = 288
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 164/278 (58%), Gaps = 23/278 (8%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCP-KDNNEELLK-NLGCADSKAL 84
+ S++P K P LGIDEAGRGPVLG MV+G +CP +E +LK ++ DSK L
Sbjct: 12 LYKSSLP--SKETPVALGIDEAGRGPVLGAMVFGGFFCPIGAESEAILKGDIKVDDSKKL 69
Query: 85 TEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA 144
E R+ + E G + ++++P I ML+R KY+LNE+SHD I +IR VI+
Sbjct: 70 NELAREYKFRQLHDETLPFGLIADVVTPQYISYKMLQRTKYNLNEMSHDTEISIIRHVIS 129
Query: 145 AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVV 204
AG N++E+YVDTVG Y+ KL +FP + I VA KA DS +PVV
Sbjct: 130 AGYNLKEIYVDTVGVESKYEAKLKNLFPNIHIKVAKKA---------------DSLFPVV 174
Query: 205 GAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
AASI AKV RD+ +K W+ G + GSGYPGD T +FLSEN+ +FGFP +VR
Sbjct: 175 SAASIVAKVVRDNIIKCWSNSYG----TSNIGSGYPGDAYTIRFLSENLHKIFGFPDIVR 230
Query: 265 FSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIR 302
FSW TAS +L ++ + DD EEE + ++++
Sbjct: 231 FSWRTASDMLNDQKRSAIFNWYDDLEEENDELSKKTVK 268
>gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo]
gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis]
Length = 264
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 158/267 (59%), Gaps = 20/267 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCP-KDNNEELLK-NLGCADSKALTEKKRDDILDSICKEN 100
LGIDEAGRGPVLGPMVYG+ CP D +LK N+G DSK LT RD ++
Sbjct: 5 LGIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNIGVDDSKKLTASLRDSKFRALNGPE 64
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
E+I+P I ML+R+ Y+LN +SHD+AI LIR I+ G N+ EVYVD VGP
Sbjct: 65 TPFAMCAEVITPRYISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGPA 124
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
Y+ L+++FP++ VA+KA DS +PVV AASI AKV RD+ +
Sbjct: 125 AKYEAMLTQLFPKIKCVVANKA---------------DSIFPVVSAASIVAKVIRDNIID 169
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
SW F++ E GSGYPGDPVTK+FLS ++D +FGF VR SWSTA IL ++
Sbjct: 170 SW-FKD--SPERVDVGSGYPGDPVTKQFLSSHLDRLFGFSSFVRVSWSTAKSILDDETRA 226
Query: 281 VEGDEIDDEEEEGENKKTRSIRNFFKP 307
V + D + EE E+ + R + P
Sbjct: 227 VPFEWYDPDSEEEESDRARQLHEVRWP 253
>gi|343427877|emb|CBQ71403.1| related to 35 kDa ribonuclease H [Sporisorium reilianum SRZ2]
Length = 464
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 158/270 (58%), Gaps = 46/270 (17%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLG+DEAGRGPVLGP+VYG AYCP + ++ L +G ADSKALT ++R +L ++ E
Sbjct: 72 PCVLGVDEAGRGPVLGPLVYGIAYCPV-SYQDSLAQIGFADSKALTPERRSTLLTALI-E 129
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ LGW V +++P I MLRR+ +LN S A + LI+ V+ +GV+V E+YVDTVG
Sbjct: 130 DETLGWAVRVMAPQDISAGMLRRRPVNLNAQSSSATVSLIQGVLDSGVDVTEIYVDTVGD 189
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+SY + L+ FP +P V + SKAD+ YP+VGAASI AKV+RD +
Sbjct: 190 AKSYARLLASHFPR------------HPHVKWTVTSKADAIYPIVGAASIAAKVTRDRCV 237
Query: 220 KSWTFQE-----------------GIQIEN---------------NAWGSGYPGDPVTKK 247
+ W + E G +E A GSGYPGDP T
Sbjct: 238 EGWRYAEQPVRTECVLGDATNVLHGEAMERKRKECDDDVDVWTSMGALGSGYPGDPNTVA 297
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+L +DPVFG+P +VRFSW+TA +L EK
Sbjct: 298 YLKRTLDPVFGWPGIVRFSWATAKTMLDEK 327
>gi|409048828|gb|EKM58306.1| hypothetical protein PHACADRAFT_182662 [Phanerochaete carnosa
HHB-10118-sp]
Length = 294
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 166/293 (56%), Gaps = 38/293 (12%)
Query: 12 EVESCIRSNDNSRNLIISSTI--PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNN 69
E ++ I S D + L S T P+ P +LG+DEAGRGPVLGP+VYG AYCP
Sbjct: 2 EEQTGIPSADVTSPLTASYTYHSPKPTAEGPYILGVDEAGRGPVLGPLVYGVAYCPASYK 61
Query: 70 EELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNE 129
E+L K LG ADSK L R +LD++ + A +GW V +++P I MLR +LN
Sbjct: 62 EDLDK-LGFADSKTLNASTRSSLLDTLSSDPANIGWSVRVLAPQAISAGMLRHPPINLNR 120
Query: 130 VSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV 189
S DA I LIR+V+ +GV + EVYVD +GPP++++K LS +FP + TV
Sbjct: 121 QSEDATILLIREVLESGVKLSEVYVDALGPPQAWEKALSTMFPGISFTV----------- 169
Query: 190 GAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQ----------------IENN 233
+KADS + +V AAS+ AKV+RD+ ++ W F+E ++
Sbjct: 170 ----TAKADSKFKIVSAASVAAKVTRDAWIEGWMFEEAYVSEEEEEEEEEGSAEKVMDET 225
Query: 234 AW----GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
W GSGYPGDP T ++ +++P FGFP L RFSW+T L++ A VE
Sbjct: 226 KWGGPIGSGYPGDPKTVAWIQSSLEPTFGFPSLARFSWTTIKVALEKHAHPVE 278
>gi|336383681|gb|EGO24830.1| hypothetical protein SERLADRAFT_361719 [Serpula lacrymans var.
lacrymans S7.9]
Length = 329
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 154/254 (60%), Gaps = 24/254 (9%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P P +LG+DEAGRGPVLGP+VYG AYCP +L + LG ADSK LT +KR +
Sbjct: 32 PTPTAPGPYILGVDEAGRGPVLGPLVYGVAYCPASYQADL-EELGFADSKTLTAEKRSLL 90
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L + + LGW V +ISP I + MLR +LN S DA I LIR+VI G+ + EV
Sbjct: 91 LSILGSDPKNLGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEV 150
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +G +Y+ LS +FP + TV +K ADS + +VGAAS+ AK
Sbjct: 151 YVDALGTTTTYEAYLSSVFPGINFTVTTK---------------ADSKFKIVGAASVAAK 195
Query: 213 VSRDSALKSWTFQE--GIQIENNA------WGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
V+RD+ L+ W F+E G ++ N++ +GSGYP DP T+ +L +IDP FGFP +VR
Sbjct: 196 VTRDACLEGWIFEESKGNKVVNSSSTWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSVVR 255
Query: 265 FSWSTASKILKEKA 278
FSW+T IL+ +
Sbjct: 256 FSWTTVKVILEREG 269
>gi|440800045|gb|ELR21088.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 292
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 154/251 (61%), Gaps = 21/251 (8%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
LGIDEAGRGPVLGPMVY AYCP E + G DSK L+E +R+ + + I
Sbjct: 13 ALGIDEAGRGPVLGPMVYACAYCPLSEKENIRTRDGFQDSKQLSEHQRESMFERIVGAPD 72
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G+ I+S + N MLR KY+LN++SHD A LI + + GV ++EVYVDTVG P
Sbjct: 73 -VGFEACILSAEDLSNKMLRASKYNLNQISHDTAAELIARALTKGVPLKEVYVDTVGDPG 131
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y++ LS FP L ITV+ KADS +P+V AASI AKV RD L++
Sbjct: 132 RYQENLSRKFPRLAITVSKKADSLFPIVS---------------AASIVAKVIRDQCLRT 176
Query: 222 WTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE---K 277
W F+E G++ + +GSGYP DP TK++L ++D +FG+P L+RFSW+T +L++
Sbjct: 177 WKFKEKGVEF-SREFGSGYPADPFTKQWLEGSLDKLFGYPTLIRFSWATTDNMLEDHDAH 235
Query: 278 AVLVEGDEIDD 288
AV E D DD
Sbjct: 236 AVAWEADVNDD 246
>gi|389749729|gb|EIM90900.1| ribonuclease H2 subunit A [Stereum hirsutum FP-91666 SS1]
Length = 317
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/272 (43%), Positives = 162/272 (59%), Gaps = 34/272 (12%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P S P +LG+DEAGRGPVLGP+VYG AYCP EEL + LG ADSK LT R +
Sbjct: 30 PTPTASGPYILGVDEAGRGPVLGPLVYGIAYCPASYQEEL-EGLGFADSKTLTATTRSAL 88
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L S+ + + LGW V ++SP I + MLRR +LN S DA + LIR+V+ G+ + EV
Sbjct: 89 LKSLSDDPSNLGWSVRVVSPQAISSGMLRRPPTNLNRQSEDATVLLIREVLQRGLELSEV 148
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +GP ++Y+ LS FP + TV +K ADS + +VGAAS+ AK
Sbjct: 149 YVDALGPTKTYEAYLSSQFPGINFTVTAK---------------ADSKFKIVGAASVAAK 193
Query: 213 VSRDSALKSWTFQEG---------IQIENNA---W----GSGYPGDPVTKKFLSENIDPV 256
V+RD+ ++ W ++E +Q + A W GSGYP DP TK+++ ++D
Sbjct: 194 VTRDAWIEGWIYEEDSPSSDKQYELQSTSEAKRRWASEFGSGYPSDPKTKEWIKLSLDRT 253
Query: 257 FGFPQLVRFSWSTASKILKEKAVLVEGDEIDD 288
FGFP VRFSW+TA L+++A V+ IDD
Sbjct: 254 FGFPSFVRFSWTTAKVALEKEAHDVQW--IDD 283
>gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
Length = 321
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 166/279 (59%), Gaps = 32/279 (11%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
++QP VLG+DEAGRGPVLGPMVY A+CP E L G ADSK LT +KR +L ++
Sbjct: 56 RTQPFVLGVDEAGRGPVLGPMVYAVAFCP---TELKLSEYGFADSKQLTAEKRTQLLQAV 112
Query: 97 CKEN----AWLGWMVEIISPNVICNSMLRR-QKYSLNEVSHDAAIGLIRKVIAAGVNVRE 151
C N +GW +++ I MLRR KY+LN +HD+ I LI+ V+ AG N+ E
Sbjct: 113 CDRNNPASTSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISE 172
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+YVDTVGPP Y+ KL FP+ +TV KADS +P+V ASICA
Sbjct: 173 IYVDTVGPPAVYQAKLQNRFPQAKVTV---------------TKKADSLFPIVSLASICA 217
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTA 270
KV+RD+ L+ +E + I+N WG GY D T +L +N+ PVFG+ +VR+SW TA
Sbjct: 218 KVTRDAHLER--TREALDIDN--WGCGYSSDSQTTAWLRKNVHPVFGWKGHVVRYSWQTA 273
Query: 271 SKILK-EKAVLVEGDEIDDEEEEG---ENKKTRSIRNFF 305
+L+ K +V+ D D+++++ +K T R++F
Sbjct: 274 KNLLEIGKNGMVDMDWHDEQDKQSVITMHKTTTDGRSWF 312
>gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1723422|sp|Q10236.1|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe]
Length = 326
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 165/284 (58%), Gaps = 28/284 (9%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK 74
S +SN N S+ + KSQP LG+DEAGRGPVLGPMVY AYCP D + L
Sbjct: 38 SVNKSNPAKSNYYHSTVTDDISKSQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD---LT 94
Query: 75 NLGCADSKALTEKKRDDILDSICKENAWLG----WMVEIISPNVICNSMLR-RQKYSLNE 129
N G ADSK L KR+++L IC ++ LG W IS + MLR R KY+LN
Sbjct: 95 NYGFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNL 154
Query: 130 VSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV 189
+HD I LI+KV +G+NV E+YVDTVGPP SY++KL FP+ +TV
Sbjct: 155 QAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFPQAKVTV----------- 203
Query: 190 GAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL 249
KADS +P+V ASICAKV+RD L+ +E I+ EN WGSGY D T ++L
Sbjct: 204 ----TKKADSLFPIVSLASICAKVTRDIQLE--CARESIRTEN--WGSGYSSDARTTEWL 255
Query: 250 SENIDPVFGFP-QLVRFSWSTASKILKEKAVLVEGDEIDDEEEE 292
N+D +FG+ +VR+SW TA +L+ + EID E++
Sbjct: 256 KVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIEIDWHEDD 299
>gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
Length = 551
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 182/355 (51%), Gaps = 58/355 (16%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLG+DEAGRGPVLGP+VYG AYCP ++L K +G ADSKALT ++RD +L ++ +
Sbjct: 88 PCVLGVDEAGRGPVLGPLVYGIAYCPVSYQDDL-KQIGFADSKALTAERRDSLLSALIDQ 146
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
N+ LGW V ++SP I MLRR+ +LN S A + LI V+ +GV++ E+YVDTVG
Sbjct: 147 NSHLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLESGVDLTEIYVDTVGD 206
Query: 160 PESYKKKLSEIFP---ELIITVASKADSTYPVVGAA-IASKAD----------------- 198
P+SY K LS FP + TV SKAD+ YP+VGAA IA+K
Sbjct: 207 PKSYSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAKVTRDRCVDAWRYAEQQQQR 266
Query: 199 -STYPVVGAASICAKVSRDS---------------------------ALKSWTFQEGIQI 230
P A AKV D+ AL S T + +
Sbjct: 267 LPALPTDAAKPHQAKVLVDATNQPSCSPDASNESKKPNAESPSQPDLALSSDT--DHVWS 324
Query: 231 ENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEE 290
A GSGYP DP T FL +DPVFG+P LVRFSW+TA +L+EK V
Sbjct: 325 NLGALGSGYPADPNTVAFLKRTLDPVFGWPGLVRFSWATAKTMLEEKVKPVTAHSAKSVL 384
Query: 291 EEG------ENKKTRSIRNFFKPKADENVESPVVEERHAFFKESPYGGSKVFEVL 339
+ + TRS+ + +D + +P + + + F SP ++ +
Sbjct: 385 QAALPPLSRGKRLTRSLSSTCSLASDISAATPDSQPQTSQFVTSPTRAVSIYGTI 439
>gi|389584587|dbj|GAB67319.1| ribonuclease H1 large subunit [Plasmodium cynomolgi strain B]
Length = 279
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 137/218 (62%), Gaps = 16/218 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRGPVLGPMVY YC K++ E+LLK + DSK ++E R+ + +
Sbjct: 19 LGIDEAGRGPVLGPMVYAGFYCNKEH-EKLLKEMKIDDSKKISEADREMMFLKLNNSTLP 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
GW + ++ P I ML++QKY+LNE+SHD AI +I VI G N+ EV+VDTVG
Sbjct: 78 FGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVINRGCNLTEVFVDTVGKASV 137
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y++KL ++FP + TV KAD S YPVV AASICAKV+RD +K W
Sbjct: 138 YEEKLKKLFPHIKCTVKEKAD---------------SLYPVVSAASICAKVTRDFLIKKW 182
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
++E I + +GSGYPGDP+TK FL N D VFGFP
Sbjct: 183 KYEEPIVNIDKGFGSGYPGDPITKNFLKNNFDSVFGFP 220
>gi|336370925|gb|EGN99265.1| hypothetical protein SERLA73DRAFT_160724 [Serpula lacrymans var.
lacrymans S7.3]
Length = 313
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 160/270 (59%), Gaps = 29/270 (10%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P P +LG+DEAGRGPVLGP+VYG AYCP +L + LG ADSK LT +KR +
Sbjct: 32 PTPTAPGPYILGVDEAGRGPVLGPLVYGVAYCPASYQADL-EELGFADSKTLTAEKRSLL 90
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE- 151
L + + LGW V +ISP I + MLR +LN S DA I LIR+VI G+ + E
Sbjct: 91 LSILGSDPKNLGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEV 150
Query: 152 -VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
VYVD +G +Y+ LS +FP + TV + KADS + +VGAAS+
Sbjct: 151 GVYVDALGTTTTYEAYLSSVFPGINFTVTT---------------KADSKFKIVGAASVA 195
Query: 211 AKVSRDSALKSWTFQE--GIQIENNA------WGSGYPGDPVTKKFLSENIDPVFGFPQL 262
AKV+RD+ L+ W F+E G ++ N++ +GSGYP DP T+ +L +IDP FGFP +
Sbjct: 196 AKVTRDACLEGWIFEESKGNKVVNSSSTWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSV 255
Query: 263 VRFSWSTASKILKEKAVLVEGDEIDDEEEE 292
VRFSW+T IL+ + G + DE +E
Sbjct: 256 VRFSWTTVKVILEREG---HGAKWIDEGQE 282
>gi|449540326|gb|EMD31319.1| hypothetical protein CERSUDRAFT_163191 [Ceriporiopsis subvermispora
B]
Length = 318
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 161/273 (58%), Gaps = 36/273 (13%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P P +LG+DEAGRGPVLGPMVYG AYCP + L +++G DSKAL + R +
Sbjct: 31 PTPTDPGPYILGVDEAGRGPVLGPMVYGVAYCPASYKDRL-EDMGFDDSKALKPETRASL 89
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L ++C ++ L W V ++SP I N MLRR +LN + A I LIR+V+ +G+ + E+
Sbjct: 90 LKTLCSDSENLAWSVRVLSPQGISNGMLRRPPVNLNRQAEQATILLIREVLQSGIQLSEI 149
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +G E+Y+ LS+ FP + ITV +KADS + +VGAAS+ AK
Sbjct: 150 YVDALGNTETYQTYLSKQFPGINITVKAKADSLF---------------KIVGAASVAAK 194
Query: 213 VSRDSALKSWTFQE---------GIQIE---NNAW----GSGYPGDPVTKKFLSENIDPV 256
V+RD+ ++ W F+E G + N +W GSGYP DP TK ++S++++P
Sbjct: 195 VTRDAWIEGWKFEEQRPQLVATPGASLSTVLNPSWGEEFGSGYPSDPKTKAWISKSLEPT 254
Query: 257 FGFPQLVRFSWSTASKILKEKAVLV----EGDE 285
FGFP VRFSW+T L + A V EG+E
Sbjct: 255 FGFPSFVRFSWTTVKNELDKSAHAVTWTDEGNE 287
>gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus]
Length = 211
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 143/225 (63%), Gaps = 23/225 (10%)
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+GW + I+SPN I SM RR KY+LN +SHD AIGLI+ + +GV + EV+VDTVGP E
Sbjct: 1 VGWALHILSPNFISTSMQRRTKYNLNALSHDTAIGLIQHALDSGVQLAEVFVDTVGPAEK 60
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y++KL + FPEL +TV +KADS +P V AASICAKV+RD +K+W
Sbjct: 61 YQEKLKQQFPELEVTVRAKADSLFPTVS---------------AASICAKVARDRIVKNW 105
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
F E ++ +GSGYP DP TK++L++N+DP+FG+PQ VRFSWSTA IL+ KAV V
Sbjct: 106 KFLENLEDTEMDYGSGYPNDPKTKEWLAQNLDPIFGYPQFVRFSWSTAQLILESKAVPVH 165
Query: 283 GDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKE 327
DD E+ + +S+ ++F K + +P H FF E
Sbjct: 166 W---DDTEDGPSQQSAKSLLSYFTRKVSPSKRTP-----HRFFYE 202
>gi|399218230|emb|CCF75117.1| unnamed protein product [Babesia microti strain RI]
Length = 277
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 163/272 (59%), Gaps = 27/272 (9%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGP+VYG +C D EL ++ DSK L+E+ R+ + N
Sbjct: 31 IGIDEAGRGPVLGPLVYGGFFCSNDVENELKMDIKVDDSKKLSEESREAKFKLLTNVNKP 90
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
G++ ++I+P I +MLR QKY+LN++SHD+A+ +IR VI+ G ++ VY+D VGP E+
Sbjct: 91 FGFVAQLITPQHISTAMLREQKYNLNQISHDSALNIIRHVISIGYKLKSVYIDAVGPTEA 150
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
YK K+ FP L + +A +AD STYP+V AASI AKV RD +K+W
Sbjct: 151 YKMKVKANFPNLKVIIAERAD---------------STYPLVSAASIIAKVLRDRTVKAW 195
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
+ ++ +G GYP DP+TK++L ++ D +FGFP +R SW+TA A L +
Sbjct: 196 ESSDKYKL---PFGCGYPSDPLTKEYLKKSFDKIFGFPPHIRSSWATAD------AFLSK 246
Query: 283 GDEIDDEEEEGENKKTRSIRNFFKPKADENVE 314
+D + E G NKK+ I P+ D+ V+
Sbjct: 247 SLPVDWKLEGGSNKKSPLI---VTPELDDIVQ 275
>gi|393221211|gb|EJD06696.1| hypothetical protein FOMMEDRAFT_165421 [Fomitiporia mediterranea
MF3/22]
Length = 336
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 146/250 (58%), Gaps = 20/250 (8%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P P +LG+DEAGRGP LGPMVYG AYCP +L + LG ADSKALT R +
Sbjct: 61 PTPTAKGPYILGVDEAGRGPALGPMVYGVAYCPVSYKGQL-EELGFADSKALTHDNRAGL 119
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L+ + + LGW V +ISP I + MLRR +LN+ + +A I LI++V+ G+ + EV
Sbjct: 120 LEILSSDPENLGWSVRVISPQAISSGMLRRPPTNLNKQAENATITLIQEVLDRGIVLSEV 179
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +G +Y+K LS +FP + TV +K ADS + +VGAASI AK
Sbjct: 180 YVDALGNTTTYEKHLSNLFPNISFTVTAK---------------ADSKFKIVGAASIAAK 224
Query: 213 VSRDSALKSWTFQEGIQIENNAW----GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
V+RD+ + W F+E W GSGYP DP T+ +L + ++P FG+P L RFSW
Sbjct: 225 VTRDAWITGWAFEEHESSPQYTWPDERGSGYPSDPKTQAWLRDAVEPTFGYPSLARFSWG 284
Query: 269 TASKILKEKA 278
T L + A
Sbjct: 285 TIKVALDKNA 294
>gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
Length = 306
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 175/318 (55%), Gaps = 44/318 (13%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
+N + +I S +P+ KS PC+LG+DEAGRGPVLGPMVYG AYCP + EE LK LG AD
Sbjct: 9 NNKSSAVIKSAVPDVAKSYPCMLGVDEAGRGPVLGPMVYGIAYCPVEF-EEDLKRLGFAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE+KR++++ + + + LGWMVE+ISP VICN ML KYSLN +SHD+AIGLI+
Sbjct: 68 SKTLTEEKREELVGVMEQRSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAIGLIK 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ + GV V EV ++ P K P+L AS+ ++
Sbjct: 128 QALDDGVCVTEVKLERPENPLHESK-----LPKL--RHASR----------------NTN 164
Query: 201 YPVVGAASICAKVS---------RDSALKSWTFQEGIQIENN----AWGSGYPGDPVTKK 247
GA +I +++ L F G ++ + WG DP TKK
Sbjct: 165 RHAFGARTIIFRIALLFHRHFECSTFHLSKKKFHGGRSMDCSNSLLLWGVVLLSDPATKK 224
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
FLS ++D VFGFP LVRFSWSTA K+L++ + V E+ SI++FF
Sbjct: 225 FLSAHVDNVFGFPSLVRFSWSTAEKLLEDNSATVSW-----YAEKATQNNIASIQSFF-- 277
Query: 308 KADENVESPVVEERHAFF 325
K D N + V + AFF
Sbjct: 278 KRDPNHTAKVAPKESAFF 295
>gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
Length = 308
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 165/288 (57%), Gaps = 24/288 (8%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PC+LG+DEAGRGPVLGPMVY +A+CP ++ + G ADSK LT + R+ + +I
Sbjct: 33 PCILGVDEAGRGPVLGPMVYASAFCPLSSD---ISGRGYADSKTLTHEAREKLFRAI-DA 88
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
N +GW+ I+S I ++ML R K SLN ++ DA +IR + +G +V++VYVDTVG
Sbjct: 89 NTSVGWVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVIRTALESGASVKQVYVDTVGD 148
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + ++LS FP + TV KA DS YP+V AASI AKV RD +L
Sbjct: 149 ADRHSERLSRAFPGISFTVCPKA---------------DSLYPIVSAASIIAKVIRDKSL 193
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV 279
G+Q E G+GYPGD T +L E+I PV GFP LVR SW T +++L+
Sbjct: 194 IDCRQALGLQGEV---GTGYPGDATTVAWLKEHIHPVLGFPPLVRHSWETCARMLEPPEA 250
Query: 280 LVEGDEIDDEEEE-GENKKTRSIRNFFKPKADENVESPVVEERHAFFK 326
+ E DD + G + ++ NF +P VE+ + RH FF+
Sbjct: 251 ISVNFEADDAADGLGTSGSSQQRLNFVRPGGAGVVETSGL-GRHTFFR 297
>gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis]
gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis]
Length = 569
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 129/173 (74%), Gaps = 2/173 (1%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DNS+N II S IPE +++PC +GIDEAGRGPVLGPMVYG YCP EEL K G AD
Sbjct: 9 DNSKNCIIKSKIPEIARNEPCCVGIDEAGRGPVLGPMVYGICYCPLSKAEEL-KTTGFAD 67
Query: 81 SKALTEKKRDDILDSICKE-NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
SK LTE++R+ + + + + ++GW+++I++PN + N ML+R K SLNEVSH++AIGLI
Sbjct: 68 SKTLTEEEREALFKELSENCHGYMGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLI 127
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA 192
R ++ +GV V+EVYVDTVGP E Y+ KL +IFPE I V KAD+ +PVV AA
Sbjct: 128 RLLLDSGVKVQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKADAKFPVVSAA 180
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 107/162 (66%), Gaps = 17/162 (10%)
Query: 80 DSKALTEKKRDDILDSICKE-NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL 138
DSK LTE++R+ + + + + ++GW+++I++PN + N ML+R K SLNEVSH++AIGL
Sbjct: 326 DSKTLTEEEREALFKELSENCHGYMGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGL 385
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
IR ++ +GV V+EVYVDTVGP E Y+ KL +IFPE I V K AD
Sbjct: 386 IRLLLDSGVKVQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPK---------------AD 430
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYP 240
+ +PVV AAS+CAKVSRD + +W F E I I GSGYP
Sbjct: 431 AKFPVVSAASVCAKVSRDRVISAWEFSEDI-IFTKETGSGYP 471
>gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
Length = 286
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 157/256 (61%), Gaps = 25/256 (9%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P S +LG+DEAGRGPVLGP+VYG AY + +E ++ +G ADSK L +R+ +
Sbjct: 22 PIPTASGKYILGVDEAGRGPVLGPLVYGVAYV-AETGKERMEAMGFADSKTLDAARREAL 80
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L+++C LGW V +ISP + + MLRR +LNE S DA + LIR V+A G+ + V
Sbjct: 81 LETLCSAPDVLGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGVLARGIQLSAV 140
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+VD +GP +Y++ LS+ FPE+ TVA +KADS + +VGAAS+ AK
Sbjct: 141 FVDALGPTVAYEQWLSQRFPEIKFTVA---------------NKADSKFKIVGAASVAAK 185
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
V+RD+ + + F E GSGYP DP TK +L+ ++P FGFP+ VRFSW+T+
Sbjct: 186 VTRDALIDASRFPA----ER---GSGYPSDPKTKAWLAAAVEPTFGFPRAVRFSWATSKV 238
Query: 273 ILKEKAVLVEGDEIDD 288
IL + A V+ IDD
Sbjct: 239 ILDKHAHAVQ--WIDD 252
>gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Ogataea parapolymorpha DL-1]
Length = 303
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 162/263 (61%), Gaps = 31/263 (11%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
++P +LG+DEAGRGPVLGPMVYG AYC KD + +L G ADSK LT ++RD ++ SI
Sbjct: 38 NEPVILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQLMKSII 97
Query: 98 KENAWL----GWMVEIISPNVICNSMLRRQ---KYSLNEVSHDAAIGLIRKVIAAGVNVR 150
+ + L GW ++ I + ML+ + +LNE +HDA I LI+ V+ VN++
Sbjct: 98 EPDGDLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQKVNLK 157
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
EVYVDTVGPP+SY++KLS FP + +TV KADS +P+V ASI
Sbjct: 158 EVYVDTVGPPDSYQRKLSSRFPGIKVTV---------------TKKADSLFPIVSTASIV 202
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
AKV+RD +L + +G WGSGYP DP T ++L+ N+ PVFG+ +VRFSW T+
Sbjct: 203 AKVTRDCSL--YYLADGAD-----WGSGYPSDPRTSQWLNSNVHPVFGWNSMVRFSWQTS 255
Query: 271 -SKILKEKAV-LVEGDEIDDEEE 291
++K AV +V DE+ ++
Sbjct: 256 RDALVKSGAVPMVWEDELQTSDD 278
>gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS
6054]
gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 347
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 159/262 (60%), Gaps = 29/262 (11%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK 98
+P VLG+DEAGRGPVLGPMVYG A+ + + L K G ADSK L E+KRD++ SI
Sbjct: 69 EPVVLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIED 128
Query: 99 E----NAWLGWMVEIISPNVICNSMLRR----QKYSLNEVSHDAAIGLIRKVIAAGVNVR 150
E N +GW ++ I + MLR Y+LNE +HD I LI++VIA GVNV+
Sbjct: 129 EANELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVK 188
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
++YVDTVGPP +Y+ KL +IFPE +TVA K ADS YP+V AS+
Sbjct: 189 KIYVDTVGPPVTYQAKLQKIFPETEVTVAKK---------------ADSIYPIVSTASVM 233
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF-PQLVRFSWST 269
AKV+RD+ ++ W ++ + GSGYP DP T K+L+ N+D VFG+ +RFSW T
Sbjct: 234 AKVTRDANIR-WYNHNLDVLKGHKLGSGYPSDPNTSKWLNGNVDKVFGWCYGFIRFSWQT 292
Query: 270 ASKILKEKAVLVEGDEIDDEEE 291
A K+ V +G E+ E+E
Sbjct: 293 A----KDSLVKHDGVEVIYEDE 310
>gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 320
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 131/297 (44%), Positives = 169/297 (56%), Gaps = 30/297 (10%)
Query: 27 IISSTIPESCKS----QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
+ISS IP C+ +LGIDEAGRGPVLGPM YG AY +++E+ G DSK
Sbjct: 32 LISSKIPPRCRGLDGEGGVILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAK-GFDDSK 90
Query: 83 ALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV 142
ALT +R + D I + +GW++ +IS + + M R+ YSLN +SHDAA LIR V
Sbjct: 91 ALTSDQRTSLFDRIDRTPE-VGWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAV 149
Query: 143 IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
A GV V +VYVDTVG P Y+ KL + F + I V +A KADS Y
Sbjct: 150 QARGVKVTQVYVDTVGDPAFYQSKLEKEFGKGIKFV--------------VAKKADSLYK 195
Query: 203 VVGAASICAKVSRDSALKSWTFQE-GIQI-ENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
AASI AKV+RD ++ W + E + E+ +GSGYPGD KK+L N+DPVFGFP
Sbjct: 196 TASAASIVAKVTRDRIVEGWQWSEPNLDFSEDRKYGSGYPGDEKCKKWLESNVDPVFGFP 255
Query: 261 QLVRFSWSTASKILKEKAV-LVEGDEIDDEEEEGENKKTRSIRNFF---KPKADENV 313
+ RFSW T +ILK V+ +E DEE G N SI +F K KA N+
Sbjct: 256 DICRFSWGTTKEILKGPTRKRVDWEEEPDEEAAGMN----SIASFMVQPKKKARANL 308
>gi|354545252|emb|CCE41979.1| hypothetical protein CPAR2_805280 [Candida parapsilosis]
Length = 381
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 152/255 (59%), Gaps = 27/255 (10%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI- 96
++P V+GIDEA RGPVLGPMVYG AY KD + +L K G ADSK LT+ KR + I
Sbjct: 101 TKPVVIGIDEARRGPVLGPMVYGLAYSLKDFSSKLQKTYGFADSKQLTDDKRQQLFQMIE 160
Query: 97 ----CKENAWLGWMVEIISPNVICNSMLRRQK----YSLNEVSHDAAIGLIRKVIAAGVN 148
+ N +GW ++ I + MLR Y+LNE +HDA I LI++VI G+N
Sbjct: 161 DADQHELNKHIGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKQVINQGIN 220
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
V E+YVDTVGPP SY+ KL ++FP + ITV+ KA DS YP+V AS
Sbjct: 221 VTEIYVDTVGPPVSYQAKLKKLFPTIDITVSKKA---------------DSVYPIVSTAS 265
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSW 267
+ AKV+RD ++ + I ++ GSGYP DP T +L+ N+DPVFG+ +RFSW
Sbjct: 266 VVAKVTRDLNIRHYNTHLPI-LQGQKLGSGYPSDPNTSYWLNHNVDPVFGWCFGFIRFSW 324
Query: 268 STA-SKILKEKAVLV 281
TA ++K AV V
Sbjct: 325 QTAKDALMKHDAVEV 339
>gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila]
gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210]
Length = 284
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 166/270 (61%), Gaps = 16/270 (5%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
+T K+ V+GIDEAGRGPVLGPMVYG P EL K G DSK LTE+KR
Sbjct: 2 ATFENKKKNLDWVMGIDEAGRGPVLGPMVYGCCVWPIQYEPEL-KLEGFNDSKQLTEQKR 60
Query: 90 DDILDSICK-ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
D + + + +N L + V I+S + N ML + + SLNE+S +AA LI V++ G N
Sbjct: 61 DQLYARMEELKNDKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFN 120
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
V +V++DTVG E+Y+ KL + + TYP + ++SKAD+ +PVVGAAS
Sbjct: 121 VTQVFLDTVGKEETYQAKLYQDYK-----------YTYPQLKFTVSSKADAKFPVVGAAS 169
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
ICAKV+RD + + +E + + + A GSGYP DP TKK+L E DPVFGFP VR+SWS
Sbjct: 170 ICAKVTRDLQITNNDMREPLDL-SKATGSGYPSDPNTKKWLQEVFDPVFGFPSNVRYSWS 228
Query: 269 TASKILKEKAVLVEGDEIDDEEEEGENKKT 298
T I EK + V + D+ +++ +N+K+
Sbjct: 229 TVDNIFNEKKLQV--NFFDESDKKDKNQKS 256
>gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
Length = 375
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 156/265 (58%), Gaps = 29/265 (10%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
S IP K+ P VLG+DEAGRGPVLGPMVYG AY + +++L G ADSK L +
Sbjct: 74 SAIPREIKADITAPVVLGVDEAGRGPVLGPMVYGIAYSLESYSKDLQTKYGFADSKTLKD 133
Query: 87 KKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR----RQKYSLNEVSHDAAIGL 138
KR + I E+ L GW ++ I + ML+ + Y+LNE +HD I L
Sbjct: 134 DKRRQLFQMIENEDHELHGHVGWATTTMTAKDISSGMLQTVLGKGSYNLNEQAHDTTIQL 193
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
I++V+A GVNV +V+VDTVGPP SY+ KLS+IFP + ITVA K AD
Sbjct: 194 IKQVLAKGVNVTKVFVDTVGPPASYQAKLSKIFPTVAITVAKK---------------AD 238
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
S YP+V AS+ AKV+RD L + + I N+A GSGYP DP T K+L N+D VFG
Sbjct: 239 SIYPIVSTASVVAKVTRDLNLHFYNIHLPL-IHNHALGSGYPSDPNTSKWLHANVDRVFG 297
Query: 259 FP-QLVRFSWSTASKIL-KEKAVLV 281
+ LVRFSW T+ L K AV V
Sbjct: 298 WCFGLVRFSWQTSKDSLEKNNAVPV 322
>gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina
98AG31]
Length = 279
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 165/297 (55%), Gaps = 44/297 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVY ++CP D +EEL K+LG ADSK LT +KR ++ +SI + +
Sbjct: 1 MGIDEAGRGPVLGPMVYAASFCPVDFSEEL-KSLGFADSKTLTHQKRCNLFESIVQSSGK 59
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ W V+++SP+ I M RR Y+LN + DA + +I+ + ++ +YVDT+GPP++
Sbjct: 60 IQWNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKT 119
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
++ L + FP L TV SKA DS YP+V AASI AKV+RD+ +++W
Sbjct: 120 HQLNLQKAFPNLHFTVCSKA---------------DSIYPIVSAASIVAKVTRDAIVENW 164
Query: 223 TFQE----------------GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
F E I N GSGYP DP T +L + D VFG+PQL RFS
Sbjct: 165 MFVELSIGKRKRLEESQDDDDDSIWNLPTGSGYPADPNTTAWLKSHFDKVFGYPQLARFS 224
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKP-KADENVESPVVEERH 322
W+T +L ++ V N + I+ +FK ++ N P + +H
Sbjct: 225 WATVKTLLADRGAQVTW-----------NDEPAKIQKWFKEGQSGSNSNPPTLISKH 270
>gi|363753492|ref|XP_003646962.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890598|gb|AET40145.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
Length = 306
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/284 (44%), Positives = 166/284 (58%), Gaps = 37/284 (13%)
Query: 30 STIPESCKS----QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
S IPE+ K+ +LG+DEAGRGPVLGPMVYG AYC K + ++K+ G DSK LT
Sbjct: 21 SPIPEALKNVAQGDHIILGVDEAGRGPVLGPMVYGVAYCTKSYQDSVVKSYGFDDSKKLT 80
Query: 86 EKKRDDILDSICKENA-WLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRK 141
+ R + + I + +G+ I+P I MLR Q Y+LNE +HD IGLI+K
Sbjct: 81 DPIRRRLFEKIYNGDIDGIGYATTSITPFDISTGMLRYPPEQNYNLNEQAHDVTIGLIQK 140
Query: 142 VIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
V+ AGVN+ +YVDTVGPP +Y+ KL + FP TVA K ADS Y
Sbjct: 141 VLDAGVNISHIYVDTVGPPITYQDKLEKRFPVCKFTVAKK---------------ADSLY 185
Query: 202 PVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF-P 260
PVV AS+ AKV+RD L ++ I + GSGYPGDP T K+L+ENI P+FG+ P
Sbjct: 186 PVVSVASVIAKVTRDVWL-----EQLRTIPDEILGSGYPGDPKTVKWLNENIRPLFGWNP 240
Query: 261 QLVRFSWSTASKILKE--KAVLVEGDEIDDEEEEGENKKTRSIR 302
++VRFSW T IL+ A+ +E EEE K+T ++
Sbjct: 241 EIVRFSWQTCQNILETNPHAINIEW------EEESLKKRTYKLK 278
>gi|448537761|ref|XP_003871401.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis Co
90-125]
gi|380355758|emb|CCG25276.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis]
Length = 375
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 148/247 (59%), Gaps = 26/247 (10%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI- 96
++P V+GIDEAGRGPVLGPMVYG AY K+ + +L K G ADSK LT+ KR + I
Sbjct: 94 TKPVVIGIDEAGRGPVLGPMVYGLAYSLKEFSGKLQKTYGFADSKQLTDDKRQQLFQMIE 153
Query: 97 ----CKENAWLGWMVEIISPNVICNSMLRR----QKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ N +GW ++ I + MLR Y+LNE +HDA I LI+ VI GVN
Sbjct: 154 DVEQHELNKHIGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKSVIEQGVN 213
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
V E+YVDTVGPP SY+ KL + FP + ITVA K ADS YP+V AS
Sbjct: 214 VTEIYVDTVGPPISYQAKLKKHFPTIDITVAKK---------------ADSIYPIVSTAS 258
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSW 267
+ AKV+RD ++ + + ++++ GSGYP DP T +L+ N+DPVFG+ +RFSW
Sbjct: 259 VVAKVTRDLNIRHYNTHLPL-LQDHKLGSGYPSDPNTSYWLNHNVDPVFGWCFGFIRFSW 317
Query: 268 STASKIL 274
TA L
Sbjct: 318 QTAKDAL 324
>gi|255640332|gb|ACU20454.1| unknown [Glycine max]
Length = 219
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+ S I S+PCV+GIDEAGRGPVLGPMVYG YC + + + L L ADSK L E+
Sbjct: 1 MGSKILPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQ-SYLKTLSTLSFADSKTLKEE 59
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
KR+++ +++ K N +GW V++I P + ML++ K +LNE+SH +A+GLI +V+ GV
Sbjct: 60 KREELFETL-KLNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGV 118
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ EVY+DTVG Y+ KLS FP + VA KAD S YPVV A
Sbjct: 119 LLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKAD---------------SLYPVVSGA 163
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
SI AKV+RD A + W E + +GSGYPGDP TK +L ++ +FGFP LV
Sbjct: 164 SIVAKVTRDRASREWVLDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLV 219
>gi|395332583|gb|EJF64962.1| ribonuclease H2 subunit A [Dichomitus squalens LYAD-421 SS1]
Length = 304
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 160/275 (58%), Gaps = 25/275 (9%)
Query: 21 DNSRNLIISSTI--PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGC 78
D S LI S T P P LG+DEAGRGPVLGP+VYG AYCP E+L + LG
Sbjct: 18 DPSLPLIDSYTYHSPTPTAPGPYFLGVDEAGRGPVLGPLVYGVAYCPLAYKEQL-EQLGF 76
Query: 79 ADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL 138
DSK LT + R +L+++ + LGW V ++SP I ML+R +LN+ S +A + L
Sbjct: 77 TDSKTLTAQVRSSLLETLGSDPVNLGWSVRVLSPKDISAGMLKRPPTNLNQQSQNATVLL 136
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
IR+V+A GV + EVYVD +G SY+ LS +FP++ TV + KAD
Sbjct: 137 IREVLARGVQLSEVYVDALGRTTSYEAYLSSLFPDIAFTVQA---------------KAD 181
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQE---GIQIENNAWGSGYPGDPVTKKFLSENIDP 255
T+ +VGAAS+ AKV+RD+ + W ++E G + GSGYP DP T+ ++ +++P
Sbjct: 182 LTFKIVGAASVAAKVTRDAWIDGWVYEERAPGKWAQET--GSGYPSDPKTQAWIRSSLEP 239
Query: 256 VFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEE 290
FG+P RFSW+T L++ VE IDD +
Sbjct: 240 TFGYPSFARFSWATIKVALEKDGHAVE--WIDDGQ 272
>gi|390595476|gb|EIN04881.1| ribonuclease H2 subunit A [Punctularia strigosozonata HHB-11173
SS5]
Length = 341
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 154/286 (53%), Gaps = 55/286 (19%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P+ P ++G+DEAGRGPVLGP+VYG AYC + + L+ LG ADSK LT + R +
Sbjct: 29 PKPTAPGPYIMGVDEAGRGPVLGPLVYGVAYCTAEFRDSGLQELGFADSKTLTPEVRSQL 88
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L+++ L W V ++ P + MLR +LN S +A I LIR+V+ G+ + EV
Sbjct: 89 LETLSSNPEKLSWSVRVLCPQALSAGMLRIPPINLNRQSEEATILLIREVLQKGIELTEV 148
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +GPPE Y+K LS +FP + ITV +K ADS + +VGAAS+ AK
Sbjct: 149 YVDALGPPEKYEKYLSSVFPGISITVRNK---------------ADSLFKIVGAASVAAK 193
Query: 213 VSRDSALKSWTFQEG------------------------------------IQIENNAW- 235
V+RD L++W F+EG ++ + W
Sbjct: 194 VTRDECLENWLFEEGGEPRPIPRTVHEAPEETPLVEHPSDADQSGAQKDVDMESTQDPWG 253
Query: 236 ---GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
GSGYPGDP T ++ ++DPVFG+P + RFSWST L +KA
Sbjct: 254 SVLGSGYPGDPKTVAWMDCSLDPVFGYPSVARFSWSTIKNRLAQKA 299
>gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays]
gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays]
Length = 284
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 170/291 (58%), Gaps = 38/291 (13%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+++ +PE +PC++GIDEAGRGPVLGPMVYG YC N L L ADSK L E+
Sbjct: 1 MAALVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCAYSYNNTL-ATLKFADSKTLKEE 59
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQ-KYSLNEVSHDAAIGLIRKVIAAG 146
+R+++ +S+ K N+ + W V++I P I ML+++ K +LNE+SH++A+GL+RKV+ G
Sbjct: 60 QREELFESL-KVNSSIRWEVDVICPKDISAKMLKKKSKVNLNEISHNSAMGLVRKVLRMG 118
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
V + EVYVDTVG PE Y+ KL+E F + VA KAD S YPV+
Sbjct: 119 VLLAEVYVDTVGDPEKYRTKLTEKFIGIKFVVAKKAD---------------SLYPVISG 163
Query: 207 ASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRF 265
ASI AKV+RD AL++W F E + SGY GDP TK++L ++ VFG F V
Sbjct: 164 ASIVAKVTRDRALRNWVFDETALSLHMRTRSGYLGDPDTKRWLEDHKHLVFGFFKDAVDV 223
Query: 266 SWSTASKILKEKAVLVEGDEIDDEE-EEGENKKTRSIRNF----FKPKADE 311
+W E D++D EE + G+ K+ + + FK K +E
Sbjct: 224 TW--------------ESDKVDQEEIDSGDTKRQVKLLSLGFTGFKRKTEE 260
>gi|452986900|gb|EME86656.1| hypothetical protein MYCFIDRAFT_30484 [Pseudocercospora fijiensis
CIRAD86]
Length = 336
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/283 (42%), Positives = 158/283 (55%), Gaps = 26/283 (9%)
Query: 30 STIPESCK---SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALT 85
S IP + K + CVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT
Sbjct: 44 SAIPPTIKNDMTTECVLGVDEAGRGPVLGPMVYALYYLPTTLHRSLLADTHKFDDSKVLT 103
Query: 86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK-YSLNEVSHDAAIGLIR 140
R ++++ IC + L GW +S I ++MLR Y+LN + DA I LI+
Sbjct: 104 PAVRSELMEKICTSDTDLYRNCGWATRSLSAKDISSAMLRPHGVYNLNNQAMDATIDLIQ 163
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+V+ +GVN+REVY+DT+G PE Y+KKL +IFP L ITVA K ADS
Sbjct: 164 QVLDSGVNIREVYIDTIGKPEVYQKKLEKIFPALNITVAKK---------------ADSL 208
Query: 201 YPVVGAASICAKVSRDSALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
YP V AAS+CAKV+RD+AL+ F WGSGYP D +L N+DPVFG
Sbjct: 209 YPCVSAASVCAKVTRDAALEVLYTAFAGDGATTEMEWGSGYPSDARCSNWLKANMDPVFG 268
Query: 259 FPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSI 301
+ RFSW TA ++L+ K D D + + +N K S
Sbjct: 269 WGNECRFSWGTAKEMLEAKGAPCRVDWPDAGDTDTDNLKLTSF 311
>gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
Length = 345
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/277 (42%), Positives = 152/277 (54%), Gaps = 28/277 (10%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQP---CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE 71
S I+ + S IPE+ P VLG+DEAGRGPVLGPMVYG +YC +D +
Sbjct: 43 SSIKDKSTYASSTYHSEIPEAITEDPKGPVVLGVDEAGRGPVLGPMVYGISYCLRDYQDH 102
Query: 72 LLKNLGCADSKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQ---- 123
L K G ADSK L + R ++ I E L GW ++ I N MLR
Sbjct: 103 LKKKYGFADSKTLKDSTRQELFQLIDNEKHELHKNVGWATCTMTAKDISNGMLRSALGAG 162
Query: 124 KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKAD 183
Y+LNE +HD I LI+ V+ +GVNVRE++VDTVGPP SY+ KL + FP + ITV K
Sbjct: 163 SYNLNEQAHDTTIQLIKDVLLSGVNVREIFVDTVGPPVSYQAKLKKHFPSIDITVTKK-- 220
Query: 184 STYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDP 243
ADS YP+V AS+ AKV+RD L+ W + + GSGYP DP
Sbjct: 221 -------------ADSIYPIVSTASVVAKVTRDLNLQ-WYNENVENLIGKCLGSGYPSDP 266
Query: 244 VTKKFLSENIDPVFGFP-QLVRFSWSTASKILKEKAV 279
T K+L+ N+D VFG+ L+RFSW TA L+
Sbjct: 267 NTSKWLTSNVDKVFGWDFGLIRFSWQTAKDALERHGA 303
>gi|407917906|gb|EKG11206.1| Ribonuclease HII/HIII [Macrophomina phaseolina MS6]
Length = 332
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 169/306 (55%), Gaps = 37/306 (12%)
Query: 30 STIPESCK---SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALT 85
S IPE+ + CVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT
Sbjct: 41 SAIPEAIANDITTECVLGVDEAGRGPVLGPMVYALLYLPLSAHRSLLAETHHFDDSKVLT 100
Query: 86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQ-KYSLNEVSHDAAIGLIR 140
R D+++ +C L GW +++S I ML+ Y+LN + DA I LI+
Sbjct: 101 PAVRSDLMEKLCTPGTDLYKSCGWATKVMSALDISAGMLKANGTYNLNAQAMDATIELIK 160
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+V A GVNV+E+Y+DT+G P Y+KKL IFP + ITVA K ADS
Sbjct: 161 RVFAMGVNVKEIYIDTIGSPAVYQKKLERIFPTVQITVAKK---------------ADSL 205
Query: 201 YPVVGAASICAKVSRDSAL----KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPV 256
YP V AAS+CAKV+RD+AL +++ +G + + WGSGYP D +L N+DP+
Sbjct: 206 YPCVSAASVCAKVTRDAALDVCYETYASSDGETVAADGWGSGYPSDARCSGWLKRNMDPL 265
Query: 257 FGFPQLVRFSWSTASKILKEKAVLVEGD-EIDDEE--------EEGENKKTRSIRNFFKP 307
FG+ RFSW TA +L++K ++ + +DDE+ G++ + N+F
Sbjct: 266 FGWGPECRFSWGTAKDMLEDKKTGLKVEWPVDDEDGMNISAYFSGGQDDGGDELSNWFGK 325
Query: 308 KADENV 313
+ E V
Sbjct: 326 RVSEEV 331
>gi|331234733|ref|XP_003330025.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309015|gb|EFP85606.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 165/302 (54%), Gaps = 44/302 (14%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
E K ++GIDEAGRGPVLGPMVYG A+C + E+ L +LG ADSK LT ++R+++L
Sbjct: 61 EQLKRDNWIMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELL 120
Query: 94 DSICKE------NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
+ I N + W V++++P I M RR Y+LN + DA +I+ +
Sbjct: 121 EMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQY 180
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
N++ +YVDT+GPP++++ KL + FP + TV SKADS YP+VGAA
Sbjct: 181 NLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSI---------------YPIVGAA 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIE-----------NNAWGSGYPGDPVTKKFLSENIDPV 256
S+ AKV+RD+ + W E + + GSGYP DP T K+LSEN + +
Sbjct: 226 SVVAKVTRDAIVSHWIHPESTHPQKRKSSQEDEDATTSLGSGYPSDPNTVKWLSENFNTI 285
Query: 257 FGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESP 316
FGF QLVRFSW T +L ++ +DE SI+ +FKP + E+
Sbjct: 286 FGFGQLVRFSWGTVKTLLADRGPAFSW---NDEP---------SIQKWFKPVSQCQAETA 333
Query: 317 VV 318
V
Sbjct: 334 PV 335
>gi|358396936|gb|EHK46311.1| hypothetical protein TRIATDRAFT_6664, partial [Trichoderma
atroviride IMI 206040]
Length = 334
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 161/291 (55%), Gaps = 37/291 (12%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
+ PCVLG+DEAGRGPVLGPMVYG + P D ++ LL++ DSK L+ R +++++
Sbjct: 45 APPCVLGVDEAGRGPVLGPMVYGIFFLPADISDPLLRDTHHFDDSKVLSAAVRSQLMETL 104
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + L GW +S I +MLR Y+LN + DA + LIR V A GVN++E+
Sbjct: 105 CTPGSDLHESCGWATTALSARDIGANMLRPVPYNLNAQAMDATMDLIRAVYAKGVNIKEI 164
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVDT+GPP SY+ KL +FP +TV A KADS Y V AAS+CAK
Sbjct: 165 YVDTIGPPASYQAKLQRVFPTAKVTV---------------AKKADSLYACVSAASVCAK 209
Query: 213 VSRDSALKSWTFQ----------EGIQIENNA--WGSGYPGDPVTKKFLSENIDPVFGFP 260
VSRD+AL+ E + +E WGSGYP D T +L N+ P+FG+
Sbjct: 210 VSRDAALEKLFHARQVATAVANGEEVPVEEGTMEWGSGYPSDSKTSTWLRNNMHPLFGWG 269
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
RFSWSTA +L+ K G+ + E E+ +T + +FF +E
Sbjct: 270 PECRFSWSTAKDLLEGK-----GNGVKVEWPADEDGETSRLTDFFASGGEE 315
>gi|403176173|ref|XP_003334882.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172135|gb|EFP90463.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 151/262 (57%), Gaps = 32/262 (12%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
E K ++GIDEAGRGPVLGPMVYG A+C + E+ L +LG ADSK LT ++R+++L
Sbjct: 61 EQLKRDNWIMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELL 120
Query: 94 DSICKE------NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
+ I N + W V++++P I M RR Y+LN + DA +I+ +
Sbjct: 121 EMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQY 180
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
N++ +YVDT+GPP++++ KL + FP + TV SKADS YP+VGAA
Sbjct: 181 NLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSI---------------YPIVGAA 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIE-----------NNAWGSGYPGDPVTKKFLSENIDPV 256
S+ AKV+RD+ + W E + + GSGYP DP T K+LSEN + +
Sbjct: 226 SVVAKVTRDAIVSHWIHPESTHPQKRKSSQEDEDATTSLGSGYPSDPNTVKWLSENFNTI 285
Query: 257 FGFPQLVRFSWSTASKILKEKA 278
FGF QLVRFSW T +L ++
Sbjct: 286 FGFGQLVRFSWGTVKTLLADRG 307
>gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 156/267 (58%), Gaps = 28/267 (10%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---- 92
K+ VLG+DEAGRGPVLGPMVYG +YC + E+L G ADSK L E KR ++
Sbjct: 68 KTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMV 127
Query: 93 --LDSICKENAWLGWMVEIISPNVICNSMLRRQKYS----LNEVSHDAAIGLIRKVIAAG 146
+D EN +GW ++ I ++ML+ + + LNE +H+ I LIR+V+ +G
Sbjct: 128 ESMDHELNEN--VGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDSG 185
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
VNV++V+VDTVGPP +Y+KKL IFP L ITV KADS +P+V
Sbjct: 186 VNVKKVFVDTVGPPATYQKKLQGIFPTLEITV---------------TKKADSIFPIVST 230
Query: 207 ASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
AS+ AKV+RD + + Q + ++ GSGYP DP T +L N+DPVFG+ LVRFS
Sbjct: 231 ASVVAKVTRDLNIHYYHDQLAL-LQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFS 289
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEG 293
W TA LK + E D E++ G
Sbjct: 290 WQTAKDSLKNHHGVSVVYEADCEKDPG 316
>gi|393241381|gb|EJD48903.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 318
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 155/270 (57%), Gaps = 36/270 (13%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P + P LG+DEAGRGPV+GP+VYG A+CP E+L LG DSKAL+ + R +
Sbjct: 27 PLPTSAGPYHLGVDEAGRGPVMGPLVYGVAFCPAPYIEKL-NELGFDDSKALSAETRTHL 85
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
L S+C + A LGW V ++SP I MLRR +LN S +A I LIR+V+A G+ + V
Sbjct: 86 LGSLCGDPANLGWAVRVVSPQAISRGMLRRPPINLNIQSQEATILLIREVLAKGIQLSHV 145
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVD +G ++Y+ LS +FP + V K AD+T+ +VGAAS+ AK
Sbjct: 146 YVDALGSSKTYQDYLSSVFPGIAFDVRPK---------------ADATFKIVGAASVAAK 190
Query: 213 VSRDSALKSWTFQE-GIQIENN--------------AW-----GSGYPGDPVTKKFLSEN 252
V+RD+ +++W F E + + AW GSGYP DP T+ +L +
Sbjct: 191 VTRDAWIENWIFDELSKHVPGDVDADEKDIAAPMAPAWATAETGSGYPSDPKTQGWLRNS 250
Query: 253 IDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
++P FGFP +VRFSW+TA L++ V+
Sbjct: 251 LEPTFGFPSVVRFSWATAKVALEKDGHAVK 280
>gi|451994868|gb|EMD87337.1| hypothetical protein COCHEDRAFT_1197453 [Cochliobolus
heterostrophus C5]
Length = 343
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 166/286 (58%), Gaps = 36/286 (12%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
++ VLG+DEAGRGPVLGPMVY Y P + + LL + DSK L R D++ ++
Sbjct: 56 AREVVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLKADVRSDLMRTL 115
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + L GW ++S I ML+ Y+LN + DA I LI++V+ GVNV+E+
Sbjct: 116 CTQGTDLYKAGGWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLVKGVNVKEI 175
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+DT+G PE Y+KKL I+P + ITVA KA DS YPVV AAS+CAK
Sbjct: 176 YIDTIGKPEIYQKKLERIWPTISITVAKKA---------------DSLYPVVSAASVCAK 220
Query: 213 VSRDSAL-------KSWT---FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL 262
V+RD+AL S T ++G Q++ AWGSGYPGD T ++ +N+DP+FG+
Sbjct: 221 VTRDAALDVCYEPYHSRTDPEAEDGAQVQ-AAWGSGYPGDARTSAWMKQNMDPLFGWGNE 279
Query: 263 VRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPK 308
RFSW TA ++L+ K V D E++G + + + +FF K
Sbjct: 280 TRFSWGTAKEMLEGKKADVSIDW--PAEDDGNDMR---MTDFFNGK 320
>gi|345568395|gb|EGX51289.1| hypothetical protein AOL_s00054g359 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 163/278 (58%), Gaps = 30/278 (10%)
Query: 24 RNLIISSTIPESCKSQPC---VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
++ S IP ++ P LG+DEAGRGPVLGPMVYG AYC D + L K G D
Sbjct: 63 QSYTFHSEIPSVVRNDPTASITLGVDEAGRGPVLGPMVYGIAYCVSDYEKSLSKK-GFDD 121
Query: 81 SKALTEKKRDDILDSICKEN----AWLGWMVEIISPNVICNSMLRRQ---KYSLNEVSHD 133
SK LT + R D+L IC + A +GW V ++S I + MLR Y++N +HD
Sbjct: 122 SKKLTAEVRSDLLQEICTSDTELHANVGWAVRVMSARDITSGMLRPAGVGTYNINAQAHD 181
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+ LI +V+ GVNV+E++VDTVGP +Y+ KL FP +TV
Sbjct: 182 TTMNLIDEVLKKGVNVKEIFVDTVGPAVTYQAKLQRRFPTTKVTV--------------- 226
Query: 194 ASKADSTYPVVGAASICAKVSRDSALK-SWTFQE-GIQIENNAWGSGYPGDPVTKKFLSE 251
+ KADS YP V AS+CAKV+RD ALK S++ G ++ N GSGYP DP + +L
Sbjct: 227 SKKADSLYPSVSVASVCAKVTRDFALKESFSLASGGGEVPNT--GSGYPSDPKSIAYLKG 284
Query: 252 NIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDE 289
++D +FG+ RFSWSTA+++LK+ A +V+ + DDE
Sbjct: 285 SMDSLFGWGSETRFSWSTAAELLKKDAEVVDWPDNDDE 322
>gi|398406781|ref|XP_003854856.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
gi|339474740|gb|EGP89832.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
Length = 331
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 160/278 (57%), Gaps = 29/278 (10%)
Query: 13 VESCIRSNDNSRNLIISSTIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAYCPKDNN 69
V+S + S D+ + S IP + K+ CVLG+DEAGRGPVLGPMVYG Y P +
Sbjct: 26 VKSKVHSGDSYTH---HSAIPTTIKNDMTIECVLGVDEAGRGPVLGPMVYGLYYLPLAIH 82
Query: 70 EELLKNLG-CADSKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR-RQ 123
LL + DSK LT R ++++ IC + L GW ++S I ++M+R
Sbjct: 83 RSLLADTHRFDDSKVLTPAFRSELMERICTPDTDLHENSGWATRLMSAQDISSAMMRPNG 142
Query: 124 KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKAD 183
Y+LN + DA I LI++V+ +GVN+REVY+DT+G P +Y+KKL IFP L ITVA K
Sbjct: 143 TYNLNAQAMDATIDLIQEVLDSGVNIREVYIDTIGQPAAYQKKLERIFPALDITVAKK-- 200
Query: 184 STYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENN--AWGSGYPG 241
ADS YP V AAS+CAKV+RD+AL ++ AWGSGYP
Sbjct: 201 -------------ADSLYPCVSAASVCAKVTRDAALDVLYSSYASADDDGLIAWGSGYPS 247
Query: 242 DPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV 279
D +L N+DP+FG+ RFSW TA ++L+ K
Sbjct: 248 DARCSNWLKSNMDPLFGWGNECRFSWGTAKEMLEAKGA 285
>gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1]
Length = 427
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 155/258 (60%), Gaps = 30/258 (11%)
Query: 30 STIPESC---KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
S IP+S K++P VLG+DEAGRGPVLGPMVYG AY + + +L K G ADSK LT+
Sbjct: 137 SEIPQSVLQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTD 196
Query: 87 KKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR----RQKYSLNEVSHDAAIGL 138
KR+++ I + L GW ++ I + ML+ + Y+LNE +HD I L
Sbjct: 197 VKREELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINL 256
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
I++V+A GV + +++VDTVGPP +Y+ KL FPE+ +TV K AD
Sbjct: 257 IKQVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKK---------------AD 301
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQ-IENNAWGSGYPGDPVTKKFLSENIDPVF 257
S YP+V AS+ AKV+RD+ +K + E + ++ GSGYP DP T K+L+ N+DPVF
Sbjct: 302 SIYPIVSTASVVAKVTRDTNIK--FYNENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVF 359
Query: 258 GFPQ-LVRFSWSTASKIL 274
G+ +RFSW TA L
Sbjct: 360 GWCYGFIRFSWQTAKDSL 377
>gi|358336633|dbj|GAA55095.1| ribonuclease H2 subunit A [Clonorchis sinensis]
Length = 296
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 140/219 (63%), Gaps = 16/219 (7%)
Query: 79 ADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL 138
+DSK LTE +R+ +L + + WL V +ISP I +ML R K SLN +SHDAAIGL
Sbjct: 45 SDSKTLTEHQRESLLTRMLQHTDWLVGAVRVISPRFITENMLGRCKTSLNVISHDAAIGL 104
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
I+ + GVNV+EVYVDTVG E Y+ KL +FP+L I V SKAD
Sbjct: 105 IQAALDKGVNVKEVYVDTVGKAEHYEAKLQTLFPKLKICVESKAD--------------- 149
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVF 257
TYP+V AASI AKV+RD L+ W E G+ ++ GSGYPGDP+TK++L + +DPVF
Sbjct: 150 DTYPIVSAASIFAKVTRDRLLQLWPMNERGLFSDSVPVGSGYPGDPLTKRYLRQCVDPVF 209
Query: 258 GFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENK 296
GFP LVR SWSTA IL++ V + D+ +D+E+ + K
Sbjct: 210 GFPSLVRSSWSTAGAILEKSGVKITWDDDEDQEKAPDAK 248
>gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
Length = 261
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 161/289 (55%), Gaps = 47/289 (16%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL--LKNLGCADSKALTEKKRDDILDS 95
S PC +GIDEAGRGPVLGPMVYG AYC EEL LK G K R +
Sbjct: 7 STPCAMGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAGMRFQDIDRGKTRKAFRE- 65
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+ + K SLN++S+D+AIGLI+ V++ GV + EVYVD
Sbjct: 66 -------------------LEGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVD 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
TVG E Y+ +LSE+FP + TVA KADS +P+ V AASI AKV+R
Sbjct: 107 TVGDAEKYQARLSELFPHIKFTVAKKADSLFPI---------------VSAASIAAKVTR 151
Query: 216 DSALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
D ALKSW E G I N +GSGYPGDP TK +L +++D VFGFP LVRFSW+T ++
Sbjct: 152 DQALKSWVMDEAGCAISRN-FGSGYPGDPETKAWLEQHMDDVFGFPSLVRFSWATCKPLI 210
Query: 275 KEKAVLV--EGDEIDD-----EEEEGENKKTRSIRN-FFKPKADENVES 315
E V V E DE DD + + + + ++R+ FF+ + + V +
Sbjct: 211 AEGGVHVYWEADEDDDTALVKKSRSAQTESSGALRHSFFRSRQLQQVTT 259
>gi|451846155|gb|EMD59466.1| hypothetical protein COCSADRAFT_30912 [Cochliobolus sativus ND90Pr]
Length = 343
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 166/286 (58%), Gaps = 36/286 (12%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
++ VLG+DEAGRGPVLGPMVY Y P + + LL + DSK L R D++ ++
Sbjct: 56 AREVVLGVDEAGRGPVLGPMVYALFYLPIELHRSLLAEIHHFDDSKVLKANVRSDLMRTL 115
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + L GW ++S I ML+ Y+LN + DA I LI++V+A GVNV+E+
Sbjct: 116 CTQGTDLYEAGGWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLAKGVNVKEI 175
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+DT+G PE Y+KKL I+P + ITVA KA DS YPVV AAS+CAK
Sbjct: 176 YIDTIGKPEIYQKKLERIWPTISITVAKKA---------------DSLYPVVSAASVCAK 220
Query: 213 VSRDSAL-------KSWT---FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL 262
V+RD+AL S T ++G Q++ AWGSGYP D T ++ +N+DP+FG+
Sbjct: 221 VTRDAALDVCYEPYHSRTDPEAEDGAQVQ-AAWGSGYPSDARTSAWMKQNMDPLFGWGNE 279
Query: 263 VRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPK 308
RFSW TA ++L+ K V D E++G + + + +FF K
Sbjct: 280 TRFSWGTAKEMLEGKKADVSIDW--PAEDDGNDMR---MTDFFNGK 320
>gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 168/285 (58%), Gaps = 26/285 (9%)
Query: 22 NSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADS 81
NS ++ S+ P+ ++ LGIDEAGRGPV GPMVYG A ++ L K +G DS
Sbjct: 35 NSAKVVKKSSEPDDA-ARYYQLGIDEAGRGPVFGPMVYGAAISDIRKSDALGK-MGFNDS 92
Query: 82 KALTEKKRDDILDSI----CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIG 137
K LTE KR ++ + I K++ LG+ V +++ + I MLRR K +LN +SH+ AIG
Sbjct: 93 KQLTEAKRSELFEGIHNEALKDDGVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIG 152
Query: 138 LIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
LI ++ G+NV+EVYVDTVG PE Y+ KLS IF + + KA
Sbjct: 153 LIEHALSEGINVKEVYVDTVGDPERYQNKLSSIFKRRGVDTI------------VVCKKA 200
Query: 198 DSTYPVVGAASICAKVSRDSALKS----WTFQEGIQI--ENNAWGSGYPGDPVTKKFLSE 251
D+ YP+ AASICAKV RD ++ + EG+ + GSGYPGD T ++L +
Sbjct: 201 DAIYPICSAASICAKVIRDRLVEEEISYYPEGEGVATLCRSVKVGSGYPGDAQTVEWLEK 260
Query: 252 NIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENK 296
+DPVF FP+ +RFSWST +I K++A +E D DDE EG ++
Sbjct: 261 VVDPVFLFPRQIRFSWSTIEEIEKKRA--LEFDWHDDEYLEGNDE 303
>gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314]
gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans]
Length = 431
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 155/258 (60%), Gaps = 30/258 (11%)
Query: 30 STIPESC---KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
S IP+S K++P VLG+DEAGRGPVLGPMVYG AY + + +L K G ADSK LT+
Sbjct: 140 SEIPQSILQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTD 199
Query: 87 KKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR----RQKYSLNEVSHDAAIGL 138
KR+++ I + L GW ++ I + ML+ + Y+LNE +HD I L
Sbjct: 200 VKREELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINL 259
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
I++V+A GV + +++VDTVGPP +Y+ KL FPE+ +TV K AD
Sbjct: 260 IKQVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKK---------------AD 304
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQ-IENNAWGSGYPGDPVTKKFLSENIDPVF 257
S YP+V AS+ AKV+RD+ +K + E + ++ GSGYP DP T K+L+ N+DPVF
Sbjct: 305 SIYPIVSTASVVAKVTRDTNIK--FYNENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVF 362
Query: 258 GFPQ-LVRFSWSTASKIL 274
G+ +RFSW TA L
Sbjct: 363 GWCYGFIRFSWQTAKDSL 380
>gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 339
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 156/260 (60%), Gaps = 27/260 (10%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR----DDILDSICK 98
LGIDEAGRGPV GPMVYG A ++ L K +G DSK LTE KR +DI + K
Sbjct: 56 LGIDEAGRGPVFGPMVYGAAISDIRKSDALGK-MGFNDSKQLTEAKRSELFEDIHNEALK 114
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
++ LG+ V +++ + I MLRR K +LN +SH+ AIGLI ++ G+NV+EVYVDTVG
Sbjct: 115 DDGVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVG 174
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
PE Y+ KLS IF + + KAD+ YP+ AASICAKV RD
Sbjct: 175 DPERYQNKLSSIFKRRGVDT------------IVVCKKADAIYPICSAASICAKVIRDRL 222
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
+ +E I GSGYPGD T ++L + +DPVF FP+ +RFSWST +I K++A
Sbjct: 223 V-----EEDISYYPEV-GSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIEKKRA 276
Query: 279 VLVEGDEIDDEEEEG--ENK 296
+E D DDE EG ENK
Sbjct: 277 --LEFDWHDDEYLEGNDENK 294
>gi|384483740|gb|EIE75920.1| ribonuclease HII [Rhizopus delemar RA 99-880]
Length = 212
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 138/217 (63%), Gaps = 18/217 (8%)
Query: 57 MVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVIC 116
MVY +YCP ++EL ++LG DSK LTE+KRD + I W+GW V +ISP I
Sbjct: 1 MVYAVSYCPLSRHQEL-RDLGFDDSKKLTEEKRDQLAKLIETNKDWIGWAVYVISPRDIS 59
Query: 117 NSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELII 176
+MLRR Y+LNE++HDA I LI++V+ +N+ E+YVD VGP SYKKKLS FP + I
Sbjct: 60 TNMLRRPVYNLNEMAHDATIKLIKEVVEKKLNLEEIYVDPVGPSASYKKKLSSFFPGIAI 119
Query: 177 TVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQE-GIQ-IENNA 234
TV KA D+ YP+V AASICAKV+RD +++W + E G + +
Sbjct: 120 TVEPKA---------------DALYPIVSAASICAKVTRDQYVQNWVWTEPGFEGTVSKQ 164
Query: 235 WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
+GSGYP DP T K++ +N D FGFP ++RFSW T S
Sbjct: 165 FGSGYPSDPNTIKWMDKNEDDFFGFPSIMRFSWKTIS 201
>gi|225464176|ref|XP_002269852.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Vitis vinifera]
Length = 278
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 150/263 (57%), Gaps = 37/263 (14%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S+PC++GIDEAGRGPVLGPMVYG YC + + L L ADSK L E+KR+++ +++
Sbjct: 12 SEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHN-TLSTLNFADSKTLKEEKREELFENL- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K + +GW V++I P + ML+ KV+ GV + EVYVDTV
Sbjct: 70 KADESIGWAVDVIDPWELSAKMLK-------------------KVLNMGVLLTEVYVDTV 110
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G E Y+ KLSE FP V +A KADS YPVV ASI AKV+RD
Sbjct: 111 GDAEKYRIKLSERFP---------------AVKFVVAKKADSLYPVVSGASIVAKVTRDR 155
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
AL+ W E + + +GSGYPGDPVTK +L + VFGFP LVRFSW T + K+
Sbjct: 156 ALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDI 215
Query: 278 A-VLVEGDEIDDEEEEGENKKTR 299
VL E D+++++ N K +
Sbjct: 216 VEVLWEADKVEEDGSTNRNGKRQ 238
>gi|145329613|ref|NP_001077956.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 277
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 160/282 (56%), Gaps = 40/282 (14%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
SQPC++GIDEAGRGPVLGPMVYG YCP + + L +L ADSK L E+KR+++ +S+
Sbjct: 12 SQPCLMGIDEAGRGPVLGPMVYGCMYCPI-SYQSSLASLHFADSKTLKEEKREELYESL- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K + LGW V++I P + ML KV+ GV + E Y+DTV
Sbjct: 70 KLDKSLGWAVDVIDPRELSAKMLA-------------------KVLDMGVLLTEAYLDTV 110
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G P+ Y+ KLSE FP + V+ KADS +P+V ASI AKV+RD
Sbjct: 111 GDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSG---------------ASIVAKVTRDR 155
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK-E 276
ALK W +E + N +GSGYPGDP TK +L ++ VFGFP LVRFSW T + LK E
Sbjct: 156 ALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGE 215
Query: 277 KAVLVEGDEIDDEEEEGENKKTRSIRNF-FKP--KADENVES 315
V E DE ++ +K+ + +F FK K E +ES
Sbjct: 216 VEVAWEADENEESGNGSSSKRQAKLSSFGFKTCEKRSEEIES 257
>gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
Length = 345
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 148/256 (57%), Gaps = 31/256 (12%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
++ VLG+DEAGRGPVLGPMVY Y P + + LL + DSK LT + R D++ I
Sbjct: 56 AKEVVLGVDEAGRGPVLGPMVYALFYLPVELHHSLLADTHHFDDSKKLTPEVRSDLMRRI 115
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C L GW +S I ML Y+LN + DA I LI++V+A GVNV E+
Sbjct: 116 CTPGTDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEI 175
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+DT+G PE+Y++KL I+P + ITVA KA DS YPVV AAS+CAK
Sbjct: 176 YIDTIGRPETYQRKLERIWPTIRITVAKKA---------------DSLYPVVSAASVCAK 220
Query: 213 VSRDSAL-------KSWTFQEGIQIENN----AWGSGYPGDPVTKKFLSENIDPVFGFPQ 261
V+RD+A+ S + G EN AWGSGYP D T +L +N+DP+FG+
Sbjct: 221 VTRDAAINVCYAPYHSRALEAGTAAENAKVNVAWGSGYPSDSKTSTWLKQNMDPLFGWGN 280
Query: 262 LVRFSWSTASKILKEK 277
RFSW TA ++L+ K
Sbjct: 281 ECRFSWGTAKELLEGK 296
>gi|356536352|ref|XP_003536703.1| PREDICTED: ribonuclease H2 subunit A-like isoform 2 [Glycine max]
Length = 278
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 158/294 (53%), Gaps = 42/294 (14%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+ S I S+PCV+GIDEAGRGPVLGPMVYG YC + + + L L ADSK L E+
Sbjct: 1 MGSKILPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQ-SYLKTLSTLSFADSKTLKEE 59
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
KR+++ +++ K N +GW V++I P + ML+ KV+ GV
Sbjct: 60 KREELFETL-KLNDSIGWDVDVIDPRELSAKMLK-------------------KVLKMGV 99
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ EVY+DTVG Y+ KLS FP + VA KADS YP VV A
Sbjct: 100 LLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYP---------------VVSGA 144
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
SI AKV+RD AL+ W E + +GSGYPGDP TK +L ++ +FGFP LVRFSW
Sbjct: 145 SIVAKVTRDRALREWVLDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSW 204
Query: 268 STASKILKEKA-VLVEGDEIDDEEEEGENKKTR-----SIRNFFKPKADENVES 315
T + K+ A VL E D +D++ NK + S F K E +ES
Sbjct: 205 GTCNSYFKDAAEVLWESDNLDEDGGGSNNKNGKRQLKLSNVGFTTSKRSEEIES 258
>gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 393
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 182/318 (57%), Gaps = 30/318 (9%)
Query: 19 SNDNSRNLIISSTIPESCKS-QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG 77
SN + L++ S IP+SC++ Q V+GIDEAGRG +LGPMVYG A+ + + + +
Sbjct: 89 SNVHGAGLLLISDIPDSCRNKQGVVVGIDEAGRGSILGPMVYGAAFWNPCDEDRIPNDFN 148
Query: 78 CADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIG 137
DSK L+E KR +L I + +G+ V ++ + I +MLR + Y+LN++SHDAA G
Sbjct: 149 --DSKQLSEDKRAMLLHKIMYDTPEMGFAVRVLHASEISRNMLRTESYNLNQMSHDAAAG 206
Query: 138 LIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
+I ++ AGV + ++DTVG + YK++L + FP + TV SKA
Sbjct: 207 IIEHLLEAGVQIGACFIDTVGNADHYKRRLQQEFPGIDFTV---------------ESKA 251
Query: 198 DSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID-PV 256
D+ YP A S+ AK RD ++S+ + E + +GSGYP DPV K ++ N + V
Sbjct: 252 DAKYPPCSAGSVVAKNVRDRMMESFQYSEMSLKRDPKFGSGYPSDPVCKDWMENNQNCKV 311
Query: 257 FGFPQLVRFSWSTASKILKEKA--VLVEGDEIDDEEEEGE----NKKTRSIRNFFKPKAD 310
FG+P +VRFSW+ A K L+ A VL + D I DE+EEGE K+ ++ + F K D
Sbjct: 312 FGYPDVVRFSWNPAKKALERNAASVLFQADII-DEDEEGEYCIGKKQQQTQMSAFLGKQD 370
Query: 311 ENVESPVVEERHAFFKES 328
+ +R+ FF+ +
Sbjct: 371 ATRK----RKRYPFFERN 384
>gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 154/267 (57%), Gaps = 28/267 (10%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---- 92
K+ VLG+DEAGRGPVLGPMVYG +YC + E+L G ADSK L E KR ++
Sbjct: 68 KTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMV 127
Query: 93 --LDSICKENAWLGWMVEIISPNVICNSMLRRQKYS----LNEVSHDAAIGLIRKVIAAG 146
+D EN +GW ++ I ++ML+ + + LNE +H+ I LIR+V+ G
Sbjct: 128 ELMDHELNEN--VGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDLG 185
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
VNV++V+VDTVGPP +Y+KKL IFP L ITV KADS +P+V
Sbjct: 186 VNVKKVFVDTVGPPATYQKKLQGIFPTLEITV---------------TKKADSIFPIVST 230
Query: 207 ASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
AS+ AKV+RD + + Q + ++ GSGYP DP T +L N+DPVFG+ LVRF
Sbjct: 231 ASVVAKVTRDLNIHYYHDQLAL-LQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFL 289
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEG 293
W TA LK + E D E++ G
Sbjct: 290 WQTAKDSLKNHHGVSVVYEADCEKDPG 316
>gi|342319084|gb|EGU11035.1| Ribonuclease [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 145/253 (57%), Gaps = 25/253 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LG+DEAGRGP LGP VYG A+C + + E LK +G ADSK LT+ R+++ I +
Sbjct: 77 MLGVDEAGRGPALGPQVYGIAFC-QLSYESTLKEMGFADSKTLTDPLREELFKDILEHKD 135
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ + V ++SPN I MLR+ Y+LN SHD I LIR+V+ G +++ +VDTVGP
Sbjct: 136 DVKYAVTVMSPNDISMGMLRKVPYNLNAQSHDVTINLIREVVERGYKIKQCFVDTVGPAA 195
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ KLS FP + TV SK AD+ +P+V AASI AKV+RD L+
Sbjct: 196 DYQSKLSSFFPTINFTVTSK---------------ADALFPIVSAASIVAKVTRDRILEE 240
Query: 222 WTFQEGIQIEN---------NAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
W F E E +GSGYP DP T +L +N +P+FGFP + RFSW+
Sbjct: 241 WCFAEPGVGEKGEGEEGEAVRVFGSGYPSDPKTVAWLQDNFNPIFGFPNVARFSWAPVKN 300
Query: 273 ILKEKAVLVEGDE 285
L +K + D+
Sbjct: 301 ALLKKGAASKWDD 313
>gi|340521578|gb|EGR51812.1| predicted protein [Trichoderma reesei QM6a]
Length = 347
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 162/302 (53%), Gaps = 45/302 (14%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
+ PCVLG+DEAGRGPVLGPMVYG + P D ++ LL++ DSK L+ R ++ ++
Sbjct: 60 APPCVLGVDEAGRGPVLGPMVYGIFFLPADVSDALLRDTHHFDDSKVLSASVRSQLMHTL 119
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + L GW +S I +M+R Y+LN + DA I LIR V A GVNV+E+
Sbjct: 120 CTPGSDLHSSCGWATTALSARDIGANMMRPVSYNLNAQAMDATIDLIRAVYAKGVNVKEI 179
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVDT+GPP +Y+ KL +FP +TV A KADS Y V AAS+CAK
Sbjct: 180 YVDTIGPPATYQAKLQRVFPTAKVTV---------------AKKADSLYACVSAASVCAK 224
Query: 213 VSRDSALKSWTFQEGIQIENNA----------WGSGYPGDPVTKKFLSENIDPVFGFPQL 262
V+RD+AL+ T Q + A WGSGYP D T +L N+ P+FG+
Sbjct: 225 VTRDAALE--TLFHARQAASAAAAAAADGPMEWGSGYPSDAKTVAWLRNNMHPLFGWGPE 282
Query: 263 VRFSWSTASKILKEK--AVLVEGDEIDDEEEE-----------GENKKTRSIRNFFKPKA 309
RFSW TA +L+ K V +E DD+ E GE K+ + ++F A
Sbjct: 283 CRFSWGTAKDMLESKGNGVKIEWPADDDDGETSKLTDFFVSGGGEEKQGSELASWFGTPA 342
Query: 310 DE 311
+
Sbjct: 343 SQ 344
>gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500]
Length = 1257
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 152/268 (56%), Gaps = 26/268 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+GIDEAGRGPVLGP+VY Y P D N E ++ L DSK LTE +R+ + +I
Sbjct: 994 TMGIDEAGRGPVLGPLVYAACYVP-DCNLERMRKLRFDDSKKLTEAQRETLFKTILGNYE 1052
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
LG++ ++ P+++ ML +Q+ SL+ +SH +A LI++V+ G N+ +YVDTVGPP
Sbjct: 1053 LLGFVSDVNEPSMLSEKMLSKQQVSLDSISHGSAFNLIQQVLDKGYNIESLYVDTVGPPA 1112
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ K+ FP + V SK KADS YP+V AASICAKV RD +K+
Sbjct: 1113 KYEAKIRVAFPSIKNVVVSK--------------KADSLYPIVSAASICAKVIRDRIIKA 1158
Query: 222 WTFQ--------EGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
F+ + I N GSGYP DP TK +L N D VFG+P +VRFSW T S
Sbjct: 1159 TDFEKYGSNASGQNAPINTNI-GSGYPSDPATKSWLRNNRDKVFGYPDIVRFSWKTTSTA 1217
Query: 274 LKEKAVLVEGDEIDDEEEEGENKKTRSI 301
++ V+ ++ + K+ RS+
Sbjct: 1218 MQGDCYGVQW--VNQQSPYFSGKRKRSL 1243
>gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 343
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 166/285 (58%), Gaps = 36/285 (12%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTE 86
IS TI ++ +S PCVLGIDEAGRGPVLGPMVYG Y P D + LL + DSK LT
Sbjct: 48 ISPTIHDTVESTPCVLGIDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTP 107
Query: 87 KKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIR 140
R +++ + L G+ ++++S I + M+R Y+LN + DA + +IR
Sbjct: 108 AVRANLMHLLNTPGDSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIR 167
Query: 141 KVIA-AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
V+ GV+VREVY+DT+G P +Y++KL IFP L ITVA K ADS
Sbjct: 168 GVVEDRGVDVREVYIDTIGNPATYQQKLERIFPSLKITVAKK---------------ADS 212
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENN------AWGSGYPGDPVTKKFLSENI 253
YP V AAS+ AKV+RD AL+ ++ +Q E++ WGSGYP D +L N+
Sbjct: 213 LYPCVSAASVAAKVTRDVALEV-MYEAVLQAEHSLSPTSETWGSGYPSDSKCVGWLRRNM 271
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEID--DEEEEGENK 296
DPVFG+ RFSW TA ++L+ K G +D D+EEEG ++
Sbjct: 272 DPVFGWGNECRFSWGTAKEMLEMKG----GARVDWPDDEEEGAHR 312
>gi|358378191|gb|EHK15873.1| hypothetical protein TRIVIDRAFT_39184 [Trichoderma virens Gv29-8]
Length = 335
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 159/291 (54%), Gaps = 41/291 (14%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
PCVLG+DEAGRGPVLGPMVYG + P D ++ LL+ DSK L+ R +++++C
Sbjct: 48 PCVLGVDEAGRGPVLGPMVYGIFFLPADISDPLLRETHHFDDSKVLSATVRSQLMETLCT 107
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+ L GW +S I +M++ Y+LN + DA + LIR V A GVN++E+YV
Sbjct: 108 PGSDLHESCGWATTALSARDIGANMMKPVSYNLNAQAMDATMDLIRAVYAKGVNIKEIYV 167
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DT+GPP +Y+ KL +FP +TV A KADS Y V AAS+CAKV+
Sbjct: 168 DTIGPPATYQAKLQRVFPTAKVTV---------------AKKADSLYACVSAASVCAKVT 212
Query: 215 RDSALKSWTFQEGIQIENNA--------------WGSGYPGDPVTKKFLSENIDPVFGFP 260
RD+AL+ T Q+ A WGSGYP D T +L N+ P+FG+
Sbjct: 213 RDAALE--TLFHARQVATAATNGEEAPSEDIPMEWGSGYPSDSKTVGWLRNNMHPLFGWG 270
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
RFSW TA +L+ K G+ I E ++ +T + +FF ++E
Sbjct: 271 SECRFSWGTAKDMLESK-----GNGIKIEWPADDDGETSRLTDFFVSGSEE 316
>gi|452846013|gb|EME47946.1| hypothetical protein DOTSEDRAFT_167397 [Dothistroma septosporum
NZE10]
Length = 332
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 170/297 (57%), Gaps = 27/297 (9%)
Query: 2 EEIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGT 61
E++ S++ + + +R + + + I TI + ++ CVLG+DEAGRGPVLGPMVY
Sbjct: 18 EDVFIPSSIAKPQ-VLRGDSYTHHSPIPQTIQDDMTTE-CVLGVDEAGRGPVLGPMVYAL 75
Query: 62 AYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICKENAWL----GWMVEIISPNVIC 116
Y P + +LL + DSK LT R ++++ I L GW +S I
Sbjct: 76 YYLPLTMHRKLLADTHKFDDSKVLTPAVRSELMEKISTPGTDLYTHGGWAARHMSARDIS 135
Query: 117 NSMLRRQ-KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELI 175
++M+R Y+LNE + DA I LI++V+ +GVN+REVY+DT+G PE+Y++KL IFP L
Sbjct: 136 SAMMRPHGMYNLNEQAMDATIDLIQEVLNSGVNIREVYIDTIGRPETYQRKLERIFPALS 195
Query: 176 ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENN-- 233
ITVA K ADS YP V AAS+CAKV+RD+AL + ++
Sbjct: 196 ITVAKK---------------ADSLYPCVSAASVCAKVTRDAALDVLYTSYATEEDSGEV 240
Query: 234 AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV--LVEGDEIDD 288
AWGSGYP D +L N++P++G+ RFSW TA ++L+ K V+ E DD
Sbjct: 241 AWGSGYPSDVRCSNWLKANMNPMYGWGNECRFSWGTAKEMLEAKGAPCRVDWPEPDD 297
>gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
Length = 361
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 161/284 (56%), Gaps = 48/284 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVYG AYC EEL +L AD +K L+
Sbjct: 1 MGIDEAGRGPVLGPMVYGCAYCAVAYKEEL-ASLKFADIDRGKTRKAFRELE-------- 51
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
G ++ + K SLN++S+D+AIGLI+ V++ GV + EVYVDTVG E
Sbjct: 52 -GGPIDGV-------------KRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEK 97
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
Y+ +LSE+FP + TVA KADS +P+ V AASI AKV+RD ALKSW
Sbjct: 98 YQARLSELFPHIKFTVAKKADSLFPI---------------VSAASIAAKVTRDQALKSW 142
Query: 223 TFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLV 281
E G I N +GSGYPGDP TK +L +++D VFGFP LVRFSW+T ++ E V V
Sbjct: 143 VMDEAGCTISRN-FGSGYPGDPDTKAWLEQHMDDVFGFPSLVRFSWATCKPLIAEGGVHV 201
Query: 282 --EGDEIDD-----EEEEGENKKTRSIRN-FFKPKADENVESPV 317
E DE DD + + + + ++R+ FF+P V P
Sbjct: 202 YWEADEDDDTALVKKSRSAQTESSGALRHSFFRPPTAAVVTVPT 245
>gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
Length = 309
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 146/255 (57%), Gaps = 27/255 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK-NLGCADSKALTEKKRDDILDSICKEN 100
+LG+DEAGRGPVLGPMVYG +YC K +E+LK N G DSK L++ +R + I EN
Sbjct: 43 ILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPNYGFDDSKKLSDLERRRLFSKIYGEN 102
Query: 101 ------AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVRE 151
A +G+ V I+P I + MLR Y+LNE +HD I LI V+ GV +
Sbjct: 103 GEVAEIANVGYAVTAITPADISSGMLRYPANANYNLNEQAHDVTIALIEGVLQRGVKLHH 162
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VYVDTVGPP SY+KKL + FP + TV A KADS Y VV ASI A
Sbjct: 163 VYVDTVGPPASYQKKLEQKFPHIKFTV---------------AKKADSLYCVVSVASIVA 207
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF-PQLVRFSWSTA 270
KV+RD L+ W Q+ E GSGYP D T +L + P+ G+ P LVRFSW T+
Sbjct: 208 KVTRDILLEQWA-QQVSPPEAGPLGSGYPADAKTTAWLRNTMKPLMGWDPHLVRFSWQTS 266
Query: 271 SKILKEKAVLVEGDE 285
+L K + +E +E
Sbjct: 267 ETLLDNKGIQIEWEE 281
>gi|344299617|gb|EGW29970.1| hypothetical protein SPAPADRAFT_63592 [Spathaspora passalidarum
NRRL Y-27907]
Length = 355
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 171/298 (57%), Gaps = 38/298 (12%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
I S I K++ LG+DEAGRGPVLGPMVYG AYC K+ +L K G ADSK L ++
Sbjct: 68 IPSLIASDLKAE-VTLGVDEAGRGPVLGPMVYGIAYCLKEYQPKL-KEYGFADSKVLKDE 125
Query: 88 KRDDILDSI------CKENAWLGWMVEIISPNVICNSMLRRQK----YSLNEVSHDAAIG 137
KR + + EN +GW ++ I + ML+ Y+LNE +HD I
Sbjct: 126 KRQSLFKQMEDLSHELYEN--VGWATTTMTAKDISSGMLQSTAGTGAYNLNEQAHDTTIE 183
Query: 138 LIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
LI++V+A GVNV EV+VDTVGPP +Y+ KL +FP + I V K A
Sbjct: 184 LIKQVLAKGVNVTEVFVDTVGPPITYQNKLKSLFPGIDIVVTKK---------------A 228
Query: 198 DSTYPVVGAASICAKVSRDSALKSWTFQEGIQI-ENNAWGSGYPGDPVTKKFLSENIDPV 256
DS YP+V AS+ AKV+RD L + E + I +N+A GSGYP DP T K+L+ N+DPV
Sbjct: 229 DSIYPIVSTASVVAKVTRD--LNIQYYNESLPILQNHALGSGYPSDPNTSKWLNSNVDPV 286
Query: 257 FGFP-QLVRFSWSTA-SKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADEN 312
FG+ +R+SW TA ++K AV V I +++ + + + + + F+ K D++
Sbjct: 287 FGWCFGFIRYSWQTAKDSLVKNNAVEV----IYEDQVKKRDNGYQDVGDMFESKTDKS 340
>gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
Length = 366
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 155/258 (60%), Gaps = 30/258 (11%)
Query: 30 STIPESC---KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
S IP++ +++P VLG+DEAGRGPVLG MVYG AY + + +L K G ADSK LT+
Sbjct: 76 SEIPQNVLQNETEPIVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLTD 135
Query: 87 KKRDDILDSI----CKENAWLGWMVEIISPNVICNSMLR----RQKYSLNEVSHDAAIGL 138
KR+++ I + + +GW ++ I + ML+ + Y+LNE +HD I L
Sbjct: 136 VKREELFKQIEDPEHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIDL 195
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
I++V+A GV + +++VDTVGPP +Y+ KL FPE+ +TV K AD
Sbjct: 196 IKQVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKK---------------AD 240
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQ-IENNAWGSGYPGDPVTKKFLSENIDPVF 257
S YP+V AS+ AKV+RD+ +K + E + ++ GSGYP DP T K+L+ N+DPVF
Sbjct: 241 SIYPIVSTASVVAKVTRDTNIK--FYNENLPLLQGQKLGSGYPSDPNTNKWLNSNVDPVF 298
Query: 258 GFPQ-LVRFSWSTASKIL 274
G+ +RFSW TA L
Sbjct: 299 GWCYGFIRFSWQTAKDSL 316
>gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
Length = 356
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 170/309 (55%), Gaps = 50/309 (16%)
Query: 12 EVESCIRSNDNSRNL--------------IISST----IPESC---KSQPCVLGIDEAGR 50
E E I SN SR+ I+ST +PES S+P VLG+DEAGR
Sbjct: 28 ESEELISSNKRSRDTWAPVSVTTINDPFKFITSTYISEVPESIVANDSEPIVLGVDEAGR 87
Query: 51 GPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN-------AWL 103
GPVLGPMVYG AY + ++ L K G ADSK LTE KR+++ I + + +
Sbjct: 88 GPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKREELFRLIEESSDNEKGLSKVI 147
Query: 104 GWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
GW ++ I + ML+ + Y+LN +HD I LI++V+ GV + +++VDTVGPP
Sbjct: 148 GWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIKQVLKKGVKISKIFVDTVGPP 207
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+Y+ KL IFP++ ITVA KA DS YP+V AAS+ AKV+RD +
Sbjct: 208 ATYQAKLKGIFPDIEITVAKKA---------------DSIYPIVSAASVVAKVTRDKNIA 252
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTASKIL--KEK 277
+ I ++ + GSGYP DP TK +L+ N+D +FG+ RFSW+TA L
Sbjct: 253 YYNNHLDI-LKGHKLGSGYPSDPNTKTWLNSNVDSIFGWCFGFARFSWATAKDALINNGA 311
Query: 278 AVLVEGDEI 286
A +V D++
Sbjct: 312 ATVVYADDV 320
>gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
Length = 414
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 161/283 (56%), Gaps = 32/283 (11%)
Query: 15 SCIRSNDNSRNLIISSTIPESC---KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE 71
+ I + N + SS +P+S +P LG+DEAGRGPVLGPMVYG AY +
Sbjct: 105 TSIENFSNFKTTTYSSKVPQSILENPEEPVELGVDEAGRGPVLGPMVYGIAYSLLSFLKC 164
Query: 72 LLKNLGCADSKALTEKKRD---DILDSICKENAW---LGWMVEIISPNVICNSMLR---- 121
L K G ADSK LT KR+ +++ EN +GW ++ I MLR
Sbjct: 165 LQKQYGFADSKQLTGDKRELLFKMMEDTHIENGLSKHVGWATTTMTAKDISLGMLRLVSN 224
Query: 122 -RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVAS 180
+ Y+LNE +HDA I LIR +++ GVN+ +YVDTVGPP +Y+ KL ++FP + ITV
Sbjct: 225 GKGVYNLNEQAHDATIELIRLILSKGVNITAIYVDTVGPPATYQAKLKKLFPTIDITVTK 284
Query: 181 KADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYP 240
KA DS YP+V AS+ AKV+RD LK + Q ++N+A GSGYP
Sbjct: 285 KA---------------DSIYPIVSTASVVAKVTRDLNLK-YANQHINLLKNHALGSGYP 328
Query: 241 GDPVTKKFLSENIDPVFGFP-QLVRFSWSTASK-ILKEKAVLV 281
DP T +L+ N+DP+FG+ +RFSW TA ++K AV V
Sbjct: 329 SDPNTSFWLNHNVDPIFGWCFGFIRFSWQTAKDCLIKHNAVPV 371
>gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 148/262 (56%), Gaps = 32/262 (12%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
S VLG+DEAGRGPVLGPMVY Y P + + LL + DSK LT + R +++ +
Sbjct: 56 SGEVVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLTPEVRSNLMRKL 115
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + + L GW ++S I ML Y+LN + DA I LI+ V+A GVNV E+
Sbjct: 116 CTKGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEI 175
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+DT+G PE Y++KL I+P + ITVA KA DS YPVV AAS+CAK
Sbjct: 176 YIDTIGKPEIYQRKLERIWPTIRITVAKKA---------------DSLYPVVSAASVCAK 220
Query: 213 VSRDSALKSWTFQEGIQIENN----------AWGSGYPGDPVTKKFLSENIDPVFGFPQL 262
V+RD+AL E NN AWGSGYP D T +L +N+DP+FG+
Sbjct: 221 VTRDAALD--VCYEPYHNRNNEAERGTDVKVAWGSGYPSDARTTTWLKQNMDPLFGWGSE 278
Query: 263 VRFSWSTASKILKEKAVLVEGD 284
RFSW TA ++L+ K V D
Sbjct: 279 TRFSWGTAKELLEGKKADVSID 300
>gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
Length = 332
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 147/261 (56%), Gaps = 31/261 (11%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
S VLG+DEAGRGPVLGPMVY Y P + + LL + DSK LT + R +++ +
Sbjct: 47 SGEVVLGVDEAGRGPVLGPMVYALFYLPTELHHSLLADTHHFDDSKVLTPEVRSNLMRKL 106
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + + L GW ++S I ML Y+LN + DA I LI+ V+A GVNV E+
Sbjct: 107 CTKGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEI 166
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+DT+G PE Y++KL I+P + ITVA KA DS YPVV AAS+CAK
Sbjct: 167 YIDTIGKPEIYQRKLERIWPTIRITVAKKA---------------DSLYPVVSAASVCAK 211
Query: 213 VSRDSALKSWTFQEGIQIENNA---------WGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
V+RD+AL E N A WGSGYP D T +L +N+DP+FG+
Sbjct: 212 VTRDAALD--VCYEPYHHRNEAERGADVKVVWGSGYPSDARTTTWLKQNMDPLFGWGSET 269
Query: 264 RFSWSTASKILKEKAVLVEGD 284
RFSW TA ++L+ K V D
Sbjct: 270 RFSWGTAKELLEGKKADVSVD 290
>gi|344234362|gb|EGV66232.1| ribonuclease HII [Candida tenuis ATCC 10573]
gi|344234363|gb|EGV66233.1| hypothetical protein CANTEDRAFT_112777 [Candida tenuis ATCC 10573]
Length = 337
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 161/271 (59%), Gaps = 24/271 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
+DN +++ SS IP+ P +LG+DEAGRGP+LGPMVY AYC K++ E LK G
Sbjct: 60 SDNFNSIMYSSHIPK-VGDTPLILGVDEAGRGPILGPMVYTVAYC-KEDYESDLKRYGFD 117
Query: 80 DSKALTEKKRDDILDSICKE----NAWLGWMVEIISPNVICNSMLRRQK--YSLNEVSHD 133
DSK L + R + I ++ N +G++ I+S I + MLR + Y+LNE +HD
Sbjct: 118 DSKVLKHEFRLGLYKLIDQKDHELNQKIGYLSSILSAKDISSGMLRVHQGNYNLNEQAHD 177
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
A I LI+ ++ VN++ VYVDTVGPPE Y+ KLS IF S+Y + +
Sbjct: 178 ATINLIKALVEKKVNIKRVYVDTVGPPEKYQAKLSNIF------------SSYN-IKFTV 224
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
KADS YP+V ASI AKV+RD L + Q+ + GSGYP DP T ++L E I
Sbjct: 225 TKKADSLYPIVSCASIIAKVTRDLYLHYYN-QKDPLLRGTEMGSGYPSDPRTSRWLKEQI 283
Query: 254 DPVFGFP-QLVRFSWSTASKIL-KEKAVLVE 282
+PVFG+ ++R+SW TA L K KAV V+
Sbjct: 284 NPVFGWHFGVLRYSWQTAKDSLDKNKAVEVD 314
>gi|440638129|gb|ELR08048.1| hypothetical protein GMDG_02886 [Geomyces destructans 20631-21]
Length = 397
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 158/320 (49%), Gaps = 56/320 (17%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKE 99
C LG+DEAGRGPVLGPMVYG Y P + LL K DSK LT R +++++C
Sbjct: 90 CALGVDEAGRGPVLGPMVYGAFYLPVPLSTPLLSKTHHFDDSKVLTAGFRAQLMETLCTP 149
Query: 100 NAW---------------LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA 144
GW V ++S I +M+R Y+LNE + DA I LI+ V
Sbjct: 150 TVPPAPETSPDPSSLYDNCGWAVSVLSARAISANMMRPAMYNLNEQAMDATIHLIKTVYE 209
Query: 145 AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVV 204
GVNVRE+Y+DT+G P Y+KKL IFP ITVA K ADS YP V
Sbjct: 210 MGVNVREIYIDTIGQPGPYQKKLERIFPTASITVAKK---------------ADSLYPCV 254
Query: 205 GAASICAKVSRDSALKSWTFQEGIQIENNA-------------------WGSGYPGDPVT 245
AAS+CAKV+RD AL+ G E+ A WGSGYP D
Sbjct: 255 SAASVCAKVTRDRALEVLYEAYGGSNEDAAGKEDVTMGDSEDEPAPEADWGSGYPSDARC 314
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
+L NIDPVFG+ RFSWST +L++ + +D EE E+ T + ++F
Sbjct: 315 STWLKRNIDPVFGWGPECRFSWSTTKDLLEDNKAMAA--HVDWPAEEDED--THRVTDYF 370
Query: 306 KPKADENVESPVVEERHAFF 325
AD E +E +F
Sbjct: 371 --SADSGKEQKADDELGNWF 388
>gi|449300186|gb|EMC96198.1| hypothetical protein BAUCODRAFT_122230 [Baudoinia compniacensis
UAMH 10762]
Length = 335
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 148/261 (56%), Gaps = 26/261 (9%)
Query: 30 STIPESCK---SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALT 85
ST+P + + S CVLG+DEAGRGPVLGPMVY Y P + LL + DSKALT
Sbjct: 44 STVPAALRADMSTACVLGVDEAGRGPVLGPMVYALYYLPLPMHRLLLAETHHFDDSKALT 103
Query: 86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQ-KYSLNEVSHDAAIGLIR 140
R ++++ +C L GW +S I + L+ Y+LN + DA + LI+
Sbjct: 104 PAVRSELMEKVCSPQTDLFQHCGWATRSMSARDISAAQLKANGAYNLNAQAMDATVDLIQ 163
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+V+ GVNV EVY+DT+GPP +Y+K+L IFP L ITVA K ADS
Sbjct: 164 QVLDLGVNVCEVYIDTIGPPATYQKRLERIFPSLSITVAKK---------------ADSL 208
Query: 201 YPVVGAASICAKVSRDSALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
YP V AAS+CAKV+RD++L T+ E AWGSGYP D +L N+ P+FG
Sbjct: 209 YPCVSAASVCAKVTRDASLDVLYSTYAEIADCGEMAWGSGYPSDGRCTTWLKGNMHPLFG 268
Query: 259 FPQLVRFSWSTASKILKEKAV 279
+ RFSW TA ++L+ K
Sbjct: 269 WGHECRFSWGTAKEMLETKGA 289
>gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980]
gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 361
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 164/289 (56%), Gaps = 35/289 (12%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICKE 99
C LGIDEAGRGPVLGPMVYG Y P ++ LL+N DSK LT R +++ +C
Sbjct: 67 CALGIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMKKLCTP 126
Query: 100 NAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
++ L GW V+++S I +M++ Y+LN + D+ I LI+ V+ GVNV+E+Y+D
Sbjct: 127 DSDLYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYID 186
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+G +Y+KKL IFP ITVA K ADS YP V AAS+CAKV+R
Sbjct: 187 ALGNTVTYQKKLERIFPTAQITVAKK---------------ADSLYPCVSAASVCAKVTR 231
Query: 216 DSAL----KSWTFQEGIQ------IENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRF 265
D+AL +S+ ++G Q + ++WGSGYP D +L N+DP+FG+ RF
Sbjct: 232 DAALETLYESYVSKDGDQEMGGTEVAEDSWGSGYPSDARATAWLKRNMDPIFGWGSECRF 291
Query: 266 SWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVE 314
SW T +L K V + D +E++E T + +FF D++ +
Sbjct: 292 SWGTTKDMLDLKGVAAKVDWPIEEDDE-----TSRLTDFFSADKDKDTD 335
>gi|402224753|gb|EJU04815.1| ribonuclease H-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 312
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 135/227 (59%), Gaps = 17/227 (7%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGP LGPMVY AYCP D E L LG DSK LT R +L ++
Sbjct: 51 MVGIDEAGRGPALGPMVYAAAYCPVD--WEQLSELGFNDSKVLTADTRTKLLGTLSAHPT 108
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
LGW V++++P+ I ML R +LN S +A + ++R ++ AG+N+ +++VD +GP
Sbjct: 109 HLGWSVQVLAPSSISQGMLARPPTNLNVQSQNATVHILRSLLQAGLNITQIFVDALGPSV 168
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+K L +FP +TV KADS Y +VGAAS+ AK RD+ ++S
Sbjct: 169 PYQKYLQSLFPSAEVTVCPKADSIY---------------EIVGAASVAAKTCRDAWMES 213
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
W ++E GSGYP DP T+ +++ ++ FG+P+LVRFSW+
Sbjct: 214 WVWEEEGMPPGQELGSGYPSDPKTQAWIANRLEKTFGYPRLVRFSWA 260
>gi|406864455|gb|EKD17500.1| ribonuclease HII [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 359
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 171/308 (55%), Gaps = 47/308 (15%)
Query: 34 ESCKSQP---CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKR 89
+S K+ P C LG+DEAGRGPVLGPMVYG Y P ++ LL++ DSK LT R
Sbjct: 57 DSSKADPGPACALGVDEAGRGPVLGPMVYGLFYLPIPLSDPLLRDTHHFDDSKVLTPTVR 116
Query: 90 DDILDSICKENAWL----GWMVEIISPNVICNSMLR-RQKYSLNEVSHDAAIGLIRKVIA 144
++++ +C + L GW VE++S I +M++ Y+LN + DA I LI+ V
Sbjct: 117 SNLMEKLCSPDTDLHSQCGWAVEVMSARDIGANMMKPAATYNLNAQAMDATIMLIKGVYE 176
Query: 145 AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVV 204
GVNV+E+++DT+G PE+Y++KL IFP +TVA K ADS YP V
Sbjct: 177 RGVNVKEIFIDTIGNPETYQRKLQRIFPTAKVTVAKK---------------ADSLYPCV 221
Query: 205 GAASICAKVSRDSAL---------KSWTFQEGIQIEN---------NAWGSGYPGDPVTK 246
AAS+CAKV+RD+A+ K+ +E +++E ++WGSGYP D
Sbjct: 222 SAASVCAKVTRDAAMEVLYDSYLSKTSDGEEDVEMEGTKMAKAAEESSWGSGYPSDARCT 281
Query: 247 KFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFK 306
+L ++DPVFG+ RFSW TA +L K + + +E++E T + ++F
Sbjct: 282 SWLKRSMDPVFGWGPECRFSWGTAKDMLDVKGAAAKVEWPVEEDDE-----TSRLTDYFS 336
Query: 307 PKADENVE 314
D+ V+
Sbjct: 337 AGKDKEVD 344
>gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus
musculus]
Length = 799
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 144/247 (58%), Gaps = 38/247 (15%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCP--KDNNEELLKNLG 77
DN +SS +P C +PCVLG+DEAGR PVLGPMVY YCP + + E LK
Sbjct: 8 RDNMNRCCLSSPVPSVCLKEPCVLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALK--- 64
Query: 78 CADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIG 137
ADSK LTE +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A
Sbjct: 65 VADSKTLTENERERLFTKMEEDGDFVGWSLDVLSPNLISISMLGRVKYNLNSLSHDTAAE 124
Query: 138 LIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
LI N R++ P IIT S + T + +KA
Sbjct: 125 LIW-------NARDI-------------------PGSIITALSGIEVT-------VKAKA 151
Query: 198 DSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVF 257
DS +PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L ++DPVF
Sbjct: 152 DSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDYGSGYPSDPKTKAWLRRHVDPVF 211
Query: 258 GFPQLVR 264
GFPQ +
Sbjct: 212 GFPQFAQ 218
>gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
Length = 1493
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 159/275 (57%), Gaps = 31/275 (11%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICKENA 101
LGIDEAGRGPVLGPMVYG Y P ++ LL+N DSK LT R ++++ +C +
Sbjct: 69 LGIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGS 128
Query: 102 WL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
L GW V+++S I +M++ Y+LN + D+ I LI+ V+ GVNV+E+Y+D +
Sbjct: 129 DLYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDAL 188
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G +Y+KKL IFP ITVA K ADS YP V AAS+CAKV+RD+
Sbjct: 189 GNTVTYQKKLERIFPTAQITVAKK---------------ADSLYPCVSAASVCAKVTRDA 233
Query: 218 AL----KSWTFQEGIQ----IENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
AL +S+ ++G Q E ++WGSGYP D +L N+DP+FG+ RFSW T
Sbjct: 234 ALESLYESYMNKDGDQKMGGTEEDSWGSGYPSDARATTWLKRNMDPIFGWGSECRFSWGT 293
Query: 270 ASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNF 304
+L K + + D EE+ E +KT IRN
Sbjct: 294 TKDMLDLKGIAAKVDW--PIEEDDETRKT-GIRNL 325
>gi|353241100|emb|CCA72936.1| related to 35 kDa ribonuclease H [Piriformospora indica DSM 11827]
Length = 379
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 145/254 (57%), Gaps = 33/254 (12%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P+ P +G+DEAGRGP LGP+VYG A+CP + L +G DSK LT + R ++
Sbjct: 89 PKPTAVGPYAVGVDEAGRGPALGPLVYGMAFCPVAFVDGSLAEMGFDDSKTLTHETRVEL 148
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAA--GVNVR 150
L ++ ++ +GW V +ISP + + MLRR +LN S +A I L++ +++ +++
Sbjct: 149 LKALSEDTTNMGWAVSVISPQAVSSGMLRRPPVNLNTQSQNATIALLQSLLSEPYALDIS 208
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
EVYVD +GP E Y+ L F L ITV +K ADS Y +VGAAS+
Sbjct: 209 EVYVDALGPAEKYQAYLQSRFRTLKITVRNK---------------ADSLYKIVGAASVA 253
Query: 211 AKVSRDSALKSWTFQEGIQIENNA----------W------GSGYPGDPVTKKFLSENID 254
AKV+RD ++ W ++E + +NA W GSGYP DP TK +++E++D
Sbjct: 254 AKVTRDYLVEGWVWEEATRTGSNATRNEIDGEATWGKGTELGSGYPSDPNTKAWIAEHLD 313
Query: 255 PVFGFPQLVRFSWS 268
FGFP + RFSW+
Sbjct: 314 KTFGFPTIARFSWA 327
>gi|408388455|gb|EKJ68139.1| hypothetical protein FPSE_11606 [Fusarium pseudograminearum CS3096]
Length = 338
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 153/277 (55%), Gaps = 29/277 (10%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
+ PC LG+DEAGRGPVLGPMVYG + P ++ LL+ DSK L R D++ ++
Sbjct: 57 ATPCCLGVDEAGRGPVLGPMVYGVVFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRTL 116
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + L GW +S I +M R Y+LN + DA + LI+ V AAGVNV+E+
Sbjct: 117 CTPGSDLYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEI 176
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+VDT+G P +Y+ KL IFP + I VA K ADS YP V AAS+CAK
Sbjct: 177 FVDTIGQPAAYQAKLQRIFPTVKIIVAKK---------------ADSLYPCVSAASVCAK 221
Query: 213 VSRDSAL----KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
V+RD+AL ++ E E AWGSGYP D ++ N+ PVFG+ RFSW
Sbjct: 222 VTRDAALEVLFEARADDEEKGGEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWG 281
Query: 269 TASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
TA +L+ K G+ + E ++ +T + +FF
Sbjct: 282 TAKDMLEGK-----GNGVKVEWPLDDDGETSRVTDFF 313
>gi|388857401|emb|CCF49075.1| related to 35 kDa ribonuclease H [Ustilago hordei]
Length = 548
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 124/190 (65%), Gaps = 13/190 (6%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLG+DEAGRGPVLGP+VYG AYCP +++ K +G ADSKALT ++RD++L ++
Sbjct: 80 PCVLGVDEAGRGPVLGPLVYGIAYCPISYQDDM-KQIGFADSKALTAERRDNLLSALVDH 138
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+LGW V ++SP I MLRR+ +LN S A + LI V+ GV+V E+YVDTVG
Sbjct: 139 KQYLGWSVRVMSPQDISAGMLRRRPINLNAQSSQATVLLIAGVLEEGVDVTEIYVDTVGD 198
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P SYKK LS FP +P + + SKAD+ YP+VGAASI AKV+RD +
Sbjct: 199 PNSYKKLLSSHFPR------------HPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCI 246
Query: 220 KSWTFQEGIQ 229
++W + E Q
Sbjct: 247 EAWKYAEQQQ 256
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 236 GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
GSGYPGDP T FL +DPVFG+P +VRFSW+TA +L+EK
Sbjct: 322 GSGYPGDPNTVAFLKRTLDPVFGWPGIVRFSWATAKTMLEEK 363
>gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
Length = 344
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 158/284 (55%), Gaps = 29/284 (10%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK LT R +++++C
Sbjct: 59 PCALGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCT 118
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQ--KYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ L GW V+ +S I MLR Y+LN + DA + LI+ V A GVNVRE+
Sbjct: 119 PTSDLYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREI 178
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVDT+G P +Y+ KL+ +FP +TVA K ADS YP V AAS+CAK
Sbjct: 179 YVDTIGQPAAYQAKLARVFPAAKVTVAKK---------------ADSLYPSVSAASVCAK 223
Query: 213 VSRDSALKS-WTFQ----EGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
V+RD AL++ W + E E AWGSGYP D +L N+ PV+G+ RFSW
Sbjct: 224 VTRDVALETLWKARGGGGEEGVEETMAWGSGYPSDGRCVTWLKSNMHPVWGWGPECRFSW 283
Query: 268 STASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
TA ++ +A +G ++ E E+ T+ + ++F E
Sbjct: 284 GTAKDMI--EATPAKGGGVNVEWPVDEDADTQRLIDYFASTGQE 325
>gi|449017231|dbj|BAM80633.1| probable ribonuclease HI large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 328
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 163/254 (64%), Gaps = 19/254 (7%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S+ ++GIDEAGRGPVLGP+VY C +EL + G DSK L+ + R+ I ++
Sbjct: 5 SESFIMGIDEAGRGPVLGPLVYACCACQAGRLQEL-EATGVRDSKKLSAQCRERIFQTLG 63
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ W+ I+SP ++ +ML R++ +LNE S+ A I L++ +++G+ + ++VDTV
Sbjct: 64 ENADWIYSRTRILSPEMLSATMLGRKRVNLNETSYAATISLVKDALSSGMFIEGLFVDTV 123
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G P++Y+ +L IFP++ V + S+A+S + VV AASI AKV+RD
Sbjct: 124 GEPDAYQMRLKRIFPKIPRIV--------------VQSEAESRFAVVAAASIIAKVTRDK 169
Query: 218 ALKSWTFQEGI---QIE-NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
AL++WTF E Q+ + +GSGYP DP+T+++L +++DP+FGFP +VRFSWST S+I
Sbjct: 170 ALRTWTFPEEANDPQLRFSREYGSGYPADPLTQRWLRKHLDPIFGFPSIVRFSWSTCSRI 229
Query: 274 LKEKAVLVEGDEID 287
L+++ V V+ E D
Sbjct: 230 LEKECVQVDWPEED 243
>gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 159/282 (56%), Gaps = 41/282 (14%)
Query: 12 EVESCIRSNDNSRNL-----IISSTIPESCKSQP---CVLGIDEAGRGPVLGPMVYGTAY 63
E + S DN++ L S IP+S + +LG+DEAGRGPVLGPMVY AY
Sbjct: 26 EATKILPSIDNAKILKGETYTYHSPIPKSIQEDSEGEVILGVDEAGRGPVLGPMVYAVAY 85
Query: 64 CPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSM 119
C K +N +L+ DSK LT R +L ++ + L GW +SP I + M
Sbjct: 86 CLKSDNP-MLREHKFDDSKKLTHSLRTHLLQTLTTPDTTLHRNLGWSTISLSPRDISSGM 144
Query: 120 LRR----QKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELI 175
LR Y+LN + DA LI V+++GVN+RE+YVDTVG +Y+ +L ++FP +
Sbjct: 145 LRSTTSSSTYNLNAQAFDATTTLITAVLSSGVNIREIYVDTVGTASTYQSRLQKLFPHIA 204
Query: 176 ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQI-ENNA 234
+TV+ KA DS YP+V AAS+CAKV+RD+A+ G+ + E
Sbjct: 205 VTVSKKA---------------DSIYPIVSAASVCAKVTRDAAI-------GVLVPEGEE 242
Query: 235 WGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTASKILK 275
GSGYPGD TK++L ++PVFG+ + RFSW+TA +L+
Sbjct: 243 IGSGYPGDEKTKEWLRREMEPVFGWEVGMARFSWATARDMLE 284
>gi|448119560|ref|XP_004203761.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384629|emb|CCE78164.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 368
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 163/289 (56%), Gaps = 34/289 (11%)
Query: 30 STIPESCKSQP---CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
S IP + SQP VLG+DEAGRGPVLGPMVYG AY + EL K G +DSK L E
Sbjct: 76 SEIPSAIASQPDEPLVLGVDEAGRGPVLGPMVYGIAYTLEKYQPEL-KKFGFSDSKTLKE 134
Query: 87 KKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR----RQKYSLNEVSHDAAIGL 138
R D+L I E L GW IS I + MLR + Y+LN+ +HD I L
Sbjct: 135 GVRTDLLQKIEDEEHELHNNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIEL 194
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
I+++I +N+ +++VDTVGPP SY+ KL + FP + +TV K AD
Sbjct: 195 IQQIINRKLNIAKIFVDTVGPPASYQAKLQKRFPGIEVTVTKK---------------AD 239
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
S +PVV ASI AKV+RD L + + +++ ++GSGYP DP T ++L+ ++D VFG
Sbjct: 240 SLFPVVSTASIVAKVTRDKVLHYYCDIAPL-LQSASFGSGYPSDPNTSRWLNSSVDTVFG 298
Query: 259 -FPQLVRFSWSTASKIL-KEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
F LVRFSW TA L K A V I + E E+ R++ +FF
Sbjct: 299 WFFGLVRFSWQTAKDALVKNGACSV----IYEAECVKEDTGYRNVASFF 343
>gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
Length = 362
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 173/309 (55%), Gaps = 48/309 (15%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEK 87
SST E + PCVLGIDEAGRGPVLGPMVY Y P + LL + DSK LT +
Sbjct: 55 SSTEAEKAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHNSLLADEHHFDDSKVLTPE 114
Query: 88 KRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIR 140
R +++ S+C + L GW V+++S I + MLR Y+LN + DA I +IR
Sbjct: 115 VRSNLMRSLCTQGHSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIR 174
Query: 141 KVI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
V+ G++V+EVYVDT+G PE+++ +L +FP L ITVA K ADS
Sbjct: 175 GVVETQGIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKK---------------ADS 219
Query: 200 TYPVVGAASICAKVSRDSAL----KSWTFQ------------EGIQIENN--AWGSGYPG 241
YP V AAS+CAKV+RD+AL +SW Q E + E +WGSGYP
Sbjct: 220 LYPCVSAASVCAKVTRDAALEACYESWVNQRKRKRSLESGGGEAVTAEEETLSWGSGYPS 279
Query: 242 DPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSI 301
D +L ++++P+FG+ RFSW T+ ++L+ K+ G ++D EE E+ T +
Sbjct: 280 DGKCIGWLKKDMNPLFGWGIECRFSWGTSKELLEIKS----GVKVDWPVEEDES--TMLV 333
Query: 302 RNFFKPKAD 310
+F K++
Sbjct: 334 TQYFTSKSE 342
>gi|341039044|gb|EGS24036.1| hypothetical protein CTHT_0007470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 363
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 166/316 (52%), Gaps = 45/316 (14%)
Query: 25 NLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKA 83
+L+ S P PCVLG+DEAGRGPVLGPMVYG + P D ++ LL++ DSK
Sbjct: 47 SLLPPSGSPSGTLGPPCVLGVDEAGRGPVLGPMVYGIFFLPLDLSDSLLRDTHHFDDSKV 106
Query: 84 LTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIG 137
LT R ++ ++C E + L GW + +S I + MLR Y+LN + DA +
Sbjct: 107 LTPATRSALMQTLCTEGSDLHTSCGWAITALSARDISSGMLRPSTAGYNLNAQAQDATVA 166
Query: 138 LIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
LI+KV A+GVNV E+YVDT+G P +Y+ KL +FP + ITVA K A
Sbjct: 167 LIKKVYASGVNVTEIYVDTIGHPATYQAKLERVFPGVKITVAKK---------------A 211
Query: 198 DSTYPVVGAASICAKVSRDSALKS-WTFQEGI--------------------QIENNAWG 236
DS YP V AAS+CAKV+RD+AL+ W +G + E AWG
Sbjct: 212 DSLYPCVSAASVCAKVTRDAALEVLWEAAKGRGRTPKGEDEMDVGEKRGESEESEGMAWG 271
Query: 237 SGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENK 296
SGYP D +L N+ PV+G+ RFSW TA +L+ G ++D + +
Sbjct: 272 SGYPSDARCVSWLKANMHPVWGWGPECRFSWGTAKDMLEAPPTKGGGVKVDWPVD--NDG 329
Query: 297 KTRSIRNFFKPKADEN 312
T + +FF K E
Sbjct: 330 DTHRLTDFFTSKHQEQ 345
>gi|400597529|gb|EJP65259.1| ribonuclease HII [Beauveria bassiana ARSEF 2860]
Length = 340
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 158/284 (55%), Gaps = 36/284 (12%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
+ PC LG+DEAGRGPVLGPMVYG Y P ++ LL++ DSK LT R +++++
Sbjct: 54 ATPCCLGVDEAGRGPVLGPMVYGVFYLPIAQSDPLLRSAHHFDDSKVLTAAVRASLMEAL 113
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQK-YSLNEVSHDAAIGLIRKVIAAGVNVRE 151
C+ + L GW +S I +ML+ Y+LN + DA + LI+ V A GVNV+E
Sbjct: 114 CRPGSDLHDSCGWATTALSARDIGANMLKPVGVYNLNAQAMDATVDLIKGVYARGVNVQE 173
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+YVDT+GPP +Y+ KL IFP +TV A KADS Y V AAS+CA
Sbjct: 174 IYVDTIGPPATYQAKLQRIFPTAKVTV---------------AKKADSLYACVSAASVCA 218
Query: 212 KVSRDSALKSW--------TFQEGIQIENN--AWGSGYPGDPVTKKFLSENIDPVFGFPQ 261
KV+RD AL++ E I ++ AWGSGYP D ++ N+ PVFG+
Sbjct: 219 KVTRDVALEAVYRDRKDHPADHEEIDDDDTAMAWGSGYPSDARCTAWMRSNLHPVFGWGP 278
Query: 262 LVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
RFSWSTA +L+ K G+ + E ++ +T + +FF
Sbjct: 279 ECRFSWSTAKDMLEAK-----GNGVKVEWPVEDDGETSRVTDFF 317
>gi|389624103|ref|XP_003709705.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|351649234|gb|EHA57093.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|440466622|gb|ELQ35881.1| ribonuclease H2 subunit A [Magnaporthe oryzae Y34]
gi|440489318|gb|ELQ68978.1| ribonuclease H2 subunit A [Magnaporthe oryzae P131]
Length = 355
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 159/301 (52%), Gaps = 43/301 (14%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALT 85
S +P+S S PCVLG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK LT
Sbjct: 42 SPVPDSLLSPSPVPCVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLT 101
Query: 86 EKKRDDILDSICKE---------NAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHD 133
R +++S+C N+ GW + +S I M+R Y+LN + D
Sbjct: 102 PAVRSSLMESLCTPTLSQSAGSLNSTCGWAISSLSARDIGAGMMRPATSAAYNLNAQALD 161
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
A + LI+ V+ GVNV E+YVDTVGPP +Y+KKL FP +TV+ K
Sbjct: 162 ATVSLIQGVMDRGVNVAEIYVDTVGPPAAYQKKLERFFPTAKVTVSKK------------ 209
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSW--------TFQEGIQIENNAWGSGYPGDPVT 245
ADS YP V AAS+CAKV+RD+AL+ EG + E WGSGYP D
Sbjct: 210 ---ADSLYPCVSAASVCAKVTRDAALEVLYKNVLSEIAKAEGGEDEEIGWGSGYPSDARC 266
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEID-DEEEEGENKKTRSIRNF 304
+L N+ PVFG+ RFSW T +L+ +D E++GE+ + + +F
Sbjct: 267 VGWLKRNMHPVFGWGTECRFSWGTVKDMLEAAKSGNGAVRVDWPVEDDGESHR---VTDF 323
Query: 305 F 305
F
Sbjct: 324 F 324
>gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1]
Length = 338
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 157/293 (53%), Gaps = 35/293 (11%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSI 96
+ PC LG+DEAGRGPVLGPMVYG + P ++ LL+ DSK L R D++ +
Sbjct: 57 ATPCCLGVDEAGRGPVLGPMVYGVFFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRIL 116
Query: 97 CKENAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
C + L GW +S I +M R Y+LN + DA + LI+ V AAGVNV+E+
Sbjct: 117 CTPGSDLYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEI 176
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+VDT+G P +Y+ KL IFP + I VA K ADS YP V AAS+CAK
Sbjct: 177 FVDTIGQPAAYQAKLQRIFPTVKIIVAKK---------------ADSLYPCVSAASVCAK 221
Query: 213 VSRDSAL----KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
V+RD+AL ++ E E AWGSGYP D ++ N+ PVFG+ RFSW
Sbjct: 222 VTRDAALEVLFEARADGEEKGGEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWG 281
Query: 269 TASKILKEK--AVLVEGDEIDDEEEE---------GENKKTRSIRNFFKPKAD 310
TA +L+ K V VE DD E ++K++ + N+F AD
Sbjct: 282 TAKDMLEGKGNGVKVEWPLDDDGETSRVTDFFIAGDKSKESSELGNWFGTPAD 334
>gi|346323837|gb|EGX93435.1| ribonuclease HI large subunit [Cordyceps militaris CM01]
Length = 338
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 153/280 (54%), Gaps = 34/280 (12%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVYG Y P ++ LL++ DSK LT R ++ ++C
Sbjct: 56 PCCLGVDEAGRGPVLGPMVYGVFYLPIAQSDALLRSAHHFDDSKVLTAGVRASLMATLCA 115
Query: 99 E----NAWLGWMVEIISPNVICNSMLRR-QKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+A GW +S I +ML+ Y+LN + DA + LIR V A GVNV+E+Y
Sbjct: 116 PGSDLHAACGWATAALSARDIGANMLQPVGAYNLNAQAMDATVDLIRGVYARGVNVQEIY 175
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
VDT+GPP +Y+ KL IFP +TV A KADS Y V AAS+CAKV
Sbjct: 176 VDTIGPPATYQAKLQRIFPTAKVTV---------------AKKADSLYACVSAASVCAKV 220
Query: 214 SRDSAL-------KSWTFQEGIQIENN-AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRF 265
+RD AL K +G + + AWGSGYP D ++ N+ PVFG+ RF
Sbjct: 221 TRDVALETLYEDRKDPADHQGDEDDGAPAWGSGYPSDGRCTGWMRGNLHPVFGWGPECRF 280
Query: 266 SWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
SW TA +L+ K G+ + E ++ +T + +FF
Sbjct: 281 SWGTAKDMLEAK-----GNGVKVEWPVDDDGETSRVTDFF 315
>gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102]
Length = 337
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 154/279 (55%), Gaps = 32/279 (11%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
P LG+DEAGRGPVLGPMVYG Y P + LL++ DSKALT R ++ ++C
Sbjct: 54 PLCLGVDEAGRGPVLGPMVYGIFYLPLPQSGPLLRDTHHFDDSKALTAAARSSLMRALCT 113
Query: 99 E----NAWLGWMVEIISPNVICNSMLRRQK-YSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
E +A GW +S I MLR Y+LN + DA + LIR + G+N+REVY
Sbjct: 114 EGTDLHAQCGWATAALSARDISAGMLRPAGVYNLNAQAVDATVALIRGALKRGLNIREVY 173
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
VDTVG P +++ +L +FP ITVA K ADS YP V AAS+CAKV
Sbjct: 174 VDTVGQPAAHQARLQRVFPTTKITVAKK---------------ADSLYPCVSAASVCAKV 218
Query: 214 SRDSALKSW--TFQEGIQIENNA-----WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
+RD+AL++ ++G A WGSGYP D +L N+ PVFG+ RFS
Sbjct: 219 TRDAALEALYGARRDGDGDGEGAAAGMEWGSGYPSDARCVGWLRRNMHPVFGWGPECRFS 278
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
W TA +L+ K V+ D EEE G++ + + +FF
Sbjct: 279 WGTAKDMLETKGGGVKVD-WPVEEEGGDSMR---VTDFF 313
>gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 352
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 179/334 (53%), Gaps = 49/334 (14%)
Query: 4 IHTASNVTEVESCIRS---NDNSRNLIISSTIP---ESCKSQPCVLGIDEAGRGPVLGPM 57
IH +S ++ C S D + +L + ST P S + PCVLG+DEAGRGPVLGPM
Sbjct: 25 IHPSSLLSGQSYCHYSPCPEDITSSLNVDSTTPIPDPSIPTTPCVLGVDEAGRGPVLGPM 84
Query: 58 VYGTAYCPKDNN-----EELLKNLGCADSKALTEKKRDDILDSICKENAWL----GWMVE 108
VY Y P + EE N DSK LT R +++ +C L GW V+
Sbjct: 85 VYSAFYLPLSLHHSLLAEEHHFN----DSKVLTPGVRSNLMRLLCTPGHSLQKSCGWAVK 140
Query: 109 IISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVIAA-GVNVREVYVDTVGPPESYKK 165
++S I M R Y+LN + DA + +IR V+ GV+V+EVY+DT+G P+SY+K
Sbjct: 141 LLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEERGVDVKEVYIDTIGNPQSYQK 200
Query: 166 KLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS-------A 218
KL IFP L ITVA KADS +P V AAS+CAKV+RDS A
Sbjct: 201 KLEMIFPSLKITVA---------------KKADSLFPCVSAASVCAKVTRDSALDICYEA 245
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
L+ +G++ N+ WGSGYP D +L + + P+FG+ RFSW TA ++L+ KA
Sbjct: 246 LQKERVGKGMEHMNDGWGSGYPSDSKCTSWLKKEMHPLFGWGNECRFSWGTAKELLEVKA 305
Query: 279 VLVEGDEIDDEEEEGENKKTRSIRNFFKPKADEN 312
L + D DE+EE T+ + F A+ N
Sbjct: 306 GL-KVDWPADEDEEA----TKMTQYFTTASAESN 334
>gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 339
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 154/280 (55%), Gaps = 41/280 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKEN 100
VLG+DEAGRGPVLGPMVY Y P D + LL + DSK LT R +++ ++C
Sbjct: 59 VLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLAQKYSFDDSKVLTPAVRLNLMRTLCTPG 118
Query: 101 AWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIAA-GVNVREVY 153
L GW ++++ I + M+R Y+LN + DA I +IR ++ VNVREVY
Sbjct: 119 TPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVNVREVY 178
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P SY++KL IFP L ITVA K ADS YP V AAS+ AKV
Sbjct: 179 IDTIGNPASYQQKLERIFPTLKITVAKK---------------ADSLYPCVSAASVAAKV 223
Query: 214 SRDSALKSWTFQEGI--------QIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRF 265
+RD AL+ ++E + Q + WGSGYP D +L N+DPVFG+ RF
Sbjct: 224 TRDIALE-LCYEEIMKAKSLDQSQTTTDTWGSGYPSDSKCVGWLRRNMDPVFGWGNECRF 282
Query: 266 SWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
SW TA ++L+ K G +D EEE E IR+F
Sbjct: 283 SWGTAKEMLELKG----GARVDWPEEENEQ-----IRDFL 313
>gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS]
gi|392862022|gb|EAS37377.2| ribonuclease HII [Coccidioides immitis RS]
Length = 353
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 163/293 (55%), Gaps = 40/293 (13%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICK 98
PCVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT R +++ +C
Sbjct: 68 PCVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCT 127
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVIAA-GVNVRE 151
+ L GW ++++S I + M R Y+LN + DA + +IR V+ GV+V+E
Sbjct: 128 PDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKE 187
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VY+DT+G P++Y+KKL IFP L ITVA KAD+ +P V AAS+CA
Sbjct: 188 VYIDTIGNPQTYQKKLERIFPSLKITVA---------------KKADALFPCVSAASVCA 232
Query: 212 KVSRDSAL----KSWTFQEGIQIE----NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
KV+RD+AL + Q +E NN WGSGYP D +L + + P+FG+
Sbjct: 233 KVTRDAALEICYEELQRQRAGMVEMEHMNNGWGSGYPSDSKCVTWLKKEMHPLFGWGNEC 292
Query: 264 RFSWSTASKILKEKAVL-VEGDEIDDEEEEGENKKTRSIRNFFKPKADENVES 315
RFSW TA +L+ KA L V+ ++D++ + + FF + EN E+
Sbjct: 293 RFSWGTAKDLLEVKAGLKVDWPAVEDDDTK--------MTQFFITASTENAEA 337
>gi|425774265|gb|EKV12578.1| Ribonuclease [Penicillium digitatum PHI26]
Length = 333
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 162/283 (57%), Gaps = 35/283 (12%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEK 87
S TI ++ +S PCVLG+DEAGRGPVLGPMVYG Y P D + LL + DSK LT
Sbjct: 40 SPTIHDTNESTPCVLGVDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPA 99
Query: 88 KRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRK 141
R++++ + L G+ V+++S I + M+R Y+LN + DA + +IR
Sbjct: 100 VRENLMHLLNTPGYPLFESCGYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRG 159
Query: 142 VIA-AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V+ GV+VREVY+DT+G P +Y++KL IFP L ITVA K ADS
Sbjct: 160 VVEDRGVDVREVYIDTIGNPATYQQKLERIFPSLKITVAKK---------------ADSL 204
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENN------AWGSGYPGDPVTKKFLSENID 254
YP V AAS+ AKV+RD AL+ ++ ++ E + WGSGYP D +L N+D
Sbjct: 205 YPCVSAASVVAKVTRDVALEV-MYEAVLRAEQSLSPTPQTWGSGYPSDSKCVGWLRRNMD 263
Query: 255 PVFGFPQLVRFSWSTASKILKEKAVLVEGDEID-DEEEEGENK 296
VFG+ RFSW TA ++L+ K G +D +EEEG +
Sbjct: 264 TVFGWGSECRFSWGTAKEMLEMKV----GARVDWPDEEEGAPR 302
>gi|425778544|gb|EKV16668.1| Ribonuclease [Penicillium digitatum Pd1]
Length = 333
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 162/283 (57%), Gaps = 35/283 (12%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEK 87
S TI ++ +S PCVLG+DEAGRGPVLGPMVYG Y P D + LL + DSK LT
Sbjct: 40 SPTIHDTNESTPCVLGVDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPA 99
Query: 88 KRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRK 141
R++++ + L G+ V+++S I + M+R Y+LN + DA + +IR
Sbjct: 100 VRENLMHLLNTPGYPLFESCGYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRG 159
Query: 142 VIA-AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V+ GV+VREVY+DT+G P +Y++KL IFP L ITVA K ADS
Sbjct: 160 VVEDRGVDVREVYIDTIGNPATYQQKLERIFPSLKITVAKK---------------ADSL 204
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENN------AWGSGYPGDPVTKKFLSENID 254
YP V AAS+ AKV+RD AL+ ++ ++ E + WGSGYP D +L N+D
Sbjct: 205 YPCVSAASVVAKVTRDVALEV-MYEAVLRAEQSLSPTPQTWGSGYPSDSKCVGWLRRNMD 263
Query: 255 PVFGFPQLVRFSWSTASKILKEKAVLVEGDEID-DEEEEGENK 296
VFG+ RFSW TA ++L+ K G +D +EEEG +
Sbjct: 264 TVFGWGSECRFSWGTAKEMLEMKG----GARVDWPDEEEGAPR 302
>gi|342879882|gb|EGU81115.1| hypothetical protein FOXB_08389 [Fusarium oxysporum Fo5176]
Length = 339
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 164/300 (54%), Gaps = 36/300 (12%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK-NLGCADSKALT 85
++ S + + PC LG+DEAGRGPVLGPMVYG + P D ++ LL+ DSK LT
Sbjct: 46 LLPSDPSDPSSATPCCLGVDEAGRGPVLGPMVYGVFFLPIDLSDSLLREKHHFDDSKVLT 105
Query: 86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR-RQKYSLNEVSHDAAIGLIR 140
R D++ ++C + L GW +S I +M R Y+LN + DA + LI+
Sbjct: 106 PAVRSDLMRTLCTPGSDLHDSCGWATASLSARDIGANMYRPTNAYNLNAQAMDATVDLIK 165
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V A GVN++E+YVDT+G P +Y+ KL +FP ITV A KADS
Sbjct: 166 AVYALGVNIQEIYVDTIGQPAAYQAKLQRVFPTAKITV---------------AKKADSL 210
Query: 201 YPVVGAASICAKVSRDSAL----KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPV 256
Y V AAS+CAKV+RD+AL ++ ++ E AWGSGYP D ++ N+ PV
Sbjct: 211 YACVSAASVCAKVTRDAALEVLFEARADEDEKDGEGMAWGSGYPSDGRCVGWMKGNMHPV 270
Query: 257 FGFPQLVRFSWSTASKILKEKAVLVEGD-EIDDEEEEG----------ENKKTRSIRNFF 305
FG+ RFSW TA +L+ K V+ + ++D+ E G ++K++ + N+F
Sbjct: 271 FGWGPECRFSWGTAKDMLEAKGNGVKVEWPLEDDGETGRLTDYFTSGDKDKESSELGNWF 330
>gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 179/321 (55%), Gaps = 49/321 (15%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKK 88
ST + + PCVLGIDEAGRGPVLGPMVY Y P ++ LL + DSK LT +
Sbjct: 56 STEEKKAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEV 115
Query: 89 RDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRK 141
R +++ S+C ++ L GW V+++S I + MLR Y+LN + DA I +IR
Sbjct: 116 RSNLMRSLCTQSHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRG 175
Query: 142 VI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V+ G+NV+EVYVDT+G PE+++ +L +FP L ITVA KA DS
Sbjct: 176 VVETQGINVKEVYVDTIGKPETHQARLLRVFPGLKITVAKKA---------------DSL 220
Query: 201 YPVVGAASICAKVSRDSAL----KSWTFQEGIQI-----ENNA--------WGSGYPGDP 243
YP V AAS+CAKV+RD+AL +SW Q Q E+ A WGSGYP D
Sbjct: 221 YPCVSAASVCAKVTRDAALEACYESWLNQREKQRTLVTGEDEATTADEILTWGSGYPSDG 280
Query: 244 VTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
+L ++++ +FG+ RFSW T+ ++L+ K+ G ++D EE ++ T +
Sbjct: 281 KCVGWLKKDMNRLFGWGVECRFSWGTSKELLEIKS----GLKVDWPAEEDDS--TMLVTQ 334
Query: 304 FFKPKADENVESPVVEERHAF 324
+F K++ E PV E R +
Sbjct: 335 YFTSKSE--TEGPVNELRDWY 353
>gi|410083421|ref|XP_003959288.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
gi|372465879|emb|CCF60153.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
Length = 312
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 165/298 (55%), Gaps = 20/298 (6%)
Query: 30 STIPESCKSQ--PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKALTE 86
S +PES KS P +LG+DEAGRGPV+GPMVYG AYC +D E+ L+ + DSK LT+
Sbjct: 20 SEVPESIKSSNSPVILGVDEAGRGPVVGPMVYGIAYCTRDFQEQVLIPDYDFDDSKKLTD 79
Query: 87 KKRDDILDSICKENAW--LGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRK 141
+ R + I ++ +G+ ISP I N M R + Y+LNE +HD + LI+
Sbjct: 80 EVRRKLFRLIYEDRQINDVGYATTCISPCDISNGMFRFPPSKNYNLNEQAHDVTMDLIQG 139
Query: 142 VIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
VI GV + VYVDTVGPP +Y+KKL FP + TVA KADS Y VV A +
Sbjct: 140 VINQGVTIEHVYVDTVGPPNTYQKKLETRFPGIKFTVAKKADSLYCVVSVASVVAKVTRD 199
Query: 202 PVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP- 260
+V A + DS + G E GSGYP DP TK +L + P+FG+P
Sbjct: 200 LLVEA------LEEDSTINIRDHTTG---EQCPVGSGYPSDPRTKVWLRQQQTPLFGWPL 250
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVV 318
++VRFSW T +L + A +G EI EE+ +KK ++ +K ++ SP+
Sbjct: 251 EMVRFSWQTCQTLLDDNAKTGKGVEIQWEEDFINSKK--NLEQAWKTYTSQDTNSPIT 306
>gi|402076046|gb|EJT71469.1| ribonuclease H2 subunit A [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 373
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 155/284 (54%), Gaps = 45/284 (15%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK L + R +++++C
Sbjct: 74 PCFLGVDEAGRGPVLGPMVYGVFYLPAPLSDPLLRETHHFDDSKVLKPEVRSALMEALCS 133
Query: 99 ENAWL----GWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVRE 151
+ L GW V +S I +M+R Y+LN + DA + LIR V+ GVNV E
Sbjct: 134 AGSDLYSSCGWAVSALSARDIGANMMRPASAAAYNLNAQAFDATVALIRGVMDRGVNVAE 193
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+YVDTVGPP +Y+K+L +FP +TVA K ADS YP V AAS+CA
Sbjct: 194 IYVDTVGPPATYQKRLERVFPTARVTVAKK---------------ADSLYPCVSAASVCA 238
Query: 212 KVSRDSALK------------SWTFQEGIQI-----ENNAWGSGYPGDPVTKKFLSENID 254
KV+RD+AL+ + +E Q E +WGSGYP D ++ N+
Sbjct: 239 KVTRDAALEVLYKTVLRPPAAAPGGEEAEQDDEEGNEQASWGSGYPSDARCVTWMRRNMH 298
Query: 255 PVFGFPQLVRFSWSTASKILKE----KAVLVEGD-EIDDEEEEG 293
PVFG+ RFSW TA ++L+ K V+ D +DD+ E G
Sbjct: 299 PVFGWGPECRFSWGTAKEMLEPTGTAKVASVKVDWPLDDDGENG 342
>gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
Length = 269
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 155/280 (55%), Gaps = 25/280 (8%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
+S P+ K +GIDEAGRGP LGPMVY A P N E K++ DSK LT +
Sbjct: 7 VSVEFPDELKGIELEMGIDEAGRGPALGPMVYSGAIAP--NKYEWPKDVD--DSKKLTAE 62
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVIC--NSMLRRQKYSLNEVSHDAAIGLIRKVIAA 145
+R++I D I K +G+ V +IS I + L SLN VSH AA L++ +
Sbjct: 63 QREEIFDEIKKLP--VGFAVRVISAEEISAKQTALVNPPISLNTVSHHAARDLVQAFLDK 120
Query: 146 GVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVG 205
G+N++ +YVDTVG ESY+ L + FP + +TV +KAD+TY VV G
Sbjct: 121 GLNIKALYVDTVGIAESYQDWLQDKFPNIKVTVRAKADATYKVV---------------G 165
Query: 206 AASICAKVSRDSALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
AASICAKV+RD L + F+E G++I ++ WGSGYP DP T +L N DPVFG+P + R
Sbjct: 166 AASICAKVTRDRLLADFKFEEPGLEISHD-WGSGYPSDPKTSNWLETNFDPVFGYPSVAR 224
Query: 265 FSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNF 304
F W + + + + + D + TR ++ F
Sbjct: 225 FDWKPIKMMFENNKMTADFELPDPHILDSPFFATRGLKQF 264
>gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 260
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 23/259 (8%)
Query: 23 SRNLIISSTIP--ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
S + + S++P E + ++GIDEAGRGPVLGPMVY AYCP + + +L+++G D
Sbjct: 17 SDSYVFHSSLPAAEQTPGEGWIMGIDEAGRGPVLGPMVYAAAYCPL-SFKPILESIGFDD 75
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SKAL+ + R + +S L + +SP I ++MLR+ +LN + DA +GLI+
Sbjct: 76 SKALSAETRQTLWESFGVHPP-LCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQ 134
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ G+NV E YVD +GP ++ +L+ IFP + TV KADS
Sbjct: 135 AALNRGINVTECYVDALGPAPQWQARLTAIFPTIKFTV---------------CPKADSL 179
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+ +VGAASI AKV+RD + W+ E E GSGYP DP T+ +L +IDPVFG+
Sbjct: 180 FKIVGAASIVAKVTRDRYVHGWSQDE----EEVIRGSGYPSDPKTQAYLKGSIDPVFGYK 235
Query: 261 QLVRFSWSTASKILKEKAV 279
+VRFSW+T +L ++ V
Sbjct: 236 GIVRFSWATVKVLLDKQGV 254
>gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001]
Length = 344
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 151/275 (54%), Gaps = 30/275 (10%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
P LG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK LT R ++ ++C
Sbjct: 66 PVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAALCT 125
Query: 99 ENAWL----GWMVEIISPNVICNSMLR-RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+ L G+ + +S I + M+R Y+LN + DA + LI+ V A GVN++E+Y
Sbjct: 126 AGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQEIY 185
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
VDTVG P +Y+ KL FP ITVA K ADS YP V AAS+CAKV
Sbjct: 186 VDTVGQPAAYQAKLQRFFPATKITVAKK---------------ADSLYPCVSAASVCAKV 230
Query: 214 SRDSALK---SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
+RD+AL+ E + E AWGSGYP D ++ N+ PVFG+ RFSW TA
Sbjct: 231 TRDAALEVLYKARAPESVVEEGMAWGSGYPSDGRCVSWMKSNMHPVFGWGPECRFSWGTA 290
Query: 271 SKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
+L+ K L ++D+++ T + +FF
Sbjct: 291 KDMLEGKGGLKVDWPVEDDDD------TARMTDFF 319
>gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str.
Silveira]
Length = 353
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 163/293 (55%), Gaps = 40/293 (13%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICK 98
PCVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT R +++ +C
Sbjct: 68 PCVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCT 127
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVIAA-GVNVRE 151
+ L GW ++++S I + M R Y+LN + DA + +IR V+ GV+V+E
Sbjct: 128 PDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKE 187
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VY+DT+G P++Y+KKL IFP L ITVA KAD+ +P V AAS+CA
Sbjct: 188 VYIDTIGNPQTYQKKLERIFPSLKITVA---------------KKADALFPCVSAASVCA 232
Query: 212 KVSRDSAL----KSWTFQEGIQIE----NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
KV+RD+AL + Q +E N+ WGSGYP D +L + + P+FG+
Sbjct: 233 KVTRDAALEICYEELQKQRAGMVEMEHMNDGWGSGYPSDSKCVTWLKKEMHPLFGWGNEC 292
Query: 264 RFSWSTASKILKEKAVL-VEGDEIDDEEEEGENKKTRSIRNFFKPKADENVES 315
RFSW TA +L+ KA L V+ ++D++ + + FF + EN E+
Sbjct: 293 RFSWGTAKDLLEVKAGLKVDWPAVEDDDTK--------MTQFFITASTENAEA 337
>gi|358368996|dbj|GAA85612.1| ribonuclease HI large subunit [Aspergillus kawachii IFO 4308]
Length = 353
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 163/294 (55%), Gaps = 39/294 (13%)
Query: 26 LIISSTIPESCKSQP---CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADS 81
+I +S + ES S VLG+DEAGRGPVLGPMVY Y P+D + LL ++ DS
Sbjct: 49 VIAASKVTESATSSSPNRLVLGVDEAGRGPVLGPMVYSAFYLPQDLHHSLLTRDYSFNDS 108
Query: 82 KALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHDAA 135
K LT R +++ +C L GW V+++S I + M+R Y+LN + DA
Sbjct: 109 KVLTPGVRANLMKLLCTPGNPLHESCGWAVKLLSARDISSGMMRPGAGAYNLNAQAMDAT 168
Query: 136 IGLIRKVIA-AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIA 194
I LIR +I ++VREVY+DT+G P +Y++KL +IFP L ITVA K
Sbjct: 169 IELIRGIIEDRDMDVREVYIDTIGNPATYQQKLEKIFPSLRITVAKK------------- 215
Query: 195 SKADSTYPVVGAASICAKVSRDSALK--SWTFQEGIQIEN-------NAWGSGYPGDPVT 245
ADS YP V AAS+ AKV+RD AL E ++ E+ +WGSGYP D
Sbjct: 216 --ADSLYPCVSAASVAAKVTRDVALDLCHQAIYEDVRSEDASEAVVPQSWGSGYPSDSKC 273
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR 299
+L +N+DP+FG+ RFSW TA ++L+ K ++D EE EN + R
Sbjct: 274 ANWLKKNMDPIFGWGNECRFSWGTAKELLELKGR----PKVDWPGEEEENTQLR 323
>gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
Length = 343
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 165/316 (52%), Gaps = 35/316 (11%)
Query: 12 EVESCIRSNDNSRNLIISSTIPES----CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKD 67
E+ + + + ++ S +P S + PC LG+DEAGRGPVLGPMVYG + P
Sbjct: 35 HTEAALAGDTFTHVVVPPSLLPSSPDDPASAVPCCLGVDEAGRGPVLGPMVYGVFFLPLT 94
Query: 68 NNEELLKNLG-CADSKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR- 121
++ LL++ DSK LT R ++ ++C + L GW ++ +S I ML
Sbjct: 95 ISDSLLRDTHHFDDSKVLTAAVRSKLMRTLCTPGSDLHTECGWAIKALSARDITTGMLHP 154
Query: 122 RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASK 181
Y+LN + DA + LI+ AAGVNV+E+YVDTVGPP S++ KL FP ITV
Sbjct: 155 TTTYNLNAQALDATVDLIKAAYAAGVNVQEIYVDTVGPPASHQAKLQRFFPTAKITV--- 211
Query: 182 ADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENN-AWGSGYP 240
KADS + V AAS+CAKV+RD+ L+ + +G EN WGSGY
Sbjct: 212 ------------TKKADSLFACVSAASVCAKVTRDATLEVLSDAKGELTENGMGWGSGYS 259
Query: 241 GDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL-KEKAVLVEGDEIDDEEEEGENKKTR 299
D ++ ++ P+FG+ RF W T+ +L K V VE DD E T
Sbjct: 260 SDKRCTGWMKNSMHPLFGWGHECRFGWGTSKDMLEKANGVKVEWPVEDDGE-------TS 312
Query: 300 SIRNFFKPKADENVES 315
+ +FF AD++ ES
Sbjct: 313 RVTDFFT-AADKDKES 327
>gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14]
Length = 303
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 158/287 (55%), Gaps = 22/287 (7%)
Query: 24 RNLIISSTIPESCKSQ-PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
R I S +P SC+S+ P ++GIDEAGRGPVLGPMVY AY D+NE + +G DSK
Sbjct: 5 RKKFIQSDVPVSCRSRNPVIMGIDEAGRGPVLGPMVYSAAYWAIDSNEAC-EAMGFDDSK 63
Query: 83 ALTEKKRDDILDSICK--ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
L+ R + +I + E + W+ +S I + M R+ + +LNE++ DA I +I
Sbjct: 64 VLSAASRKSLYKTITESTEIGSISWIARSVSACEISDKMQRKVR-NLNEIARDATIQIIE 122
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V A V ++ VYVDT+G P Y+ L++ F E I V K KAD
Sbjct: 123 IVQAKRVCLQCVYVDTIGDPSWYQNFLTKHFREKITFVVRK--------------KADQL 168
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+ +V AASI AKV RD+ L+ W ++ +GSGYP DP TK +L + DP+F +P
Sbjct: 169 FKIVSAASIVAKVIRDTILEEWKWETLTHTLPTEFGSGYPSDPSTKAWLLQYRDPIFAYP 228
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
+VRFSWST +L+ + DD + E+ + SI +FF P
Sbjct: 229 NIVRFSWSTIENLLQATPKVAWA--FDDSTPKNESVRA-SITSFFPP 272
>gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
Length = 361
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 47/312 (15%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALT 85
+ SST + + PCVLGIDEAGRGPVLGPMVY Y P ++ LL + DSK LT
Sbjct: 53 VKSSTEEKKAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPVHLHKSLLADEHHFDDSKVLT 112
Query: 86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGL 138
+ R +++ S+C + L GW V+++S I + MLR Y+LN + DA I +
Sbjct: 113 PEVRSNLMRSLCTQGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEI 172
Query: 139 IRKVI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
IR V+ G++V+EVYVDT+G PE+++ +L +FP L ITVA K A
Sbjct: 173 IRGVVETHGIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKK---------------A 217
Query: 198 DSTYPVVGAASICAKVSRDSAL----KSWTFQE--------GIQIENNA-----WGSGYP 240
DS YP V AAS+CAKV+RD+AL +SW Q G E+ A WGSGYP
Sbjct: 218 DSLYPCVSAASVCAKVTRDAALEACYESWLNQREKQRAVATGEDEESTAEEILTWGSGYP 277
Query: 241 GDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRS 300
D +L ++++ +FG+ RFSW T+ ++L+ K+ G ++D EE ++ T
Sbjct: 278 SDGKCVGWLKKDMNRLFGWGYECRFSWGTSKELLEIKS----GLKVDWPTEEDDS--TML 331
Query: 301 IRNFFKPKADEN 312
+ +F K++ +
Sbjct: 332 VTQYFTSKSEAD 343
>gi|361126847|gb|EHK98833.1| putative Ribonuclease H2 subunit A [Glarea lozoyensis 74030]
Length = 344
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 152/267 (56%), Gaps = 37/267 (13%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK LT R +++++C
Sbjct: 63 PCALGVDEAGRGPVLGPMVYGLFYLPLPLSDPLLRQTHHFDDSKVLTPTVRSSLMETLCT 122
Query: 99 ENAWL----GWMVEIISPNVICNSMLR-RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+ L GW VE++S I +M++ Y+LN + DA I LI V GVNV+E+Y
Sbjct: 123 PSTDLYTQCGWAVEVMSARDIGANMMKPAATYNLNAQAMDATINLIHGVYRQGVNVKEIY 182
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL +IFP ++TVA K ADS YP V AAS+CAKV
Sbjct: 183 IDTIGNPATYQRKLEKIFPTALVTVAKK---------------ADSLYPCVSAASVCAKV 227
Query: 214 SRDSALKSWTFQEGIQIENN---------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD+AL+ ++ ++ ++ WGSGYP D +L N+DPVFG+ R
Sbjct: 228 TRDAALEV-LYESYLEPKDEEDEMEVVEPTWGSGYPSDAKCTTWLKRNMDPVFGWGSECR 286
Query: 265 FSWSTASKILKEKAVL------VEGDE 285
FSW T +L K V ++GDE
Sbjct: 287 FSWGTVKDMLDAKNVAAKVEWPIDGDE 313
>gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
Length = 361
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 178/321 (55%), Gaps = 49/321 (15%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKK 88
ST + + PCVLGIDEAGRGPVLGPMVY Y P ++ LL + DSK LT +
Sbjct: 56 STEEKKAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEV 115
Query: 89 RDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRK 141
R +++ S+C + L GW V+++S I + MLR Y+LN + DA I +IR
Sbjct: 116 RSNLMRSLCTQGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRG 175
Query: 142 VI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V+ G++V+EVYVDT+G PE+++ +L +FP L ITVA K ADS
Sbjct: 176 VVETQGIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKK---------------ADSL 220
Query: 201 YPVVGAASICAKVSRDSAL----KSWTFQEGIQI-----ENNA--------WGSGYPGDP 243
YP V AAS+CAKV+RD+AL +SW Q Q E+ A WGSGYP D
Sbjct: 221 YPCVSAASVCAKVTRDAALEACYESWLNQREKQRTLETGEDEATTADEILTWGSGYPSDG 280
Query: 244 VTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
+L ++++ +FG+ RFSW T+ ++L+ K+ G ++D EE ++ T +
Sbjct: 281 KCVGWLKKDMNRLFGWGVECRFSWGTSKELLEVKS----GLKVDWPAEEDDS--TMLVTQ 334
Query: 304 FFKPKADENVESPVVEERHAF 324
+F K++ E PV + R +
Sbjct: 335 YFTSKSE--TEGPVNDLRDWY 353
>gi|348677951|gb|EGZ17768.1| hypothetical protein PHYSODRAFT_545238 [Phytophthora sojae]
Length = 809
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 141/241 (58%), Gaps = 18/241 (7%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRGPV+GPMVYG AY P +N+ + LG DSKAL+ + R + + +
Sbjct: 1 MLGIDEAGRGPVMGPMVYGAAYWPVADNDAM-SALGFDDSKALSAESRAQLFEKMQSTEG 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
LGW+V +IS I + M +RQ +LNE+S DAAI LI +V G V++V+VDTVG P
Sbjct: 60 -LGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPR 117
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ L++ F I K KADS + VV AASI AKV+RD +
Sbjct: 118 WYQSFLTKHFNGTIEFRVEK--------------KADSLFKVVSAASIAAKVTRDRVISD 163
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLV 281
W ++ +GSGYP DP TK +L+ ++D VF FP ++RFSW T EKAV V
Sbjct: 164 WKWESPALDFPTDFGSGYPSDPKTKAWLTTHMDQVFVFPNIIRFSWGTVEPFF-EKAVKV 222
Query: 282 E 282
E
Sbjct: 223 E 223
>gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276]
gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276]
Length = 260
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 145/238 (60%), Gaps = 21/238 (8%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGPVLGPMVY AYCP + + L+++G DSKAL+ + R + ++ + ++
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPL-SFKPTLESIGFDDSKALSAETRQRLWETF-EVHS 95
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + +SP I +SMLR+ +LN + D+ +GLI+ + G+NV E YVD +GP
Sbjct: 96 PLCYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAP 155
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
++ +L+ IFP + TV K ADS + +VGAASI AKV+RD +
Sbjct: 156 QWQARLTAIFPTIKFTVCPK---------------ADSLFKIVGAASIVAKVTRDRYVHG 200
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV 279
W+ E E GSGYP DP T+ +L ++IDPVFG+ +VRFSW+T +L ++ V
Sbjct: 201 WSEDE----EEVIRGSGYPSDPKTQAYLKKSIDPVFGYKGIVRFSWATIKVLLDKQGV 254
>gi|367054002|ref|XP_003657379.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
gi|347004645|gb|AEO71043.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
Length = 366
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 156/300 (52%), Gaps = 51/300 (17%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK LT R ++ ++C
Sbjct: 59 PCALGVDEAGRGPVLGPMVYGVFYLPLPLSDPLLRAAHHFDDSKVLTPAVRSALMRTLCT 118
Query: 99 E----NAWLGWMVEIISPNVICNSMLR-------RQKYSLNEVSHDAAIGLIRKVIAAGV 147
+A GW V +S I MLR Y+LN + DA + L+R V A GV
Sbjct: 119 PSSDLHASCGWAVTALSARDIGAGMLRPGGGAAGGAAYNLNAQAMDATVALVRAVYARGV 178
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
NVRE+YVDT+GPP +Y+ +L +FP ITVA K ADS YP V AA
Sbjct: 179 NVREIYVDTIGPPAAYQARLERVFPTAKITVAKK---------------ADSLYPCVSAA 223
Query: 208 SICAKVSRDSALKS-WTFQ-------------EGIQIENN--------AWGSGYPGDPVT 245
S+CAKV+RD+AL++ W + EG + E+ AWGSGYP D
Sbjct: 224 SVCAKVTRDAALETLWKARGRAVNGAGVDVGAEGQEQEDKEADDDKGMAWGSGYPSDGRC 283
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
+L ++ PVFG+ RFSW TA +L +A +G + E E T + +FF
Sbjct: 284 VSWLKGHMHPVFGWGPECRFSWGTAKDML--EAAPAKGGGVKVEWPVDEGGDTHRLTDFF 341
>gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88]
gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 154/275 (56%), Gaps = 37/275 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKEN 100
+LG+DEAGRGPVLGPMVY Y P+D + LL ++ DSKALT R +++ +C
Sbjct: 68 ILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKALTPGVRANLMKLLCTPG 127
Query: 101 AWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIA-AGVNVREVY 153
L GW V+++S I + M+R Y+LN + DA I LIR +I ++VREVY
Sbjct: 128 NPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVREVY 187
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL +IFP L ITVA K ADS YP V AAS+ AKV
Sbjct: 188 IDTIGNPATYQQKLEKIFPSLRITVAKK---------------ADSLYPCVSAASVAAKV 232
Query: 214 SRDSALK--SWTFQEGIQIENN-------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD AL E E++ +WGSGYP D +L +N+DP+FG+ R
Sbjct: 233 TRDVALDLCHQAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECR 292
Query: 265 FSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR 299
FSW TA ++L+ ++G D E EN + R
Sbjct: 293 FSWGTAKELLE-----LKGRPKVDWPGEEENTQLR 322
>gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii]
Length = 266
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 138/236 (58%), Gaps = 25/236 (10%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PC+LG+DEAGRGPVLGPMVY A+ + + + G ADSK LT + R+ + +I +
Sbjct: 35 PCILGVDEAGRGPVLGPMVYACAFTSVSTD---ISSRGYADSKTLTHETREKLFKAIDAD 91
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ +GW+ I+S I ML R K SLN ++ DA +IR+ + +G NV YVDTVG
Sbjct: 92 SG-VGWVAHIMSAQFISGHMLGRDKTSLNALAFDATCAIIRRALESGANV---YVDTVGD 147
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ ++ +LS FP L TV KADS YP+ V AASI AKV RD +L
Sbjct: 148 ADRHRDRLSRAFPGLDFTVCPKADSLYPI---------------VSAASIVAKVIRDKSL 192
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
G+ E G+GYPGD T +L +++ P++GFP+LVR SW T S++L+
Sbjct: 193 TDSQKSLGLTGEV---GTGYPGDSATTTWLKQHMHPLWGFPRLVRHSWETCSRMLE 245
>gi|378734851|gb|EHY61310.1| ribonuclease H2 subunit A [Exophiala dermatitidis NIH/UT8656]
Length = 340
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 142/252 (56%), Gaps = 28/252 (11%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKKRDDILDSICK 98
PCVLG+DEAGRGPV+GPMVYG Y P + + LL DSK LT R +++ ++C
Sbjct: 53 PCVLGVDEAGRGPVIGPMVYGVYYLPVELQQSLLATAYHFDDSKVLTPAFRANLMKAVCT 112
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK-YSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
L GW ++ +S I ML+ Y+LN + DA + LIR V+ GVNV E+Y
Sbjct: 113 AETDLFKSSGWAIKSLSAQDIGAGMLKNGGCYNLNAQAMDATVELIRGVLDRGVNVTEIY 172
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
VDT+G PE Y+++LS+IFP + ITV KADS +P V AAS+ AKV
Sbjct: 173 VDTIGKPEVYQRRLSQIFPTIKITV---------------EKKADSLFPCVSAASVVAKV 217
Query: 214 SRD----SALKSWTFQ---EGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
+RD + L+++ Q + E WGSGYP D +L IDPV+GF RFS
Sbjct: 218 TRDVSCEALLEAYVQQNPSSSSEEEPVTWGSGYPSDARCVSWLKSAIDPVWGFGNECRFS 277
Query: 267 WSTASKILKEKA 278
W T +L++K
Sbjct: 278 WGTVKDMLEQKG 289
>gi|380488296|emb|CCF37475.1| ribonuclease HII [Colletotrichum higginsianum]
Length = 341
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 147/274 (53%), Gaps = 29/274 (10%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
P LG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK LT R ++ ++C
Sbjct: 64 PVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMTALCT 123
Query: 99 ENAWL----GWMVEIISPNVICNSMLRR-QKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+ L G+ + +S I + M+R Y+LN + DA + LI+ V A GVNV+E+Y
Sbjct: 124 AGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNVQEIY 183
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
VDTVG P +Y+ KL FP ITV K ADS YP V AAS+CAKV
Sbjct: 184 VDTVGQPAAYQAKLQRFFPATKITVEKK---------------ADSLYPCVSAASVCAKV 228
Query: 214 SRDSALKSWTFQEGIQI--ENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
SRD+AL+ + E AWGSGYP D ++ N+ PVFG+ RFSW TA
Sbjct: 229 SRDAALEVLYKARAPESAEEGMAWGSGYPSDGRCVSWMRSNMHPVFGWGPECRFSWGTAK 288
Query: 272 KILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
+L K L ++D+ + T + +FF
Sbjct: 289 DMLDGKGALKVDWPVEDDGD------TARMTDFF 316
>gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
Length = 343
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 174/324 (53%), Gaps = 41/324 (12%)
Query: 26 LIISSTIP-----ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCA 79
+I ST P +S + PCVLG+DEAGRGPVLGPMVY Y P + LL +
Sbjct: 37 VITPSTTPLTSSKDSIEPTPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFD 96
Query: 80 DSKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHD 133
DSK LT R +++ +C + L GW V+++S I MLR + Y+LN + D
Sbjct: 97 DSKVLTPAVRSNLMHLLCSPDNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMD 156
Query: 134 AAIGLIRKVIA-AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA 192
A LIR ++ GVNVREVY+DT+G PE+Y++KL +FP L ITVA K
Sbjct: 157 ATTELIRCIVEEKGVNVREVYIDTIGNPETYQRKLERVFPSLKITVAKK----------- 205
Query: 193 IASKADSTYPVVGAASICAKVSRDSAL----KSWTFQEGIQIENNA---WGSGYPGDPVT 245
ADS YP V AASICAKV+RD AL ++ Q +++A WGSGYP D
Sbjct: 206 ----ADSLYPSVSAASICAKVTRDVALEICYEALLKQRDTVKQDSATEGWGSGYPSDSKC 261
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
+L ++D +FG+ RFSW TA ++L+ K G +D EE E + + + NFF
Sbjct: 262 VSWLKNDMDTLFGWGYECRFSWGTARELLESKT----GVRVDWPVEEDE--EAQRLTNFF 315
Query: 306 KPKADENVESPVVEERHAFFKESP 329
A + +E ++ + P
Sbjct: 316 SISATRAGNNEENDELRDWYGQRP 339
>gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum]
Length = 303
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 159/280 (56%), Gaps = 24/280 (8%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
+ Q ++GIDEAGRGPVLGP+VYG + P E +K + DSK LTE++R+ + I
Sbjct: 39 RKQSYIMGIDEAGRGPVLGPLVYGACFAPL-KEIETIKKMKFNDSKKLTEQQREQLFIKI 97
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
K +G++ +I +P + M + SL+ +SH +A +IR V+ G NV+E+Y+DT
Sbjct: 98 IKSPDVIGFVSDINTPEYLSEKMCAKMPTSLDVISHGSAFKMIRTVLDRGYNVQELYLDT 157
Query: 157 VGPPESYKKKLSEIFPEL-IITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
VGP Y+ KL FP + I V+SKA DS YP+V A SI AKV R
Sbjct: 158 VGPALKYQTKLQIAFPSIGKIVVSSKA---------------DSIYPIVSAGSIVAKVLR 202
Query: 216 DSALKSWTFQ--EGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTASK 272
D + + +F +G++I + +GSGYP DP TKK+L E+ D VFG+P ++RFSW T
Sbjct: 203 DVLIANTSFAAYQGVEISRD-FGSGYPSDPSTKKWLREHRDNVFGYPDNIIRFSWKTTIN 261
Query: 273 ILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADEN 312
L ++ + +D + K+ RS +FF+ +N
Sbjct: 262 NLASESS-IHWVSLDKQSHYFSTKRKRS--SFFQDNQIDN 298
>gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi]
gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 142/249 (57%), Gaps = 26/249 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEE--LLKNLGCADSKALTEKKRDDILDSICKE 99
V+GIDEAGRGPVLGP+VY +C N + L K DSK LT K R+ I ++ +
Sbjct: 14 VMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIFKTLKEN 73
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR----KVIAAGVNVREVYVD 155
+ + ++ I+ + I + ML R+KY+LN +SHD AI LI+ + G ++EVY+D
Sbjct: 74 SKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYLKEVYID 133
Query: 156 TVGPPESYKKKLSEIFPEL-IITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
TVG P+ Y+ KL E FPE+ I V KAD S YPVVG ASI AKV
Sbjct: 134 TVGDPKKYQAKLQEKFPEIESIVVDKKAD---------------SKYPVVGGASIVAKVK 178
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL-VRFSWSTASKI 273
RD ++ + ++ GSGY D TK FL++ +D VFG+ VRFSWST KI
Sbjct: 179 RDEIVEEI---QSLKYSKLKMGSGYTSDKYTKDFLNKALDKVFGYHHTDVRFSWSTIKKI 235
Query: 274 LKEKAVLVE 282
L + AV VE
Sbjct: 236 LDDSAVSVE 244
>gi|367034558|ref|XP_003666561.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
gi|347013834|gb|AEO61316.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
Length = 381
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 152/314 (48%), Gaps = 65/314 (20%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK-NLGCADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVYG Y P ++ LL+ DSK LT R +L ++C
Sbjct: 60 PCALGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRATHHFDDSKVLTPAVRASLLRTLCT 119
Query: 99 E----NAWLGWMVEIISPNVICNSMLRR--QKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+A GW V +S I MLR Y+LN + DA + LIR+V A GVNVRE+
Sbjct: 120 PSTDLHASCGWAVTALSARDISAGMLRPGLAAYNLNAQAMDATVELIRQVYARGVNVREI 179
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVDT+G P +Y+ KL +FP ITVA K ADS YP V AAS+CAK
Sbjct: 180 YVDTIGQPAAYQAKLERVFPTAKITVAKK---------------ADSLYPCVSAASVCAK 224
Query: 213 VSRDSALKSWTFQEGIQI-----------------------------------------E 231
V+RD AL++ G +
Sbjct: 225 VTRDVALETLWKAPGWKAGQVVGGGEEGEEKDGVEEEKEEERKEDEQQDQEEEQEQAGEA 284
Query: 232 NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEE 291
+ AWGSGYP D +L ++ P+FG+ RFSW TA IL +A +G + +
Sbjct: 285 SMAWGSGYPSDRRCVAWLKASMHPLFGWGPECRFSWGTAKDIL--EAAPAKGGGVKVDWP 342
Query: 292 EGENKKTRSIRNFF 305
E+ T + +FF
Sbjct: 343 ANEDDDTHRLTDFF 356
>gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3]
gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 343
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 172/326 (52%), Gaps = 45/326 (13%)
Query: 26 LIISSTIP-----ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCA 79
+I ST P +S + PCVLG+DEAGRGPVLGPMVY Y P + LL +
Sbjct: 37 VITPSTTPLTSSKDSIEPTPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFD 96
Query: 80 DSKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHD 133
DSK LT R +++ +C + L GW V+++S I MLR + Y+LN + D
Sbjct: 97 DSKVLTPAVRSNLMHLLCSPDNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMD 156
Query: 134 AAIGLIRKVIA-AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA 192
A LIR ++ GVNVREVY+DT+G PE+Y++KL +FP L ITVA K
Sbjct: 157 ATTELIRCIVEEKGVNVREVYIDTIGNPETYQRKLERVFPSLKITVAKK----------- 205
Query: 193 IASKADSTYPVVGAASICAKVSRDSAL---------KSWTFQEGIQIENNAWGSGYPGDP 243
ADS YP V AASICAKV+RD AL + T ++ E WGSGYP D
Sbjct: 206 ----ADSLYPSVSAASICAKVTRDVALEICYEALLKQRDTVKQDSTTE--GWGSGYPSDS 259
Query: 244 VTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
+L ++D +FG+ RFSW TA ++L+ K G +D EE E + + + N
Sbjct: 260 KCVSWLKNDMDTLFGWGYECRFSWGTARELLESKT----GVRVDWPVEEDE--EAQRLTN 313
Query: 304 FFKPKADENVESPVVEERHAFFKESP 329
FF A + +E ++ + P
Sbjct: 314 FFSISATRAGNNEENDELRDWYGQRP 339
>gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
Length = 343
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 164/313 (52%), Gaps = 44/313 (14%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTE 86
+S + S + PCVLG+DEAGRGPVLGPM+Y Y P + LL K DSK LT
Sbjct: 44 LSKAVDGSIERTPCVLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTP 103
Query: 87 KKRDDILDSICKE----NAWLGWMVEIISPNVICNSMLRRQ--KYSLNEVSHDAAIGLIR 140
R +++ +C N GW V+++S I MLR Y+LN + DA I LI
Sbjct: 104 AVRTNLMRLLCTPDHSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELII 163
Query: 141 KVI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
++ GVNV+EVY+DT+G PE+Y+KKL IFP L ITV K ADS
Sbjct: 164 CIVEKMGVNVKEVYIDTIGNPETYQKKLKRIFPALKITVTKK---------------ADS 208
Query: 200 TYPVVGAASICAKVSRDSAL----KSWTFQEGIQIENNA---WGSGYPGDPVTKKFLSEN 252
YP V AAS+CAKV+RD AL ++ Q G + A WGSGYP D +L +
Sbjct: 209 LYPSVSAASVCAKVTRDVALELCYEALVKQRGAMEQEGAADGWGSGYPSDSKCVGWLKND 268
Query: 253 IDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEE--------------EGENKKT 298
+D +FG+ RFSW TA ++L+ K + +D++ E G N KT
Sbjct: 269 MDSLFGWGNECRFSWGTARELLESKRGIKVDWPVDEDNEAQLLTNFFSFSGSGAGFNDKT 328
Query: 299 RSIRNFFKPKADE 311
+R+++ + E
Sbjct: 329 EELRDWYGQRLQE 341
>gi|350636009|gb|EHA24370.1| hypothetical protein ASPNIDRAFT_209236 [Aspergillus niger ATCC
1015]
Length = 352
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/275 (40%), Positives = 153/275 (55%), Gaps = 37/275 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKEN 100
+LG+DEAGRGPVLGPMVY Y P+D + LL ++ DSK LT R +++ +C
Sbjct: 68 ILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKVLTPGVRANLMKLLCTPG 127
Query: 101 AWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIA-AGVNVREVY 153
L GW V+++S I + M+R Y+LN + DA I LIR +I ++VREVY
Sbjct: 128 NPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVREVY 187
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL +IFP L ITVA K ADS YP V AAS+ AKV
Sbjct: 188 IDTIGNPATYQQKLEKIFPSLRITVAKK---------------ADSLYPCVSAASVAAKV 232
Query: 214 SRDSALK--SWTFQEGIQIENN-------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD AL E E++ +WGSGYP D +L +N+DP+FG+ R
Sbjct: 233 TRDVALDLCHQAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECR 292
Query: 265 FSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR 299
FSW TA ++L+ ++G D E EN + R
Sbjct: 293 FSWGTAKELLE-----LKGRPKVDWPGEEENTQLR 322
>gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871226|gb|EIT80391.1| ribonuclease HI [Aspergillus oryzae 3.042]
Length = 363
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 156/297 (52%), Gaps = 42/297 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKEN 100
VLG+DEAGRGPVLGPMVY Y P D + LL ++ DSK LT R +++ +C
Sbjct: 80 VLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTPG 139
Query: 101 AWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVIAA-GVNVREVY 153
L GW +++S I + M+R Y+LN + DA + LIR+++ V++REVY
Sbjct: 140 TPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVY 199
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL IFP L ITVA K ADS YP V AAS+ AKV
Sbjct: 200 IDTIGNPATYQQKLERIFPSLKITVAKK---------------ADSLYPCVSAASVAAKV 244
Query: 214 SRDSAL--------KSWTFQEGIQ-IENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD AL K+ F + Q +WGSGYP D +L N+DP+FG+ R
Sbjct: 245 TRDVALELCHEDIVKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECR 304
Query: 265 FSWSTASKILKEKAVLVEGDEIDDE----------EEEGENKKTRSIRNFFKPKADE 311
FSW T+ ++L+ K + DDE E + +R++F K E
Sbjct: 305 FSWGTSKEMLEMKGGVKVDWPPDDENTQLRDFLLTSSEAPKGTNQELRDWFGQKTTE 361
>gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40]
Length = 351
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 156/297 (52%), Gaps = 42/297 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKEN 100
VLG+DEAGRGPVLGPMVY Y P D + LL ++ DSK LT R +++ +C
Sbjct: 68 VLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTPG 127
Query: 101 AWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVIAA-GVNVREVY 153
L GW +++S I + M+R Y+LN + DA + LIR+++ V++REVY
Sbjct: 128 TPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVY 187
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL IFP L ITVA K ADS YP V AAS+ AKV
Sbjct: 188 IDTIGNPATYQQKLERIFPSLKITVAKK---------------ADSLYPCVSAASVAAKV 232
Query: 214 SRDSAL--------KSWTFQEGIQ-IENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD AL K+ F + Q +WGSGYP D +L N+DP+FG+ R
Sbjct: 233 TRDVALELCHEDIVKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECR 292
Query: 265 FSWSTASKILKEKAVLVEGDEIDDE----------EEEGENKKTRSIRNFFKPKADE 311
FSW T+ ++L+ K + DDE E + +R++F K E
Sbjct: 293 FSWGTSKEMLEMKGGVKVDWPPDDENTQLRDFLLTSSEAPKGTNQELRDWFGQKTTE 349
>gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
Length = 362
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 164/298 (55%), Gaps = 39/298 (13%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKK 88
S++ E S+ VLG+DEAGRGPVLGPMVY Y P + LL ++ DSK LT
Sbjct: 67 SSLSEHGSSEYFVLGVDEAGRGPVLGPMVYSAFYLPHTLHHSLLARDYSFDDSKVLTAGV 126
Query: 89 RDDILDSICKE----NAWLGWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKV 142
R +++ +C +A GW +++S I + M+R Y+LN + DA + +IR +
Sbjct: 127 RANLMRLLCTAGNPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGI 186
Query: 143 IAA-GVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
+ V+VREVY+DT+G P +Y++KL IFP L ITVA K ADS Y
Sbjct: 187 VEERKVDVREVYIDTIGNPATYQQKLERIFPTLKITVAKK---------------ADSLY 231
Query: 202 PVVGAASICAKVSRDSALKSW--TFQEGIQIE------NNAWGSGYPGDPVTKKFLSENI 253
P V AAS+ AKV+RD AL+ FQ Q+E ++WGSGYP D +L +++
Sbjct: 232 PCVSAASVAAKVTRDVALELCHDAFQALQQLETSHEMATDSWGSGYPSDSKCVNWLRKHM 291
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
DPVFG+ RFSW T+ ++L+ K G +D EE ++ I++F A+
Sbjct: 292 DPVFGWGNECRFSWGTSKEMLELKG----GTRVDWPVEE----ESTQIKDFLLTTANH 341
>gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03]
Length = 343
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 166/307 (54%), Gaps = 44/307 (14%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTE 86
++ T+ S + PCVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT
Sbjct: 44 LTETLDGSMEPTPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTP 103
Query: 87 KKRDDILDSICKE----NAWLGWMVEIISPNVICNSMLRRQ--KYSLNEVSHDAAIGLIR 140
R +++ +C N GW V+++S I MLR Y+LN + DA I LI
Sbjct: 104 AVRTNLMRLLCTPDHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELII 163
Query: 141 KVI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
++ GVNV+EVY+DTVG PE+Y+KKL IFP L ITV K ADS
Sbjct: 164 CIVEKMGVNVKEVYIDTVGNPETYQKKLKRIFPALKITVTKK---------------ADS 208
Query: 200 TYPVVGAASICAKVSRDSAL----KSWTFQEGIQIENNA---WGSGYPGDPVTKKFLSEN 252
YP V AAS+CAKV+RD AL ++ Q G + A WGSGYP D +L +
Sbjct: 209 LYPSVSAASVCAKVTRDVALELCYEALVKQRGAMEQEGAADGWGSGYPSDSKCVGWLKND 268
Query: 253 IDPVFGFPQLVRFSWSTASKILKE-KAVLVEGDEIDDEEEE-------------GENKKT 298
+D +FG+ RFSW TA ++L+ + + V+ +D+E + G N+KT
Sbjct: 269 MDSLFGWGNECRFSWGTARELLESNRGIKVDWPVDEDDEAQLLTDFFSFSRSGAGSNEKT 328
Query: 299 RSIRNFF 305
+R+++
Sbjct: 329 DELRDWY 335
>gi|346972898|gb|EGY16350.1| ribonuclease H2 subunit A [Verticillium dahliae VdLs.17]
Length = 351
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 156/297 (52%), Gaps = 42/297 (14%)
Query: 28 ISSTIPE--SCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKAL 84
+SS +PE + S LGIDEAGRGPVLGPM Y Y P ++ LL+ DSK L
Sbjct: 54 VSSAVPELAAADSPAVCLGIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVL 113
Query: 85 TEKKRDDILDSICKEN----AWLGWMVEIISPNVICNSMLRR-QKYSLNEVSHDAAIGLI 139
T R ++ ++C + A G+ V +S I + ML Y+LN + DA + +I
Sbjct: 114 TPAVRSALMRALCSPSTDLAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEII 173
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ VIA GV V E+YVDTVG P +Y+ KL +FP + ITVA K ADS
Sbjct: 174 KGVIARGVRVEEIYVDTVGQPAAYQAKLQRVFPSVKITVAKK---------------ADS 218
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENN-----------AWGSGYPGDPVTKKF 248
YP V AAS+CAKV+RD+AL+ E + N AWGSGYP D +
Sbjct: 219 LYPCVSAASVCAKVTRDAALE--VMYEAHKAANGGHAGTEDGEGMAWGSGYPSDARCVSW 276
Query: 249 LSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
L N+ PVFG+ RFSW TA +L K G ++D +E E+ T + ++F
Sbjct: 277 LRGNMHPVFGWGSECRFSWGTAKDMLDGKG----GVKVDWPVDETED--TNRMTDYF 327
>gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818]
Length = 361
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 174/321 (54%), Gaps = 49/321 (15%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKK 88
ST + + PCVLGIDEAGRGPVLGPMVY Y P ++ LL + DSK LT +
Sbjct: 56 STEEKKAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEV 115
Query: 89 RDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRK 141
R +++ S+C + L GW V+++S I + MLR Y+LN + DA I +IR
Sbjct: 116 RSNLMRSLCTKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRG 175
Query: 142 VIAAG-VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V+ ++V+EVYVDT+G PE+++ +L +FP L ITVA KA DS
Sbjct: 176 VVETQRIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKKA---------------DSL 220
Query: 201 YPVVGAASICAKVSRDSAL----KSWTFQEGIQI-------------ENNAWGSGYPGDP 243
YP V AAS+CAKV+RD+AL +SW Q Q E WGSGYP D
Sbjct: 221 YPCVSAASVCAKVTRDAALEACYESWLNQREKQKTLATGEDKTATAEEILTWGSGYPSDG 280
Query: 244 VTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
+L ++++ +FG+ RFSW T+ ++L+ K+ G ++D EE ++ +
Sbjct: 281 KCVGWLKKDMNRLFGWGAECRFSWGTSKELLEVKS----GLKVDWPAEEDDS--IMLVTQ 334
Query: 304 FFKPKADENVESPVVEERHAF 324
+F K++ E PV E R +
Sbjct: 335 YFTSKSE--TEGPVNELRDWY 353
>gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
Length = 386
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 153/293 (52%), Gaps = 49/293 (16%)
Query: 31 TIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKR 89
T ++ K CVLG+DEAGRGPVLGPMVY Y PKD + LL + DSK LT R
Sbjct: 75 TTDDTNKPTECVLGVDEAGRGPVLGPMVYSAFYLPKDLEQSLLTQEHSFDDSKVLTPVVR 134
Query: 90 DDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVI 143
++ SIC L GW V+++S I M+R Y+LN + DA + +IR V+
Sbjct: 135 AQLMQSICTPGQSLHDSCGWAVKLLSARDISAGMMRPGMGIYNLNAQAMDATVEIIRGVL 194
Query: 144 -AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
+NV E+Y+DT+G P +Y+ KL +FP L ITVA K ADS YP
Sbjct: 195 NDKHINVTEIYIDTIGNPATYQAKLQRLFPTLSITVAKK---------------ADSLYP 239
Query: 203 VVGAASICAKVSRDSALKSWT---FQEGIQ----------------------IENNAWGS 237
V AAS+ AKV+RD AL+S +QE Q +E WGS
Sbjct: 240 CVSAASVVAKVTRDVALESCYRAFYQEPSQKTVDGDTNMMESSETIPPSVSKVEELGWGS 299
Query: 238 GYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK-AVLVEGDEIDDE 289
GYP D +L +N+D VFG+ RFSW TA ++L K AV V+ +DE
Sbjct: 300 GYPSDSKCVNWLRQNMDSVFGWGNECRFSWGTAKEMLDGKDAVRVDWPADEDE 352
>gi|453087271|gb|EMF15312.1| ribonuclease H-like protein [Mycosphaerella populorum SO2202]
Length = 374
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 155/311 (49%), Gaps = 57/311 (18%)
Query: 30 STIPESCK---SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALT 85
S IP++ + + CVLGIDEAGRGPVLGPMVYG Y P + LL + DSK LT
Sbjct: 46 SAIPQAIREDMTTECVLGIDEAGRGPVLGPMVYGLFYLPTTFHHTLLTQTYKFNDSKLLT 105
Query: 86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRR----------------QKY 125
R ++ IC L GW + +S I +SMLR Q
Sbjct: 106 PTFRSHLMQQICSPETPLYTHCGWAIRSLSAQDISSSMLRPTHTPFTSTSGAINATPQIS 165
Query: 126 SLNEVSHDAAIGLIRKVIA-AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADS 184
+LN + +A I LI +++ +N++ +Y+DT+G PE Y+ KL +IFP + ITVA K
Sbjct: 166 NLNNQAIEATITLIHQILYDLKINIQHIYIDTIGKPEIYQAKLEKIFPAVKITVAKK--- 222
Query: 185 TYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEG---------------IQ 229
ADS +P V AAS+CAKV+RD+AL+ +
Sbjct: 223 ------------ADSLFPCVSAASVCAKVTRDAALEVLYMKSAEEEERRRRNDSAEVKTT 270
Query: 230 IENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV--LVEGDEID 287
AWGSGYP D +L N+DPVFG+ RFSW TA ++L+ + V+ E D
Sbjct: 271 TTTMAWGSGYPSDVRCANWLKNNMDPVFGWGNECRFSWGTAKELLEVRGAPCRVDWPEAD 330
Query: 288 DEEEEGENKKT 298
D EE K T
Sbjct: 331 DAEENDNMKLT 341
>gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18]
Length = 343
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 166/313 (53%), Gaps = 44/313 (14%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTE 86
++ T+ S + PCVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT
Sbjct: 44 LTETLDGSMEPTPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTP 103
Query: 87 KKRDDILDSICKE----NAWLGWMVEIISPNVICNSMLRRQ--KYSLNEVSHDAAIGLIR 140
R +++ +C N GW V+++S I MLR Y+LN + DA I LI
Sbjct: 104 AVRTNLMRLLCTPDHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELII 163
Query: 141 KVI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
++ GVNV+EVY+DTVG PE+Y+KKL IFP L ITV K ADS
Sbjct: 164 CIVEKMGVNVKEVYIDTVGNPETYQKKLKRIFPALKITVTKK---------------ADS 208
Query: 200 TYPVVGAASICAKVSRDSAL----KSWTFQEGIQIENNA---WGSGYPGDPVTKKFLSEN 252
YP V AAS+CAKV+RD AL ++ Q G + A WGSGYP D +L +
Sbjct: 209 LYPSVSAASVCAKVTRDVALELCYEALVKQRGAMEQEGAADGWGSGYPSDSKCVGWLKND 268
Query: 253 IDPVFGFPQLVRFSWSTASKILKE-KAVLVEGDEIDDEEEE-------------GENKKT 298
+D +FG+ RFSW TA ++L+ + + V+ +D E + G N+K
Sbjct: 269 MDSLFGWGNECRFSWGTARELLESNRGIKVDWPVDEDVEAQLLTDFFSFSRSGAGSNEKA 328
Query: 299 RSIRNFFKPKADE 311
+R+++ + E
Sbjct: 329 DELRDWYGQRLQE 341
>gi|396458422|ref|XP_003833824.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
Length = 357
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 164/312 (52%), Gaps = 51/312 (16%)
Query: 30 STIPESCK---SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALT 85
S IP+ S VLG+DEAGRGPVLGPMVY Y P + LL + DSK LT
Sbjct: 45 SPIPQQIADDMSTEVVLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLT 104
Query: 86 EKKRDDILDSICKE----NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK 141
R ++ ++C +A GW +S I ML Y+LN + DA I LI+
Sbjct: 105 ADFRTSLMRTLCTPSTDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKG 164
Query: 142 VIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
V+ GVNV ++Y+DT+G PE Y+KKL I+P + ITVA KADS YP
Sbjct: 165 VLEKGVNVTDIYIDTIGKPEIYQKKLERIWPTIRITVAKKADSLYP-------------- 210
Query: 202 PVVGAASICAKVSRDSALK------------------SWTFQEGIQIENN-----AWGSG 238
VV AAS+CAKV+RD+AL+ + Q ++ +WGSG
Sbjct: 211 -VVSAASVCAKVTRDAALEVGYGKYHDHDHSHSQSSSTDVLNAQTQTQDPVKATVSWGSG 269
Query: 239 YPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKT 298
YP DP T+ +L +N+DPVFG+ R SW TA ++L+ K V G E E+EG++ +
Sbjct: 270 YPSDPRTQAWLKQNMDPVFGWGTECRHSWGTAKELLEGKKADV-GVEW-PVEDEGDDMR- 326
Query: 299 RSIRNFFKPKAD 310
+ +FF K +
Sbjct: 327 --LTDFFVGKGE 336
>gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
Length = 368
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 151/293 (51%), Gaps = 46/293 (15%)
Query: 31 TIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKR 89
T +S K CVLG+DEAGRGPVLGPMVY Y PK LL + DSK LT R
Sbjct: 61 TTNDSNKPTECVLGVDEAGRGPVLGPMVYSAFYLPKHLERPLLTEEYSFDDSKVLTPVVR 120
Query: 90 DDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVI 143
++ SIC A L GW V+++S I M+R Y+LN + DA I +IR V+
Sbjct: 121 ARLMQSICTPGASLHDSCGWAVKLLSARDISAGMMRPSTGVYNLNAQAMDATIEIIRGVL 180
Query: 144 -AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
+NV EVY+DT+G P +Y+ KL +FP L ITVA K ADS YP
Sbjct: 181 NEKHINVTEVYIDTIGNPATYQAKLQRLFPTLSITVAKK---------------ADSLYP 225
Query: 203 VVGAASICAKVSRDSALKSWTFQEGIQIENN----------------------AWGSGYP 240
V AAS+ AKV+RD AL+S +Q Q E + WGSGYP
Sbjct: 226 CVSAASVVAKVTRDVALES-CYQAFYQQEPSQDVEDTDMKDSETTPATKKEAAGWGSGYP 284
Query: 241 GDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEG 293
D +L +N+D VFG+ RFSW TA ++L+ K + D+++ G
Sbjct: 285 SDSKCVNWLRQNMDSVFGWGNECRFSWGTAKEMLEGKDAIRVDWPADEDDGAG 337
>gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens]
Length = 229
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 138/247 (55%), Gaps = 21/247 (8%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAY---CPKDNNEELLKNLGCADSKALTEKKR 89
P + + LGIDEAGRGPVLG M +GT Y D E K + DSK LT++KR
Sbjct: 1 PSVRRGEAVKLGIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEID--DSKQLTDEKR 58
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D I + +GW VE++S I ML+ + SLN +S DA LI++V+ G +V
Sbjct: 59 SKLFDRIAADER-MGWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADV 117
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
E +VDTVG P+SY ++L+ F I +A KAD+ Y GAASI
Sbjct: 118 VEAFVDTVGNPDSYSERLTRAFDGKIKFT--------------VAKKADALYKCTGAASI 163
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
CAKV RD ++ WT+ E +++ +GSGYP DP +L+ N+ VFG+P RFSW+
Sbjct: 164 CAKVCRDLSIARWTYDEP-GVDDLDFGSGYPSDPACVAWLARNVHGVFGYPNFCRFSWAP 222
Query: 270 ASKILKE 276
A L++
Sbjct: 223 AKARLRD 229
>gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97]
Length = 323
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 155/277 (55%), Gaps = 41/277 (14%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKK 88
ST + + PCVLGIDEAGRGPVLGPMVY Y P ++ LL + DSK LT +
Sbjct: 56 STEEKKAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEV 115
Query: 89 RDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRK 141
R +++ S+C + L GW V+++S I + MLR Y+LN + DA I +IR
Sbjct: 116 RSNLMRSLCTKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRG 175
Query: 142 VI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V+ ++V+EVYVDT+G PE+++ +L +FP L ITVA K ADS
Sbjct: 176 VVETQRIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKK---------------ADSL 220
Query: 201 YPVVGAASICAKVSRDSAL----KSWTFQEGIQI-------------ENNAWGSGYPGDP 243
YP V AAS+CAKV+RD+AL +SW Q Q E WGSGYP D
Sbjct: 221 YPCVSAASVCAKVTRDAALEACYESWLNQREKQKTLATGEDKTATAEEILTWGSGYPSDG 280
Query: 244 VTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
+L ++++ +FG+ RFSW T+ ++L+ K+ L
Sbjct: 281 KCVGWLKKDMNRLFGWGAECRFSWGTSKELLEVKSGL 317
>gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|374108444|gb|AEY97351.1| FAER363Wp [Ashbya gossypii FDAG1]
Length = 304
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 143/250 (57%), Gaps = 26/250 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK-EN 100
+LG+DEAGRGPVLGPMVY AYC +++ G DSK LT+ R + IC E
Sbjct: 37 ILGVDEAGRGPVLGPMVYAVAYCTVSYEATIVRQHGFDDSKKLTDAVRRTLFGKICAAEL 96
Query: 101 AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
A +G+ +SP I + MLR + Y+LNE +HD I LI+ V+ AGV V VYVDTV
Sbjct: 97 AGIGFATTGLSPAAISSGMLRYPPTKNYNLNEQAHDTTIALIQGVLDAGVRVEHVYVDTV 156
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
GPP +Y+ KL + FP ITVA KADST+PVV A AKV+RD
Sbjct: 157 GPPLAYQAKLQQRFPACKITVAKKADSTFPVVSVASVV---------------AKVTRDV 201
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF-PQLVRFSWSTASKILK- 275
L + ++ GSGYPGD T +L P+FG+ P+LVRFSW T +L+
Sbjct: 202 WLHALR-----PTPDDVLGSGYPGDQKTVAWLHRECRPLFGWSPELVRFSWQTCRTLLES 256
Query: 276 EKAVLVEGDE 285
+KA+ +E +E
Sbjct: 257 DKAIRIEWEE 266
>gi|392578857|gb|EIW71984.1| hypothetical protein TREMEDRAFT_26073 [Tremella mesenterica DSM
1558]
Length = 272
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 140/246 (56%), Gaps = 26/246 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRG + GPMVY A CP + L+ +G DSKAL+ + R ++ D +++
Sbjct: 34 IMGIDEAGRGHI-GPMVYAAALCPI-KFKSTLEEMGFDDSKALSPETRQNLWDKF-EDHP 90
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + +SP I +MLRR +LN + DA +GL++ + G+ V E YVD +GP
Sbjct: 91 ELCYSSATLSPQAISANMLRRIPVNLNRQAEDATVGLVQAALDRGIKVTECYVDALGPAP 150
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
++ +LS +FP + TV KADS + +V AASI AKV+RD +++
Sbjct: 151 QWQARLSSLFPTISFTV---------------CPKADSLFKIVSAASIIAKVTRDRYIEN 195
Query: 222 W------TFQEGIQIENN--AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
W E + N +WGSGYP DP T+ FL EN+DPVFG+ VRFSW+T +
Sbjct: 196 WLDWETSKSHESLSFNQNGFSWGSGYPSDPRTQAFLKENLDPVFGYTGAVRFSWATVKVL 255
Query: 274 LKEKAV 279
L + AV
Sbjct: 256 LDKNAV 261
>gi|407042272|gb|EKE41240.1| ribonuclease HII protein [Entamoeba nuttalli P19]
Length = 270
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVY + N E++ +G DSK L+ R+ + I KE+A
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFF---TTNTEVISTMGFHDSKILSRTMREKLFTDI-KESAV 72
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPE 161
G+ I++P+ I M QK SLNE++ A +I ++I + + +Y DTVGP +
Sbjct: 73 CGFSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSK 132
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ ++ F E+ ++ + + KAD YPVV AASICAKV+RD+ L +
Sbjct: 133 KYQAMIANEFKEVKLSQIT------------VCPKADGLYPVVSAASICAKVTRDTCLDN 180
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
W ++E I+ G GYP D T K++ DP+FG+P LVRF W T+ +I++EK
Sbjct: 181 WIYEE-TNIQTRQVGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETSKRIIEEKV 236
>gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
Length = 363
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 161/305 (52%), Gaps = 41/305 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKE- 99
VLG+DEAGRGPVLGPMVY Y P + LL ++ DSK LT R +++ +C
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 100 ---NAWLGWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIA-AGVNVREVY 153
+A GW +++S I M+R Y+LN + DA + +IR ++ V++REVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL IFP L ITVA K AD+ YP V AAS+ AKV
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKK---------------ADALYPCVSAASVVAKV 242
Query: 214 SRDSALK-----SWTFQE----GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD AL+ + Q + + ++WGSGYP D +L ++DP+FG+ R
Sbjct: 243 TRDVALEFCHEAVYGLQRSEAPSLGVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECR 302
Query: 265 FSWSTASKILKEKAVLVEGDEID-DEEEEGENKKTRSIRNFFKPKADENVESPVVEERHA 323
FSW TA ++L+ K G +D EEEG T I++F A + E R
Sbjct: 303 FSWGTAKEMLELKG----GTRVDWPVEEEG----TAPIKDFLLTTARNAKRTEQDELREW 354
Query: 324 FFKES 328
F + S
Sbjct: 355 FGRRS 359
>gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 312
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 160/299 (53%), Gaps = 39/299 (13%)
Query: 30 STIPESCK----SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKAL 84
S IPE K S P +LG+DEAGRGPV+GPMVYG +YC K+ + L+ DSK L
Sbjct: 22 SEIPEVIKNGVSSSPVILGVDEAGRGPVMGPMVYGISYCTKEYQDTVLIPKYAFDDSKKL 81
Query: 85 TEKKRDDILDSICKENA---------WLGWMVEIISPNVICNSMLR---RQKYSLNEVSH 132
T+ R ++ + +N +G+ I+P I + MLR Q Y+LNE +H
Sbjct: 82 TDNIRRNLFSKMYDQNGDGTGEIEIDGVGYATTAITPVDISSGMLRYPPSQNYNLNEQAH 141
Query: 133 DAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA 192
D + LI+ ++ GV + VYVDTVGPP SY+KKL FP + TVA KADS Y VV A
Sbjct: 142 DVTMNLIQGLVEKGVTIDHVYVDTVGPPVSYQKKLETRFPNIKFTVAKKADSLYCVVSVA 201
Query: 193 IASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSEN 252
AKV+RD L ++ EN GSGYP DP T +L++N
Sbjct: 202 SVV---------------AKVTRDIIL-----EQMKSNENEILGSGYPSDPKTTAWLAKN 241
Query: 253 IDPVFGFPQ-LVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKAD 310
+F +PQ LVRFSW T ++KE + I+ EE+ +KK S + + KPK D
Sbjct: 242 QKQLFAWPQSLVRFSWQTCQTLIKEDKHKIGMVPIEWEEDYINSKKNMS-KQWTKPKTD 299
>gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 326
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 163/318 (51%), Gaps = 56/318 (17%)
Query: 23 SRNLIISSTIP--ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
S + + S++P E + ++GIDEAGRGPVLGPMVY AYCP + + +L+++G D
Sbjct: 17 SDSYVFHSSLPAAEQTPGEGWIMGIDEAGRGPVLGPMVYAAAYCPL-SFKPILESIGFDD 75
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SKAL+ + R + +S L + +SP I ++MLR+ +LN + DA +GLI+
Sbjct: 76 SKALSAETRQTLWESFDVHPP-LCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQ 134
Query: 141 KVIAAGVNVREV------------------YVDTVGPPESYKKKLSEIFPELIITVASKA 182
+ G+NV E YVD +GP ++ +L+ IFP + TV KA
Sbjct: 135 AALNRGINVTEASFSCSLAASCWLTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKA 194
Query: 183 DSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGI----------QIEN 232
DS + +VGAA SI AKV+RD + W E + E
Sbjct: 195 DSLFKIVGAA---------------SIVAKVTRDRYVHGWVDPEDVIHSATHIKSQDEEE 239
Query: 233 NAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEE 292
GSGYP DP T+ +L +IDPVFG+ +VRFSW+T +L ++ VE IDD +
Sbjct: 240 VIRGSGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWATVKVLLDKQG--VESKWIDDTTQ- 296
Query: 293 GENKKTRSIRNFFKPKAD 310
RS N+F AD
Sbjct: 297 ------RSAANWFAADAD 308
>gi|11387103|sp|Q9P5X8.1|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa]
Length = 317
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 157/281 (55%), Gaps = 36/281 (12%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVY Y P ++ LLK DSK LT R ++ +C
Sbjct: 43 PCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCT 102
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRKVIAAGVNVRE 151
++ L G+ +SP I + ML+ K Y+LN+ + DA I LI+ + GVNV +
Sbjct: 103 KDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNVTD 162
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+++DT+G P +Y+KKL +FP ITVA KA DS YPVV AAS+ A
Sbjct: 163 IFIDTIGQPAAYQKKLERVFPTAKITVAKKA---------------DSLYPVVSAASVVA 207
Query: 212 KVSRDSALKS-WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
KV+RD AL+ W + AWGSGYP D +L +N+ PVFG+ RFSW TA
Sbjct: 208 KVTRDIALEVLWADR------TMAWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA 261
Query: 271 SKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
+L+ K G ++D E E ++T+ + +FF K D+
Sbjct: 262 KDMLETKG----GVKVD--WPEEEEEETQKLTDFFMAKRDQ 296
>gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163]
Length = 363
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 161/305 (52%), Gaps = 41/305 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKE- 99
VLG+DEAGRGPVLGPMVY Y P + LL ++ DSK LT R +++ +C
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 100 ---NAWLGWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIA-AGVNVREVY 153
+A GW +++S I M+R Y+LN + DA + +IR ++ V++REVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL IFP L ITVA K AD+ YP V AAS+ AKV
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKK---------------ADALYPCVSAASVVAKV 242
Query: 214 SRDSALK-----SWTFQE----GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD AL+ + Q +++ ++WGSGYP D +L ++DP+FG+ R
Sbjct: 243 TRDMALEFCHEAVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECR 302
Query: 265 FSWSTASKILKEKAVLVEGDEID-DEEEEGENKKTRSIRNFFKPKADENVESPVVEERHA 323
FSW TA ++L+ K G +D EEEG I++F A + E R
Sbjct: 303 FSWGTAKEMLELKG----GTRVDWPVEEEGAAP----IKDFLLTTARNAKRTEQDELREW 354
Query: 324 FFKES 328
F + S
Sbjct: 355 FGRRS 359
>gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
Length = 363
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 150/270 (55%), Gaps = 37/270 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICKE- 99
VLG+DEAGRGPVLGPMVY Y P + LL ++ DSK LT R +++ +C
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 100 ---NAWLGWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIA-AGVNVREVY 153
+A GW +++S I M+R Y+LN + DA + +IR ++ V++REVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+DT+G P +Y++KL IFP L ITVA K AD+ YP V AAS+ AKV
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKK---------------ADALYPCVSAASVVAKV 242
Query: 214 SRDSALK-----SWTFQE----GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
+RD AL+ + Q +++ ++WGSGYP D +L ++DP+FG+ R
Sbjct: 243 TRDMALEFCHEAVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECR 302
Query: 265 FSWSTASKILKEKAVLVEGDEID-DEEEEG 293
FSW TA ++L+ K G +D EEEG
Sbjct: 303 FSWGTAKEMLELKG----GTRVDWPVEEEG 328
>gi|405122261|gb|AFR97028.1| ribonuclease HI large subunit [Cryptococcus neoformans var. grubii
H99]
Length = 326
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 160/316 (50%), Gaps = 56/316 (17%)
Query: 25 NLIISSTIP--ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
+ + S +P E + ++GIDEAGRGPVLGPMVY AYCP + + +L+++G DSK
Sbjct: 19 SYVFHSALPAAERTSGEGWIMGIDEAGRGPVLGPMVYAAAYCPL-SFKSILESIGFDDSK 77
Query: 83 ALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV 142
AL+ + R + S L + +SP I ++MLR+ +LN + DA + LI+
Sbjct: 78 ALSAETRQTLWKSFDVHPP-LCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVDLIQTA 136
Query: 143 IAAGVNVREV------------------YVDTVGPPESYKKKLSEIFPELIITVASKADS 184
+ G+NV E YVD +GP ++ +L+ IFP + TV KADS
Sbjct: 137 LNRGINVTEASFSCSLEASCWLTISLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADS 196
Query: 185 TYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGI----------QIENNA 234
+ +VGA ASI AKV+RD + W E + E
Sbjct: 197 LFKIVGA---------------ASIVAKVTRDRYVHGWVDPEDVVHGATDIKSQDEEEVI 241
Query: 235 WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGE 294
GSGYP DP T+ +L E+IDPVFG+ +VRFSW+T +L ++ VE IDD +
Sbjct: 242 RGSGYPSDPKTQAYLKESIDPVFGYKGIVRFSWATVKVLLDKQG--VESKWIDDTTQ--- 296
Query: 295 NKKTRSIRNFFKPKAD 310
RS N+F AD
Sbjct: 297 ----RSAANWFSADAD 308
>gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS]
gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708100|gb|EMD47623.1| rnase HI large subunit, putative [Entamoeba histolytica KU27]
Length = 270
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 18/237 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVY + N E++ +G DSK L+ R+ + I KE+
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFF---TTNTEVISTMGFHDSKILSRTMREKLFTDI-KESGV 72
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPE 161
G+ I++P+ I M QK SLNE++ A +I ++I + + +Y DTVGP +
Sbjct: 73 CGFSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSK 132
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ ++ F E+ ++ + + KAD YPVV AASICAKV+RD+ L +
Sbjct: 133 KYQAMIANEFKEVKLSQIT------------VCPKADGLYPVVSAASICAKVTRDTCLDN 180
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
W ++E I+ G GYP D T K++ DP+FG+P LVRF W T+ +I++EK
Sbjct: 181 WIYEE-TNIQTRQVGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETSKRIIEEKV 236
>gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR]
Length = 341
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 158/282 (56%), Gaps = 38/282 (13%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICK 98
PCVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT R ++ +
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLST 114
Query: 99 ENAWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIAA-GVNVRE 151
+ L GW V+++S I MLR + Y+LN + DA LIR ++ G+NV+E
Sbjct: 115 PDNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKE 174
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VY+DT+G PE+Y++KL +IFP L ITVA K ADS YP V AAS+CA
Sbjct: 175 VYIDTIGNPEAYQRKLEQIFPSLKITVAKK---------------ADSLYPSVSAASVCA 219
Query: 212 KVSRDSALKSWTFQEGIQIEN--------NAWGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
KV+RD AL+ ++ ++ N WGSGYP D +L ++D +FG+
Sbjct: 220 KVTRDVALEI-CYRSMMEHCNAMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHEC 278
Query: 264 RFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
RFSW TA ++L+ K + ++D E E+ +T+ + +FF
Sbjct: 279 RFSWGTARELLESKTSI----KVDWPVE--EDDETQRLTDFF 314
>gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 138/239 (57%), Gaps = 22/239 (9%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVY + N E++ +G DSK L+ R+ + I KE+A
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFF---TTNTEIISTMGFHDSKILSRTMREKLFSDI-KESAV 72
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV---YVDTVGP 159
G+ I++P+ I + M QK SLNE++ A +I ++I +N R++ Y DTVGP
Sbjct: 73 CGFSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIR--INQRKIVHIYCDTVGP 130
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
Y+ ++ F ++ + + + KAD YPVV AASICAKV+RD+ L
Sbjct: 131 SGKYQMMIANEFKDIKLNQIT------------VCPKADGLYPVVSAASICAKVTRDTCL 178
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
+W ++E I+ G GYP D T K++ DP+FG+P LVRF W T+ +I++EK
Sbjct: 179 DNWIYEER-NIQTRKVGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRIIEEKV 236
>gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 341
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 158/282 (56%), Gaps = 38/282 (13%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICK 98
PCVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT + R ++ +
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLST 114
Query: 99 ENAWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIAA-GVNVRE 151
L GW V+++S I MLR + Y+LN + DA LIR ++ G+NV+E
Sbjct: 115 PGNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKE 174
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VY+DT+G PE+Y++KL +IFP L ITVA K ADS YP V AAS+CA
Sbjct: 175 VYIDTIGNPEAYQRKLEQIFPSLKITVAKK---------------ADSLYPSVSAASVCA 219
Query: 212 KVSRDSALKSWTFQEGIQIEN--------NAWGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
KV+RD AL+ ++ ++ N WGSGYP D +L ++D +FG+
Sbjct: 220 KVTRDVALEI-CYRSMMKHCNAMEPERSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGLEC 278
Query: 264 RFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
RFSW TA ++L+ K + ++D E E+ +T+ + +FF
Sbjct: 279 RFSWGTARELLESKTSI----KVDWPVE--EDDETQRLTDFF 314
>gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+]
gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+]
Length = 342
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 169/337 (50%), Gaps = 50/337 (14%)
Query: 3 EIHTASNVTEVESCIRSND-NSRNLIISSTIPESC-----KSQPCVLGIDEAGRGPVLGP 56
E T SN+ S I S+ + R+ S +P S KS P LG+DEAGRGPVLGP
Sbjct: 10 ENETPSNIFIPPSVIPSSLLSGRSYTHFSPVPPSLLASAEKSVPVCLGVDEAGRGPVLGP 69
Query: 57 MVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICKENAWL----GWMVEIIS 111
MVYG Y P ++ LL+ DSK LT + R ++ ++ + L GW ++S
Sbjct: 70 MVYGIFYLPLPLSDPLLRQTHHFDDSKVLTPQVRSSLMQTLSTAGSDLHQSCGWATTLLS 129
Query: 112 PNVICNSMLRRQ----KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKL 167
I M+R Y+LN + DA + LI+ + GVN++E+YVDT+G P +Y+KKL
Sbjct: 130 AGDISAGMMRPSNAGGSYNLNAQAMDATVQLIQGIYDRGVNIQEIYVDTIGQPAAYQKKL 189
Query: 168 SEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEG 227
IFP ITVA K ADS YP V AAS+CAKV+RD+AL+ G
Sbjct: 190 ERIFPTAKITVAKK---------------ADSLYPCVSAASVCAKVTRDAALEVLWKTRG 234
Query: 228 ------------IQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ + WGSGYP D +L N+ PVFG+ RFSW TA +L+
Sbjct: 235 RPPAREEEKDKNEEDTDMEWGSGYPSDQRCVTWLRGNMHPVFGWGPECRFSWGTAKDMLE 294
Query: 276 -EKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
K V V+ DD + T + +FF K E
Sbjct: 295 GPKGVKVDWPVDDDGD-------THRLTDFFSAKDQE 324
>gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 18/237 (7%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVY + N E++ +G DSK L+ R+ + I KE+A
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFF---TTNTEIISTMGFHDSKILSRTMREKLFSDI-KESAV 72
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPE 161
G+ I++P+ I + M QK SLNE++ A +I ++I + + +Y DTVGP
Sbjct: 73 CGFSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRISQRKIVHIYCDTVGPSG 132
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ ++ F ++ + + + KAD YPVV AASICAKV+RD+ L +
Sbjct: 133 KYQMMIANEFKDIKLNQIT------------VCPKADGLYPVVSAASICAKVTRDTCLDN 180
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
W ++E I+ G GYP D T K++ DP+FG+P LVRF W T+ +I++EK
Sbjct: 181 WIYEER-NIQTKQVGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRIIEEKV 236
>gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143]
gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88]
Length = 341
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 158/282 (56%), Gaps = 38/282 (13%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALTEKKRDDILDSICK 98
PCVLG+DEAGRGPVLGPMVY Y P + LL + DSK LT R ++ +
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLST 114
Query: 99 ENAWL----GWMVEIISPNVICNSMLR--RQKYSLNEVSHDAAIGLIRKVIAA-GVNVRE 151
+ L GW V+++S I ML+ + Y+LN + DA LIR ++ G+NV+E
Sbjct: 115 PDNSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKE 174
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VY+DT+G PE+Y++KL +IFP L ITVA K ADS YP V AAS+CA
Sbjct: 175 VYIDTIGNPEAYQRKLEQIFPSLQITVAKK---------------ADSLYPSVSAASVCA 219
Query: 212 KVSRDSALKSWTFQEGIQIEN--------NAWGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
KV+RD AL+ ++ ++ N WGSGYP D +L ++D +FG+
Sbjct: 220 KVTRDVALEI-CYRSMMEHCNAMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHEC 278
Query: 264 RFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
RFSW TA ++L+ K + ++D E E+ +T+ + +FF
Sbjct: 279 RFSWGTARELLESKTSI----KVDWPVE--EDDETQRLTDFF 314
>gi|324513411|gb|ADY45510.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 190
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 109/168 (64%), Gaps = 16/168 (9%)
Query: 119 MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITV 178
MLRR KYSLNE+SH +AI LI+ + G+NV E+YVDTVGP +Y+ KL FP + ITV
Sbjct: 1 MLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTVGPKSTYQAKLQAHFPNISITV 60
Query: 179 ASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEG-IQIENNAWGS 237
KAD S +PVVGAASI AKV+RD L+ W F EG + + +GS
Sbjct: 61 TEKAD---------------SLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVPEGGYGS 105
Query: 238 GYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDE 285
GYPGDP T+KFL +IDPVFG+ LVRFSW TA IL++ A + +E
Sbjct: 106 GYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKTAETILEKSAFPCKWEE 153
>gi|397640214|gb|EJK73996.1| hypothetical protein THAOC_04357 [Thalassiosira oceanica]
Length = 391
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 137/262 (52%), Gaps = 37/262 (14%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAY-------CPKDNNEELLKNLGCAD 80
I I E Q VLGIDEAGRGPVLGPM YG A+ P D N D
Sbjct: 79 IPDNIREKGGDQGVVLGIDEAGRGPVLGPMTYGCAFWHPSSSDIPSDFN----------D 128
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK L+ +KR + +I + + +G+++ ++ + I +MLRR Y+LN +SHDAA+ +IR
Sbjct: 129 SKQLSAEKRASLFQTI-RTSKNIGFVLRVLHASEISRNMLRRSPYNLNAMSHDAAMEMIR 187
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
V+ AGV + YVDTVG PE+Y++KL F I + KAD+
Sbjct: 188 AVLNAGVRIDTAYVDTVGIPEAYQRKLERAFEGHNINF-------------VVEKKADAK 234
Query: 201 YPVVGAASICAKVSRDSALKSWTFQE---GIQIENN-AWGSGYPGDPVTKKFLSE--NID 254
Y AAS+ AK +RD W F E G + + GSGYP DP K ++ N+D
Sbjct: 235 YAPCSAASVVAKEARDRMTSGWKFTEAAFGYKPQGGFEVGSGYPSDPKCKAWMGRNCNVD 294
Query: 255 PVFGFPQLVRFSWSTASKILKE 276
FGFP VRFSW A LKE
Sbjct: 295 SPFGFPDFVRFSWGPAKNALKE 316
>gi|256078516|ref|XP_002575541.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232310|emb|CCD79665.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 237
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 134/235 (57%), Gaps = 27/235 (11%)
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W+ +V +ISP I ML + K SLN +SHD+AI LI+ V+ +GVN+ EVYVDTVG E
Sbjct: 7 WISAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAE 66
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ KL +FP+L I V SKAD TYP+V AASI AKV+RD L+
Sbjct: 67 HYETKLQNLFPQLKIRVESKAD---------------DTYPIVSAASIFAKVTRDRVLQM 111
Query: 222 WTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
W +E G E GSGYPGDPVTK +L +DPVFGFP LVR SWST+S +L + V
Sbjct: 112 WPKEERGSVPEGTGLGSGYPGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLLDQHGVS 171
Query: 281 VEGDEIDDEEEEGENKK----------TRSIRNFFKPKADENVESPVVEERHAFF 325
V ++ + EE + KK T + NFF A +P +R FF
Sbjct: 172 VRWEDDETHEEVLQAKKLARKREHSKGTCKLSNFFN-NAQSKSSTPDALQRQPFF 225
>gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
Length = 342
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 152/274 (55%), Gaps = 51/274 (18%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
SST ++ PCVLGIDEAGRGPVLGPMVY Y P L K+L L E+
Sbjct: 55 SSTNETKTETTPCVLGIDEAGRGPVLGPMVYSAFYLPM----HLHKSL-------LAEEH 103
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRKVI-A 144
D DS N+ GW V+++S I + MLR Y+LN + DA I +IR V+
Sbjct: 104 HFD--DSHSLHNS-CGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVET 160
Query: 145 AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVV 204
++V+EVYVDT+G PE+++ +L +FP L ITVA K ADS YP V
Sbjct: 161 QRIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKK---------------ADSLYPSV 205
Query: 205 GAASICAKVSRDSALKS----WTFQ------------EGIQIENN--AWGSGYPGDPVTK 246
AAS+CAKV+RD+AL++ W Q E + + + +WGSGYP D
Sbjct: 206 SAASVCAKVTRDAALEACYDNWVNQRKRKRAQESTGDEATEQQEDVMSWGSGYPSDGKCI 265
Query: 247 KFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
+L +++DP+FG+ RFSW T+ ++L+ K+ L
Sbjct: 266 GWLKKDMDPLFGWGTECRFSWGTSKELLETKSGL 299
>gi|444320573|ref|XP_004180943.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
gi|387513986|emb|CCH61424.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
Length = 312
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 151/278 (54%), Gaps = 38/278 (13%)
Query: 30 STIPESCKSQ----PCVLGIDEAGRGPVLGPMVYGTAYCPKDN-NEELLKNLGCADSKAL 84
S++P+S S+ P +LG+DEAGRGPVLGPMVYG AYC + NE ++ N DSK L
Sbjct: 24 SSVPDSIVSKKDTSPIILGVDEAGRGPVLGPMVYGIAYCTTNYMNEFIIPNYEFDDSKKL 83
Query: 85 TEKKRDDILD-------SICKENAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDA 134
T+ R + SI E +G+ I+PN I + MLR + Y+LNE +HD
Sbjct: 84 TDTIRKKLFSKMYSNDPSIDPEINQIGYATTAITPNDISSGMLRFPPSKNYNLNEQAHDV 143
Query: 135 AIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIA 194
I LI+ V+ V + VYVDTVGPP+SY+KKL FP + TV KADS Y +V A
Sbjct: 144 TIALIQGVLDQNVQLSHVYVDTVGPPQSYQKKLETRFPNVKFTVTKKADSLYCIVSVASV 203
Query: 195 SKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
AKV+RD + S I GSGYP DP TK++L E+
Sbjct: 204 V---------------AKVTRDFLIDSMKRNPNENI-----GSGYPSDPNTKRWLRESQT 243
Query: 255 PVFGFP-QLVRFSWSTASKILKEKAVLVEGDEIDDEEE 291
+FG+P +VRFSW T +L + + +ID EE+
Sbjct: 244 KLFGWPCDMVRFSWQTCDTLLTDSN--TKSIQIDWEED 279
>gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi]
gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi]
Length = 282
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 119/193 (61%), Gaps = 18/193 (9%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S PC +GIDEAGRGPVLGPMVY T NNE +L +G DSK LTE KR++I + +
Sbjct: 27 SMPCAIGIDEAGRGPVLGPMVY-TCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMK 85
Query: 98 KENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
N G+ +S +I +ML R KYSLN++SHD AI L++ + +NV +VYVD
Sbjct: 86 GSNMSEIFGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVD 145
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
TVGP + Y+ L + FP++ I V+ K AD+ +P+V AAS+ AKV R
Sbjct: 146 TVGPKDPYQAMLHKKFPDMQIIVSEK---------------ADAKFPIVSAASVIAKVKR 190
Query: 216 DSALKSWTFQEGI 228
D AL++WTF EGI
Sbjct: 191 DRALRNWTFPEGI 203
>gi|366995529|ref|XP_003677528.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
gi|342303397|emb|CCC71176.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
Length = 299
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 146/245 (59%), Gaps = 28/245 (11%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKALTEKKRDDILDSI-- 96
P +LG+DEAGRGPVLGPMVYG +YC +E L+ + DSK LT+ R D+ +
Sbjct: 32 PVILGVDEAGRGPVLGPMVYGISYCTSQYQDEVLIPHYDFDDSKKLTDAVRRDLFHKMYE 91
Query: 97 CKENAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
++ +G+ +I+P I + MLR + Y+LN+ +HD + LI+ V+ GV + VY
Sbjct: 92 TRDIEDVGYATTVITPTDISSGMLRFPPSKNYNLNQQAHDVTMDLIKGVLDRGVQLSHVY 151
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGA-AIASKADSTYPVVGAASICAK 212
VDTVGPP SY+KKL + FPE VGA +A KADS Y VV AS+ AK
Sbjct: 152 VDTVGPPASYQKKLEDRFPE---------------VGAFTVAKKADSLYCVVSVASVVAK 196
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTAS 271
V+RD ++S + ++ GSGYP DP T K+L E P+FG+P ++VRFSW T
Sbjct: 197 VTRDILVESLK-----RSDDEIIGSGYPSDPKTVKWLRETQTPLFGWPIEMVRFSWQTCQ 251
Query: 272 KILKE 276
++K+
Sbjct: 252 TLMKD 256
>gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica]
Length = 195
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 124/203 (61%), Gaps = 17/203 (8%)
Query: 57 MVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVIC 116
MVY A+C ++++ G DSK L E R+ +L SI K + W+G+ ++ P I
Sbjct: 1 MVYAAAFCAITEHQKVRDECGANDSKQLEEVDRERMLKSIDK-SGWIGYTGVVLPPAYIS 59
Query: 117 NSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELI 175
SMLRR KY+LNE+SHD AI +IR+ I G+NV+ V+VDTVG PE Y+ KL FP+L
Sbjct: 60 KSMLRRIKYNLNEMSHDTAISMIRRAIDYHGINVKSVFVDTVGKPEKYQDKLLRYFPQLS 119
Query: 176 ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAW 235
I V SKAD+TY P+VGAASI AKV+RD + +W E ++
Sbjct: 120 IKVESKADATY---------------PIVGAASIIAKVTRDKLVHNWDHVEPSVNKSIEV 164
Query: 236 GSGYPGDPVTKKFLSENIDPVFG 258
GSGYPGDP TK ++ +++D +FG
Sbjct: 165 GSGYPGDPKTKNWIRQHLDHIFG 187
>gi|406695841|gb|EKC99140.1| hypothetical protein A1Q2_06544 [Trichosporon asahii var. asahii
CBS 8904]
Length = 300
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 139/246 (56%), Gaps = 36/246 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGPVLGPMVY A+CP + + L+ LG ++L E D+ +C ++
Sbjct: 39 IMGIDEAGRGPVLGPMVYACAFCPM-SFKPTLEGLGFDVRQSLWEAF--DVHPELCYSSS 95
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
++P I +MLR+ +LN+ + DA +GLIR + G+NV+E +VD +GP +
Sbjct: 96 -------TLAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINVQECFVDALGPSQ 148
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
++ KLS FP + V KADS + +VGAA SI AKV+RD ++
Sbjct: 149 VWQDKLSAEFPTIKFLVCPKADSLFKIVGAA---------------SIVAKVTRDRYIEG 193
Query: 222 WTFQEGI----------QIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
W EG + E GSGYP DP T+ FL + +DPVFG+ +VRFSW+T
Sbjct: 194 WVDAEGPMPGSAGAGDEEAEELIRGSGYPSDPKTQAFLRQQLDPVFGYRGMVRFSWATV- 252
Query: 272 KILKEK 277
K+L EK
Sbjct: 253 KVLLEK 258
>gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 147/272 (54%), Gaps = 28/272 (10%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK-ENA 101
LGIDEAGRGPVLGPM+Y + Y P ++ + + DSK + E RD + D + + +
Sbjct: 34 LGIDEAGRGPVLGPMLYASCYWPTKYHKLISETCKFVDSKQINEAARDKLFDVLTQLKGK 93
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + ++ + + L +LN++SH+ A LI+ I G + E++VDTVGP +
Sbjct: 94 VLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQSAIQKGYKITEIFVDTVGPKQ 153
Query: 162 SYKK----KLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+YK KL EI E I V KADS Y V AA SICAKV+RD
Sbjct: 154 TYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAA---------------SICAKVTRDY 198
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ Q+ I + N++ GSGYPGDP TKK+L P F +P+ VRFSW T I+ ++
Sbjct: 199 RIT--LIQQEI-LPNDSIGSGYPGDPKTKKYLENTNIPFFVYPKYVRFSWQTIKTIINDR 255
Query: 278 AVLVEGDEIDDEEEEGENKKTRSIRNFFKPKA 309
+ ID ++E+ K+ + + ++F KA
Sbjct: 256 DL-----NIDYKDEQEAAKQVQKLPDYFNVKA 282
>gi|448117125|ref|XP_004203179.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384047|emb|CCE78751.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 153/289 (52%), Gaps = 34/289 (11%)
Query: 30 STIPESCKSQP---CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
S IP + SQP VLG+DEAGRGPVL P + N G +DSK L E
Sbjct: 74 SEIPSAIASQPDEPLVLGVDEAGRGPVLTPS-FNVLESENPNFFNSAWYFGFSDSKTLKE 132
Query: 87 KKRDDILDSICKENAWL----GWMVEIISPNVICNSMLR----RQKYSLNEVSHDAAIGL 138
R D+L I E L GW IS I + MLR + Y+LN+ +HD I L
Sbjct: 133 GVRTDLLQKIEDEEHELHNNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIEL 192
Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
I+++I +N+ +++VDTVGPP SY+ KL FP + +TV K AD
Sbjct: 193 IQQIIDKKLNIAKIFVDTVGPPASYQAKLQRRFPGVEVTVTKK---------------AD 237
Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
S +PVV ASI AKV+RD L + + +++ A+GSGYP DP T ++L+ ++D VFG
Sbjct: 238 SLFPVVSTASIVAKVTRDKVLHHYCSIAPL-LQSAAFGSGYPSDPNTSRWLNSSVDTVFG 296
Query: 259 -FPQLVRFSWSTASKIL-KEKAVLVEGDEIDDEEEEGENKKTRSIRNFF 305
F LVRFSW TA L K A V I + E E+ R++ +FF
Sbjct: 297 WFFGLVRFSWQTAKDALVKNGACSV----IYEAECVKEDSGYRNVASFF 341
>gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600)
[Aspergillus nidulans FGSC A4]
Length = 339
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 152/275 (55%), Gaps = 28/275 (10%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALT 85
I + TI + + +LGIDEAGRGPVLGPMVY Y P + LL + DSK LT
Sbjct: 49 ISTQTIATNPEHDYLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLT 108
Query: 86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLI 139
R +++ +C + + L GW +++S I + M+R Y+LN + DA I LI
Sbjct: 109 AGVRANLMRILCTQGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELI 168
Query: 140 RKVIAA-GVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
R V+ +NVREVY+DT+G P SY+KKL +FP L ITVA K AD
Sbjct: 169 RGVVEERKLNVREVYIDTIGNPASYQKKLEMVFPSLRITVAKK---------------AD 213
Query: 199 STYPVVGAASICAKVSRDSALK-SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVF 257
S YP V AAS+ AKV+RD AL + + + WGSGYP D ++ N+DPVF
Sbjct: 214 SLYPCVSAASVVAKVTRDVALDVCYEVLKENGGVGDGWGSGYPSDSKCVGWMRTNMDPVF 273
Query: 258 GFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEE 292
G+ RFSW TA ++L+ K G+++D EE
Sbjct: 274 GWGNECRFSWGTAKEMLEVKG----GEKVDWPAEE 304
>gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1]
gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG]
Length = 366
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 115/197 (58%), Gaps = 16/197 (8%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
IISS C +P LGIDEAGRG VLG MVY +C ++ ++ LK L DSK L E
Sbjct: 9 IISSNF-HKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKE 67
Query: 87 KKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG 146
+R++ ++I + GW + I I MLR++KYSLNE+SHD AI LI + + +G
Sbjct: 68 WEREEAFEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSG 127
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
VNV EV+VDTVG +Y+ KL FP + I VA KA DS +PVV A
Sbjct: 128 VNVTEVFVDTVGNANAYQAKLKAHFPSIKIKVAEKA---------------DSLFPVVSA 172
Query: 207 ASICAKVSRDSALKSWT 223
ASI AKV+RD L WT
Sbjct: 173 ASILAKVTRDRMLVRWT 189
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 235 WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEG-DEIDDEEEEG 293
+GSGYPGD T FL+ N DPVFGF VRFSWSTA I +++ V V+ DE+DDE G
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDWYDEVDDEAGSG 323
Query: 294 --ENKKTRSIRNFFKPKADENVESPVVEERHAFFKES 328
E K++R I NFF K + ER AFF S
Sbjct: 324 ASEAKQSR-ITNFFAAKREATAGGI---ERPAFFLRS 356
>gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
Length = 366
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 115/197 (58%), Gaps = 16/197 (8%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
IISS C +P LGIDEAGRG VLG MVY +C ++ ++ LK L DSK L E
Sbjct: 9 IISSNF-HKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKE 67
Query: 87 KKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG 146
+R++ ++I + GW + I I MLR++KYSLNE+SHD AI LI + + +G
Sbjct: 68 WEREEAFEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSG 127
Query: 147 VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGA 206
VNV EV+VDTVG +Y+ KL FP + I VA KA DS +PVV A
Sbjct: 128 VNVTEVFVDTVGNANAYQAKLKAHFPSIKIKVAEKA---------------DSLFPVVSA 172
Query: 207 ASICAKVSRDSALKSWT 223
ASI AKV+RD L WT
Sbjct: 173 ASILAKVTRDRMLVRWT 189
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 235 WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEG-DEIDDEEEEG 293
+GSGYPGD T FL+ N DPVFGF VRFSWSTA I +++ V V+ DE+DDE G
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDWYDEVDDEAGSG 323
Query: 294 --ENKKTRSIRNFFKPKADENVESPVVEERHAFFKES 328
E K++R I NFF K + ER AFF S
Sbjct: 324 ASEAKQSR-ITNFFAAKREATAGGI---ERPAFFLRS 356
>gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis]
Length = 304
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 144/263 (54%), Gaps = 28/263 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK-EN 100
+LG+DEAGRGPV+GPMVYG +YC + ++++ G DSK LT+ R + I E
Sbjct: 48 ILGVDEAGRGPVMGPMVYGISYCTRQYEKDVICKYGFDDSKKLTDPVRQKLFAMIYGGEI 107
Query: 101 AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+G+ I+ I + M R + Y+LNE +HD I LI V+ +GV V VYVDTV
Sbjct: 108 DGVGYATTSITACDISSGMFRFPPEKNYNLNEQAHDVTIALIDDVLKSGVKVGHVYVDTV 167
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
GPP SY+KKL IFP+ TVA KADS YP+V A AKV+RD
Sbjct: 168 GPPISYQKKLESIFPQCKFTVAKKADSIYPIVSVASVV---------------AKVTRDI 212
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF-PQLVRFSWSTASKILKE 276
L + + E+ GSGYPGD T ++L + P+ G+ P +VRFSW T + +L
Sbjct: 213 IL-----SQCKKTEDEILGSGYPGDSKTVQWLRNEMKPLMGWSPYMVRFSWQTCATMLAN 267
Query: 277 KAVLVEGDEIDDEEEEGENKKTR 299
+ EI+ EE+ KK +
Sbjct: 268 SKSTI---EIEWEEDAMTKKKMQ 287
>gi|440299535|gb|ELP92087.1| ribonuclease H2 subunit A, putative [Entamoeba invadens IP1]
Length = 274
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 141/239 (58%), Gaps = 25/239 (10%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPV+GPMVY TA+ D +E + ++G DSK L + +R+ + I + +
Sbjct: 22 IGIDEAGRGPVVGPMVY-TAFFTTDADE--VSDMGFKDSKVLNKAQRESLYSDI-HNSPF 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPE 161
G+ E+++P+ I M + K SLNEV+ A +I +++ V+ V+VDTVGPP
Sbjct: 78 CGYSSEVLTPSDINKKMCQPLKISLNEVAFSAVRTIISRILNITQRGVKGVFVDTVGPPA 137
Query: 162 SYKKKLSEIFPEL---IITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
YK ++ FP++ ITV SKAD+ YP VV ASI AKV+RD
Sbjct: 138 KYKAMIAHSFPQIDPECITVCSKADAKYP---------------VVSGASIVAKVTRDVC 182
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
L+ W F+E E + G GYP D VT ++ E+ DPVFG+P VRF W T+ +I+++K
Sbjct: 183 LERWIFKE-THTEGFS-GFGYPTDLVTINWMKESYDPVFGYPNFVRFGWETSKRIVEKK 239
>gi|401884266|gb|EJT48435.1| hypothetical protein A1Q1_02567 [Trichosporon asahii var. asahii
CBS 2479]
Length = 301
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 139/247 (56%), Gaps = 37/247 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGPVLGPMVY A+CP + + L+ LG ++L E D+ +C ++
Sbjct: 39 IMGIDEAGRGPVLGPMVYACAFCPM-SFKPTLEGLGFDVRQSLWEAF--DVHPELCYSSS 95
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE-VYVDTVGPP 160
++P I +MLR+ +LN+ + DA +GLIR + G+NV+E +VD +GP
Sbjct: 96 -------TLAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINVQEQCFVDALGPS 148
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ ++ KLS FP + V KADS + +VGAA SI AKV+RD ++
Sbjct: 149 QVWQDKLSAEFPTIKFLVCPKADSLFKIVGAA---------------SIVAKVTRDRYIE 193
Query: 221 SWTFQEGI----------QIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
W EG + E GSGYP DP T+ FL + +DPVFG+ +VRFSW+T
Sbjct: 194 GWVDAEGPMPGSAGAGDEEAEELIRGSGYPSDPKTQAFLRQQLDPVFGYRGMVRFSWATV 253
Query: 271 SKILKEK 277
K+L EK
Sbjct: 254 -KVLLEK 259
>gi|403176171|ref|XP_003888919.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172134|gb|EHS64560.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 320
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 126/226 (55%), Gaps = 32/226 (14%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
E K ++GIDEAGRGPVLGPMVYG A+C + E+ L +LG ADSK LT ++R+++L
Sbjct: 61 EQLKRDNWIMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELL 120
Query: 94 DSICKE------NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
+ I N + W V++++P I M RR Y+LN + DA +I+ +
Sbjct: 121 EMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQY 180
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
N++ +YVDT+GPP++++ KL + FP + TV SKADS YP+VGAA
Sbjct: 181 NLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSI---------------YPIVGAA 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIE-----------NNAWGSGYPGD 242
S+ AKV+RD+ + W E + + GSGYP D
Sbjct: 226 SVVAKVTRDAIVSHWIHPESTHPQKRKSSQEDEDATTSLGSGYPSD 271
>gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans]
gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans CBS 6340]
Length = 342
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 160/303 (52%), Gaps = 36/303 (11%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQPC--VLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL 72
+ + + D+ + S +P+ + C +LG+DEAGRGPVLGPMVYG +YC ++ +E+
Sbjct: 52 TVLEAKDSLHSRTFYSEVPQQIRDSGCAVILGVDEAGRGPVLGPMVYGISYCTREYQDEV 111
Query: 73 LK-NLGCADSKALTEKKRDDILDSI-CKENAWLGWMVEIISPNVICNSMLR---RQKYSL 127
LK DSK LT+ R D+ + E +G+ IS I + MLR + Y+L
Sbjct: 112 LKKRYAFDDSKKLTDPVRRDLFQRMYTGEIDQVGYATTCISACDISSGMLRFPPEKNYNL 171
Query: 128 NEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYP 187
NE +HD I LIR V+ GV V VYVDTVGPP +Y++KL +FP + TVA KADS +
Sbjct: 172 NEQAHDVTIALIRGVLERGVAVEHVYVDTVGPPATYQRKLEGLFPSIKFTVAKKADSLFC 231
Query: 188 VVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKK 247
VV A AKV+RD ++ + + GSGYP D T
Sbjct: 232 VVSVASVV---------------AKVTRDVLIELLRAR-----PDEVLGSGYPSDAKTTA 271
Query: 248 FLSENIDPVFGFP-QLVRFSWSTASKILKEK--AVLVEGDEIDDEEEEGENKKTRSIRNF 304
+L N +FG+P Q VRFSW T+ +L AV +E E++ K ++S+
Sbjct: 272 WLRSNRTALFGWPLQTVRFSWQTSQTLLDRNPDAVPIEW------EDDYIGKGSQSMAAM 325
Query: 305 FKP 307
F+P
Sbjct: 326 FQP 328
>gi|365987942|ref|XP_003670802.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
gi|343769573|emb|CCD25559.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
Length = 299
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 155/292 (53%), Gaps = 50/292 (17%)
Query: 1 MEEIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYG 60
++ IHT S + V I N+++ P ++G+DEAGRGPVLGPMVYG
Sbjct: 21 LQSIHTTSYFSPVPPSILGNNDA---------------SPIIMGVDEAGRGPVLGPMVYG 65
Query: 61 TAYCPKD-NNEELLKNLGCADSKALTEKKRDDILDSICKENAW-----------LGWMVE 108
+YC ++ NE ++ N DSK LT+ R + + + N+ +G+
Sbjct: 66 VSYCTEEYQNETIIPNYEFDDSKKLTDPIRRKLFSKMYRHNSHDLQKDEIELDSIGYATT 125
Query: 109 IISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKK 165
I+P I + ML+ + Y+LNE +HD + LI+ V+ GVN+ VYVDTVGP ++Y+K
Sbjct: 126 SITPLDISSGMLKYPPEKVYNLNEQAHDVTMALIQGVLNLGVNLSHVYVDTVGPSQTYQK 185
Query: 166 KLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQ 225
KL + FP + TV KADS + VV A AKV+RD ++S
Sbjct: 186 KLQDRFPSVEFTVTKKADSLFCVVSVASVV---------------AKVTRDILVESLKRP 230
Query: 226 EGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTASKILKE 276
E +I GSGYP D T K+L EN +FG+P ++VRFSW T +LK+
Sbjct: 231 EVDEI----IGSGYPSDAKTTKWLRENQTLLFGWPKEMVRFSWQTCQTLLKK 278
>gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata]
Length = 307
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 143/258 (55%), Gaps = 28/258 (10%)
Query: 30 STIPES--CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKALTE 86
S IP+S P +LG+DEAGRGPV+GPMVYG +YC K+ ++ L+ DSK LT+
Sbjct: 28 SEIPKSVIANESPVILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYTFDDSKKLTD 87
Query: 87 KKRDDILDSI-CKENAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKV 142
R + + E +G+ I+P I M R + Y+LNE +HD + LI+ V
Sbjct: 88 PVRRMLFSKMYAGEIDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHDVTMALIQGV 147
Query: 143 IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
I GV++ VYVDTVGPP SY++KL + FP + TVA KADS Y VV A
Sbjct: 148 IDRGVSIDHVYVDTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVASVV------- 200
Query: 203 VVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-Q 261
AKV+RD ++S + + GSGYP DP T +L N P+ G+P +
Sbjct: 201 --------AKVTRDLLIESLR-----RTPDEIMGSGYPSDPKTVAWLKGNQKPLLGWPIE 247
Query: 262 LVRFSWSTASKILKEKAV 279
+VRFSW T +LK+K+
Sbjct: 248 IVRFSWQTCQTLLKDKST 265
>gi|430812385|emb|CCJ30193.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 242
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 137/255 (53%), Gaps = 40/255 (15%)
Query: 57 MVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVIC 116
MVY AYCP+ N +LK G +DSK LT ++R + M + S I
Sbjct: 1 MVYSVAYCPQ-NYANILKEYGFSDSKTLTPEQRKQL-------------MQMLFSAREIS 46
Query: 117 NSMLRRQ-KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELI 175
MLR Y+LN +HD I L+ +V ++EVYVDTVGP SY+ KL ++FP+
Sbjct: 47 QGMLRPDGSYNLNAQAHDTTIQLLFEVFKRNPGIKEVYVDTVGPSSSYQIKLQQLFPQTN 106
Query: 176 ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAW 235
+ V KA DS YP+V ASICAKVSRD+AL I +W
Sbjct: 107 VIVTEKA---------------DSIYPIVSTASICAKVSRDNALSK------AAIHGESW 145
Query: 236 GSGYPG--DPVTKKFLSENIDPVFGFP-QLVRFSWSTASKILKEKAVLVEGDEIDDE-EE 291
GSGYP DP+T K+L ++DP+FG+P ++VR+SW TA +L++ A + ++ E +
Sbjct: 146 GSGYPSDIDPITCKWLKYSMDPIFGWPYEIVRYSWQTAKDLLEKDAQKKDNSKVHVEWYK 205
Query: 292 EGENKKTRSIRNFFK 306
+ E R I+++ K
Sbjct: 206 KNEKSSMRDIQSYSK 220
>gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973934|gb|EED92264.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 249
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 131/237 (55%), Gaps = 21/237 (8%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRGPVLGPM Y AY + G DSK L+ +KR + D I + ++
Sbjct: 1 ILGIDEAGRGPVLGPMTYAAAYWSPTATD---IPEGFNDSKQLSAEKRASLFDEIKRSDS 57
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G+++ ++ + I +MLR + Y+LN +SHDAA+ +I V+ +GV + Y+DTVG P+
Sbjct: 58 -IGFVLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIWAVLDSGVKIETAYIDTVGMPD 116
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+Y+ KL +F I + KAD+ Y AAS+ AK SRD+ + +
Sbjct: 117 AYRSKLERVFQGHNIEF-------------IVEKKADAKYAPCSAASVVAKESRDTLIAN 163
Query: 222 WTFQEGIQIENNA--WGSGYPGDPVTKKFLSE--NIDPVFGFPQLVRFSWSTASKIL 274
W + E + +GSGYP DP ++ N+D FG+P VRFSW A K L
Sbjct: 164 WKWTETSYEPKDGRNFGSGYPSDPKCTTWMENNLNVDAPFGYPDFVRFSWGPAKKAL 220
>gi|367000307|ref|XP_003684889.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
gi|357523186|emb|CCE62455.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
Length = 308
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 141/274 (51%), Gaps = 34/274 (12%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKALTEKKRDDILDSICK- 98
+LG+DEAGRGPV+GPMVYG +YC + +E L+ N DSK LT+ R + + +
Sbjct: 36 VILGVDEAGRGPVMGPMVYGISYCTQRYQDEVLIPNYEFDDSKKLTDVVRRKLFAKMYEP 95
Query: 99 --------ENAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGV 147
E +G+ I+P I + MLR + Y+LNE +HD + LI V+ GV
Sbjct: 96 ITEGSDQVEIDGVGYATTAITPVDISSGMLRFPPSKNYNLNEQAHDVTMALIEGVVQRGV 155
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ VYVDTVGPP SY+KKL E FP + TVA KADS Y S V
Sbjct: 156 VLDHVYVDTVGPPNSYQKKLEERFPSIKFTVAKKADSLY------CVVSVASVVAKVSRD 209
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ-LVRFS 266
+ K+ R S K+ GSGYP DP T +L +N P+FG+P +VRFS
Sbjct: 210 ILIEKLKRSSDEKT--------------GSGYPSDPNTVAWLRDNQRPLFGWPNSMVRFS 255
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEGENKKTRS 300
W T +L E V I+ EE+ +KK S
Sbjct: 256 WQTCKTLLVEDKYKVGSIPIEWEEDYIVSKKNMS 289
>gi|402466642|gb|EJW02092.1| ribonuclease HII [Edhazardia aedis USNM 41457]
Length = 250
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 35/238 (14%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
++G+DEAGRGP LG MVYG EE+ DSKA+ E KR++ L I KE
Sbjct: 30 VIIGVDEAGRGPALGHMVYGAMIA-----EEIKHPF--TDSKAIAESKRNEFLKIIEKE- 81
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV-NVREVYVDTVGP 159
++ I P I + M SLN++++ I +++ ++ + + N+ VY+D +GP
Sbjct: 82 --YSYVYTAIHPQYISHQMSVE---SLNDIAYKVVINILKTIVNSKLYNISCVYLDALGP 136
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+Y + L + FP++ V KADSTYP VV ASI AKV+RD L
Sbjct: 137 NTTYMRILEKNFPKIKFVVECKADSTYP---------------VVAGASIVAKVTRDRLL 181
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
++W + + +GSGYPGD VT+K+L N PVFGFP +VRFSW T + K +
Sbjct: 182 RNWP------VTDKKFGSGYPGDDVTRKWLERNFCPVFGFPNIVRFSWKTVKQFFKTR 233
>gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
Length = 791
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 126/221 (57%), Gaps = 18/221 (8%)
Query: 24 RNLIISSTIPESC-KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
R L+++S P SC P +LGIDEAGRGPV+GPMVYG AY P N+ + LG DSK
Sbjct: 9 RTLLLASDCPASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCA-LGFDDSK 67
Query: 83 ALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV 142
AL+ + R + + + + LGW+V +IS I + M +RQ +LNE+S DAAI LI +V
Sbjct: 68 ALSAESRAQLFEKM-QSTEGLGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEV 125
Query: 143 IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
G V++V+VDTVG P Y+ L++ F I K KADS +
Sbjct: 126 QNKGAVVKKVFVDTVGDPRWYQSFLTKHFNGTIEFRVEK--------------KADSLFK 171
Query: 203 VVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDP 243
VV AASI AKV+RD + W ++ +GSGYP DP
Sbjct: 172 VVSAASIAAKVTRDRVISDWMWESPALELPTDFGSGYPSDP 212
>gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15]
Length = 243
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 136/259 (52%), Gaps = 37/259 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKALTEKKRDDI---LDSIC 97
++GIDEAGRGPV GP+VYG A+ P + + +L+ LG DSKAL+ R+ I L +
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDLP 61
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
KE+ G I+S + I +ML K SLN +S +AA L+ ++ + + VY+D V
Sbjct: 62 KED--FGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFTS-YEIEHVYIDLV 118
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P Y + E+ P + +T I +KAD+ YP+ GAASI AKV+RD
Sbjct: 119 SPESQYATYIHELMPNIALT---------------ICAKADAKYPITGAASIIAKVTRDK 163
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+K WGSGYP DP TK++L + ++GFP +R SW T +I
Sbjct: 164 HIKP------------QWGSGYPSDPKTKEYLDKTCHSIYGFPTHIRHSWETIKRIYNTP 211
Query: 278 AVLVEGDEIDD---EEEEG 293
+ V+ I D E EG
Sbjct: 212 SKCVKCTFIADTPLESNEG 230
>gi|339242469|ref|XP_003377160.1| ribonuclease H2 subunit A [Trichinella spiralis]
gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis]
Length = 418
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 20/202 (9%)
Query: 21 DNSRN-LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
D S+N ++IS +P + C LG+DEAGRGPVLGPMVY C DN E+L L
Sbjct: 160 DWSKNKIVISDNLPNFV-GKHCTLGVDEAGRGPVLGPMVYACGVCVTDNLEQL-STLKAK 217
Query: 80 DSKALTEKKRDDILDSICKE-NAWL-GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIG 137
DSK LTE +R I ++ E N+ L + ++++SP I SML R KY+LNE+SHD A+
Sbjct: 218 DSKTLTEDERSTIFKNMQSEKNSHLFAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAME 277
Query: 138 LIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKA 197
LI+ V AGV V +V +DTVGP E Y+ KL FP++ I V + KA
Sbjct: 278 LIQIVCDAGVVVDKVILDTVGPTEKYEAKLRSRFPKIDILV---------------SKKA 322
Query: 198 DSTYPVVGAASICAKVSRDSAL 219
DS + +V AASICAKV+RD+ L
Sbjct: 323 DSLHTIVSAASICAKVTRDNHL 344
>gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
Length = 243
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 128/236 (54%), Gaps = 34/236 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKALTEKKRDDI---LDSIC 97
++GIDEAGRGPV GP+VYG A+ P + + +L+ LG DSKAL+ R+ I L +
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDLP 61
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
KE+ G I+S + I +ML K SLN +S +AA L+ ++ + + VY+D V
Sbjct: 62 KED--FGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFISH-EIEHVYIDLV 118
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
GP Y + E+ P + +T I +KAD+ YP+ GAASI AKV RD
Sbjct: 119 GPESQYAAYIRELMPSIALT---------------ICAKADAKYPITGAASIVAKVIRDR 163
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+K WGSGYP DP TKK+L + ++GFP +R SW T +I
Sbjct: 164 NIKP------------QWGSGYPSDPKTKKYLDKTCHGIYGFPTHIRHSWETIKRI 207
>gi|367012081|ref|XP_003680541.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
gi|359748200|emb|CCE91330.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
Length = 299
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 138/257 (53%), Gaps = 27/257 (10%)
Query: 30 STIP-ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE-LLKNLGCADSKALTEK 87
S IP E +S +LG+DEAGRGPV+GPMVYG ++C ++ + L+ DSK LT+
Sbjct: 22 SAIPQEVTESSSVILGVDEAGRGPVMGPMVYGISFCTREYQDTVLIPKYAFDDSKKLTDP 81
Query: 88 KRDDILDSICK-ENAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVI 143
R D+ I E +G+ I+P I M R + Y+LNE +HD + LI+ V+
Sbjct: 82 VRRDLFSKIYNNEITGVGYATTCITPVDISGGMFRFPPSKNYNLNEQAHDVTMKLIQGVL 141
Query: 144 AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPV 203
GV + VYVDTVG P SY+KKL + FP + TVA KADS Y VV A +
Sbjct: 142 DRGVKLDHVYVDTVGQPASYQKKLEQRFPSVKFTVAKKADSLYCVVSVASVVAKVT---- 197
Query: 204 VGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QL 262
I +SR + +E I GSGYP DP T +L N P+FG+P ++
Sbjct: 198 ---RDIIVDLSRRNP------EEII-------GSGYPSDPKTTAWLRSNQSPLFGWPHEM 241
Query: 263 VRFSWSTASKILKEKAV 279
VRFSW T ++ ++
Sbjct: 242 VRFSWQTCQTLMDNEST 258
>gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581]
Length = 243
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 137/261 (52%), Gaps = 34/261 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCP-KDNNEELLKNLGCADSKALTEKKRDDI---LDSIC 97
++GIDEAGRGPV GP+VYG A+ P K +L+ LG DSKAL+ R+ I L ++
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHALP 61
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K++ G +IS + I +ML +K SLN +S +AA L+ +V + + VY+D V
Sbjct: 62 KDD--FGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFTS-YEIEHVYIDLV 118
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P Y + E+ P L +T I +KAD YP+ GAASI AKV+RD
Sbjct: 119 SPESQYAAYIRELMPNLALT---------------ICAKADGKYPITGAASIVAKVTRDR 163
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+K+ WGSGYP DP TK++L + ++GFP +R SW T +I
Sbjct: 164 HIKA------------QWGSGYPSDPKTKEYLDKACHSIYGFPAHIRHSWETVKRIYDTP 211
Query: 278 AVLVEGDEIDDEEEEGENKKT 298
+ ++ I D E + +
Sbjct: 212 SKCIKCTFIADTPLENDTSTS 232
>gi|403218559|emb|CCK73049.1| hypothetical protein KNAG_0M01960 [Kazachstania naganishii CBS
8797]
Length = 301
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 150/272 (55%), Gaps = 33/272 (12%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK-NLGCADSKALTEKKRDDI 92
E+ + P +LG+DEAGRGPV+GPMVYG AYC + E+ +K N DSK LT+ R +
Sbjct: 28 EADDNDPVILGVDEAGRGPVVGPMVYGVAYCKRSYEEDFIKRNYEFDDSKKLTDPVRRSL 87
Query: 93 LDSI--CKENAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGV 147
+ + E + LG+ +I+ I + M R ++Y+LNE +H+ + LI+ + GV
Sbjct: 88 FEKMYGSAEISELGYATTVITATDISSGMSRFPPSKQYNLNEQAHNVTMDLIQGCLDRGV 147
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ VYVDTVGPP SY+KKL + FP+ TV KADS + VV A
Sbjct: 148 KLHHVYVDTVGPPVSYQKKLEDRFPQQRFTVTKKADSLFCVVSVASVV------------ 195
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFS 266
AKV+RD ++S + + GSGYP DP TK++L ++ +FG+P +VRFS
Sbjct: 196 ---AKVTRDILVESLGYADI--------GSGYPSDPRTKQWLRDHQMDLFGWPNHVVRFS 244
Query: 267 WSTASKILKEKAVLVEGDEIDDEEEEGENKKT 298
W T +L+ G +I EE+ KKT
Sbjct: 245 WQTCRTLLEGNP---HGVQIQWEEDFISTKKT 273
>gi|409078396|gb|EKM78759.1| hypothetical protein AGABI1DRAFT_92329 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 237
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 126/224 (56%), Gaps = 39/224 (17%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
P P +LG+DEAGRGPVLGP+VYG AYCP + L+ LG ADSK L + R +
Sbjct: 25 PRPTAEGPYILGVDEAGRGPVLGPLVYGVAYCPVSFKGK-LEGLGFADSKTLAAEARSSL 83
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE- 151
D++ E + LGW + I + M++R +LN S +A LIR+ +A G+ + E
Sbjct: 84 FDTLSSEPSNLGW-------SAISSGMMKRPPINLNVQSEEATFLLIRETLAKGIQLTEV 136
Query: 152 -----------VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
VYVD +G +Y+K+LSE+FP + TV +K ADS
Sbjct: 137 LISSNQEALTDVYVDALGNTTTYEKRLSELFPGITFTVTTK---------------ADSK 181
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGI---QIE-NNAWGSGYP 240
+ +VGAAS+ AKV+RD+ ++ W F+E Q+E N A+GSGYP
Sbjct: 182 FKIVGAASVAAKVTRDACIECWHFEETAGNDQVEWNKAFGSGYP 225
>gi|340501874|gb|EGR28608.1| ribonuclease large subunit, putative [Ichthyophthirius multifiliis]
Length = 258
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 126/259 (48%), Gaps = 69/259 (26%)
Query: 31 TIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCP------KDNNEELLKNLGCADSKAL 84
T + S V+GIDEAGRGPV+GPMVYG P K + + ++N G DSKAL
Sbjct: 7 TFEQKKTSYEWVMGIDEAGRGPVIGPMVYGCCIWPITNTNNKKHENDKMENEGFNDSKAL 66
Query: 85 TEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA 144
T +KR+ + R Q+ +E+
Sbjct: 67 TIEKREALF--------------------------ARMQELQDDELHF------------ 88
Query: 145 AGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVV 204
EVY+DTVG E+Y+KKL + + YP + + KAD+ +PVV
Sbjct: 89 ------EVYIDTVGNKETYQKKLENDYHK-----------QYPQIKFCVKEKADADFPVV 131
Query: 205 GAASICAKVSRDSALKSWTFQEGIQIENNA--WGSGYPGDPVTKKFLSENIDPVFGFPQL 262
GAASICAKV RD + E +IE N+ GSGYP DP TKK+L N D VFGF +
Sbjct: 132 GAASICAKVIRDKEI------ENQEIEKNSVSLGSGYPSDPQTKKWLQNNFDGVFGFGNM 185
Query: 263 VRFSWSTASKILKEKAVLV 281
VRFSWST I KE+ V +
Sbjct: 186 VRFSWSTVENIFKERGVFI 204
>gi|336469012|gb|EGO57175.1| hypothetical protein NEUTE1DRAFT_123501 [Neurospora tetrasperma
FGSC 2508]
gi|350288681|gb|EGZ69906.1| hypothetical protein NEUTE2DRAFT_112272 [Neurospora tetrasperma
FGSC 2509]
Length = 381
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 167/338 (49%), Gaps = 60/338 (17%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVY Y P ++ LLK DSK LT R ++ +C
Sbjct: 43 PCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCT 102
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRKVIAAGVNVRE 151
++ L G+ +SP I + ML+ K Y+LN+ + DA I LI+ + GVNV +
Sbjct: 103 KDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNVTD 162
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV-GAAIASKA--DSTYPVVGA-- 206
+++DT+G P +Y+KKL +FP ITVA KADS YPVV A++ +K D V+ A
Sbjct: 163 IFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIALEVLWADR 222
Query: 207 ASICAKVSRD-------------------SALKSWTFQEGIQIENN-------------- 233
+ K RD + + E Q +N
Sbjct: 223 SKQMRKRKRDDEAGLEKRAKLERGDTTGTNGTDAMDVDEPSQTQNGSPKAAEEEDEEEEV 282
Query: 234 ------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEID 287
AWGSGYP D +L +N+ PVFG+ RFSW TA +L+ K G ++D
Sbjct: 283 ETNEAMAWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTAKDMLETKG----GVKVD 338
Query: 288 DEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFF 325
E E ++T+ + +FF K D+ E V+E +F
Sbjct: 339 --WPEEEEEETQKLTDFFMAKKDQ--EEVDVDELGTWF 372
>gi|157876580|ref|XP_001686636.1| putative ribonuclease H [Leishmania major strain Friedlin]
gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major]
gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major]
gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin]
Length = 301
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 148/280 (52%), Gaps = 33/280 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRGPV+GPMVY A +++L++ ADSK L E++R L + +
Sbjct: 46 VLGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKMLNERRRLASLQQLRQLKT 105
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYVDTVGPP 160
+ + V +SP I +M R + N +SH+ AI +I + +A+ + YVDTVGPP
Sbjct: 106 FRSFTV-CVSPEEISKTMTGRSGRNSNTLSHETAIQIISEATLASAGKLCAAYVDTVGPP 164
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E+Y+ +L+ FP L +TVA K ADS +P+V AASI AK RD+A++
Sbjct: 165 ETYQARLAGRFPHLRVTVAKK---------------ADSIFPIVSAASIVAKTVRDTAIE 209
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTASKILKEK 277
+ E I GSGYP DP T ++L ++ F FP R SW ++ +
Sbjct: 210 A--LGENI-------GSGYPSDPRTMEWLRSHVHRFFSFPHAYDFARHSWGPLVQLANDP 260
Query: 278 AV---LVEGDEIDDEEEEGENKKTRSIR-NFFKPKADENV 313
AV +V +++ ++G +R + +F KP ++
Sbjct: 261 AVRVPVVCEQDLEGARQQGRGGDSRQQKLSFAKPSPKRHM 300
>gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis]
Length = 259
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 139/283 (49%), Gaps = 50/283 (17%)
Query: 57 MVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVIC 116
MVYG A+ P ++L K +G ADSK LTE+KRD + I E LG+ +++S I
Sbjct: 1 MVYGLAWAPISRRKDL-KAMGFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFIS 59
Query: 117 NSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELII 176
ML R++ SLN ++ ++ LI V+A G ++LS+ FP +
Sbjct: 60 GKMLGRERVSLNALAFESTCALIEAVLARG------------------ERLSQRFPGVQF 101
Query: 177 TVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIE----- 231
V +KAD STYP+V AASI AKV+RD L+ + E
Sbjct: 102 VVEAKAD---------------STYPIVSAASIVAKVTRDRTLRDFVLGEMAASLDGGSS 146
Query: 232 ---------NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
+ +GSGYP DP TK++L +I+ VFGFP LVRFSWST + +L++ A +
Sbjct: 147 SSDGCAAALSTQFGSGYPADPQTKRWLEASINRVFGFPSLVRFSWSTCTPLLEQHAATIT 206
Query: 283 GDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFF 325
E D E+ G ++ S P S + RH++F
Sbjct: 207 -FERDAEDGAGTGQQVLSFGGCALPAGGMAAASSGL-GRHSYF 247
>gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB]
gi|349580865|dbj|GAA26024.1| K7_Rnh201p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 307
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 144/284 (50%), Gaps = 33/284 (11%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
K P ++GIDEAGRGPVLGPMVY AY K +E ++ N DSK LT+ R +
Sbjct: 30 KDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSK 89
Query: 96 ICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
I ++N +G+ I+P I M + + Y+LNE +HD + LI VI V +
Sbjct: 90 IYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKL 149
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
VYVDTVGPP SY+KKL + FP + TVA KADS Y +V A + +V +
Sbjct: 150 SHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDILVES--- 206
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWS 268
+ RD + GSGYP DP T +L N + G+P +VRFSW
Sbjct: 207 ---LKRDP--------------DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQ 249
Query: 269 TASKILKE---KAVLVEGDE--IDDEEEEGENKKTRSIRNFFKP 307
T +L + ++L++ +E +D + + K ++ KP
Sbjct: 250 TCQTLLDDASKDSILIKWEEQYMDSRKNAAQKTKQLQLQMVAKP 293
>gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789]
gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118]
Length = 307
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 148/294 (50%), Gaps = 36/294 (12%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALT 85
S +P + Q P ++GIDEAGRGPVLGPMVY AY K +E ++ N DSK LT
Sbjct: 20 SPVPSALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLT 79
Query: 86 EKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
+ R + I ++N +G+ I+P I M + + Y+LNE +HD + LI
Sbjct: 80 DPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
VI V + VYVDTVGPP SY+KKL + FP + TVA KADS Y +V A +
Sbjct: 140 DGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVT 199
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V + + RD + GSGYP DP T +L N + G+
Sbjct: 200 RDILVES------LKRDP--------------DEILGSGYPSDPKTVAWLKRNQTSLMGW 239
Query: 260 P-QLVRFSWSTASKILKE---KAVLVEGDE--IDDEEEEGENKKTRSIRNFFKP 307
P +VRFSW T +L + ++L++ +E +D + + K ++ KP
Sbjct: 240 PANMVRFSWQTCQTLLDDASKDSILIKWEEQYMDSRKNAAQKTKQLQLQMVAKP 293
>gi|396081059|gb|AFN82678.1| ribonuclease HII [Encephalitozoon romaleae SJ-2008]
Length = 239
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 127/240 (52%), Gaps = 32/240 (13%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S+ V+GIDEAGRGPV+G MVYG PK LK+ G DSK LT +R +I
Sbjct: 15 SEEVVVGIDEAGRGPVVGYMVYGALVAPKS----ALKSTGFKDSKVLTHAQRHTFFQTI- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
KE LG++ P+ I M++ SL+E+S ++ ++ ++ A NV VYVD +
Sbjct: 70 KEKG-LGYVYHCTHPDYI-TEMMQLGSTSLDEISVNSVFRILDEIKAKCENVEGVYVDAL 127
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G E YK +L + +P + + + +ADS + +V ASI AKV RD
Sbjct: 128 GNCEKYKARLKKKYPYMFV----------------VEKRADSRFQIVSGASIVAKVQRDL 171
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ + N GSGYP DP T ++L N + VFGFP VR+SWST KIL E+
Sbjct: 172 MISEF---------GNDLGSGYPSDPSTIRWLKRNTNAVFGFPPGVRYSWSTVKKILGER 222
>gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 101/165 (61%), Gaps = 27/165 (16%)
Query: 122 RQKYSLNEVSHDAAIGLI------------RKVIAAGVNVREVYVDTVGPPESYKKKLSE 169
R KY+LN +SHD AIGL+ R+ + + + +V+VDTVGP E Y+ KLS+
Sbjct: 6 RTKYNLNALSHDTAIGLVQYALDSLESSSKRRTMFSCPSGSQVFVDTVGPAEKYEDKLSK 65
Query: 170 IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQ 229
IFP + +TV KADS +P+V A ASICAKV+RD A+K W F E +
Sbjct: 66 IFPGVNVTVRPKADSLFPIVSA---------------ASICAKVARDHAVKHWRFAEELG 110
Query: 230 IENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ +GSGYP DP TK +L +DPVFG+PQ VRFSWSTA ++
Sbjct: 111 EADTDYGSGYPNDPKTKAWLLRYLDPVFGYPQFVRFSWSTAQTLM 155
>gi|365758681|gb|EHN00512.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 34/287 (11%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL-LKNLGCADSKALT 85
S +P + Q P ++GIDEAGRGPV+GPMVY AY ++ +E+ + N DSK LT
Sbjct: 20 SPVPAALLEQNDSPVIMGIDEAGRGPVMGPMVYAAAYSTREYQDEIVIPNYEFDDSKKLT 79
Query: 86 EKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
+ R + + ++N +G+ I+P I M + + Y+LNE +HD + LI
Sbjct: 80 DPVRRKLFAKMYEDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
V V + VYVDTVGPP SY+KKL + FP++ TVA KADS Y +V A +
Sbjct: 140 DGVTKQNVKLDHVYVDTVGPPMSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVT 199
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V + + RD + GSGYP DP T +L N + G+
Sbjct: 200 RDILVES------LKRDP--------------DEVIGSGYPSDPKTVAWLKRNQTGLMGW 239
Query: 260 P-QLVRFSWSTASKILKE---KAVLVEGDEIDDEEEEGENKKTRSIR 302
P +VRFSW T +L + +V+++ +E + + +KTR ++
Sbjct: 240 PTDMVRFSWQTCQTLLDDPTRHSVIIKWEEQYMDSRKNAAQKTRQLQ 286
>gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291]
Length = 307
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
K P ++GIDEAGRGPVLGPMVY AY K +E ++ N DSK LT+ R +
Sbjct: 30 KDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSK 89
Query: 96 ICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
I ++N +G+ I+P I M + + Y+LNE +HD + LI VI V +
Sbjct: 90 IYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKL 149
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
VYVDTVGPP SY+KKL + FP + TVA KADS Y +V A + +V +
Sbjct: 150 SHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDILVES--- 206
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWS 268
+ RD + GSGYP DP T +L N + G+P +VRFSW
Sbjct: 207 ---LKRDP--------------DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQ 249
Query: 269 TASKILKEKA-----VLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
T +L + + + E +D + + K ++ KP
Sbjct: 250 TCQTLLDDASKNSIPIKWEEQYMDSRKNAAQKTKQLQLQMVAKP 293
>gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23]
Length = 307
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 147/294 (50%), Gaps = 36/294 (12%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALT 85
S +P + Q P ++GIDEAGRGPVLGPMVY AY K +E ++ N DSK LT
Sbjct: 20 SPVPSALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLT 79
Query: 86 EKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
+ R + I ++N +G+ I+P I M + + Y+LNE +HD + LI
Sbjct: 80 DPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
VI V + VYVDTVGPP SY+KKL + FP + TVA KADS Y +V A +
Sbjct: 140 DGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVT 199
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V + + RD + GSGYP DP T +L N + G+
Sbjct: 200 RDILVES------LKRDP--------------DEILGSGYPSDPKTVAWLKRNQTSLMGW 239
Query: 260 P-QLVRFSWSTASKILKE---KAVLVEGDE--IDDEEEEGENKKTRSIRNFFKP 307
P +VRFSW T +L + ++ ++ +E +D + + K ++ KP
Sbjct: 240 PANMVRFSWQTCQTLLDDASKDSIXIKWEEQYMDSRKNAAQKTKQLQLQMVAKP 293
>gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c]
gi|1730743|sp|P53942.1|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(201); AltName: Full=RNase H(35);
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae]
gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae]
gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a]
gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c]
gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796]
gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3]
gi|392296919|gb|EIW08020.1| Rnh201p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 307
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 144/294 (48%), Gaps = 36/294 (12%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALT 85
S +P + Q P ++GIDEAGRGPVLGPMVY AY K +E ++ N DSK LT
Sbjct: 20 SPVPSALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLT 79
Query: 86 EKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
+ R + I ++N +G+ I+P I M + + Y+LNE +HD + LI
Sbjct: 80 DPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
VI V + VYVDTVGPP SY+KKL + FP + TVA KADS Y +V A +
Sbjct: 140 DGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVT 199
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V + + RD + GSGYP DP T +L N + G+
Sbjct: 200 RDILVES------LKRDP--------------DEILGSGYPSDPKTVAWLKRNQTSLMGW 239
Query: 260 P-QLVRFSWSTASKILKEKA-----VLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
P +VRFSW T +L + + + E +D + + K ++ KP
Sbjct: 240 PANMVRFSWQTCQTLLDDASKNSIPIKWEEQYMDSRKNAAQKTKQLQLQMVAKP 293
>gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
Length = 269
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 57/229 (24%)
Query: 119 MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITV 178
MLRR ++LN+ S DA + LI+ V+ +GV+V +++VDTVG P +Y KL + FP
Sbjct: 1 MLRRIPHNLNQQSCDATVHLIQGVLNSGVDVTKIFVDTVGEPNAYAAKLKQYFPR----- 55
Query: 179 ASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQI-------- 230
+ + +A KAD+TYP+VGAASI AKV+RD+ + W + E +Q
Sbjct: 56 -------HSHIEWIVARKADATYPIVGAASIAAKVTRDACVDHWMYAEPLQSVHHPEISK 108
Query: 231 -------------ENNAW--GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
E + W GSGYPGDP T ++L E +DPVFG+ +LVRFSW+TA +L
Sbjct: 109 SSGKRKRGNNDDEETDIWATGSGYPGDPKTVRYLKETLDPVFGWARLVRFSWATAKSML- 167
Query: 276 EKAVLVEGD-------------------EIDDEEEEGENKKTRSIRNFF 305
E+ V V D IDD +++G+ + T + NFF
Sbjct: 168 EEPVHVRQDLTSMLGTTYPSSTRAYPVRWIDDAQKQGKQQST--LANFF 214
>gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13]
gi|365763336|gb|EHN04865.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 144/294 (48%), Gaps = 36/294 (12%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALT 85
S +P + Q P ++GIDEAGRGPVLGPMVY AY K +E ++ N DSK LT
Sbjct: 20 SPVPSALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLT 79
Query: 86 EKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
+ R + I ++N +G+ I+P I M + + Y+LNE +HD + LI
Sbjct: 80 DPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
VI V + VYVDTVGPP SY+KKL + FP + TVA KADS Y +V A +
Sbjct: 140 DGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVT 199
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V + + RD + GSGYP DP T +L N + G+
Sbjct: 200 RDILVES------LKRDP--------------DEILGSGYPSDPKTVAWLKRNQTSLMGW 239
Query: 260 P-QLVRFSWSTASKILKEKA-----VLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
P +VRFSW T +L + + + E +D + + K ++ KP
Sbjct: 240 PANMVRFSWQTCQTLLDDASKDSIPIKWEEQYMDSRKNAAQKTKQLQLQMVAKP 293
>gi|401623866|gb|EJS41947.1| rnh201p [Saccharomyces arboricola H-6]
Length = 307
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 143/281 (50%), Gaps = 33/281 (11%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALTEKKRDDILDSICK 98
P ++GIDEAGRGPV+GPMVY AY K +E ++ N DSK LT+ R + + +
Sbjct: 33 PVIMGIDEAGRGPVMGPMVYAVAYSTQKYQDETVIPNYEFDDSKKLTDPIRRKLFAKMYE 92
Query: 99 EN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
N +G+ I+P I M + + Y+LNE +HD + LI V+ V + V
Sbjct: 93 HNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVLKQDVKLDHV 152
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
YVDTVGPP SY+KKL + FP+ TVA KADS Y +V A AK
Sbjct: 153 YVDTVGPPASYQKKLEQRFPDTKFTVAKKADSLYCMVSVASVV---------------AK 197
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTAS 271
V+RD ++S + + GSGYP DP T +L N + G+P +VRFSW T
Sbjct: 198 VTRDILVESLK-----RNPDEVLGSGYPSDPKTVAWLKNNQTSLMGWPANMVRFSWQTCQ 252
Query: 272 KILKEKA---VLVEGDE--IDDEEEEGENKKTRSIRNFFKP 307
+L VL++ +E +D + + K ++ KP
Sbjct: 253 TLLDNTTKDNVLIKWEEQYMDSRKNAAQKTKQLQLQMVTKP 293
>gi|389603175|ref|XP_001568699.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 318
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 136/262 (51%), Gaps = 29/262 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRGPV+GPMVY A +++L++ ADSK L E+ R L + +
Sbjct: 46 ILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQLKT 105
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYVDTVGPP 160
+ + V +SP I ++M R +LN +SH+ A+ +I + +A+ + YVDTVGPP
Sbjct: 106 FRSFTV-CVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGPP 164
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
++Y+ +L+ FP L +TVA K ADS +P+V AASI AK +RD+A
Sbjct: 165 DTYQARLAGRFPHLRVTVAKK---------------ADSKFPIVSAASIVAKTTRDTA-- 207
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL---VRFSWSTASKILKEK 277
IQ GSGYP DP +L ++ F F + VR SW ++ +
Sbjct: 208 -------IQELGENIGSGYPSDPRAIAWLRSHVHRFFVFRHVYGYVRHSWGPVVQLANDP 260
Query: 278 AVLVEGDEIDDEEEEGENKKTR 299
AV V D +EE + R
Sbjct: 261 AVCVPVVFEQDLDEEAARRLER 282
>gi|356521108|ref|XP_003529200.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like
[Glycine max]
Length = 221
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 130/238 (54%), Gaps = 19/238 (7%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVL--GPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
+ S I S+PCV+GIDEAGRGPV+ PMVY Y + L ADSK L
Sbjct: 1 MGSKILPKWASKPCVMGIDEAGRGPVIISRPMVYDFLYRAX-SYLMTFSMLSFADSKTLK 59
Query: 86 EKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAA 145
E+K++ + +++ K N +G V++I P + ML++ K +LNE+ H +A+ LI KV+
Sbjct: 60 EEKKEXLYETL-KLNDSIGXDVDVIDPRELSTKMLKKNKINLNEILHSSAMSLIDKVLKM 118
Query: 146 GVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVG 205
V + EVY+DT G Y+ KL FP + VA KAD S P+V
Sbjct: 119 EVLLTEVYIDTFGDARKYEIKLPNSFPSIKFVVAKKAD---------------SLXPIVS 163
Query: 206 AASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLV 263
ASI AKV+RD AL+ W E ++ +G Y GDP TK +L ++ +FGFP LV
Sbjct: 164 GASIVAKVTRDHALREWVLDETVENMQRFFGFAYLGDPQTKSWLEDHKHHIFGFPSLV 221
>gi|401840962|gb|EJT43568.1| RNH201-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 307
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 147/287 (51%), Gaps = 34/287 (11%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL-LKNLGCADSKALT 85
S +P + Q P ++GIDEAGRGPV+GPMVY AY ++ +++ + N DSK LT
Sbjct: 20 SPVPAALLEQNDSPVIMGIDEAGRGPVMGPMVYAVAYSTREYQDDIVIPNYEFDDSKKLT 79
Query: 86 EKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
+ R + + ++N +G+ I+P I M + + Y+LNE +HD + LI
Sbjct: 80 DPVRRKLFAKMYEDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
V V + VYVDTVGPP SY+KKL + FP++ TVA KADS Y +V A +
Sbjct: 140 DGVTKQNVKLDHVYVDTVGPPTSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVT 199
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V + + RD + GSGYP DP T +L N + G+
Sbjct: 200 RDILVES------LKRDP--------------DEVIGSGYPSDPKTVAWLKRNQTSLMGW 239
Query: 260 -PQLVRFSWSTASKILKE---KAVLVEGDEIDDEEEEGENKKTRSIR 302
+VRFSW T +L + +V+++ +E + + +KTR ++
Sbjct: 240 TTDMVRFSWQTCQTLLDDPTRHSVIIKWEEQYMDSRKNAAQKTRQLQ 286
>gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
Length = 239
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 126/240 (52%), Gaps = 32/240 (13%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S+ V+GIDEAGRGPV+G MVYG + L+N G DSK LT +R D I
Sbjct: 15 SEEVVVGIDEAGRGPVIGYMVYGALISSRTT----LENTGFRDSKVLTSGQRHDFFKMI- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
KE + G++ P+ I M++ + SLNE+S + + ++ ++ A V VYVD +
Sbjct: 70 KERGF-GYVYHCTHPDYI-TEMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDAL 127
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G E YK +L E +P Y V I KADS + +V ASI AKV RD
Sbjct: 128 GDCEKYKARLEEAYP-------------YKFV---IEEKADSKFQIVSGASIVAKVQRDI 171
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ + + GSGYP DP T K+L N + VFGFP VR+SW+T +IL E+
Sbjct: 172 LISQF---------GSNLGSGYPSDPDTIKWLKRNANAVFGFPPGVRYSWATVKRILGER 222
>gi|429857939|gb|ELA32776.1| ribonuclease hi large subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 320
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 135/282 (47%), Gaps = 48/282 (17%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALTEKKRDDILDSICK 98
P LG+DEAGRGPVLGPMVYG + P ++ LL+ DSK LT R +++++C
Sbjct: 63 PVCLGVDEAGRGPVLGPMVYGVFFLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMEALCT 122
Query: 99 ENAWL----GWMVEIISPNVICNSMLRR-QKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+ L G+ + +S + MLR Y+LN + DA + LI+ V A GVNV E+Y
Sbjct: 123 PGSDLFDSCGFAIRSLSARDLSTGMLRPGATYNLNAQAMDATVDLIKGVFARGVNVAEIY 182
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
VDTVG P +Y+ KL FP IT V
Sbjct: 183 VDTVGQPAAYQAKLQRFFPATKIT-----------------------------------V 207
Query: 214 SRDSALK----SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
+RD+AL+ + + E AWGSGYP D ++ N+ PVFG+ RFSW T
Sbjct: 208 TRDAALEVLYRARAPEAAEAEEGMAWGSGYPSDQRCVTWMRGNMHPVFGWGPECRFSWGT 267
Query: 270 ASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
A +L+ K L +DD +GE + T R+ DE
Sbjct: 268 AKDMLEAKGSLKVEWPVDD---DGEARMTDFFRSTDAEDGDE 306
>gi|440789557|gb|ELR10864.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 243
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 126/251 (50%), Gaps = 22/251 (8%)
Query: 57 MVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVIC 116
M+Y AYCP D E K G DSK + +RD + ++ E+ +G+ I+S I
Sbjct: 1 MIYACAYCPVDKQEAYRKR-GYRDSKDVKPAERDRLFAALL-EDPDVGFRSRIVSAEEIS 58
Query: 117 NSMLRR-QKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELI 175
N+ + +LNEVS+DAA GL R V+A G+N+ E+YVD +G +Y+ L +FP +
Sbjct: 59 NANYSHTENRNLNEVSYDAATGLNRDVLATGINLAELYVDALGNCATYRATLQRLFPGIC 118
Query: 176 ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAW 235
V + SKAD YP+V ASI AK RD K+ F+E N +
Sbjct: 119 TIV--------------VESKADVNYPIVSVASIVAKTLRDGITKNLPFKECYITINRNY 164
Query: 236 GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE-----KAVLVEGDEIDDEE 290
G+GYP P K +L N+DPVFG V+F+W K L + K V E E
Sbjct: 165 GNGYPSTPAVKDWLMRNLDPVFGLLSAVQFNWGPVKKALADPKNGVKRVTWEHTMGTPEH 224
Query: 291 EEGENKKTRSI 301
+ KT+SI
Sbjct: 225 KNKMQTKTKSI 235
>gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
Length = 264
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 120/222 (54%), Gaps = 25/222 (11%)
Query: 29 SSTIPE-SCKSQPCV-LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALT 85
SS +PE + P V LGIDEAGRGPVLGPM Y Y P ++ LL+ DSK LT
Sbjct: 55 SSAVPELAAPDSPAVCLGIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLT 114
Query: 86 EKKRDDILDSICKEN----AWLGWMVEIISPNVICNSMLRR-QKYSLNEVSHDAAIGLIR 140
R ++ ++C + A G+ V +S I + ML Y+LN + DA + +I+
Sbjct: 115 PAVRSALMRALCSPSTDLAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIK 174
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
VIA GV V E+YVDTVG P +Y+ KL +FP + ITVA K ADS
Sbjct: 175 GVIARGVRVEEIYVDTVGQPAAYQAKLQRVFPSVKITVAKK---------------ADSL 219
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGD 242
YP V AAS+CAKV+RD+AL+ E + N G G+
Sbjct: 220 YPCVSAASVCAKVTRDAALE--VMYEAHKAANGGHGGAEDGE 259
>gi|444526357|gb|ELV14308.1| Ribonuclease H2 subunit A [Tupaia chinensis]
Length = 244
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 27/178 (15%)
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
V+VDTVG P++Y+++L + FP + +TV +KAD+ +PVV AASICA
Sbjct: 83 VFVDTVGLPDTYQERLQQRFPGIEVTVKAKADALFPVVS---------------AASICA 127
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV+RD A+K+W F E +Q + +GSGYP DP TK +L +++DPVFGFPQ VRFSW TA
Sbjct: 128 KVARDQAVKNWQFVEELQDLDVDYGSGYPNDPKTKSWLKKHVDPVFGFPQFVRFSWRTAQ 187
Query: 272 KILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEER--HAFFKE 327
IL+++A V ++ EE+EG + T FF+ E P R H +F+E
Sbjct: 188 AILEKEAEAVTWEDSSPEEQEGPGRIT---SYFFQ-------EGPRTRPRPLHRYFQE 235
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCP 65
DN+ + S +P C+ +PCVLG+DEAGRGPVLGPMVY YCP
Sbjct: 8 KDNTGRCRLKSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCP 53
>gi|401825683|ref|XP_003886936.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
gi|392998093|gb|AFM97955.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
Length = 239
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 132/255 (51%), Gaps = 35/255 (13%)
Query: 23 SRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
S+N+ SS + E+ S+ V+GIDEAGRGPV+G MVYG PK L+ G DSK
Sbjct: 3 SKNIFFSS-LEET--SEEVVIGIDEAGRGPVIGYMVYGALVAPKSA----LEATGFRDSK 55
Query: 83 ALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV 142
LT +R I KE + G++ P+ I M++ + +L+ +S + ++ ++
Sbjct: 56 VLTPAQRHCFFQMI-KEKGF-GYIYHCTHPDYI-TEMMQLRSTTLDRISIASVFQILDEI 112
Query: 143 IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
V VYVDT+G E YK KL+ +P + + KADS +
Sbjct: 113 KTKCKKVEAVYVDTLGDCEKYKSKLNASYPYRFV----------------VEKKADSKFQ 156
Query: 203 VVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL 262
VV ASI AKV RD + + N GSGYP DP T ++L N + VFGFP
Sbjct: 157 VVSGASIVAKVQRDVLISEF---------GNDLGSGYPSDPDTVEWLKRNANVVFGFPPG 207
Query: 263 VRFSWSTASKILKEK 277
VR+SWSTA KIL E+
Sbjct: 208 VRYSWSTAKKILGER 222
>gi|320591391|gb|EFX03830.1| ribonuclease hi large subunit [Grosmannia clavigera kw1407]
Length = 304
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 108/204 (52%), Gaps = 23/204 (11%)
Query: 81 SKALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQKYS---LNEVSHD 133
S L+ R ++ ++C+ + L GW +S I ML + LN + D
Sbjct: 44 SPVLSADTRASLMAALCRPGSSLHRSCGWATAALSARDIGADMLAPASAAGSNLNAQAAD 103
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
A + LIR V+A GV V +VYVDTVGPP +Y+KKL +FP L ITVA K
Sbjct: 104 ATVALIRGVLARGVRVTDVYVDTVGPPATYQKKLERVFPGLRITVAKK------------ 151
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNA-WGSGYPGDPVTKKFLSEN 252
ADS YP V AAS+CAKV+RD AL + G + WGSGYP D +L N
Sbjct: 152 ---ADSLYPCVSAASVCAKVTRDVALAVLYRRYGAASASEPDWGSGYPSDGRCTAWLRRN 208
Query: 253 IDPVFGFPQLVRFSWSTASKILKE 276
I PVFG+ RFSW TA +L++
Sbjct: 209 IHPVFGWGPECRFSWGTAKDLLED 232
>gi|342184180|emb|CCC93661.1| putative ribonuclease H [Trypanosoma congolense IL3000]
Length = 322
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 157/323 (48%), Gaps = 41/323 (12%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
C VLGIDEAGRGPV+GPMVY A ++ L+ G DSK L+E +R +
Sbjct: 35 CTENNMVLGIDEAGRGPVIGPMVYAGAMIALHEHDRLVDYCGANDSKVLSEDQRKGVASK 94
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR-EVYV 154
+ + + V +++P+ I +M +LN +SH A+ +I K+ G+ + ++
Sbjct: 95 LNELKTFRTCTV-VVTPDEIAAAMTGIHGTNLNTLSHQVAMSIISKLTLEGMGMLCAAFI 153
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DTVGPPE+Y++KLS FP L ITV + KA+ +P+V AAS+ AK+
Sbjct: 154 DTVGPPETYQQKLSGRFPHLRITV---------------SKKAELKFPIVAAASVVAKLE 198
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL---VRFSWSTAS 271
RDS ++ GI + GSGYP DP ++ ++ F P++ VR SW
Sbjct: 199 RDSHIERL----GIDV-----GSGYPSDPKVMTWVRSHVHRFFVVPRVHKFVRLSWGPVV 249
Query: 272 KILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKESPYG 331
++ + V +D + + E K+++ + K V+ P RH+ +
Sbjct: 250 QLANDPETCVPIVFEEDAKSKVEKKQSKGATDGKKQCLLSFVKPP--PRRHSVYT----- 302
Query: 332 GSKVFEVLNSTYLNILEMAHFIG 354
+L +++++ H +G
Sbjct: 303 -----HLLKLKIISVIQDTHHVG 320
>gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 138/269 (51%), Gaps = 29/269 (10%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
C VLGIDEAGRGPV+GPMVY A ++ LL+ G DSK L E +R D+L
Sbjct: 35 CTENHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCK 94
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYV 154
+ + + + V +++P I +M +LN +SHD AI +I K + A + Y+
Sbjct: 95 LQELKTFSTFTV-VVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYI 153
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DTVGPPESY+++LS FP L ITVA KA++ +P+V AA AKV
Sbjct: 154 DTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVV---------------AKVE 198
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTAS 271
RD ++ GI + GSGYP DP ++ ++ F P+ VR SW
Sbjct: 199 RDRHIERL----GIDV-----GSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVV 249
Query: 272 KILKEKAVLVEGDEIDDEEEEGENKKTRS 300
++ K K V V +D + + E K+ S
Sbjct: 250 ELAKNKDVCVPILFEEDAKTKAEKKRATS 278
>gi|407835034|gb|EKF99119.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 137/269 (50%), Gaps = 29/269 (10%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
C VLGIDEAGRGPV+GPMVY A ++ LL+ G DSK L E +R D+L
Sbjct: 35 CTENHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCK 94
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYV 154
+ K + + V +++P I +M +LN +SHD AI +I K + A + Y+
Sbjct: 95 LQKLKTFSTFTV-VVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYI 153
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DTVGPPESY+++LS FP L ITVA KA++ +P+V AA AKV
Sbjct: 154 DTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVV---------------AKVE 198
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTAS 271
RD ++ GI + GSGYP DP ++ ++ F P+ VR SW
Sbjct: 199 RDRHIERL----GIDV-----GSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVV 249
Query: 272 KILKEKAVLVEGDEIDDEEEEGENKKTRS 300
++ K V V +D + + E K+ S
Sbjct: 250 ELAKNTDVCVPILFEEDTKTKAEKKRATS 278
>gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS]
gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 354
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 18/206 (8%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPVLGPMVY + N E++ +G DSK L+ R+ + I KE+
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT---TNTEVISTMGFHDSKILSRTMREKLFTDI-KESGV 72
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPE 161
G+ I++P+ I M QK SLNE++ A +I ++I + + +Y DTVGP +
Sbjct: 73 CGFSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSK 132
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y+ ++ F E+ ++ + + KAD YPVV AASICAKV+RD+ L +
Sbjct: 133 KYQAMIANEFKEVKLSQIT------------VCPKADGLYPVVSAASICAKVTRDTCLDN 180
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKK 247
W ++E I+ G GYP D T K
Sbjct: 181 WIYEE-TNIQTRQVGCGYPSDVDTIK 205
>gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
Length = 235
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 138/252 (54%), Gaps = 39/252 (15%)
Query: 23 SRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
S+NL SS + +S K ++G+DEAGRGPV+G MVY DN + LK DSK
Sbjct: 3 SQNLSFSS-LKKSDKR--VIVGVDEAGRGPVIGYMVYCVMVFEVDNVPKNLK-----DSK 54
Query: 83 ALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV 142
LTEK R+DI ++ N + + P+ I ML +LN++S + + L++ V
Sbjct: 55 MLTEKMRNDIFVTLKDYN----YAYTALHPSYITTKML--SNVNLNDISWNTVLNLLKLV 108
Query: 143 IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
A N+ +++D +G + KL E F EL I + SKADS YP
Sbjct: 109 CNAYTNIEGIFIDAIGTCD----KLKE-FLELNIKHK-----------CTVESKADSKYP 152
Query: 203 VVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL 262
VV ASI AKV+RD L + N ++GSGYP DPVTKK+L++ ++ +FG+ +
Sbjct: 153 VVSGASIVAKVTRDDLLSKF---------NISFGSGYPSDPVTKKWLTKEVNYIFGWGKS 203
Query: 263 VRFSWSTASKIL 274
VR++W+TA IL
Sbjct: 204 VRYTWNTAKNIL 215
>gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449329688|gb|AGE95958.1| ribonuclease HII family protein [Encephalitozoon cuniculi]
Length = 239
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 132/255 (51%), Gaps = 35/255 (13%)
Query: 23 SRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
S+N+ SS + V+GIDEAGRGPV+G MVYG P+ +L+++G DSK
Sbjct: 3 SKNIFFSSF---GQIEEEVVVGIDEAGRGPVVGYMVYGALVVPRG----VLEDVGFKDSK 55
Query: 83 ALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV 142
LT +R + I K+ G+ P+ I M++ + SLNEVS + + ++ +V
Sbjct: 56 VLTPAQRYNFFQMIKKKG--FGYAYHCSHPDYI-TEMMQVRSVSLNEVSIGSVLRILDEV 112
Query: 143 IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
+ V +YVD +G YK++L + +P + + +ADS +
Sbjct: 113 QSKCRRVDTIYVDALGDCRKYKERLEKDYPYRFV----------------VEERADSKFQ 156
Query: 203 VVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL 262
VV ASI AKV RD + + GSGYP DP T ++L +NI+ VFGFP
Sbjct: 157 VVSGASIVAKVQRDMLISEF---------GEDLGSGYPSDPETIRWLRKNINVVFGFPPG 207
Query: 263 VRFSWSTASKILKEK 277
VR+SW+T K+L E+
Sbjct: 208 VRYSWATVKKMLGER 222
>gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 136/269 (50%), Gaps = 29/269 (10%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
C VLGIDEAGRGPV+GPMVY A ++ LL+ G DSK L E +R D+L
Sbjct: 35 CTENHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCK 94
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYV 154
+ K + + V ++P I +M +LN +SHD AI +I K + A + Y+
Sbjct: 95 LQKLKTFSTFTV-FVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYI 153
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DTVGPPESY+++LS FP L ITVA KA++ +P+V AA AKV
Sbjct: 154 DTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVV---------------AKVE 198
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTAS 271
RD ++ GI + GSGYP DP ++ ++ F P+ VR SW
Sbjct: 199 RDRHIERL----GIDV-----GSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVV 249
Query: 272 KILKEKAVLVEGDEIDDEEEEGENKKTRS 300
++ K V V +D + + E K+ S
Sbjct: 250 ELAKNTDVCVPILFEEDAKTKAEKKRATS 278
>gi|407397482|gb|EKF27762.1| ribonuclease H, putative [Trypanosoma cruzi marinkellei]
Length = 289
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 128/244 (52%), Gaps = 29/244 (11%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
C VLGIDEAGRGPV+GPMVY A ++ LL+ G DSK L E +R D+L
Sbjct: 35 CTENHMVLGIDEAGRGPVVGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCK 94
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYV 154
+ K + + V +++P I +M +LN +SHD AIG+I K + A + Y+
Sbjct: 95 LQKLKTFSTFTV-VVTPAEIAAAMTGIHGKNLNTLSHDTAIGIISKATLEATGMLCGAYI 153
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DTVGPPESY+++LS FP L ITVA KA++ +P+V AA AKV
Sbjct: 154 DTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVV---------------AKVE 198
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTAS 271
RD ++ + GI + GSGYP DP ++ ++ F P+ VR SW
Sbjct: 199 RDRHIE----RLGIDV-----GSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVV 249
Query: 272 KILK 275
+ K
Sbjct: 250 DLAK 253
>gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 326
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 143/285 (50%), Gaps = 39/285 (13%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
C V+GIDEAGRGPV+GPMVY A ++ L+ G DSK L E +R ++
Sbjct: 35 CSENHLVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSK 94
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV-REVYV 154
+ E A +++P+ I +M +LN +SH AI +I K+ G+ + YV
Sbjct: 95 L-HELATFRTFTVVVTPDEIAAAMTGAHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYV 153
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DTVGPPESY++KLS FP L +TVA KA+ +P+V AA AKV
Sbjct: 154 DTVGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVV---------------AKVE 198
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTAS 271
RDS ++ GI + GSGYP DP ++ ++ F P+ VR SW+ +
Sbjct: 199 RDSHIERL----GIDV-----GSGYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVT 249
Query: 272 KILKEK----AVLVEGDEIDDEEEE-----GENKKTRSIRNFFKP 307
++ + ++ E D +E + G+ KK + + +F KP
Sbjct: 250 QLANDPETCIPIVFEEDTTPKKERKQSKCSGDGKKQK-LLSFVKP 293
>gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972]
Length = 326
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 143/285 (50%), Gaps = 39/285 (13%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
C V+GIDEAGRGPV+GPMVY A ++ L+ G DSK L E +R ++
Sbjct: 35 CSENHLVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSK 94
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV-REVYV 154
+ E A +++P+ I +M +LN +SH AI +I K+ G+ + YV
Sbjct: 95 L-HELATFRTFTVVVTPDEIAAAMTGVHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYV 153
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
DTVGPPESY++KLS FP L +TVA KA+ +P+V AA AKV
Sbjct: 154 DTVGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVV---------------AKVE 198
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTAS 271
RDS ++ GI + GSGYP DP ++ ++ F P+ VR SW+ +
Sbjct: 199 RDSHIERL----GIDV-----GSGYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVT 249
Query: 272 KILKEK----AVLVEGDEIDDEEEE-----GENKKTRSIRNFFKP 307
++ + ++ E D +E + G+ KK + + +F KP
Sbjct: 250 QLANDPETCIPIVFEEDTTPKKERKQSKCSGDGKKQK-LLSFVKP 293
>gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
Length = 381
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 23/189 (12%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVY Y P ++ LLK DSK LT R ++ +C
Sbjct: 43 PCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCT 102
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRKVIAAGVNVRE 151
++ L G+ +SP I + ML+ K Y+LN+ + DA I LI+ + GVNV +
Sbjct: 103 KDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNVTD 162
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+++DT+G P +Y+KKL +FP ITVA KA DS YPVV AAS+ A
Sbjct: 163 IFIDTIGQPAAYQKKLERVFPTAKITVAKKA---------------DSLYPVVSAASVVA 207
Query: 212 KVSRDSALK 220
KV+RD AL+
Sbjct: 208 KVTRDIALE 216
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 234 AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEG 293
AWGSGYP D +L +N+ PVFG+ RFSW TA +L+ K G ++D E
Sbjct: 289 AWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTAKDMLETKG----GVKVD--WPEE 342
Query: 294 ENKKTRSIRNFFKPKADE 311
E ++T+ + +FF K D+
Sbjct: 343 EEEETQKLTDFFMAKRDQ 360
>gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348]
gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348]
Length = 252
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 134/261 (51%), Gaps = 42/261 (16%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S I E+ ++ ++GIDEAGRGPV+GPMVY AY N + + + DSK LT R
Sbjct: 5 SNIKET--TEEVIVGIDEAGRGPVIGPMVYA-AYVMHTNERRIRQFI---DSKQLTPNTR 58
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ ++ + + +I P I M K +LN+++ +A + L+ ++ NV
Sbjct: 59 KNYYATM------MNFAYIVIEPIYITTYMNNHIK-NLNQIAEEAVVQLLNEINNKCKNV 111
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ VY+D +G +YKK L F I +KAD+TY VV AASI
Sbjct: 112 KMVYIDALGNVSNYKKNLQAHFK----------------FNFTIEAKADATYEVVSAASI 155
Query: 210 CAKVSRDSALKSWT------------FQEGIQIEN-NAWGSGYPGDPVTKKFLSENIDPV 256
AK++RD+ S T ++E I++ N GSGYP DP T+++L +N P+
Sbjct: 156 VAKINRDAFFSSKTNNIHENYYTKLGYEELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPI 215
Query: 257 FGFPQLVRFSWSTASKILKEK 277
GF +VR SWST +L ++
Sbjct: 216 SGFNSIVRHSWSTIQSLLGKR 236
>gi|238490075|ref|XP_002376275.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
gi|220698663|gb|EED55003.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
Length = 273
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 129/256 (50%), Gaps = 41/256 (16%)
Query: 82 KALTEKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAA 135
K LT R +++ +C L GW +++S I + M+R Y+LN + DA
Sbjct: 31 KVLTPGVRANLMRLLCTPGTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDAT 90
Query: 136 IGLIRKVI-AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIA 194
+ LIR+++ V++REVY+DT+G P +Y++KL IFP L ITVA KA
Sbjct: 91 VELIREIVEGRKVDIREVYIDTIGNPATYQQKLERIFPSLKITVAKKA------------ 138
Query: 195 SKADSTYPVVGAASICAKVSRDSAL--------KSWTFQEGIQIENN-AWGSGYPGDPVT 245
DS YP V AAS+ AKV+RD AL K+ F + Q + +WGSGYP D
Sbjct: 139 ---DSLYPCVSAASVAAKVTRDVALELCHEDIVKAQQFDDPSQATSTESWGSGYPSDSKC 195
Query: 246 KKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDE----------EEEGEN 295
+L N+DP+FG+ RFSW T+ ++L+ K + DDE E
Sbjct: 196 VGWLRRNMDPIFGWGNECRFSWGTSKEMLEMKGGVKVDWPPDDENTQLRDFLLTSSEAPK 255
Query: 296 KKTRSIRNFFKPKADE 311
+ +R++F K E
Sbjct: 256 GTNQELRDWFGQKTTE 271
>gi|336258469|ref|XP_003344047.1| hypothetical protein SMAC_08904 [Sordaria macrospora k-hell]
gi|380087310|emb|CCC14315.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 397
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 109/189 (57%), Gaps = 23/189 (12%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVY Y P ++ LLK DSK LT R ++ +C
Sbjct: 51 PCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCT 110
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRKVIAAGVNVRE 151
+ L G+ +SP I + ML+ K Y+LN+ + DA I LI+ + GVNV +
Sbjct: 111 KETELHDNCGYATSSLSPLSISSGMLKASKSQIYNLNQQAMDATIELIKGIYKRGVNVTD 170
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+++DT+G P +Y+KKL +FP ITVA KA DS YPVV AAS+ A
Sbjct: 171 IFIDTIGQPAAYQKKLERVFPTAKITVAKKA---------------DSLYPVVSAASVVA 215
Query: 212 KVSRDSALK 220
KV+RD AL+
Sbjct: 216 KVTRDIALE 224
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 231 ENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEE 290
E AWGSGYP D +L +N+ PVFG+ RFSW TA +L+ K +G ++ D
Sbjct: 301 EAMAWGSGYPSDSKCVTWLKQNMHPVFGWGPECRFSWGTAKDMLETK----DGVKV-DWP 355
Query: 291 EEGENKKTRSIRNFFKPKADENVESPVVEERHAFF 325
EE E+++T+ + +FF K D + E+ V+E +F
Sbjct: 356 EEEEDEETQKLTDFFMAKRDSSEEN--VDELGTWF 388
>gi|340057120|emb|CCC51462.1| putative ribonuclease H [Trypanosoma vivax Y486]
Length = 378
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 155/300 (51%), Gaps = 33/300 (11%)
Query: 7 ASNVTEVESCIRSNDNSR-NLIISSTIPE-SCKSQPCVLGIDEAGRGPVLGPMVYGTAYC 64
+S T+ ES + S +SS + E C V+GIDEAGRGP++GPMVY A
Sbjct: 60 SSTATDKESGVPGRSRSGVEFDVSSFMQELGCTESHMVMGIDEAGRGPIIGPMVYVGAMI 119
Query: 65 PKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQK 124
++ LL + G DSK L E +R+ +L + + + + + +I+P+ I +M
Sbjct: 120 ALHEHDLLLTHCGANDSKVLDENQREVVLQKLSELKTFRTFTI-VITPDEIAAAMTGIHG 178
Query: 125 YSLNEVSHDAAIGLIRKVI--AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKA 182
+LN +SH+AA +I ++ AAG+ + YVDTVGPPE Y+ KLS FP L + V+ +A
Sbjct: 179 INLNTLSHNAATSIISQLTLQAAGM-LCAAYVDTVGPPEKYESKLSGRFPHLRVKVSKQA 237
Query: 183 DSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGD 242
+S +P+V AA AKV RD ++ + G+ + GSGYP D
Sbjct: 238 ESKFPIVAAASVV---------------AKVKRDGYIR----RLGVDV-----GSGYPSD 273
Query: 243 PVTKKFLSENIDPVFGFPQ---LVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTR 299
P ++ ++ F P+ VR SWS ++ KE+ V + +D + + E K +R
Sbjct: 274 PKAVAWVRSHVHRFFMVPRKYNFVRLSWSPVMQLGKEEGVCIPLVFEEDTKTKIEKKNSR 333
>gi|440795142|gb|ELR16278.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 241
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 118/220 (53%), Gaps = 25/220 (11%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGP +GPM+Y AYCP D E K G DSK + +RD + ++ E+
Sbjct: 1 MGIDEAGRGPTMGPMIYACAYCPVDKQEAYRKR-GYRDSKDVKPAERDRLFAALL-EDPD 58
Query: 103 LGWMVEIISPNVICNSMLRR-QKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G+ I S I N+ + +LNEVS+D A GL R V+A G+N+ E+YVD +G
Sbjct: 59 VGFRSGIASAEEISNANYSHTENRNLNEVSYDPATGLNRDVLATGINLAELYVDALGNCA 118
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ L +FP + V + SKAD YP+V ASI K RD ++
Sbjct: 119 T----LQRLFPSICTIV--------------LESKADVNYPIVSVASIVTKTLRDGITEN 160
Query: 222 WTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
F+E I I+ N +G+GYP P K +L N D +FG P
Sbjct: 161 LPFKECDITIDRN-YGNGYPSTPAVKDWL-RNQD-LFGLP 197
>gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
Length = 158
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++I+SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQ 127
Query: 141 KVIAAGVNVRE 151
+ V V +
Sbjct: 128 HAMDQNVKVTQ 138
>gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis]
Length = 174
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 17/164 (10%)
Query: 130 VSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV 189
+SH+AAI +I +++ V V EVY+DTVGP Y+ KL++ F + +
Sbjct: 1 MSHNAAISMISELLRMKVRVSEVYIDTVGPAAKYEAKLNQTF-------------NFTNI 47
Query: 190 GAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIEN--NAWGSGYPGDPVTKK 247
+A KADS Y V AASI AK RD+ ++ ++E + GSGYP DP+T +
Sbjct: 48 KFKVAPKADSLYKCVSAASIVAKTHRDAIIEQHPWEEPCMQDRLIGKLGSGYPSDPMTVQ 107
Query: 248 FLSENIDPVFGFPQLVRFSWSTASKILKEK--AVLVEGDEIDDE 289
FL +DPVFGFP +RFSWSTAS++L+EK A ++ +E++ E
Sbjct: 108 FLESVMDPVFGFPTFIRFSWSTASRMLQEKQAAPVIWKNEVEKE 151
>gi|449691976|ref|XP_004212862.1| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 127
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 88/145 (60%), Gaps = 19/145 (13%)
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+YVDTVG Y+ KLSE+F V + KAD+ +P+V AASICA
Sbjct: 1 MYVDTVGDASKYQNKLSEVFDG---------------VSVKVTPKADALFPIVSAASICA 45
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV+RD ++ W F EG E+ +GSGYP DP TK++L + +DPVFGFPQ VRFSWST
Sbjct: 46 KVARDRCIQGWQFPEGDIKED--YGSGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCV 103
Query: 272 KILKEKAVLVEGDEIDDEEEEGENK 296
IL++ A V + DDE EE + K
Sbjct: 104 NILEKHACEVMWE--DDEAEETDKK 126
>gi|429962741|gb|ELA42285.1| ribonuclease HII [Vittaforma corneae ATCC 50505]
Length = 232
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 123/256 (48%), Gaps = 43/256 (16%)
Query: 22 NSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADS 81
N N S IP + + GIDEAGRGPV+GPMVYG Y +N K DS
Sbjct: 3 NKLNEFYSCIIPTK---EIIMAGIDEAGRGPVVGPMVYGL-YVASENEISHYK-----DS 53
Query: 82 KALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK 141
K LT R+ ++ + + I P I +S + +LNE++ +A I L++
Sbjct: 54 KLLTPVAREHFFKNMRNYSCYK------IHPAYI-SSHMEAGSMNLNEIAKEAVIYLLKD 106
Query: 142 VIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
+++ NV+ VY+D +G E YKK L + F + I +KADS Y
Sbjct: 107 LVSKCPNVKTVYIDGLGNNEEYKKTLKKYFS----------------LNFVIENKADSKY 150
Query: 202 PVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ 261
VV ASI AKV RD+++ + GSGY DP+TK++L + GFP
Sbjct: 151 QVVSGASIVAKVVRDASVARYN-----------CGSGYTSDPITKEWLKSKYNKFLGFPD 199
Query: 262 LVRFSWSTASKILKEK 277
VR SWST +L K
Sbjct: 200 YVRHSWSTVKDMLPSK 215
>gi|401419840|ref|XP_003874409.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 316
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 133/266 (50%), Gaps = 35/266 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRG V+GPMVY A ++EL++ AD K + R L + +
Sbjct: 46 VLGIDEAGRGSVIGPMVYTGAVISLGEHDELVRLCHVADRKMPNVRPRLASLQKLRQLKT 105
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYVDTVGPP 160
+ + V +S I N+M +LN +SH+ AI +I + +A+ + YVDTVGPP
Sbjct: 106 FRSFTV-FVSSEEISNTMAGHNGRNLNALSHETAIQIISEATLASAGKLCAAYVDTVGPP 164
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+Y+ +L+ FP L +TVA KA+S +P+V AAS+ AK +RD+A++
Sbjct: 165 GTYQARLAGRFPHLRVTVA---------------KKAESKFPIVSAASVVAKTARDAAIE 209
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQL---VRFSWSTASKILKEK 277
+ E I GSGY DP T +L + F F VR SW ++ +
Sbjct: 210 A--LGENI-------GSGYLIDPRTMAWLRSPVHRCFAFSHAYDSVRQSWGPVVQLANDS 260
Query: 278 AVLV------EGDEIDDEEEEGENKK 297
AV V + +E + G+N++
Sbjct: 261 AVCVPVVFEQDPEEASQQGGGGDNRQ 286
>gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi]
gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 133
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRGPVLGPMVY YC K++ E+LLK + DSK ++E R+ + +
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKED-EKLLKEMKIDDSKKISENDREKMFYKLNNSTLP 77
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
GW V ++ P I ML++QKY+LNE+SHD AI +I+ V++ G N+ EV+VDTVG
Sbjct: 78 FGWRVHVLMPQDISAKMLKKQKYNLNEISHDTAISIIQHVLSRGCNLTEVFVDTVG 133
>gi|146103342|ref|XP_001469539.1| putative ribonuclease H [Leishmania infantum JPCM5]
gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5]
Length = 316
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 136/274 (49%), Gaps = 33/274 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGI EAGRG V+GP+ Y A +++L++ ADSK L E++R L +
Sbjct: 46 VLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVRLCHVADSKTLDERRRLASLQQLRLLKT 105
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYVDTVGPP 160
+ + V +SP I ++ R +LN +SH+ AI +I K +A+ + YV T GPP
Sbjct: 106 FRSFTV-CVSPEEISKTITGRSGRNLNTLSHETAIQIISKATLASAGKLCAAYVGTAGPP 164
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+Y+++L+ FP L +TVA KA DS +P+V AASI AK +RD+A++
Sbjct: 165 ATYQERLAGRFPHLRVTVAKKA---------------DSQFPIVSAASIVAKTTRDTAIE 209
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTASKILKEK 277
+ EN GS P DP T + L ++ F FP VR S ++
Sbjct: 210 ALG-------EN--IGSRCPSDPRTMERLRSHVHRFFVFPHAYDFVRHSREPVVQLANGP 260
Query: 278 AVLVE---GDEIDDEEEEGENKKTRSIR-NFFKP 307
AV V ++ ++G +R + +F KP
Sbjct: 261 AVCVPVAFEQVLEKARQQGRGGDSRQQKLSFAKP 294
>gi|317765021|ref|NP_001187891.1| ribonuclease h2 subunit a [Ictalurus punctatus]
gi|308324252|gb|ADO29261.1| ribonuclease h2 subunit a [Ictalurus punctatus]
Length = 108
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 57 MVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVIC 116
MVYG +CP E L KNL ADSK L+E +R+++ + K ++GW ++I+SPN I
Sbjct: 1 MVYGICFCPVSRKENL-KNLKVADSKTLSEAERENLFLKLDKAKGFVGWALQILSPNTIS 59
Query: 117 NSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKK 165
SML+R KY+LN +SHDAAIGL++ + GV ++EV+VDTVGP E Y++
Sbjct: 60 TSMLQRAKYNLNALSHDAAIGLVQYALDCGVQLKEVFVDTVGPAEKYEE 108
>gi|398024050|ref|XP_003865186.1| ribonuclease H, putative [Leishmania donovani]
gi|322503423|emb|CBZ38508.1| ribonuclease H, putative [Leishmania donovani]
Length = 316
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 33/274 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGI EAGRG V+GP+ Y A +++L++ ADSK L E++R L +
Sbjct: 46 VLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVQLCHVADSKTLDERRRLASLQQLHLLKT 105
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-VIAAGVNVREVYVDTVGPP 160
+ + V +SP ++ R +LN +SH+ AI +I + +A+ + YV T GPP
Sbjct: 106 FRSFTV-CVSPEEFSKTITGRSGRNLNTLSHETAIQIISEATLASAGKLCAAYVGTAGPP 164
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+Y++ L+ FP L +TVA KA DS +P+V AASI AK +RD+A++
Sbjct: 165 ATYQEGLAGRFPHLRVTVAKKA---------------DSQFPIVSAASIVAKTTRDTAIE 209
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ---LVRFSWSTASKILKEK 277
+ EN GS P DP T + L ++ F FP VR S ++
Sbjct: 210 ALG-------EN--IGSSCPSDPRTMERLRSHVHRFFVFPHAYDFVRHSREPVVQLANGP 260
Query: 278 AVLVE---GDEIDDEEEEGENKKTRSIR-NFFKP 307
AV V ++ ++G +R + +F KP
Sbjct: 261 AVCVPVAFEQVLEKARQQGRGGDSRQQKLSFAKP 294
>gi|224110154|ref|XP_002315431.1| predicted protein [Populus trichocarpa]
gi|222864471|gb|EEF01602.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 119/245 (48%), Gaps = 39/245 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGR P L + T C + L + AL K R D + K N
Sbjct: 1 MGIDEAGRVPDL----WCTDACTVLAHMRRL-----SLPSALQRKGRSDFEN--LKANES 49
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+GW V++ P + ML++ K +LNE+SHD+A GL+ +V+ GV + EV VDTVG PE
Sbjct: 50 IGWAVDVNDPRELSAKMLKKNKINLNEISHDSASGLVNRVLNMGVLLTEVCVDTVGDPEK 109
Query: 163 YKKKLSEIFPELIITVASKADSTYPVV-GAAIASKADSTYPV------VGAASICAKVSR 215
Y+ KLSE FP + VA KA S YPVV GA+I +K ++P + C
Sbjct: 110 YRIKLSESFPFVKFVVAKKAGSLYPVVSGASIVAKVVISHPFDSLNFRLQEIGPCEDGYL 169
Query: 216 DSALKSWT---------FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
LK+W F +QI G +++ VFGFP LVRFS
Sbjct: 170 MKQLKTWLGILDLDTLEFYCCVQILKLKLG------------WNKHEHSVFGFPTLVRFS 217
Query: 267 WSTAS 271
W T +
Sbjct: 218 WGTCT 222
>gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242]
gi|121691891|sp|Q12YN9.1|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242]
Length = 213
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 119/239 (49%), Gaps = 33/239 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAG+GPV+GPM G +D + L KNLG ADSK L+ K+R + I K
Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNAL-KNLGVADSKKLSPKRRVHLAAQIKKYAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR-----KVIAAGVNVREVYVDT 156
GW V +SPN I R+ S+N++ A +I K+ A +V+E
Sbjct: 62 --GWFVYEVSPNQIDE---LRKLMSMNDIMVLAFGSVIEELPSDKIYADAADVKE----- 111
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
E + K+L + + E D + P V + AD +PVV AASI AKV RD
Sbjct: 112 ----ERFGKRLFDNYME------KHPDVSPPEVISK--HGADDLFPVVSAASILAKVRRD 159
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
++ G+ I GSGYP DP TKKFL FP +VR SW TA K ++
Sbjct: 160 ELIEKIKVDMGVDI-----GSGYPSDPKTKKFLENWYRENSSFPDIVRHSWKTAQKFIQ 213
>gi|435851233|ref|YP_007312819.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
gi|433661863|gb|AGB49289.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
Length = 216
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 42/246 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G K + L KNLG ADSK LT KKR+ + I K A
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVLADKGKLDSL-KNLGVADSKKLTPKKREHLAHQINK-YA 60
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR----------KVIAAGVNVRE 151
++ E+ SP+ I R+ S+N++ +G R V AA VN
Sbjct: 61 HKVYVFEV-SPSQIDE---LRKVMSMNQI---MVLGFSRVLEELQPDMAYVDAADVNAAR 113
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+ Y KK E EL TV S+ +AD+TYP+V AASI A
Sbjct: 114 FGTNLKA---QYAKKYPEKSEEL--TVVSE-------------HQADATYPIVSAASIVA 155
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV RD +K + GI + GSGYP DP TK+FL + P VR SW TA
Sbjct: 156 KVRRDELVKELINRIGIDL-----GSGYPSDPKTKRFLEDWSREHGTLPDFVRHSWKTAL 210
Query: 272 KILKEK 277
+LKEK
Sbjct: 211 NVLKEK 216
>gi|47213806|emb|CAF92579.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
+DNS + ++S IP++C+++ C LGIDEAGRGPVLGPMVYG +CP +E LK+L A
Sbjct: 8 SDNSVSCRLTSPIPDACRAEECCLGIDEAGRGPVLGPMVYGICFCPISRKDE-LKDLKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRR 122
DSK LTE +R+ + + + + +++GW ++++SPN I SML+R
Sbjct: 67 DSKTLTEAEREALFEKLDEAKSYIGWALQVLSPNTISTSMLQR 109
>gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus]
Length = 142
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLG+DEAGRGPVLGPMVY YCP +L + L ADSK LTE +R+ + + ++
Sbjct: 1 VLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVADSKTLTENERERLFAKMEEDGD 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE 151
++GW ++++SPN+I SML R KY+LN +SHD A GLI+ + VNV +
Sbjct: 60 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQ 109
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 204 VGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
A I + ++ + W F E +Q ++ +GSGYP DP TK +L +++D
Sbjct: 92 TAAGLIQYALDQNVNVTQWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVD 142
>gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6]
gi|238686969|sp|A9A9T9.1|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6]
Length = 239
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 40/246 (16%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL--LKNLGCADSKALTEKKRDDI--- 92
S ++G+DEAGRGPV+GPMV + K N ++L L++LG DSK L++KKR+++
Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASV---KINEKDLYKLQDLGLKDSKQLSKKKREELYVK 72
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ IC +I+P I M + +LN++ A L I N+ +
Sbjct: 73 ISEICNVKKI------VIAPEKIDEQM---EITNLNKIELSAFSKLANHFIKENENIS-I 122
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+D E + S F KA V KAD Y +V AASI AK
Sbjct: 123 YIDACSSNE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAK 170
Query: 213 VSRDSALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
V+RD+ ++ + TF E GSGYP DP TKKFL + + G P++ R SW+T+
Sbjct: 171 VTRDNVIEEYKKTFGE--------IGSGYPSDPKTKKFLKKYVHENKGLPKIARKSWATS 222
Query: 271 SKILKE 276
+LKE
Sbjct: 223 KNLLKE 228
>gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
Length = 233
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 20/235 (8%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAGRGPVLGPMV A+ + + E+LL++LG DSK L++ KR + K+
Sbjct: 5 IVGVDEAGRGPVLGPMVV-CAFAIEKDREDLLRDLGVKDSKLLSKSKRS----QLKKQLE 59
Query: 102 WLGWMVE-IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT-VGP 159
+G++ + I++ N I N+++ K +LNE+ +A +I +I +N+++ Y++ V
Sbjct: 60 RIGYVKKKILTANEI-NTLM--NKINLNEIEINAFSEVIMGLIN-DLNLKDEYLEIYVDA 115
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ KK I + ++ + V+ KAD YP+V +ASI AK RD +
Sbjct: 116 CSTNAKKFENELKNRIKDIENQKNLKIKVIAE---HKADLKYPIVSSASIIAKADRDEII 172
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + + G GSGYP DP T KFL + + P + R W T +IL
Sbjct: 173 EQYKKKYG------EIGSGYPSDPKTIKFLEKYFEEYGSLPNIARVHWKTCKRIL 221
>gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7]
gi|189043625|sp|A6VGW0.1|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7]
Length = 239
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 115/238 (48%), Gaps = 32/238 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSICK 98
++G+DEAGRGPV+GPMV + +N+ L +LG DSK LT+KKR+++ + IC
Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKI-NENDLPKLHDLGLKDSKQLTKKKREELYIKISEICD 78
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+I P I M + +LN++ A L I N+ +Y+D
Sbjct: 79 VKKI------VIDPEKIDEQM---EIINLNKIELGAFSKLANHFIKENENIS-IYIDACS 128
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
E + S F KA V KAD Y +V AASI AKV+RD+
Sbjct: 129 SNE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNV 176
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
++ + G GSGYP DP TKKFL + G P++ R SW+T+ +LKE
Sbjct: 177 IEEYKEIFG------EIGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKE 228
>gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5]
gi|189043624|sp|A4FWE5.1|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5]
Length = 239
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 120/242 (49%), Gaps = 40/242 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL--LKNLGCADSKALTEKKRDDI---LDSI 96
++G+DEAGRGPV+GPMV + K N ++L L +LG DSK L++KKR+++ + I
Sbjct: 20 IVGLDEAGRGPVIGPMVIASV---KINEKDLPRLDDLGLRDSKQLSKKKREELYTKISEI 76
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
C +I+P I M + +LN++ A L I N+ +Y+D
Sbjct: 77 CDVKKV------VINPEKIDEQM---EIINLNKIELGAFSKLANHFIKENENIS-IYIDA 126
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
E + S F KA V KAD Y +V AASI AKV+RD
Sbjct: 127 CSSNE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRD 174
Query: 217 SALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ ++ + TF E GSGYP DP TKKFL + G P++ R SW+T+ +L
Sbjct: 175 NVIEEYKKTFGE--------IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLL 226
Query: 275 KE 276
KE
Sbjct: 227 KE 228
>gi|340624684|ref|YP_004743137.1| ribonuclease HII [Methanococcus maripaludis X1]
gi|339904952|gb|AEK20394.1| ribonuclease HII [Methanococcus maripaludis X1]
Length = 242
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 119/245 (48%), Gaps = 40/245 (16%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDD---ILDS 95
+ ++G+DEAGRGPVLGPMV + + N +L +L DSK L++KKR++ I++
Sbjct: 20 EKIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKL-NDLELKDSKQLSKKKREELYIIINE 78
Query: 96 ICKENAWLGWMVE--IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+C VE +I P I N M + +LN++ A L I N+ +Y
Sbjct: 79 MCD--------VEKIVIDPETIDNQM---EIINLNKIELSAFSKLSNHFIRENDNIS-IY 126
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+D E + S F KA V KAD Y +V AASI AKV
Sbjct: 127 IDACSSSE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAKV 174
Query: 214 SRDSALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
+RD ++ + TF E GSGYP DP TKKFL + P++ R SW+T+
Sbjct: 175 TRDRVIEEYKETFGE--------IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSK 226
Query: 272 KILKE 276
+LKE
Sbjct: 227 NLLKE 231
>gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB]
gi|189043627|sp|A6UQ18.1|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB]
Length = 244
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 125/257 (48%), Gaps = 36/257 (14%)
Query: 25 NLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKAL 84
NL S P ++ +LG+DEAGRGPVLGPMV + + +++ +L DSK L
Sbjct: 8 NLNESINNPSKILNEKIILGLDEAGRGPVLGPMVISVVKVTEKDLDKI-NSLDLKDSKQL 66
Query: 85 TEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA 144
T+K+R++ + I N +++P I M + +LN++ A L +
Sbjct: 67 TKKRREEYYNII---NECFEVQKIVLAPEKIDEYM---KTSNLNKIELSAFSKLSNHFLK 120
Query: 145 AGVNVREVYVDTVGPPES-----YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
NV+ +++D E +K KL E+I KAD
Sbjct: 121 EYENVK-IFIDACSSSEQSFLNQFKAKLINKKVEIIA-----------------EHKADE 162
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
Y +V AASI AKV+RD+ ++S+ + G GSGYPGDP TK+FL +
Sbjct: 163 KYKIVSAASIIAKVTRDNIIESYKEEFG------DIGSGYPGDPKTKEFLKRFVKEHKKL 216
Query: 260 PQLVRFSWSTASKILKE 276
P++ R SW+T+ K+LKE
Sbjct: 217 PKIARGSWATSKKLLKE 233
>gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
Length = 218
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 116/237 (48%), Gaps = 30/237 (12%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK 98
Q V GIDEAGRGPV+GPMV A N+ LK +G DSK L+ R + +
Sbjct: 2 QVLVGGIDEAGRGPVIGPMVMAIAVT---NDMNRLKAMGIRDSKELSPAGRARLFSILKS 58
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
++ + EI+ P VI N + +LN + + AI LI + + + V+ + VY+D+
Sbjct: 59 TLNYIDY--EIVEPRVIDNYVYMN---ALNILEVEIAIKLINRALNS-VSPQVVYIDSPD 112
Query: 159 P-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P PE Y+ + + VA + AD PVV AASI AKV RDS
Sbjct: 113 PRPERYRDMVKRGVVGNVEVVA--------------MNNADKLIPVVSAASIVAKVIRDS 158
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E + E +GSGYP DP T FL + + P +VR SWST K+L
Sbjct: 159 II------EELHREYGDFGSGYPSDPRTMAFLRDWVKRHGDLPPIVRRSWSTVRKLL 209
>gi|410669623|ref|YP_006921994.1| ribonuclease HII [Methanolobus psychrophilus R15]
gi|409168751|gb|AFV22626.1| ribonuclease HII [Methanolobus psychrophilus R15]
Length = 214
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G +++ LKNLG ADSK LT KKR+ + I E
Sbjct: 3 IAGIDEAGKGPVIGPMCVGGVLM-EESRINALKNLGVADSKKLTPKKREMLALQI--EKY 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L V I+P I R+ ++NE+ + R + NV +VD E
Sbjct: 60 ALQVFVLEITPQQIDE---LRKLMTMNEI---MVLAFSRVLEELHPNV--AFVDAADVSE 111
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
K L++ K + +AD YP+V AASI AKV RDS ++
Sbjct: 112 ERFGK------RLLLEYEKKHSEKAGCMSIISKHQADCIYPIVSAASIVAKVRRDSLIEE 165
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ G+ +GSGYP DP TK+FL + P +VR+SW TA ++K
Sbjct: 166 LKKEIGVD-----FGSGYPSDPKTKQFLQDWFKEHGELPDIVRYSWKTAENVMK 214
>gi|333910258|ref|YP_004483991.1| ribonuclease HII [Methanotorris igneus Kol 5]
gi|333750847|gb|AEF95926.1| ribonuclease HII [Methanotorris igneus Kol 5]
Length = 232
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 27/237 (11%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK 98
+ ++GIDEAGRGPVLGPMV +D +EL ++LG DSK LT+ +R + I +
Sbjct: 4 KKIIIGIDEAGRGPVLGPMVVAGVAVEEDKIKEL-EDLGVKDSKQLTKNQRKKLFQLIGE 62
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+G + II + +++ + SLN++ +A + + E+YVD
Sbjct: 63 ----MGKVKTIIIEPEKLDELMKTK--SLNKIELNAFSKIANGFLKEIEGNFEIYVDACS 116
Query: 159 P-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+++ +L A D + ++ KAD YP+V AASI AKV+RD
Sbjct: 117 SNAKAFANQLR----------AKMIDKSPKIIAE---HKADEKYPIVSAASIIAKVTRDE 163
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
++S+ + G GSGYP DP T FL + ++ P++ R SW TA +IL
Sbjct: 164 IIESYKKEYG------EIGSGYPSDPKTINFLKKYVEEFGELPKIARKSWKTAKRIL 214
>gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3]
gi|7227917|sp|O59351.1|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii
OT3]
Length = 220
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAGRGPV+GP+V G A + N E L+++G DSK LT +R+ + + +
Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVI-DEKNIERLRDIGVKDSKQLTPGQREKLFSKLI--DI 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT--VGP 159
+ V +++P I + +S+NE+ + + + + + +++YVD+ V P
Sbjct: 60 LDDYYVLLVTPKEIDE-----RHHSMNELEAEKFVVALNSL---RIKPQKIYVDSADVDP 111
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
F LI KA Y A KAD+ Y +V AASI AKV+RD +
Sbjct: 112 KR---------FASLI-----KAGLKYEATVIA-EHKADAKYEIVSAASIIAKVTRDREI 156
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ + +GSGYP DP TK++L E FP +VR +W TA KI
Sbjct: 157 ------EKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKI 204
>gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5]
gi|11387114|sp|Q9V1A9.1|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5]
gi|380741273|tpe|CCE69907.1| TPA: ribonuclease HII [Pyrococcus abyssi GE5]
Length = 224
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G DEAGRGPV+GP+V A +D L K LG DSK LT +R+ + D I K
Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTK-LGVKDSKQLTPAQREKLFDEIVK--V 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ V I+SP I +K S+NE+ + ++ + + V +Y+D+
Sbjct: 60 LDDYSVVIVSPQDIDG-----RKGSMNELEVE---NFVKALNSLKVKPEVIYIDSADVK- 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+E F E + S+ VV KAD+ Y +V AASI AKV RD +
Sbjct: 111 ------AERFAE---NIRSRLAYEAKVVAE---HKADAKYEIVSAASILAKVIRDREI-- 156
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E +GSGYP DP TKK+L E FP +VR +W TA KI
Sbjct: 157 ----EKLKAEYGDFGSGYPSDPRTKKWLEEWYSKHGNFPPIVRRTWDTAKKI 204
>gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2]
gi|73917612|sp|Q6LXH7.1|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2]
Length = 242
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 118/245 (48%), Gaps = 40/245 (16%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDD---ILDS 95
+ ++G+DEAGRGPVLGPMV + + N +L +L DSK L++KKR++ I++
Sbjct: 20 EKIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKL-NDLELKDSKQLSKKKREELYIIINE 78
Query: 96 ICKENAWLGWMVE--IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+C VE +I P I M + +LN++ A L I N+ +Y
Sbjct: 79 MCD--------VEKIVIDPETIDKQM---EIINLNKIELSAFSKLSNHFIRENDNIS-IY 126
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+D E + S F KA V KAD Y +V AASI AKV
Sbjct: 127 IDACSSSE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAKV 174
Query: 214 SRDSALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
+RD ++ + TF E GSGYP DP TKKFL + P++ R SW+T+
Sbjct: 175 TRDRVIEEYKETFGE--------IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSK 226
Query: 272 KILKE 276
+LKE
Sbjct: 227 NLLKE 231
>gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
Length = 217
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 30/235 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGPV+GPMV A K + LK +G DSK L+ ++R+++ I +
Sbjct: 1 MGIDEAGRGPVIGPMVVA-AVILKRREAKRLKEMGVTDSKLLSAERREELFPMIIESAE- 58
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+++++I P I ++ K LN + + LIR++ A V VD+ P
Sbjct: 59 -SYLIKVIEPKRIDEAV---SKNMLNLLEAEVMSELIRELRPA-----RVIVDS---PMR 106
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+K S++ E + DS+ ++ +KADS Y V +ASI AKV RD ++
Sbjct: 107 NCRKFSDVLREFL------GDSSVKIIA---ENKADSKYIQVASASIIAKVERDRRIREL 157
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ-LVRFSWSTASKILKE 276
+ G++I GSGYPGDP T++ + + FP+ VR+ W+T +++L+E
Sbjct: 158 SELTGVEI-----GSGYPGDPKTREAIRMILKGA-EFPRDQVRWKWATINRLLEE 206
>gi|374635723|ref|ZP_09707316.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
gi|373561339|gb|EHP87576.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
Length = 234
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 35/246 (14%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
K + ++GIDEAGRGPVLGPMV +D +EL ++LG DSK LT+ +R +
Sbjct: 5 MKDKKIIVGIDEAGRGPVLGPMVVAGVAIEEDKIKEL-EDLGVKDSKQLTKNRRKKLFRL 63
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDA----AIGLIRKVIAAGVNVRE 151
I + +G + II + +++ + +LN++ +A A G ++++ E
Sbjct: 64 IGE----MGKIKTIIIEPEKLDELMKTK--NLNKIELNAFSKIANGFLKEIEGN----FE 113
Query: 152 VYVDTVGP-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
+YVD +++ +L A D T ++ KAD YP+V +ASI
Sbjct: 114 IYVDACSSNAKAFANQLK----------AKMIDKTPKIIAE---HKADEKYPIVSSASII 160
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
AKV+RD ++ + + G GSGYP DP T FL + P++ R SW T+
Sbjct: 161 AKVTRDEIIEHYKKEYG------EIGSGYPSDPKTINFLKHYVGEFGELPKIARKSWKTS 214
Query: 271 SKILKE 276
+IL+E
Sbjct: 215 KRILEE 220
>gi|336476394|ref|YP_004615535.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
gi|335929775|gb|AEH60316.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
Length = 217
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 25/236 (10%)
Query: 42 VLGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ GIDEAG+GPV+GPM + G A ++ +KNL DSK +T KR + I K +
Sbjct: 4 IAGIDEAGKGPVIGPMCIAGVAI--DESKLNTIKNLKVRDSKTVTASKRKEFAYQIKKYS 61
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
W + ISP I R+ ++N++ + ++ K+ + YVD+V
Sbjct: 62 D--DWYIFEISPQQIDE---LRKVMTMNQIMVHGFLKVLNKL-----RPDKAYVDSVDVN 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
SE F + S+++ + +ADS YP+V AASI AKV RD ++
Sbjct: 112 -------SERFGSTLKIKYSESNPGAKQIEIISKHRADSIYPIVSAASIIAKVRRDELIE 164
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ GI +GSGYP DP TKKFL E I FP+ VR SW T ++K+
Sbjct: 165 KIKKEMGID-----FGSGYPSDPKTKKFLEEWICENDSFPEFVRHSWKTCDNLIKK 215
>gi|34395818|sp|Q97CG6.2|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 212
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 107/230 (46%), Gaps = 37/230 (16%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV C EE L+ +G DSK L+ K+R+ + D I K A+
Sbjct: 8 GIDEAGRGPVIGPMVISIVCC----KEEYLREIGVKDSKMLSRKRREYLFDKITKNCAY- 62
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
++V +SP + M SLN++ + + L+ K A G+ VY+D E
Sbjct: 63 SYVV--VSPETLNKDMASE---SLNKIEENYILELLSK--AEGI----VYIDCFDVIEER 111
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+K + S VV KADS YP V AASI +KV RD +
Sbjct: 112 AEKY------------IREKSGKEVV---CKHKADSIYPAVSAASIVSKVIRDREIDKIA 156
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP DP T FL + + + R W T KI
Sbjct: 157 EKYGF------FGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWETYKKI 200
>gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 218
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 107/230 (46%), Gaps = 37/230 (16%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV C EE L+ +G DSK L+ K+R+ + D I K A+
Sbjct: 14 GIDEAGRGPVIGPMVISIVCC----KEEYLREIGVKDSKMLSRKRREYLFDKITKNCAY- 68
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
++V +SP + M SLN++ + + L+ K A G+ VY+D E
Sbjct: 69 SYVV--VSPETLNKDMASE---SLNKIEENYILELLSK--AEGI----VYIDCFDVIEER 117
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+K + S VV KADS YP V AASI +KV RD +
Sbjct: 118 AEKY------------IREKSGKEVV---CKHKADSIYPAVSAASIVSKVIRDREIDKIA 162
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP DP T FL + + + R W T KI
Sbjct: 163 EKYGF------FGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWETYKKI 206
>gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 219
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 107/230 (46%), Gaps = 37/230 (16%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV C EE L+ +G DSK L+ K+R+ + D I K A+
Sbjct: 15 GIDEAGRGPVIGPMVISIVCC----KEEYLREIGVKDSKMLSRKRREYLFDKITKNCAY- 69
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
++V +SP + M SLN++ + + L+ K A G+ VY+D E
Sbjct: 70 SYVV--VSPETLNKDMASE---SLNKIEENYILELLSK--AEGI----VYIDCFDVIEER 118
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+K + S VV KADS YP V AASI +KV RD +
Sbjct: 119 AEKY------------IREKSGKEVV---CKHKADSIYPAVSAASIVSKVIRDREIDKIA 163
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP DP T FL + + + R W T KI
Sbjct: 164 EKYGF------FGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWETYKKI 207
>gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088]
gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088]
Length = 200
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 116/238 (48%), Gaps = 44/238 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRGPVLGP++ ++E LK L DSK L+ ++R + I K +
Sbjct: 3 ILGIDEAGRGPVLGPLIVCGVLV---DDENKLKKLNVRDSKLLSPRRRKILAKEIKKVSK 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
++V+I + + LR SLNE+ A +I+ N ++V VD++ P
Sbjct: 60 C--FIVKIQAYEI---DKLRIAGISLNEIERIAMSKIIK-----NANPKKVIVDSIDIKP 109
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ KKKL + E+I+ KAD YPVV AASI AKV RDS ++
Sbjct: 110 KRLKKKLQKENIEVIVE-----------------HKADEKYPVVSAASIVAKVERDSEIE 152
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG---FPQLVRFSWSTASKILK 275
+ N GSGYP DP T KFL + F P VR +W+T K+ K
Sbjct: 153 KLKKR-----YNCDLGSGYPNDPKTIKFLKK-----FKRSELPDFVRKTWNTVEKLCK 200
>gi|126647908|ref|XP_001388063.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117151|gb|EAZ51251.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 144
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 81/148 (54%), Gaps = 18/148 (12%)
Query: 186 YPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQ--------EGIQIENNAWGS 237
+P + + KAD+ +P V ASI AKV RD L +W Q G +I N GS
Sbjct: 4 FPGINITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 238 GYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKK 297
GYPGDP TK FL DPVFGFP +VRFSWSTAS+I+++ V E++ N
Sbjct: 64 GYPGDPKTKDFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELE------LNNN 117
Query: 298 TRSIRNFFKPKADENVES---PVVEERH 322
+ I NF +P+ + + S P+ E+ H
Sbjct: 118 QQKI-NFNRPQQNGKLFSSNFPLNEDMH 144
>gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219]
gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219]
Length = 215
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 110/242 (45%), Gaps = 43/242 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK--- 98
+ GIDEAG+GPV+GPM ++ LKNLG ADSK L+ K+R+++ I K
Sbjct: 3 IAGIDEAGKGPVIGPMCVAGVIM-DESKINALKNLGVADSKKLSPKRRENLARQIRKYAD 61
Query: 99 -------ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE 151
E + + I+S N I M+R L + D A V AA VN
Sbjct: 62 GIFIQEIEACQIDELRNIMSMNDI---MIRGFSSVLENLKPDLAY-----VDAADVNAER 113
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+ E KK E PE+I AD YP+V AASI A
Sbjct: 114 FGKKLLAAFE--KKHEREKKPEIISEHG-----------------ADDIYPIVSAASIIA 154
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV RD + + I N +GSGYP DP TKKFL E +D P VR SW TA+
Sbjct: 155 KVRRDELI--GNIKTAI---NEDFGSGYPSDPKTKKFLQEWMDKNGNLPDFVRHSWKTAA 209
Query: 272 KI 273
K+
Sbjct: 210 KL 211
>gi|67613277|ref|XP_667290.1| ribonuclease HI large subunit [Cryptosporidium hominis TU502]
gi|54658405|gb|EAL37055.1| similar to ribonuclease HI large subunit (RNase HI large subunit)
[Cryptosporidium hominis]
Length = 144
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Query: 186 YPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQ--------EGIQIENNAWGS 237
+P + + KAD+ +P V ASI AKV RD L +W Q G +I N GS
Sbjct: 4 FPGIDITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 238 GYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEID 287
GYPGDP TK+FL DPVFGFP +VRFSWSTAS+I+++ V E++
Sbjct: 64 GYPGDPKTKEFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELE 113
>gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2]
gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2]
Length = 219
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 34/232 (14%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGPV+GP+V +D +L +++G DSK LT ++R+ I D I N
Sbjct: 5 GVDEAGRGPVIGPLVIVAVVISEDMLSDL-RSIGVRDSKQLTPEQRERIFDEIV--NVLD 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR--EVYVDTVGPPE 161
+ V ++SP I N R +L EV A + +NV+ +YVD+ E
Sbjct: 62 DYSVVVVSPQEIDN---RSSSLNLLEVEKFA-------LALNSLNVKPSRIYVDSADVDE 111
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
K+ + + + +K + V+ KAD+ Y VV AASI AKV RD ++
Sbjct: 112 ---KRFASL-------IRAKLNYNAEVIAE---HKADAKYEVVAAASILAKVIRDREIEK 158
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP DP T+++L E FP +VR SW T +I
Sbjct: 159 LKERYG------DFGSGYPSDPRTRRWLEEYYKEYGEFPPIVRRSWDTVKRI 204
>gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728]
gi|11387092|sp|P57673.1|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum]
Length = 212
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 110/235 (46%), Gaps = 45/235 (19%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV C + LK + DSKALT K+R ++ + I
Sbjct: 9 GIDEAGRGPVIGPMVISLVCC----DLSFLKEIRVKDSKALTRKRRSELFEKIM---GRC 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
I+ P + N M+ + SLN++ D + L+R Y D + + Y
Sbjct: 62 SVRYRILHPKDL-NRMMAAE--SLNKIEEDEIVDLLR------------YADDLVYIDCY 106
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+ E E+I + + KAD+ +P V AASI +KV RD+ +
Sbjct: 107 -DVIEERAQEIIQMRSGRQ--------VVCKHKADAIFPAVSAASIVSKVIRDAEIDRLH 157
Query: 224 FQEGIQIENNAWGSGYPGDPVT----KKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ G +GSGYP DP T KK+L EN DP ++VR WST ++L
Sbjct: 158 DRFG------DFGSGYPSDPRTIDFLKKYLKENQDP----SEIVRIHWSTVQRLL 202
>gi|347524319|ref|YP_004781889.1| ribonuclease HII [Pyrolobus fumarii 1A]
gi|343461201|gb|AEM39637.1| ribonuclease HII [Pyrolobus fumarii 1A]
Length = 234
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 45/245 (18%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
K V+G+DEAGRGP++GPMV G A C +D ++ G DSK L+ +R+ +L
Sbjct: 2 KCSAIVMGVDEAGRGPIIGPMVIAGVAMCTEDVGN--IRLAGVDDSKLLSRAERERLLSL 59
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI-RKVIAAGVNVREVYV 154
I + ++G + + P +I + +LN + + L+ R + G ++++VYV
Sbjct: 60 IERSAVYVGRVY--VHPRLI-------DEVNLNVIERNTIAFLVGRAMDILGESLKKVYV 110
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIAS-KADSTYPVVGAASICAKV 213
D VG P II +A +G IA KAD+ Y +VGAASI AKV
Sbjct: 111 DAVGDPRQ------------IIAAIRRAG----FMGEVIAEPKADARYTIVGAASIIAKV 154
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI-----DPVFGFPQLVRFSWS 268
RD+ ++ + G++ GSGYP DP T ++ E +P P VR SW
Sbjct: 155 YRDAVIEELRREYGVR------GSGYPTDPETLAWIREAYEENPEEP----PWFVRRSWG 204
Query: 269 TASKI 273
T +I
Sbjct: 205 TLKRI 209
>gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
Length = 218
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 119/237 (50%), Gaps = 30/237 (12%)
Query: 42 VLGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V GIDEAG+GPV+G M + G N LKNLG DSK ++ +KR+++ I K
Sbjct: 3 VAGIDEAGKGPVIGSMCIAGVVVDEAKINS--LKNLGVTDSKKISPRKREELAHKIKKYV 60
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT--VG 158
+ + I+P+ I R S+N++ +G R + +N VYVD+ V
Sbjct: 61 D--NYFIFEITPSQIDE---LRNVMSMNDI---MVLGFSR--VVENLNPELVYVDSADVK 110
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIA-SKADSTYPVVGAASICAKVSRDS 217
P E F E I + SK++ T I+ +AD Y VV AASI AKV RD
Sbjct: 111 P---------ERFAEKIRSEYSKSNKTASENIKIISEHEADVVYSVVSAASIIAKVRRDE 161
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + + G+ +GSGYP DP TK+FL + + P +VR SW TA K+L
Sbjct: 162 LVNNLKEEFGVD-----FGSGYPSDPKTKQFLLDWVKRYGSLPDIVRHSWKTAQKLL 213
>gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5]
gi|189043673|sp|A1RYM0.1|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5]
Length = 213
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 27/234 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP+LGPMV CP++ LL+N+G DSKAL+ ++R +L S +
Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKV-PLLRNMGVRDSKALSPRRR--LLLSRAIPSV 60
Query: 102 WLGWMVEIISPNVICNSMLRRQKY-SLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP- 159
V ++ P I + +R + Y +LN + LI +V++ G + VY+D+ P
Sbjct: 61 GCSVKVRVVEPQEI-DCAVRGECYENLNHLEAAVFAQLINEVLSEG-ELEVVYMDSPDPV 118
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P +++++ + + VA AD Y +VGAASI AK +RD +
Sbjct: 119 PSRFEERVRALLKGQVRIVAENG--------------ADEKYTIVGAASIVAKETRDEII 164
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP DP T +F E + P + R W+T ++
Sbjct: 165 NALKKTYG------DFGSGYPSDPRTLRFAEEWVRKHGEPPPIARKEWATWKRL 212
>gi|375082469|ref|ZP_09729526.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
gi|374742808|gb|EHR79189.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
Length = 224
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 36/233 (15%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GP+V + +EL + LG DSK LT K+R+++ + I
Sbjct: 5 GIDEAGRGPVIGPLVIAAVVVDESRMQEL-EALGVKDSKKLTPKRREELFEEI------- 56
Query: 104 GWMVEIISPNVICN---SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
V+I+ +VI + + ++NE+ + + + + V +Y+D
Sbjct: 57 ---VQIVDDHVIIQLSPEEIDGRDGTMNELEIE---NFAKALNSLKVKPDVLYIDAADVK 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E K+ +I E + S P + A KADS Y V AASI AKV+RD A++
Sbjct: 111 E---KRFGDIIGERL--------SFSPKIIAE--HKADSKYIPVAAASILAKVTRDRAIE 157
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
G GSGYP DP+T++FL E FP +VR SW T KI
Sbjct: 158 KLKELYG------EIGSGYPSDPITRRFLEEYYKAHGEFPPIVRKSWKTLRKI 204
>gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
gi|7227913|sp|O27102.1|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 206
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 44/238 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRGPV+GP+V P + +L+ +G DSK LT ++R + I +
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIP-ERKFSILRKMGVKDSKKLTPERRRFLARKIRR--I 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ V+I + ++ +R + ++LNE+ A I+++I R V +D+V P
Sbjct: 60 ARVFTVKISASDI---DRMRERGFNLNEIEKIA----IKRIIPEAQPDR-VIIDSVDVKP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E ++++ F E+ +T AD+ Y YP V AASI AKV RD +
Sbjct: 112 ERLEEEIRSHFGEIEVTAEHGADTRY--------------YP-VAAASIIAKVERDLEI- 155
Query: 221 SWTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGF---PQLVRFSWSTASK 272
E IQ +N GSGYP DP T++FL F + P VR SW+T K
Sbjct: 156 -----ESIQKKNRKLGDIGSGYPSDPRTREFLES-----FTYDELPDFVRRSWATVQK 203
>gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A]
gi|34395791|sp|Q8TPF4.1|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A]
Length = 223
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 118/241 (48%), Gaps = 33/241 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G +++ +LK LG ADSK LT KKR+ + I K
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKI-EESRAHILKVLGVADSKKLTPKKREQLASQIKKHAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
G+ + I+P I R+ S+NE+ VI + ++ D V
Sbjct: 62 --GFFILEITPAQIDE---LRKIMSMNEIM----------VICFAKVLEQLKPDIVYADA 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIA-SKADSTYPVVGAASICAKVSRDSAL- 219
+ K +E F E + +K + + I+ +AD+ YPVV AASI AKV RD +
Sbjct: 107 ADVK--AERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDELIE 164
Query: 220 ---KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWSTASKILK 275
K W+ +GSGYP DP TK FL + G FP++VR SW T I +
Sbjct: 165 EIKKEWSVD---------FGSGYPSDPKTKAFLLKWGKEHDGKFPEIVRQSWQTVENIRE 215
Query: 276 E 276
E
Sbjct: 216 E 216
>gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638]
gi|397652571|ref|YP_006493152.1| ribonuclease HII [Pyrococcus furiosus COM1]
gi|24638181|sp|Q8U036.1|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638]
gi|393190162|gb|AFN04860.1| ribonuclease HII [Pyrococcus furiosus COM1]
Length = 224
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGP +GP+V T + N E+ L+N+G DSK LT +R ++ I +
Sbjct: 5 GIDEAGRGPAIGPLVVATVVVDEKNIEK-LRNIGVKDSKQLTPHERKNLFSQIT--SIAD 61
Query: 104 GWMVEIISPNVICN-----SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+ + I+SP I N + L +K++L S LI AA V+ + +
Sbjct: 62 DYKIVIVSPEEIDNRSGTMNELEVEKFALALNSLQIKPALIY-ADAADVDANR-FASLIE 119
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+YK K I KA D+ YPVV AASI AKV RD
Sbjct: 120 RRLNYKAK---------IIAEHKA---------------DAKYPVVSAASILAKVVRDEE 155
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
++ Q G +GSGYP DP TKK+L E FP +VR +W T KI
Sbjct: 156 IEKLKKQYG------DFGSGYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETVRKI 204
>gi|337283739|ref|YP_004623213.1| ribonuclease HII [Pyrococcus yayanosii CH1]
gi|334899673|gb|AEH23941.1| ribonuclease HII [Pyrococcus yayanosii CH1]
Length = 221
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 32/236 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGPVLGP+V + E L+ +G DSKALT KKR+ + + I
Sbjct: 3 VAGIDEAGRGPVLGPLVIVAVVVDEKKMTE-LEGIGVRDSKALTPKKREKLFERILS--- 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
MV+ S ++ + + ++NE+ + + + + V VYVD+
Sbjct: 59 ----MVDDYSIVLVEPPEIDARAGTMNELEVEK---FAQALNSLKVKPDVVYVDSADVRS 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + L E + +K S + KAD+ YPVV AASI AKV RD +
Sbjct: 112 ERFGLALRE-----KLAFDAKVVSEH---------KADAKYPVVSAASILAKVIRDREI- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
E +++E +GSGYP DP T+ FL + FP +VR +W T +I K+
Sbjct: 157 -----EKLKLEYGDFGSGYPSDPRTRAFLEDYYRRHGDFPPMVRRTWKTVKEIEKQ 207
>gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
gi|259494074|sp|C6A1I4.1|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
Length = 224
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 116/231 (50%), Gaps = 32/231 (13%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GP+V A ++ E + LG DSK L+ KKR+++ + I +
Sbjct: 5 GIDEAGRGPVVGPLVIA-AVVIDESKIEKFEALGVKDSKKLSPKKREELFEKIIE--LVD 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPES 162
+ + +SP I +++ ++N D + KV+ + + VY+D
Sbjct: 62 DYFILELSPEDID-----KREGTMN----DFEVENFAKVLNSLKIKPDLVYIDA------ 106
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+++ E V + S YP + A KADS Y V AASI AKV+RD A++
Sbjct: 107 -----ADVNEERFGIVVREKLSFYPKIIA--EHKADSKYIPVAAASILAKVTRDKAIERL 159
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+I N GSGYP DP+T+KFL E FP +VR SW T KI
Sbjct: 160 K-----EIYGNI-GSGYPSDPITRKFLEEYYKEHGSFPPVVRRSWKTLKKI 204
>gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro]
gi|97182902|sp|Q468N6.1|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro]
Length = 224
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 117/247 (47%), Gaps = 45/247 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G +++ +LK LG ADSK LT KKR+ + I K
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKI-EESRAHILKVLGVADSKKLTPKKREQLAAQIKKHAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-----------AAGVNVR 150
G+ V +SP+ I R+ ++NE+ + KV+ AA VN
Sbjct: 62 --GFFVLEVSPSQIDE---LRKIMTMNEI----MVVCFSKVLEQLKPDLLYADAADVNAE 112
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
+ + Y K + E+ I +AD +TYPVV AASI
Sbjct: 113 RFATNI---RKQYSKTNPDHAKEIEIISMHQAD---------------ATYPVVSAASII 154
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWST 269
AKV RD ++ + G+ +GSGYP DP TK+FL G FP++VR SW T
Sbjct: 155 AKVRRDELIEELKKEWGLD-----FGSGYPSDPKTKEFLLNWGKEHSGEFPEIVRQSWQT 209
Query: 270 ASKILKE 276
I +E
Sbjct: 210 VENIREE 216
>gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86]
gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86]
Length = 230
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 116/245 (47%), Gaps = 40/245 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGPVLGPMV Y K + EE LK LG DSK LT+ KR A
Sbjct: 3 IIGIDEAGRGPVLGPMVI-CGYAIKKDKEEDLKKLGVKDSKELTKNKR-----------A 50
Query: 102 WLGWMVE--------IISPNVICNSMLRRQKYSLNEVSHDA----AIGLIRKVIAAGVNV 149
+L ++E I+ I N M +LNE+ +A A LI+K+ V
Sbjct: 51 YLKKLLENFGCSEKLILEAEKINNLM---DTINLNEIEINAFSEVAKNLIKKLNIKDEEV 107
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
E+Y+D + KK F E I V + + ++ KADS YPVV AASI
Sbjct: 108 -EIYLDACS---TNTKKFESDFKEKIRDVIEERNLKIKIIA---EHKADSKYPVVSAASI 160
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
AK RD ++++ G GSGYP D T KFL + P++ R W T
Sbjct: 161 IAKAERDEIIENYKKIYG------DIGSGYPSDSKTIKFLEDYFKKHKKLPEITRTKWKT 214
Query: 270 ASKIL 274
+IL
Sbjct: 215 CQRIL 219
>gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP]
gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP]
Length = 227
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 111/230 (48%), Gaps = 30/230 (13%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GP+V A + N L+ LG DSK LT ++R+ + + I +
Sbjct: 8 GIDEAGRGPVIGPLVIA-AVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEIIE--LLD 64
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
+ + +SP I ++ ++NE + +R + + V +Y+D E
Sbjct: 65 DYAIIELSPEQIDE-----REGTMNEFEIE---NFVRVLNSLKVKPDVLYIDAADIKE-- 114
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
K+ EI K + P + A KAD+ Y V AASI AKV+RD A++
Sbjct: 115 -KRFGEII--------GKGLNFSPKIIAE--HKADAKYLPVSAASILAKVTRDKAIEKLK 163
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
Q G GSGYP DP T+KFL E FP +VR SW T KI
Sbjct: 164 KQYG------EIGSGYPSDPRTRKFLEEYYKEHGEFPPIVRKSWKTLRKI 207
>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 119/249 (47%), Gaps = 49/249 (19%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGPV+GP+V C E + +L DSK L+ K+R+ + + I K + +
Sbjct: 4 GVDEAGRGPVIGPLVVA-GVC---GEESKIASLRVKDSKKLSPKRRERLAEEIKKVASKI 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP---- 159
+V I P I +++ R+K +LNE+ + L +VI+ +N +VYVD
Sbjct: 60 --VVIKIEPEEI-DAL--REKMTLNEIE----VELFARVISQ-LNGDKVYVDAADVNEDR 109
Query: 160 -PESYKKKLS---EIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
E KKKL EI E KADS YP+V AASI AKV R
Sbjct: 110 FAEEIKKKLGKDVEIISE---------------------HKADSKYPMVSAASIIAKVER 148
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
D + + G +GSGYP D TK+FL + + P R SW +A + +K
Sbjct: 149 DRIINELKKELG------EFGSGYPADERTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
Query: 276 EKAVLVEGD 284
+K GD
Sbjct: 203 KKEQKKLGD 211
>gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1]
gi|226736826|sp|B6YVT5.1|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII
gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1]
Length = 227
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 109/233 (46%), Gaps = 36/233 (15%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPVLGPMV A + N L+ LG DSK LT K+R+ + D I
Sbjct: 5 GIDEAGRGPVLGPMVIA-AVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEI------- 56
Query: 104 GWMVEIISPNVICN---SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
V+++ VI + ++ +LNE + ++ + + V VY+D
Sbjct: 57 ---VQLLDDYVILELWPEEIDSREGTLNEFEVE---NFVKALNSLKVKPDVVYIDAADVK 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E+ F E + +K D ++ KAD + V AASI AKV+RD A++
Sbjct: 111 EAR-------FGE---EIKAKLDFEADIIAE---HKADDKFVPVSAASILAKVARDRAIE 157
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
Q G GSGYP DP T+ FL E FP +VR +W T KI
Sbjct: 158 KLKDQYG------EIGSGYPSDPRTRTFLEEYYRKHGEFPPIVRRTWKTLKKI 204
>gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia]
Length = 281
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 31/247 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI-LDSICKEN 100
+LGI EAGRGP++GP++ + P N+ ++K + +K + + + + S K
Sbjct: 26 ILGIFEAGRGPLIGPIIIAGCFWPITNHNYIVKQCSLSLNKQFYQNQVESSEIISKLKGK 85
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A +EI S + +L +NE+S + + LI+ +++ G + E Y++ +G
Sbjct: 86 ALQFETIEI-SAQKLSTKILAYTPSDVNEISLNYTLQLIKNILSKGYKIIECYINPIG-- 142
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+K+ L+E+ + + + +VG + + AA I + R++ L
Sbjct: 143 --FKENLNEVLKK---GLGLGNNDLKFIVG---------MHQTIIAAQIVSLQERNTRL- 187
Query: 221 SWTFQEGIQIENNAW-----GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+QI+ + + GSGYP D +T++FLS+ PVF +PQ +RF+W T S LK
Sbjct: 188 -------LQIQQDIYPSGQMGSGYPSDALTREFLSKVSIPVFIYPQDIRFAWQTVSASLK 240
Query: 276 EKAVLVE 282
+KA+ +E
Sbjct: 241 QKAINIE 247
>gi|374629635|ref|ZP_09702020.1| RNase HII [Methanoplanus limicola DSM 2279]
gi|373907748|gb|EHQ35852.1| RNase HII [Methanoplanus limicola DSM 2279]
Length = 212
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 35/235 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+G V+GPMV G K ++ E G ADSK L+ K+R+ + + +E
Sbjct: 2 ICGIDEAGKGSVIGPMVIGGISGVKLSDFE---ERGFADSKKLSPKRRESLYGELTRE-- 56
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ ++ I +P++ +R+ S+N++ +I++ ++AG YVD E
Sbjct: 57 FKTSVIVISAPDI----DQKRETMSMNDIVAHGHASVIKQ-LSAGT----AYVDACDVNE 107
Query: 162 S-YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ Y K++++ + TV SK KAD+ YPVV AASI AKV+RD +K
Sbjct: 108 ARYGNKIADLLDNKV-TVYSK-------------HKADNIYPVVAAASIVAKVTRDRLIK 153
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ G GSGYP DPVT +L I P + R SW T S I++
Sbjct: 154 ELSEVYG------TIGSGYPSDPVTISYLEGYIRENKEAPDIARKSWKTVSNIIE 202
>gi|413916151|gb|AFW56083.1| hypothetical protein ZEAMMB73_828983 [Zea mays]
Length = 277
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 80/123 (65%), Gaps = 7/123 (5%)
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLR-----RQKYSLNEVSHDA 134
DSK L E++R+++ +S+ K N+ + W V++I P + ML+ R K +LNE+SH++
Sbjct: 2 DSKTLKEEQREELFESL-KVNSSIRWEVDVIRPKDLSAKMLKKSHCFRSKVNLNEISHNS 60
Query: 135 AIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV-GAAI 193
A+GL+RKV+ GV + E Y+DTVG + Y+ KL+E F VA K DS Y VV GA+I
Sbjct: 61 AMGLVRKVLDMGVLLAEAYIDTVGDLKKYRIKLTEKFTGFKFVVAKKVDSLYTVVSGASI 120
Query: 194 ASK 196
+K
Sbjct: 121 VAK 123
>gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1]
gi|34395785|sp|Q8PTA3.1|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 220
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 116/237 (48%), Gaps = 25/237 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G ++ +LK LG ADSK LT KKR+ + I K
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKI-DESKAHILKVLGVADSKKLTPKKREQLASQIKKHAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
G+ + +SP+ I R+ S+NE+ V+ + ++ D V
Sbjct: 62 --GYFIFEVSPSQIDE---LRKIMSMNEIM----------VVCFAKVLEQLKPDIVYADA 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYP-VVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ K +E F E ++ +K + + +AD+ YPVV AASI AKV RD ++
Sbjct: 107 ADVK--AERFAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDELIE 164
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWSTASKILKE 276
+ I +GSGYP DP T+ FL + G FP +VR SW T I +E
Sbjct: 165 ELKREWCID-----FGSGYPSDPKTRGFLLKWGKEHGGDFPDIVRQSWQTVENIREE 216
>gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661]
gi|2495822|sp|Q57599.1|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661]
Length = 230
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGPVLGPMV A+ + EE LK LG DSK LT+ KR + + EN
Sbjct: 3 IIGIDEAGRGPVLGPMVV-CAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLL--EN- 58
Query: 102 WLGW----MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR----EVY 153
LG+ ++E N + NS+ +LN++ +A + + +I +N+R E+Y
Sbjct: 59 -LGYVEKRILEAEEINQLMNSI------NLNDIEINAFSKVAKNLIEK-LNIRDDEIEIY 110
Query: 154 VDTVGP-----PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+D +S+K K+ +I E + + A+ KAD+ YPVV AAS
Sbjct: 111 IDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAE-----------HKADAKYPVVSAAS 159
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
I AK RD + + G GSGYP DP T KFL + P + R W
Sbjct: 160 IIAKAERDEIIDYYKKIYG------DIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWK 213
Query: 269 TASKIL 274
T +IL
Sbjct: 214 TCKRIL 219
>gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 120/249 (48%), Gaps = 49/249 (19%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGPV+GP+V C E + +L DSK L+ K R+ + + I K + +
Sbjct: 4 GVDEAGRGPVIGPLVVA-GVC---GEESKIASLRVKDSKKLSPKSRERLAEEIKKVASKI 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP---- 159
+V I P I +++ R++ +LNE+ + L +VI+ +N +VYVD
Sbjct: 60 --VVIKIEPEEI-DAL--RERMTLNEIE----VELFARVISQ-LNGDKVYVDAADVNEDR 109
Query: 160 -PESYKKKLS---EIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
E KKKL EI E KADS YP+V AASI AKV R
Sbjct: 110 FAEEIKKKLGKDVEIISE---------------------HKADSKYPMVSAASIIAKVER 148
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
D + E ++ E +GSGYP D TK+FL + + P R SW +A + +K
Sbjct: 149 DRII------EELKEELGEFGSGYPSDDRTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
Query: 276 EKAVLVEGD 284
+K GD
Sbjct: 203 KKEQKKLGD 211
>gi|378755758|gb|EHY65784.1| hypothetical protein NERG_01391 [Nematocida sp. 1 ERTm2]
Length = 352
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 134/296 (45%), Gaps = 79/296 (26%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGP+ GP+VY AY D + ++ DSK + ++KR + K+ +
Sbjct: 49 VGIDEAGRGPLAGPLVYSMAYWVSDPDTKVYN-----DSKKVGKQKRVMQHKDLYKDKS- 102
Query: 103 LGWMVEIISP-----NVICN---------------SMLRRQK----------------YS 126
+G+++ +SP N++C +RQK YS
Sbjct: 103 VGFIIRCLSPLFISINMLCTIRDKENKSLKKIPAKKTAKRQKLEPGIAEEAGKNKEPSYS 162
Query: 127 -----------------------LNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
LN++S + L+ I +GV ++EV+VDTVG ++
Sbjct: 163 TILHMMGKTDLGPPIFVSRIRQNLNDLSIGCILELLNTSIKSGVQMQEVFVDTVGNKQTL 222
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+ K+ ++ + SK + + KADS Y VVGAASI AKV+RD +++
Sbjct: 223 RAKVVDLLKD------SKG-----IKNVTVEEKADSKYQVVGAASILAKVTRDMFFENFD 271
Query: 224 FQEGIQIENNAWG---SGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ I ++ SGYP D TK ++ ++ GFP + R +W ++L+E
Sbjct: 272 LSKMIYKGSSLPKIAVSGYPSDVNTKNWMKKSFLSGLGFPSIFRIAWKPILEVLQE 327
>gi|296108883|ref|YP_003615832.1| ribonuclease HII [methanocaldococcus infernus ME]
gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME]
Length = 223
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAGRGPV+GP+V C + EE+ DSK L+++KR+ + + K+ +
Sbjct: 3 IGVDEAGRGPVIGPLVV----CAYASEEEI----EAEDSKKLSKEKREKLRKELEKKGIF 54
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR--EVYVDTVGP- 159
EI+ + + L + K +LNE+ + I+ +I N++ E+YVD+ P
Sbjct: 55 -----EIVKVSAEELNRLMKSK-NLNEIEVELFAKAIKNLIEKH-NLKDVEIYVDSCSPN 107
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
E +K+KL L I + KAD Y VV AASI AK RD +
Sbjct: 108 REKFKRKLLSKLRGLSIK------------DLIVEHKADEKYKVVSAASIIAKTERDREI 155
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ G +GSGYP DP TK+FL + FP +VR W T +I K
Sbjct: 156 EELKKIYG------DFGSGYPSDPKTKRFLLYYYNEYREFPSIVREHWETCKRIKK 205
>gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
Length = 219
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 115/234 (49%), Gaps = 31/234 (13%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LG+DEAGRGPVLGPMV P + E++++ +G DSK +T K+R + + + +
Sbjct: 4 LGLDEAGRGPVLGPMVVAGIVIP-EKKEKIIERMGVKDSKRITPKRRAVLYRKLTRMFDY 62
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
VEI + ++ +LR + +LN++ A + +I K+ A + +D++ E
Sbjct: 63 --ETVEISAKDI---DLLRAKGVNLNQIEKLAMMRIIAKLKAD-----TIIIDSLDIKEG 112
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
++ + F + SK + + KAD Y VVGAASI AK RD +
Sbjct: 113 RLEEEMQNF----VGEGSKVIAEH---------KADDKYIVVGAASIIAKTKRDEIINQI 159
Query: 223 TFQEGIQIENN--AWGSGYPGDPVTKKFLSE-NIDPVFGFPQLVRFSWSTASKI 273
+E I+ N GSGYP DP TK FL D P VR SW T +I
Sbjct: 160 N-KEYIRSTGNKDGIGSGYPSDPKTKNFLKNYKYDE---MPDFVRRSWGTVQRI 209
>gi|432328903|ref|YP_007247047.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
gi|432135612|gb|AGB04881.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
Length = 213
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 111/234 (47%), Gaps = 33/234 (14%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGPV+GPMV +D L LG DSK L+ K+R+ + I K + +
Sbjct: 4 GVDEAGRGPVIGPMVVAGVCASRD----ALIGLGVKDSKKLSPKRREKLAKEIRKIASQI 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
+V ++ P I LRR+ +LN++ + L ++I+ +N VYVD E
Sbjct: 60 --IVLVVEPEEI--DSLRRE-MTLNDIE----VELFARIISK-MNDEVVYVDAADVDE-- 107
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
E F I K V KAD YP V AASI AKV RD ++
Sbjct: 108 -----ERFAREIALKVRKD------VNIISKHKADLLYPEVSAASIIAKVERDRIIEELK 156
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ G +GSGYP D TK++L E + P VR SW +A + L +K
Sbjct: 157 KKMG------DFGSGYPADRRTKEYLEEYFNEHGDLPPNVRRSWKSARRFLNKK 204
>gi|395646404|ref|ZP_10434264.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
gi|395443144|gb|EJG07901.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
Length = 212
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 114/245 (46%), Gaps = 39/245 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL--GCADSKALTEKKRDDILDSICKE 99
+ G+DEAG+G VLGPMV G C E + +L G DSKALT K+R + D I
Sbjct: 2 ICGVDEAGKGAVLGPMVVGGVGC------EEMGDLPPGVKDSKALTPKRRATLYDEITGS 55
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
W ++E+ + + + + R++ S+N + A G+I A + + YVD
Sbjct: 56 FPWT--VIEVSAAEI--DHL--REEMSMNTIVARAHAGVI-----AALAPQTAYVDA--- 101
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
++ E + S PV+ AD+ +PVV AASI AKVSRD +
Sbjct: 102 --------CDVNEERYAATVTALGSPCPVIA---RHHADALFPVVSAASIVAKVSRDRRI 150
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV 279
QE A GSGYP D VT +L E I P R SW T +++K++
Sbjct: 151 IE--LQEAF----GAIGSGYPSDTVTIAYLREQIRADGVPPVFARRSWKTVEEMMKDRRQ 204
Query: 280 LVEGD 284
GD
Sbjct: 205 RSLGD 209
>gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
Length = 207
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 115/238 (48%), Gaps = 44/238 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRGPV+GP+V P + +L+ +G DSK LT ++R + I + +
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMVP-ERKFSILRKMGIRDSKKLTPERRKFLARKIRRISR 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ V+I + ++ +R + ++LNE+ A I+++IA V +D+V P
Sbjct: 62 V--FTVKISASDI---DRMREKGFNLNEIEKIA----IKRIIAEA-QPDSVIIDSVDVKP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E +++ F ++ + AD+ Y YP V AASI AKV RD +
Sbjct: 112 ERLTEEIRSHFGDIEVKAEHGADAKY--------------YP-VAAASIIAKVERDLEI- 155
Query: 221 SWTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGF---PQLVRFSWSTASK 272
E IQ N GSGYP DP T+ FL F + P VR SW+T K
Sbjct: 156 -----ERIQKRNRKLGDIGSGYPSDPRTRAFLES-----FSYDELPDFVRKSWATVQK 203
>gi|408381629|ref|ZP_11179177.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
gi|407815560|gb|EKF86130.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
Length = 206
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 34/236 (14%)
Query: 42 VLGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+LGIDEAGRG VLGP+V G A +++ + L+ LG DSK ++ K+R + I E
Sbjct: 3 ILGIDEAGRGSVLGPLVVCGVAV--EEDRVKYLERLGLKDSKKISPKRRLSLSRKI--ER 58
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
V I + ++ LR + +LNE+ A I ++I N ++D++
Sbjct: 59 IAECHTVNITALDI---DTLRSRDVNLNEIEKIA----INQIIGNS-NPSTCFIDSM--- 107
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
++ PE +AS+ +S + + KAD YP+V AASI AKV RD A+
Sbjct: 108 --------DVKPE---RLASELESMHSQLNVVSEHKADDHYPIVSAASIVAKVERDRAI- 155
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSE-NIDPVFGFPQLVRFSWSTASKILK 275
+ I+ GSGYP DP T +FL + + P+ +R SW+T +ILK
Sbjct: 156 -----QNIRKTYPDVGSGYPSDPKTIEFLKTLSQETPNELPEFIRRSWATVERILK 206
>gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
Length = 219
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 114/247 (46%), Gaps = 47/247 (19%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILD---SI 96
P + G+DEAG+G VLGPMV + + LG DSK LT KR+D+ D SI
Sbjct: 4 PLICGVDEAGKGAVLGPMVVAGV---ASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSI 60
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEV---SHDAAIGLIRKVIAAGVNVREVY 153
C V ++S I L R+ ++N + H A I + +A Y
Sbjct: 61 CTTT------VTVLSAADI---DLARESATMNMIVARGHAAVISTLTPTLA--------Y 103
Query: 154 VDTVGP-PESYKKKLSEIF-PELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
VD + Y++ ++ + P V ++ +ADSTYP+V AASI A
Sbjct: 104 VDACDVNADRYRETVTALLEPAASCQVIAE-------------HRADSTYPIVAAASIIA 150
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV+RD + + + G QI GSGYP D T +LS+ I P R SW T
Sbjct: 151 KVTRDRLVDALADECG-QI-----GSGYPSDRYTIAYLSDYIRRHHAPPACARKSWKTTI 204
Query: 272 KILKEKA 278
+L+E+A
Sbjct: 205 HLLEERA 211
>gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
gi|7227922|sp|O74035.1|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis]
gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
Length = 228
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 109/233 (46%), Gaps = 32/233 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV A +N+ L+ L DSK LT K+R+ + + I
Sbjct: 3 IAGIDEAGRGPVIGPMVIA-AVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEIL--GV 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+++ + P+VI + ++ +LNE + + + + V +Y D
Sbjct: 60 LDDYVILELPPDVIGS-----REGTLNEFEVE---NFAKALNSLKVKPDVIYADAADVDE 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + ++L E VA KAD +PVV AASI AKV+RD A+
Sbjct: 112 ERFARELGERLNFEAEVVAK--------------HKADDIFPVVSAASILAKVTRDRAV- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E GSGYP DP T+ FL FP +VR W T KI
Sbjct: 157 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKI 204
>gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
gi|189043622|sp|A6UUM1.1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
Length = 277
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 41/255 (16%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN---LGCADSKALTEKKRDDILD 94
+ ++G+DEAGRGPVLGPMV + LKN L DSK ++ +R+++ +
Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQD----LKNFEKLDIKDSKKHSKNRREELFE 73
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV------------ 142
I ++E + + + N++ +LN++ A LI V
Sbjct: 74 MIINNYDVRYEILEAKTIDKLMNTI------NLNKIELMAFTKLINSVLKEEYPNYKENS 127
Query: 143 -IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
I E+Y+D E K ++I +LI+ ++ ++ KAD Y
Sbjct: 128 KIQTATPQIEIYIDACSSNE--KAFANQIKSKLIVN----DENNIKIIAE---HKADENY 178
Query: 202 PVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ 261
+V AASI AKV RD ++ + G GSGYP D +T+K+L+ ++ P+
Sbjct: 179 KIVSAASIIAKVIRDRKIEEYKKIYG------EIGSGYPSDKITQKYLANYVEKNRELPE 232
Query: 262 LVRFSWSTASKILKE 276
+ R SW+T+ K+LK+
Sbjct: 233 IARKSWNTSKKLLKK 247
>gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C
Length = 213
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 111/236 (47%), Gaps = 32/236 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV A +N+ L+ L DSK LT K+R+ + + I
Sbjct: 3 IAGIDEAGRGPVIGPMVIA-AVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEIL--GV 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+++ + P+VI + ++ +LNE + + + + V +Y D
Sbjct: 60 LDDYVILELPPDVIGS-----REGTLNEFEVE---NFAKALNSLKVKPDVIYADAADVDE 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + ++L E VA KAD +PVV AASI AKV+RD A+
Sbjct: 112 ERFARELGERLNFEAEVVAK--------------HKADDIFPVVSAASILAKVTRDRAV- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
E ++ E GSGYP DP T+ FL FP +VR W T KI ++
Sbjct: 157 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKITQD 207
>gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C
Length = 221
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 109/233 (46%), Gaps = 32/233 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV A +N+ L+ L DSK LT K+R+ + + I
Sbjct: 3 IAGIDEAGRGPVIGPMVIA-AVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEIL--GV 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+++ + P+VI + ++ +LNE + + + + V +Y D
Sbjct: 60 LDDYVILELPPDVIGS-----REGTLNEFEVE---NFAKALNSLKVKPDVIYADAADVDE 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + ++L E VA KAD +PVV AASI AKV+RD A+
Sbjct: 112 ERFARELGERLNFEAEVVAK--------------HKADDIFPVVSAASILAKVTRDRAV- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E GSGYP DP T+ FL FP +VR W T KI
Sbjct: 157 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKI 204
>gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10]
Length = 830
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G DEAGRGPVLGP+V P + + L+ +LG DSKAL+ KKR+++ I +E
Sbjct: 4 IVGADEAGRGPVLGPLVVAAVAIPATDLQRLI-DLGVDDSKALSPKKREELNQIIHQEPT 62
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W ++E SP I +M +K +LN++ D I + + E+ +D E
Sbjct: 63 WQVSIIEC-SPERIDVTM---EKKTLNDLEVDLFGEAIDSLEVE--RIEELILDACDTNE 116
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ + VASK S V AD+ PVVGAASI AKV RD ++S
Sbjct: 117 ARFGR----------NVASKISSGKIVETVISKHGADAENPVVGAASIVAKVHRDKVIQS 166
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTK----KFLSENIDPVFGFPQL-VRFSWSTASKILKE 276
G + GSGYP DP T+ + LS+ P L +R+ W T K E
Sbjct: 167 IAKDRGFNV-----GSGYPSDPNTRSALPRLLSQE------QPDLDLRWGWKTVEKHWSE 215
>gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 109/233 (46%), Gaps = 32/233 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV A +N+ L+ L DSK LT K+R+ + + I
Sbjct: 3 IAGIDEAGRGPVIGPMVIA-AVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEIL--GV 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+++ + P+VI + ++ +LNE + + + + V +Y D
Sbjct: 60 LDDYVILELPPDVIGS-----REGTLNEFEVE---NFAKALNSLKVKPDVIYADAADVDE 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + ++L E VA KAD +PVV AASI AKV+RD A+
Sbjct: 112 ERFARELGERLNFEAEVVAK--------------HKADDIFPVVSAASILAKVTRDRAV- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E GSGYP DP T+ FL FP +VR W T KI
Sbjct: 157 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKI 204
>gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3]
gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3]
Length = 264
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 122/259 (47%), Gaps = 40/259 (15%)
Query: 33 PESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDN--NEELLKNLGCADSKALTEKKRD 90
PE+ P V+G+DEAGRGPV+GPMV DN N + +L DSK L++KKR+
Sbjct: 10 PENQIITPKVVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRE 69
Query: 91 DILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR--KVIAAGVN 148
+ I K + + +K + DA + +I K+ G +
Sbjct: 70 TLYKEIQK--------------------LAKVEKVIITAKEIDAQMNIINLNKIELNGFS 109
Query: 149 --VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASK---------A 197
+ + Y D G E+ K F I +S S + A + +K A
Sbjct: 110 SIINKFYKDIYGLDEN---KRDSGFLTYIDACSSNETSFSNQLKAKLINKNIDLIAEHKA 166
Query: 198 DSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVF 257
D Y +V AASI AKV+RD+ + S + E + GSGYP DP TKKFL + ++
Sbjct: 167 DDNYKIVSAASIIAKVNRDNIIDS--YNEKYEALGYTIGSGYPSDPKTKKFLRQYLEDNK 224
Query: 258 GFPQLVRFSWSTASKILKE 276
P +VRFSW+T K+LKE
Sbjct: 225 ELPDIVRFSWNTTKKLLKE 243
>gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061]
gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
DSM 2375]
gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
gi|189043626|sp|A5ULV6.1|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061]
gi|222434841|gb|EEE42006.1| ribonuclease HII [Methanobrevibacter smithii DSM 2375]
gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
Length = 207
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRG VLGP+V P + + +L+ +G DSK LT +R IL K+
Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVP-EKMDIVLERMGVKDSKRLTPNRR-TILSRKLKK-- 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ + +IS I N +R +LNE+ IG+ + I + +N + VD V
Sbjct: 59 MFEYDLVVISAQDIDN--MRADGINLNEIER---IGMEK--ILSNLNPEKAIVDAVDIKA 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL- 219
E ++ KL+ D+ VV KAD Y V AASI AK RD+ +
Sbjct: 112 ERFQNKLAN-------------DTGVNVVA---EHKADDNYIEVSAASIIAKQERDAHIA 155
Query: 220 ---KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF---PQLVRFSWSTASKI 273
K + GI GSGYP DP+TKKFL+ F + P VR SW+T K+
Sbjct: 156 EINKDYIKMGGI-------GSGYPSDPITKKFLTN-----FTYDEMPDFVRKSWATVEKM 203
>gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 120/246 (48%), Gaps = 42/246 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGPVLGP V A+ + EE LK LG DSK LT+ KR + + EN
Sbjct: 3 IIGIDEAGRGPVLGPXVV-CAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLL--EN- 58
Query: 102 WLGW----MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR----EVY 153
LG+ ++E N + NS+ +LN++ +A + + +I +N+R E+Y
Sbjct: 59 -LGYVEKRILEAEEINQLXNSI------NLNDIEINAFSKVAKNLIEK-LNIRDDEIEIY 110
Query: 154 VDTVGP-----PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+D +S+K K+ +I E + + A+ KAD+ YPVV AAS
Sbjct: 111 IDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAE-----------HKADAKYPVVSAAS 159
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
I AK RD + + G GSGYP DP T KFL + P + R W
Sbjct: 160 IIAKAERDEIIDYYKKIYG------DIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWK 213
Query: 269 TASKIL 274
T +IL
Sbjct: 214 TCKRIL 219
>gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
Length = 230
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 116/237 (48%), Gaps = 24/237 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+GIDEAGRGPVLGPMV A+ + + EE LK LG DSK LT+ KR L + ++
Sbjct: 3 VIGIDEAGRGPVLGPMVV-CAFAIEKDKEEELKKLGVRDSKELTKNKR-AYLKKLLED-- 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDA----AIGLIRKVIAAGVNVREVYVDTV 157
LG++ ++I N ++ +LNE+ +A A LI K+ + E+Y+D
Sbjct: 59 -LGYVEKLILEAEKINQLM--STINLNEIEINAFSKVAENLIEKLGIKDEKI-EIYLDAC 114
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ KK F E + + + + ++ KAD+ Y VV AASI AK RD
Sbjct: 115 S---TNAKKFENDFKEKLDNIIKERNLNVKIIA---EHKADAKYSVVSAASIIAKAERDE 168
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ ++ G GSGYP DP T KFL P + R W T +IL
Sbjct: 169 IIDNYKKIYG------DIGSGYPSDPKTIKFLENYFKKHKKLPDIARTHWKTCKRIL 219
>gi|429964623|gb|ELA46621.1| ribonuclease HII [Vavraia culicis 'floridensis']
Length = 343
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 125/291 (42%), Gaps = 82/291 (28%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNN----------EELLKNL 76
II S+I + K +GIDEAGRGPVLG +VY ++N+ +++ ++
Sbjct: 68 IIHSSIRSTGKR--LTIGIDEAGRGPVLGYLVYAALIIEEENDITNPTVSSALKDVHSDI 125
Query: 77 GCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAI 136
DSK L K+R+ I D I ++++ W + P I M RR +LN++S A +
Sbjct: 126 KMCDSKLLLPKQRETIYDQIRNTHSYV-WYA--LHPEYISTEMDRR---NLNDISISAVV 179
Query: 137 GLIRKVIAA----------------------------GVN-------VREVYVDTVGPPE 161
++R + A G N V V++D +G +
Sbjct: 180 YILRIIFEALSTENGNKRRFWDCQERTNTGIGRSDEIGKNVSLRRDGVENVFIDALGNTD 239
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
Y + L FP + T I KADS Y VG ASI AKV RD LK
Sbjct: 240 KYLQILQRHFPSVPFT---------------IKPKADSIYRCVGGASIIAKVVRDDLLKQ 284
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
++ + GSGYP D T K+L N + ++VRF W+ +
Sbjct: 285 FSAE---------CGSGYPSDWRTVKWLDTNRE-----CEMVRFKWACVKR 321
>gi|389852952|ref|YP_006355186.1| ribonuclease HII [Pyrococcus sp. ST04]
gi|388250258|gb|AFK23111.1| Ribonuclease HII [Pyrococcus sp. ST04]
Length = 222
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 113/242 (46%), Gaps = 50/242 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP +GP+V A ++ LKN+G DSK LT ++R + I +
Sbjct: 3 VGGIDEAGRGPAIGPLVI-VAVVVDESKLSSLKNIGVKDSKQLTPEQRRRMFSEIV--SL 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
++V + P+ I N + ++NE+ + A +N +V
Sbjct: 60 LEDYVVIKVPPSEIDN-----RSGTMNELEVEK--------FAEALNSLKVK-------- 98
Query: 162 SYKKKLSEIFPELIITVAS--KADSTYPVVGAAIA--------SKADSTYPVVGAASICA 211
PE+I A+ KA+ +GA ++ KAD+ Y VV AASI A
Sbjct: 99 ----------PEVIYADAADVKAERFAREIGARLSYNASIIAEHKADAKYEVVSAASILA 148
Query: 212 KVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
KV RD + E ++ E +GSGYP DP TKK+L E FP +VR SW T
Sbjct: 149 KVIRDEEI------EKLKEEYGDFGSGYPSDPRTKKWLEEWFKKHKSFPPIVRRSWETVK 202
Query: 272 KI 273
KI
Sbjct: 203 KI 204
>gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
Length = 232
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 27/242 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP++G M D + L+N+G DSK L+ +KR I EN+
Sbjct: 5 ICGIDEAGRGPLIGDMFIAMIVINTDA-LKYLENIGVRDSKRLSREKRIKFF-PIIIENS 62
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L ++ ++P S L + ++N++ + LI+K I+ + E+Y+D P
Sbjct: 63 EL-VLISRLTP-----SQLDEE--NINKLELNTVCRLIKKSISIVSTISEIYIDAFANPN 114
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+L+ + S ++ + I AD+ Y VVGAASI AKV RD+ + +
Sbjct: 115 -----------KLLHYINSNCIASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHIDN 163
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLV 281
G +GSGYP D T ++L P +VR SWST +++L +
Sbjct: 164 LKKVYG------DFGSGYPSDKKTIEWLRNYYAKHNALPPIVRKSWSTITRVLGVPKIHK 217
Query: 282 EG 283
EG
Sbjct: 218 EG 219
>gi|410720630|ref|ZP_11359984.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
gi|410600757|gb|EKQ55282.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
Length = 204
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 34/233 (14%)
Query: 42 VLGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+LGIDEAGRG VLGP+V G A +++ + L+ LG DSK ++ K+R +L K
Sbjct: 3 ILGIDEAGRGSVLGPLVVCGVAV--ENDRVKYLERLGLKDSKKVSPKRRI-VLSRKIKRI 59
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A V I + ++ LR + +LNE+ A I ++I N ++D++
Sbjct: 60 AEC-HTVHITAHDI---DTLRSRDVNLNEIEKIA----INRIIGDA-NASTCFIDSM--- 107
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
++ PE + + S VV KAD YP+V AASI AKV RD A+
Sbjct: 108 --------DVKPERLTSELETMHSQLRVVAE---HKADDRYPIVSAASIIAKVERDRAI- 155
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ I+ GSGYP DP T +FL + + P P VR SW+T +I
Sbjct: 156 -----QDIRKTYENVGSGYPSDPKTIEFL-KTMPPGEELPDFVRSSWATIERI 202
>gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
gi|189043606|sp|A2BL34.1|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
Length = 240
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 112/234 (47%), Gaps = 37/234 (15%)
Query: 43 LGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+GIDEAGRGPV+GPM V G A C N+ + L LG DSK LT R + I + A
Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVC--SNDIDKLVALGVRDSKQLTPVVRAKLYGEILR-VA 66
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+V++ P + +++ +LN++ + + ++ + VYVD VG PE
Sbjct: 67 LHSVIVKL--PPALLDAV------NLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPE 118
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+LS +I AD TYP+V AASI AKV RD+ ++
Sbjct: 119 KLAARLSGRLGVRVIA----------------EPGADKTYPIVSAASIVAKVVRDAEIRM 162
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENI--DPVFGFPQLVRFSWSTASKI 273
G++ GSGYP DP T +L+E +P P VR +WST +I
Sbjct: 163 LRRLYGVR------GSGYPTDPETIAWLAEEYRRNPA-NPPWFVRRTWSTLKRI 209
>gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
Length = 211
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 41/236 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDD---ILDSICK 98
+ GIDEAG+GPV+GP+V C ++ E LK++G DSK L +KR++ I+ S+CK
Sbjct: 2 IAGIDEAGKGPVIGPLVICGVLCDEETV-EYLKSVGVKDSKKLDRRKREELYNIIKSLCK 60
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKY-SLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
V+++ +V + R +Y S+NE+ A + +IR ++ + VY+D
Sbjct: 61 --------VKVLKISV--EDLNRLMEYMSINEILKRAYVEIIRSLMP-----KVVYIDC- 104
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P++ + V + KAD YP+V ASI AKV RD
Sbjct: 105 --------------PDINVERFKHEIEERTGVEVFASHKADEIYPIVSIASIVAKVERDF 150
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP D T +FL + FP +VR W T ++
Sbjct: 151 EIDKLKKIYG------DFGSGYPSDLRTIEFLRSYLREHKSFPPIVRKRWKTLKRL 200
>gi|409096060|ref|ZP_11216084.1| ribonuclease HII [Thermococcus zilligii AN1]
Length = 224
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV +D+ LK LG DSK LT ++R+ + D I
Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVFDEDSIPN-LKALGVRDSKKLTPRRREKLFDEIL--GI 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+++ +SP I + ++ +LNE + + + + V +Y+D E
Sbjct: 62 ADDYVILELSPEEIDS-----REGTLNEFEVN---NFAKALNSLKVKPDVIYIDAADVRE 113
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIAS--KADSTYPVVGAASICAKVSRDSAL 219
E F E I + A I + KAD +P V AASI AKV+RD A+
Sbjct: 114 -------ERFGEEI--------GKFLNFKAEIIAEHKADDKFPPVSAASILAKVTRDRAI 158
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E GSGYP DP T++FL FP +VR +W T KI
Sbjct: 159 ------ERLREEYGEIGSGYPSDPRTREFLMGYYKKHGEFPPVVRRTWETLKKI 206
>gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M]
gi|74579762|sp|Q74MH3.1|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M]
Length = 200
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 39/209 (18%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++GPMV A D+ LK LG DSK LT+++R+++ + I K N+ +
Sbjct: 5 GVDEAGRGPIIGPMV--IALVIGDSG--YLKELGVKDSKLLTKEQREELFNEIVK-NSLV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
+ EI+SP++I +Y+LNE+ LI + + + +D+ PE+Y
Sbjct: 60 KY--EIVSPSLI-------DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENY 107
Query: 164 KKKLSEIFPELI-ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
K ++ + + + I +K + P+V AASI AKV RD ++
Sbjct: 108 KLRILKYLKKRVKIITKNKGEED----------------PLVAAASIVAKVIRDREIEKI 151
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSE 251
Q GI +GSGYP D T+K L +
Sbjct: 152 KEQTGID-----FGSGYPSDKRTRKALEQ 175
>gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C
Length = 209
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 109/234 (46%), Gaps = 32/234 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV A +N+ L+ L DSK LT K+R+ + + I
Sbjct: 3 IAGIDEAGRGPVIGPMVIA-AVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEIL--GV 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+++ + P+VI + ++ +LNE + + + + V +Y D
Sbjct: 60 LDDYVILELPPDVIGS-----REGTLNEFEVE---NFAKALNSLKVKPDVIYADAADVDE 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + ++L E VA KAD +PVV AASI AKV+RD A+
Sbjct: 112 ERFARELGERLNFEAEVVAK--------------HKADDIFPVVSAASILAKVTRDRAV- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
E ++ E GSGYP DP T+ FL FP +VR W T ++
Sbjct: 157 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTTQDMI 205
>gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1]
gi|115305550|sp|Q2FP80.1|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1]
Length = 212
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 109/238 (45%), Gaps = 37/238 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAG+G VLGPMV C + + L LG ADSK L+ K R+ I I A
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAVGC---TDMDDLIALGVADSKKLSSKSREKISADI---KA 55
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNE-VSHDAAIGLIRKVIAAGVNVREVYVDTVG-P 159
+ + I + + I LRR ++NE V+ A LI +N YVD
Sbjct: 56 QFPFSIVIRTAHDI--DELRRT-MTMNEIVARSHAEALI------PLNCTCAYVDACDVS 106
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
E Y++ +S P VA KADS +P V AASI AKV RD +
Sbjct: 107 EERYEETVSSFSPPDCTIVARH--------------KADSLFPPVSAASIIAKVERDRII 152
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
E + E GSGYP DPVT +L++ I P + R SW T +L +K
Sbjct: 153 ------EELSKEYGDIGSGYPSDPVTITYLTKYIRHHNQPPVIARSSWETVKNLLHQK 204
>gi|390962065|ref|YP_006425899.1| ribonuclease HII [Thermococcus sp. CL1]
gi|390520373|gb|AFL96105.1| ribonuclease HII [Thermococcus sp. CL1]
Length = 232
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 106/233 (45%), Gaps = 36/233 (15%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV A + N L+ LG DSK LT K+R+ + D I
Sbjct: 7 GIDEAGRGPVIGPMVI-AAVVLDEVNVPRLEELGVKDSKKLTPKRRERLFDEI------- 58
Query: 104 GWMVEIISPNVICN---SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
V+++ VI + + +LNE + ++ + + V VY+D
Sbjct: 59 ---VQLLDDYVILELWPGEIDSRGGTLNEFEVE---NFVKALNSLKVKPDVVYIDAADVK 112
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E+ F E + D ++ KAD + V AASI AKV+RD A+
Sbjct: 113 EAR-------FGE---EIRKGLDFEAEIIA---EHKADDKFVPVSAASILAKVTRDRAI- 158
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E GSGYP DP T+ FL FP +VR SW T KI
Sbjct: 159 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGTFPPIVRRSWKTLKKI 206
>gi|429216288|ref|YP_007174278.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
gi|429132817|gb|AFZ69829.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
Length = 228
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 48/237 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRG ++G ++ G+ Y ++N+ + LK +G DSK LT +R+++ + + ++
Sbjct: 8 IIGIDEAGRGSIIGELMVGS-YAIRENDIDFLKEIGVKDSKMLTPNQRENLYEILIRKGL 66
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI---RKVIAAGVNVREVYVDTVG 158
+ V I P I + ++N + AAI I ++ I ++ + +D G
Sbjct: 67 F---SVIPIKPYDI-------DRNNINTLEEKAAIQNILNLKRQIGNIFEIKSIIIDKFG 116
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
++ P + + K D + KAD YPVV AASI AKV RD
Sbjct: 117 --------YLKLMPSKLKQLGFKGD-------LIVEPKADVNYPVVSAASIIAKVIRDRR 161
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVF-----GF-PQLVRFSWST 269
++ G++ GSGYP DP E ID VF G+ P +R+SW T
Sbjct: 162 IEILRKLYGVK------GSGYPSDP-------ETIDYVFSELKKGYKPLFIRYSWET 205
>gi|223476982|ref|YP_002581715.1| Ribonuclease HII [Thermococcus sp. AM4]
gi|214032208|gb|EEB73038.1| Ribonuclease HII [Thermococcus sp. AM4]
Length = 230
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 110/233 (47%), Gaps = 30/233 (12%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV +D L + LG DSK LT ++R+ + D I +
Sbjct: 9 GIDEAGRGPVIGPMVIAAVVVDEDKLGNL-EELGVKDSKKLTPRRRERLFDEIIAQ--LD 65
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
+++ + P I + +K +LNE + + + + V VY+D E
Sbjct: 66 DYVIIELWPEEIDS-----RKVTLNEFEVE---NFAKALNSLKVRPDVVYIDAADVKEG- 116
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+ E L+ + KA+ +AD + V AASI AKV RD A+
Sbjct: 117 --RFGEAVGRLL---SFKAE-------IVAEHRADDKFVPVSAASILAKVVRDRAI---- 160
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
E ++ E GSGYP DP T++FL + FP +VR +W T KI K+
Sbjct: 161 --ERLKREYGEIGSGYPSDPRTREFLEKYYREHGDFPPIVRKTWKTVKKIRKK 211
>gi|341581295|ref|YP_004761787.1| ribonuclease HII [Thermococcus sp. 4557]
gi|340808953|gb|AEK72110.1| ribonuclease HII [Thermococcus sp. 4557]
Length = 231
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 30/230 (13%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPM A + N L+ LG DSK LT ++R+ + D I +
Sbjct: 5 GIDEAGRGPVIGPMAIA-AVVVDERNVPKLEELGVKDSKKLTPRRRERLFDEII--SLLD 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
++V + P I + ++ +LNE + ++ + + V +Y+D E+
Sbjct: 62 DYVVLELWPEEIDS-----REGTLNEFEVE---NFVKALNSLKVKPDVIYIDAADVKEAR 113
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
F E + + D ++ KAD + V AASI AKV+RD A+
Sbjct: 114 -------FGE---DIGKRLDFKAEIIAE---HKADDKFVPVSAASIIAKVTRDRAI---- 156
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ + GSGYP DP T+ FL FP +VR SW T KI
Sbjct: 157 --EKLKEKYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRRSWKTLKKI 204
>gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
Length = 212
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 115/238 (48%), Gaps = 38/238 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL--LKNLGCADSKALTEKKRDDILDSICK- 98
V GIDEAG+GPV+GPMV C + EEL L+ +G DSK L+ K+R+++ I K
Sbjct: 4 VAGIDEAGKGPVIGPMVVCGVCC---SEEELVELEKIGVRDSKRLSPKRREELAREIKKL 60
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
N + V + P + M +K ++NE+ D +I + +N +VD+
Sbjct: 61 SNVY----VIKLEPEKLDRLM---EKKTINEILTDCYAEIINE-----LNPDLTFVDS-- 106
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P+ ++LSE + T V A +AD PVV AASI AKV RD
Sbjct: 107 -PDVIPERLSEALKK----------RTGKEVKA--MHRADVLKPVVSAASIVAKVERDRE 153
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
++ + G+ +GSGY D T +FL E FP VR SW T +I ++
Sbjct: 154 IEKIKKELGVD-----FGSGYASDKRTIEFLKEYFKEHGRFPPYVRRSWKTLDRICQQ 206
>gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
Length = 206
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 114/229 (49%), Gaps = 27/229 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ IDEAG+G +LGP+V + E+L K G DSK L+ KR+ + + I +++
Sbjct: 2 TISIDEAGKGSLLGPLVV-SCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLYNLISEKSI 60
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA--AGVNVREVYVDTVGP 159
+ + I+S + I RR ++LNE+ + LI+ I A +V +D++
Sbjct: 61 YHQTI--ILSNHDIDK---RRSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDSI-- 113
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
ES +K S F K+ P +KAD Y VGAASI AKV RD +
Sbjct: 114 -ESNSEKYSLPF---------KSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFI 163
Query: 220 KSWTFQEGIQIE-NNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
KS ++IE + GSGYP D +T +F++ + F +P +R SW
Sbjct: 164 KS------LEIELDQTIGSGYPSDSITTEFVNSYLKKNFEYPDSMRRSW 206
>gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
Length = 507
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 31/230 (13%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+ +DEAG+G +LGP+ + + D +E+ LK++G DSK L+ K+R+ + D I E+A
Sbjct: 137 ISMDEAGKGALLGPL-FISCVVLDDESEKYLKSMGVTDSKKLSPKRREYLYDIII-EHA- 193
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE--VYVDTVGPP 160
L + I++ I RR+ +++N++ + LI+ I ++ + +D++
Sbjct: 194 LYYQTIILTSEKIDQ---RRELHTMNQIETNLFYQLIKDSINNLPKNQQCKIIIDSI--- 247
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E +K S+ F K + P+ +KAD + VGAASI AKV RD +K
Sbjct: 248 EMNTQKYSQPF---------KMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDRWMK 298
Query: 221 SWTFQEGIQIENNA---WGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
Q+E N GSGYP DP+T +++ + +P +R SW
Sbjct: 299 --------QLETNTSHIIGSGYPSDPLTISYVNNFFKKYYVYPNSMRKSW 340
>gi|448465151|ref|ZP_21598718.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
gi|445815126|gb|EMA65061.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
Length = 238
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 113/244 (46%), Gaps = 31/244 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LG+DEAG+GPVLGPM + L ++ DSK LT +R+ I D+ +E
Sbjct: 3 LGVDEAGKGPVLGPMAAAAVLA---DPSTLPADVD--DSKRLTPSRRESI-DAALREADR 56
Query: 103 LGWMVEIISPNVI------CNSM-LRRQKYSLNEVSHD-AAIGLIRKVIAAGV---NVRE 151
+ V + P+ I N++ +R Q ++ D AAIG AAG VR
Sbjct: 57 VAVGVAFVEPDEIDRPETDMNTLTVRGQARAVRAALADRAAIG---DRAAAGPLDEPVR- 112
Query: 152 VYVDTVGPPES-YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
V D ES + ++L E + AD+ P V + A AD P+VGAAS+
Sbjct: 113 VVADAGDTSESRFARRLGEFVAD------GDADADLPEVDVSAAHGADEDDPLVGAASVV 166
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
AKV+RD + + + GSGYP DP T+ FL +D P R SW+T
Sbjct: 167 AKVARDQRMAAVDAD---YAAYDGVGSGYPSDPTTRSFLRAYVDDHGDVPDCARRSWATC 223
Query: 271 SKIL 274
+L
Sbjct: 224 DDVL 227
>gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
gi|121688011|sp|Q0W5R8.1|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
Length = 224
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 33/242 (13%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K ++GIDEAGRGPV+GP+V ++ + ++ +G DSK L+ KKR++ ++
Sbjct: 4 KRTSTIMGIDEAGRGPVIGPLVV-CGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAAL 62
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR--KVIAAGVNVREVYV 154
+N + + + ++ P I ++ + +LN + + GLIR K A ++ +V
Sbjct: 63 --KNKY-KYELSVLPPQEI-DARFESED-NLNRLEVNCFAGLIRSAKPTIAYLDACDVNA 117
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
+ G I + D +V A +ADS YP+V AASI AKV
Sbjct: 118 ERFG-----------------INIKKCLDFELEIVSA---HEADSKYPIVSAASIIAKVH 157
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
RDS ++ + + G + GSGYP DPVT FL P R SW T++ ++
Sbjct: 158 RDSLIREISEKMGEDV-----GSGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVI 212
Query: 275 KE 276
+
Sbjct: 213 AD 214
>gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091]
gi|115305551|sp|Q2NEI6.1|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII
gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091]
Length = 212
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 104/235 (44%), Gaps = 35/235 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRG V+GP+V G K L +G DSK L KKR I I K
Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKK-KKIRFLNRIGVKDSKQLNMKKRTIISRKIKK--- 64
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ II P + R +LNE+ + +I K++ Y+D + E
Sbjct: 65 -IAQFKTIIIPAHTIDEK-RNNDINLNEIETEGMEEII-KIMKPNA----CYIDCIDVRE 117
Query: 162 S-YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ + K+ +I P + + K AD TY +V AASI AKV RD L
Sbjct: 118 NRFHDKIQKINPNMTVVTEHK---------------ADETYKIVSAASIIAKVERDKQL- 161
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
E I+ E + GSGYP D T +L + FP ++R +W T I K
Sbjct: 162 -----EIIRQEYGSVGSGYPSDKNTINYLKTIKNN--QFPPIIRKTWKTIENITK 209
>gi|374724762|gb|EHR76842.1| ribonuclease HII [uncultured marine group II euryarchaeote]
Length = 242
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 31/236 (13%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGPV+GP+V G P + +LK G DSK LT KKR + D ++
Sbjct: 5 GVDEAGRGPVIGPLVVGAVAIPT-ADLPMLKEYGVRDSKDLTHKKRVAMADWFHEQARQR 63
Query: 104 GWMVE-IISPNVICNSMLRRQKYSLNEVSHDA-AIGLIRKVIAAGVNVREVYVDTVGPPE 161
GW+ + I+ P ++ + +L EV A A+ +RK + GV + D +
Sbjct: 64 GWLHQVIVCPPPRIDAAVIHNGLNLLEVELFAEALNPMRKEVEQGVQILNDACDVNA--Q 121
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIAS--KADSTYPVVGAASICAKVSRDSAL 219
+ +++ + +P +++ S KAD+ + +VG ASI AKV RD +
Sbjct: 122 RFTDRIAARL------------TGWPWNQSSMTSEHKADTNHAIVGMASILAKVRRDEII 169
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKK---FLSENIDPVFGFPQLVRFSWSTASK 272
++ + G I GSGYP DP TK FL P + +R+SW T +
Sbjct: 170 EALKVEIGAPI-----GSGYPSDPNTKAALPFLLSGDTPH----EALRWSWKTVKR 216
>gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11]
Length = 250
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 29/237 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAGRGPVLGP+V G PK+ +E +L+ DSK L+ KR D + ++
Sbjct: 7 LIGVDEAGRGPVLGPLVVGLLSIPKE-DEYMLEEQCIEDSKHLSHAKRKLHYDWLNQQVT 65
Query: 102 WLGWMVEII--SPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG- 158
GW V+ I PN I N++ + LN + D ++ + ++ +D
Sbjct: 66 ERGWYVDTIICKPNRIDNAVYAK---GLNILEVDLFASILNRHHRLFTQELDILLDACDV 122
Query: 159 PPESYKKKLSEI---FPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
E + ++SE +P L T+ ++ KAD+ + +VG ASI AKV R
Sbjct: 123 NEERFSNRISERLTDWPWLKTTMIAE-------------HKADTNHRIVGGASILAKVVR 169
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
D ++ G + GSGYP DP T K L I G + +R+SW+T +
Sbjct: 170 DMEIERIAVDVGAPV-----GSGYPADPNTVKALPYLIKE-DGIHEEIRWSWATVKR 220
>gi|432330429|ref|YP_007248572.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
gi|432137138|gb|AGB02065.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
Length = 213
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 110/244 (45%), Gaps = 47/244 (19%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAG+G VLGPMV E++L +LG DSK L+ K+R+ + I K
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAV---AVPAEDVLDDLGVKDSKLLSAKERERLYSLIKKRCK 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK-------VIAAGVNVREVYV 154
++ + I R + ++N A +IRK V A VN+ Y
Sbjct: 59 VATVRLDANEIDAI------RTEMTMNAAVARAHAQVIRKLSPDCAYVDACDVNIFR-YA 111
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
+ V +SY EI E AD +PVV AASI AKV+
Sbjct: 112 EMV---KSYLDNHCEIVSE---------------------HHADEKFPVVSAASIIAKVT 147
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
RD A+ + + + G GSGYP DPVT +FL++ ID P + R SW T IL
Sbjct: 148 RDRAIATLSKKYG------DLGSGYPSDPVTIRFLNDWIDEHRTPPPIARKSWKTVGAIL 201
Query: 275 KEKA 278
++
Sbjct: 202 ARRS 205
>gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
gi|74574695|sp|Q974Z3.1|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|342306230|dbj|BAK54319.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
Length = 208
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 43/240 (17%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V+GIDEAGRG ++GPM+ K++ + LKN+G DSK LT +R+ + D IC +
Sbjct: 2 IVVGIDEAGRGSLIGPMIVA-GVAIKNDRLKFLKNIGVKDSKQLTRNRREKLFDIICSYS 60
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR--EVYVDTVG 158
G+ + +SP I + +LNE+++ A I K+I + V + + +D VG
Sbjct: 61 E--GFTIVKVSPEEIDSE-------NLNELTYKAMI----KIIYSLVEFKPIRISIDKVG 107
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+++ + II + + + I + AD + AASI AKV RD+
Sbjct: 108 N--------TKVVEQEIIKLGMEPN---------IVTNADVYFVEASAASIIAKVIRDNI 150
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
+ + + G +GSGYP DP T ++ P ++R SW KIL+E A
Sbjct: 151 IDTLKSKYG------DFGSGYPSDPKTVNWVKNVYKEYLTPPPIIRRSW----KILQEIA 200
>gi|448440394|ref|ZP_21588557.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
gi|445690290|gb|ELZ42505.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
Length = 234
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 107/241 (44%), Gaps = 29/241 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LG+DEAG+GPVLGPMV + +L + DSK + +R+ I D+ +E A
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLA---DPSDLPSD--ADDSKRIAPSRRESI-DAAIREAAD 56
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR-----EVYVDTV 157
+ V + P + + R +N ++ +R + GV V V D
Sbjct: 57 VAVGVAFVEP-----AEIDRPDTDMNTLTVRGQARAVRAALDGGVAVGLNGPVRVVADAG 111
Query: 158 GPPES-YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
E+ + ++L E + + D P V + A AD PVVGAAS+ AKV+RD
Sbjct: 112 DTSEARFARRLGEFIADRDT---NAGDPGLPTVDVSAAHGADEDDPVVGAASVVAKVARD 168
Query: 217 SALKSWTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ I + A+ GSGYP DP T+ FL +D P R +W+T
Sbjct: 169 RRMAD------IDADYPAYDGLGSGYPSDPTTRDFLRAYVDDHGDVPDCARRTWATCEDA 222
Query: 274 L 274
L
Sbjct: 223 L 223
>gi|383318933|ref|YP_005379774.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
gi|379320303|gb|AFC99255.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
Length = 217
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 113/239 (47%), Gaps = 37/239 (15%)
Query: 42 VLGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSIC 97
+ G+DEAGRGPV+GP+V G A P+ + ++ +G DSK LT K+R+++ L IC
Sbjct: 2 IAGVDEAGRGPVIGPLVVCGVAVSPR--RLKAIEQMGLKDSKLLTPKRREELAVRLKKIC 59
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ ++SP I M + EV A + + A ++ +V +
Sbjct: 60 SHE------LVVVSPEEIDARMAGGSTLNGIEVECFAKVIEALRPKVAYLDACDVNAERF 113
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G + +K+LS + V S+ + AD YP+V AASI AKV RD+
Sbjct: 114 G--LNVRKRLS-----FEVEVVSRHN-------------ADKDYPIVSAASILAKVHRDA 153
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+K + G + GSGYP DP+T KFL P VR SW T S ++ +
Sbjct: 154 LVKKISETVGEDV-----GSGYPHDPITIKFLKSYYAKNGEMPPFVRKSWKTTSAVISD 207
>gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
Length = 212
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 108/241 (44%), Gaps = 43/241 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+G VLGPMV G KD +E + K G ADSK L+ ++R+ + I E
Sbjct: 2 ICGIDEAGKGSVLGPMVIG-GVAGKDLSEFVKK--GFADSKTLSPRRREQFYEEIVAEFK 58
Query: 102 WLGWMVEIISPNVICNSMLR--RQKYSLNEV---SHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V+ +M+ R ++NE+ SH AI + A YVD
Sbjct: 59 --------TTTVVLSAAMIDELRSSMTMNEIVARSHARAITDLMPDTA--------YVDA 102
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
E + F + I + SK KAD Y VV AASI AKV+RD
Sbjct: 103 CDVNEVRYAETISGFLKNDIAIVSK-------------HKADDLYAVVSAASIVAKVTRD 149
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
++ Q G GSGYP DP T FL I+ P + R SW T S ++ +
Sbjct: 150 RMIEDLKSQWG------NIGSGYPSDPDTIAFLKRYIEERGEPPSIARMSWKTISNMMAK 203
Query: 277 K 277
K
Sbjct: 204 K 204
>gi|397780747|ref|YP_006545220.1| ribonuclease HII [Methanoculleus bourgensis MS2]
gi|396939249|emb|CCJ36504.1| ribonuclease HII [Methanoculleus bourgensis MS2]
Length = 216
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 39/242 (16%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K + + G+DEAG+G VLGPMV C + + L L DSKAL K+R+ I + +
Sbjct: 4 KQKGVICGVDEAGKGSVLGPMVVAAVGCREAGD---LAPLPIRDSKALRPKQREAIYEIL 60
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
++ + + I++ + R + S+NE + + G+ YVD
Sbjct: 61 LRD-----FAISIVTIDAAGIDEAR-SRMSMNE-----CVAELHAEALMGLRPESAYVDA 109
Query: 157 VG-PPESYKKKLSEI--FPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
E Y + +++ FP II+ +AD+ Y +VGAAS+ AKV
Sbjct: 110 CDVNAERYGRTVTDYLDFPCDIIS----------------EHRADARYKIVGAASVVAKV 153
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+RD A+K Q G GSGYP DPVT +FL + P R SW T + +
Sbjct: 154 TRDRAIKDLDEQYG------NIGSGYPSDPVTIEFLRGYVRDYGNPPPCARRSWKTVTNL 207
Query: 274 LK 275
+
Sbjct: 208 CQ 209
>gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
Length = 212
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGPVLG M A D+ ++L G DSK L+ ++R+++ ++ + A
Sbjct: 1 MFGVDEAGRGPVLGSMF--AAAVAIDDPDDLPD--GIDDSKNLSPERREELAAALRADEA 56
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ EI + + + + +N ++ A I ++++ G VD E
Sbjct: 57 VAVGVAEITT------TRIDDPETDMNTLTVAAHGEAISRIVSGG---ERGIVDACDTSE 107
Query: 162 SY--KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
S ++ + + PE ITV ++ AD T+ +VGAASI AKV RD+ +
Sbjct: 108 SRFARRVAAAVGPE--ITVEAE-------------HGADETHAIVGAASIVAKVERDAHV 152
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL--KEK 277
Q G GSGYP DP T++FL E ++ P+ R SW T+ L +E+
Sbjct: 153 ARLAEQHG------GVGSGYPSDPNTREFLREYVEAHGELPECARASWQTSKDALAAREQ 206
Query: 278 AVL 280
A L
Sbjct: 207 AGL 209
>gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3]
gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3]
Length = 226
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 104/242 (42%), Gaps = 46/242 (19%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN---LGCADSKALTEKKRDDILDSICK 98
+ GIDEAGRGPV+GPMV +EE LK+ LG DSK LT +R+ + D I
Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVV----DEEKLKSLEELGVRDSKKLTPGRRERLFDEIIA 60
Query: 99 E-NAWL---GWMVEIISPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+ + ++ W EI S V N + +LN + + VY
Sbjct: 61 QLDDYVIIELWPEEIDSREVTLNEFEVENFSKALNSLKVKPDV---------------VY 105
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+D E + E +L+ A +AD + V AASI AKV
Sbjct: 106 IDAADVKEG---RFGEAIGKLLKFKAE----------IVAEHRADDKFVPVSAASILAKV 152
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD A+ E ++ E GSGYP DP T+ FL FP +VR +W T KI
Sbjct: 153 VRDRAI------EKLKEEYGEIGSGYPSDPRTRDFLERYYREHGDFPPIVRRTWKTVEKI 206
Query: 274 LK 275
K
Sbjct: 207 RK 208
>gi|374857159|dbj|BAL60012.1| ribonuclease HII [uncultured candidate division OP1 bacterium]
Length = 207
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 110/237 (46%), Gaps = 42/237 (17%)
Query: 42 VLGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+LGIDEAGRG V+GP+ V G +D + L LG DSK L+ KR
Sbjct: 3 ILGIDEAGRGCVIGPLCVAGVVISAEDLDR--LSALGVRDSKKLSRHKR----------- 49
Query: 101 AWLGWMVEIISPNVICNSMLRRQ-KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT-VG 158
A L +E ++ VI + + +L E+ A +IR+ VY+D VG
Sbjct: 50 ALLAQQIEQLAHRVIVVEIGPSELDENLTEIELQAMGQIIRE-----SQTDRVYLDLPVG 104
Query: 159 PP--ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P E + L E ++ +V ++AD+TYP+V AASI AKVSRD
Sbjct: 105 PQARERFVHALRE----------HAGTHSFALVA---ENRADATYPIVSAASIIAKVSRD 151
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
A+ E ++ E +G GYP +P T+ FL + + FP R W T ++
Sbjct: 152 RAI------ERLREEYGDFGWGYPSEPKTRAFLKKFYECNGRFPDCARAKWRTLQRL 202
>gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT]
gi|121694604|sp|A0B796.1|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT]
Length = 211
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 45/241 (18%)
Query: 41 CVLGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSI 96
+LG+DEAG+GPV+G M V G + +D + L G DSK L+ +R+ + + SI
Sbjct: 3 LILGVDEAGKGPVIGSMFVAGVVFSEEDIFD--LAACGVKDSKLLSPTRRESMERKILSI 60
Query: 97 CKENAWLGWMVEIISPNVICNSM----LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+E+ L + I + SM +R ++ + D AI + AA VN
Sbjct: 61 ARESFVLEVTAQQIDDLRMVMSMNEIMVRAHSRVVSRLQADRAI-----LDAADVNA--- 112
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
E + +++ E+ + I +A AD + VV AASI AK
Sbjct: 113 --------ERFAQRVREVSGKPIDILAEH--------------NADRKHIVVAAASIIAK 150
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
V+RD +++ G GSGYP DP T +FL E I+ P VR SWSTA +
Sbjct: 151 VARDRSIRDLEAALG-----RPLGSGYPSDPATVRFLKEWIEENGDLPSFVRKSWSTAQR 205
Query: 273 I 273
+
Sbjct: 206 L 206
>gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
Length = 211
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 45/239 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GP+V C ++ + E LK LG DSK L+ +KR ++ +
Sbjct: 3 IAGIDEAGKGPVIGPLVVCGVSC-EEKDVEALKKLGVKDSKRLSPEKRKELAEK------ 55
Query: 102 WLGWMVE----IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
L +VE +ISP + + M +K ++NE+ +A + +I K +N V+VD+
Sbjct: 56 -LKEIVEHETIVISPEELNSKM---EKTTINEILKEACVEIISK-----LNPDVVFVDSF 106
Query: 158 G-PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
PE +++L + + + +A VV AASI AK RD
Sbjct: 107 DVKPERLEEELKRLTGKKV-----------------VAMHEGEREVVVAAASIIAKCLRD 149
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ E ++ E +GSGY D T+++L E I P++VR W T + K
Sbjct: 150 EII------EELKREYGDFGSGYASDEKTRRWLEEQIKR-GKIPEIVRKRWKTVENLRK 201
>gi|424814493|ref|ZP_18239671.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
gi|339758109|gb|EGQ43366.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
Length = 219
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 27/235 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRGPV+G M G + + + L+++G DSK L++ KRD I D++
Sbjct: 3 VLGIDEAGRGPVIGSMFIG-GFVTDEKDLGRLEDIGVKDSKKLSDNKRDRIRDNLGSAGD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ VE + + I +SM+ + ++N++ I +VI + +V +D P
Sbjct: 62 SI---VEEFTASSI-DSMM--ESMTINQIE----IKGFARVIDQ-TDPDKVIMDLPEPDA 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
E I + +S + AD ++PVV AASI AK +R+S ++
Sbjct: 111 E----------EFIGKIKKSMNSDNTDMEFKAEHGADDSFPVVSAASIVAKSARESHVEG 160
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ G + SGYP D T FL +D P R SWSTA +I+ +
Sbjct: 161 LHSKYGYD-----FASGYPHDKPTITFLERYLDQEGDLPPETRRSWSTAERIIDQ 210
>gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z]
gi|189043623|sp|A2STJ6.1|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z]
Length = 212
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAG+GPVLGPM+ D +E L+ LG DSK L+ KKR+ + + I +
Sbjct: 3 ICGVDEAGKGPVLGPMITAGVLV-SDMSE--LEMLGIKDSKKLSPKKRESLFEEI--TFS 57
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W + V + +P I ++ ++N + ++R + A V + V+
Sbjct: 58 WKTYTV-VRTPFDI-----DSREGTMNAFTASCHADVVRALCADFVYLDACDVN------ 105
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIAS--KADSTYPVVGAASICAKVSRDSAL 219
++ F E ++ ++ + A + S KAD+ Y VVGAASI AKV+RD +
Sbjct: 106 ------AKRFGENVLRLSGSS--------AHVCSEHKADAKYAVVGAASIVAKVTRDRCI 151
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
++ E GSGYP DP T FL+E I P R SW T IL
Sbjct: 152 AD------LKEEYGEIGSGYPSDPATISFLTEYIRTRGEVPLCARRSWQTVQDIL 200
>gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790]
gi|73917829|sp|Q6KZK4.1|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790]
Length = 199
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 103/235 (43%), Gaps = 40/235 (17%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
CV GIDEAGRGPV+GPMV C D N DSK LT KR I + +
Sbjct: 2 CVCGIDEAGRGPVIGPMVMAMV-CADD------INFYVNDSKLLTRNKRSLIFNDV---- 50
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ L II+P I +++ +K+SLN + A LI K ++Y+D
Sbjct: 51 SGLYHKYYIINPAEIDDAV---KKHSLNNLEEQYAEKLILK-----AECEKIYIDCFDVN 102
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
ES +L I D T V AD +V AASI AKV RD+ ++
Sbjct: 103 ES---RLERILK----------DRTGKEV--ICRHHADRDIKIVSAASIIAKVLRDNEIE 147
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
G +GSGYP DP T +FL +I +VR W T +++
Sbjct: 148 KLKSIYG------DFGSGYPSDPKTLRFLEHSIINHDNIDNIVRKEWKTYKNLVQ 196
>gi|448394694|ref|ZP_21568366.1| ribonuclease HII [Haloterrigena salina JCM 13891]
gi|445662155|gb|ELZ14928.1| ribonuclease HII [Haloterrigena salina JCM 13891]
Length = 247
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 22/246 (8%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M +C + L + G ADSK L ++R+++ +I +E+
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC---EDPAALPD-GIADSKRLAPERREELAATI-REDDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI---AAGVNVREVYVDTV-G 158
+ V ISP I + SL +H AIG + G + + D V
Sbjct: 58 VRVGVAEISPARIDDP--ETDMNSLAVTAHAEAIGDALAGLDFEPGGSDADTLEADAVES 115
Query: 159 PP--------ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
P ++ + + + E ++ S DS + AD P+VGAAS+
Sbjct: 116 APITGLCDACDTDEDRFARRVREACTSLPSTPDSLSDALEIEARHGADDESPIVGAASVV 175
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
AKV RD+ + + + E + GSGYP DP T++FL+ +D P R SWST
Sbjct: 176 AKVERDAHVAALADR---IDEYESVGSGYPSDPNTREFLASYVDERGELPPFARESWSTC 232
Query: 271 SKILKE 276
+L E
Sbjct: 233 EDLLAE 238
>gi|387593201|gb|EIJ88225.1| hypothetical protein NEQG_01669 [Nematocida parisii ERTm3]
gi|387596086|gb|EIJ93708.1| hypothetical protein NEPG_01280 [Nematocida parisii ERTm1]
Length = 354
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 125/305 (40%), Gaps = 97/305 (31%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD-DILDSICKENA 101
+GIDEAGRGP+ GP+VYG Y KD K + DSK + ++KR +D EN
Sbjct: 48 VGIDEAGRGPLAGPLVYGLVYWAKDP-----KTVIYNDSKKVKKQKRGLQHIDLYRDEN- 101
Query: 102 WLGWMVEIISPNVIC-------NSMLRRQKYSLNEVS----------------------- 131
+G+++ ISP I N+ LR+ K S++++
Sbjct: 102 -VGFIIRCISPLFISINMLGVKNNKLRKAKESVSKMPKKKQKIQESPSQVKATKVVNESG 160
Query: 132 -----------------------------HDAAIGLIRKVIA--AGVNV--REVYVDTVG 158
+D +I I +++ AG NV E+++DTVG
Sbjct: 161 LIKFIMPGKNKDVIALSPPIFVNKQCQNLNDLSIDCILNMLSMCAGFNVPISEIFIDTVG 220
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
KK L E V ++ + + KADS Y VGAASI AKV+RD
Sbjct: 221 ----NKKTLHE-------KVKNRMKEYKTIKKITVEEKADSKYQTVGAASILAKVTRD-- 267
Query: 219 LKSWTFQEGIQIENNAWG---------SGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
F E ++ N + SGYP D TK ++ + GFP + R +W
Sbjct: 268 ----MFLEMPEVVNIMYSEAKLPSMPISGYPSDAATKNWMEHSFISGIGFPSIFRITWKP 323
Query: 270 ASKIL 274
IL
Sbjct: 324 IMDIL 328
>gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|448294621|ref|ZP_21484700.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|445586298|gb|ELY40580.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
Length = 214
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 36/245 (14%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C GIDEAG+GPVLGPM+ P +E +L G DSK LT KR + +++ +
Sbjct: 2 CRFGIDEAGKGPVLGPMIAACVCVP---DESVLPE-GIDDSKRLTPAKRGRLSEALLGDE 57
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSH-DAAIGLIRKVIAAGVNVREVYVDTVGP 159
A +G + +SP+ I SL +H +AA ++ + + +V
Sbjct: 58 A-IGIGIAAVSPDRI--DTPETDMNSLTVAAHAEAASEVVEPGMTGICDAGDVDAG---- 110
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ ++ + PE + AD + +VGAAS+ AKV RD +
Sbjct: 111 --RFVHRVGQRLPEGVSLSGEHG--------------ADEHHAIVGAASVVAKVERDRRV 154
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK--EK 277
+ ++ GSGYP DP T++FL+E + P+ R SW T++ L E+
Sbjct: 155 AA------LEAAYGEVGSGYPSDPTTREFLAEYVAENGELPECARASWKTSADALAAVEQ 208
Query: 278 AVLVE 282
L E
Sbjct: 209 GTLAE 213
>gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2]
gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|384432732|ref|YP_005642090.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|74539626|sp|Q97W56.1|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2]
gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
Length = 212
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 47/242 (19%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRG ++GPM+ D + LK +G DSK LT ++R+ + D + N
Sbjct: 3 VGIDEAGRGALIGPMIVAGVVI-SDTKLKFLKGIGVKDSKQLTRERREKLFDIVA--NTV 59
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ V + P I N Y+LN++++DA +I + + N V VD VG +
Sbjct: 60 EAFTVVKVFPYEIDN-------YNLNDLTYDAVSKIILSL--SSFNPEIVTVDKVGDEKP 110
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
ELI + K++ + KAD + AASI AKV RD+ +
Sbjct: 111 --------VIELINKLGYKSN---------VVHKADVLFVEASAASIIAKVIRDNYI--- 150
Query: 223 TFQEGIQIENNAWGSGYPGDPVT----KKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
E Q+ + +GSGYP DP T K F +N +P P ++R SW KIL+ A
Sbjct: 151 --DELKQVYGD-FGSGYPADPRTIKWLKSFYEKNPNP----PPIIRRSW----KILRSTA 199
Query: 279 VL 280
L
Sbjct: 200 PL 201
>gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21]
gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21]
Length = 204
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 106/236 (44%), Gaps = 41/236 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK---NLGCADSKALTEKKRDDILDSICK 98
++GIDEAGRG VLGP+V C EE LK L DSK +T K+R + I K
Sbjct: 3 IVGIDEAGRGSVLGPLVV----CGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIKK 58
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
V I + ++ +LR + +LNE+ A K I + Y+D +
Sbjct: 59 IADC--HPVHISAADI---DLLRSKDVNLNEIEKIAI-----KQIIGNCDPDISYIDCID 108
Query: 159 -PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
PE + ++ E F E + VA AD TYP+V AASI AKV RD
Sbjct: 109 VKPERFTNEI-ENFQENLKVVAEHG--------------ADDTYPIVSAASIVAKVERDQ 153
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ ++ E GSGYP DP T +L P P VR SWST K+
Sbjct: 154 EISR------LKKEFGEIGSGYPSDPKTVAYLKAT--PYKELPIFVRRSWSTVEKM 201
>gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
Length = 248
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 55/284 (19%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGP++G MV + EELL + DSK +T + R + + EN+
Sbjct: 5 LIGIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESF--LALENS 62
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ ++ +SP I + +LN ++ + + +I+ + +T+
Sbjct: 63 SISVYLDYLSPKEI-------DRENLNMLTAGSIVRIIQ------------FFNTL--LS 101
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGA-----AIASKADSTYPVVGAASICAKVSRD 216
SY ++L E++ + + V + + S+ADS YP+V ASI AKVSRD
Sbjct: 102 SYDERLVEVYIDEVKGVKKVVEKECSKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRD 161
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
++ S T G +GSGYP DP +L + + P +VR SWS ILK
Sbjct: 162 LSISSNTSVHG------DFGSGYPSDPRAVLWLERVYNSLEHPPPIVRKSWS----ILKY 211
Query: 277 KA----VLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESP 316
KA +L + +K +++ +F PK +N + P
Sbjct: 212 KAPGWFIL-------------KQRKHKTLWDFIGPKGFKNADKP 242
>gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160]
gi|115305552|sp|Q3IRF6.1|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|76557704|emb|CAI49287.1| ribonuclease H, type 2 [Natronomonas pharaonis DSM 2160]
Length = 212
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 35/235 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAG+GPV+G M P E L + G DSK LT+ +R+ + D + +
Sbjct: 4 LVGVDEAGKGPVVGSMFVAAVRAPT----EALPD-GIDDSKRLTDDRREALADRLRDADR 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+VE ++ ++N+++ A + V A+G E + G +
Sbjct: 59 IDVAVVECQPADI--------DDANMNDLTVAAHAAALDGVAASG----ETVLCDAGDVD 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ + F + + A+ V A AD + +VGAASI AK +R+ ++
Sbjct: 107 AGR------FADRVAAAATLD------VSVAAEHGADGSDDLVGAASIIAKSARERHVEQ 154
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ Q G A GSGYP DP TK FL E + GFP VR SWST +I E
Sbjct: 155 LSEQYG------AVGSGYPSDPTTKAFLREAFEQEGGFPPCVRTSWSTCERIRAE 203
>gi|424811467|ref|ZP_18236718.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
gi|339757193|gb|EGQ40774.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
Length = 217
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 30/234 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRGPV+G M G + +++ L+ LG DSK L+++ RD + + +A
Sbjct: 4 ILGIDEAGRGPVIGSMFIG-GFLVEESELGRLEELGLKDSKKLSDQARDRLRTEV---DA 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ ++ + V+ + M ++ ++N+V + LI + +V +D PE
Sbjct: 60 YGETLLREVEAPVLDDKM---EEVTINDVELEEFAALISR-----AQPEKVVIDL---PE 108
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
++++ E ++ S+ D P V A AD+ YP+V AAS+ AK +R+ ++
Sbjct: 109 HD----ADVYEEKLL---SRLDFD-PEVTA--EHGADAAYPIVSAASVVAKSARERHVER 158
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ G+ + SGYP D T +FL + P R WST+ +IL+
Sbjct: 159 LHEKYGVD-----FDSGYPHDEATIEFLKGYVRSTGDLPDEARRQWSTSQRILR 207
>gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
Length = 212
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 105/224 (46%), Gaps = 32/224 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV A +N+ L+ L DSK LT K+R+ + + I
Sbjct: 3 IAGIDEAGRGPVIGPMVI-AAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEIL--GV 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+++ + P+VI + ++ +LNE + + + + V +Y D
Sbjct: 60 LDDYVILELPPDVIGS-----REGTLNEFEVE---NFAKALNSLKVKPDVIYADAADVDE 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + ++L E VA KAD +PVV AASI AKV+RD A+
Sbjct: 112 ERFARELGERLNFEAEVVAK--------------HKADDIFPVVSAASILAKVTRDRAV- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
E ++ E GSGYP DP T+ FL FP +VR
Sbjct: 157 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVR 195
>gi|333986451|ref|YP_004519058.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
gi|333824595|gb|AEG17257.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
Length = 202
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 43/236 (18%)
Query: 42 VLGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
++GIDEAGRG VLGP+V G A ++N + L+ L DSK L+ K+R +L K+
Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVAI--EENRVKYLERLKLRDSKKLSPKRR-IVLSRKIKKI 59
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG---VNVREVYVDTV 157
A + V+I + ++ +LR + +LNE+ A ++K+I +++ +D +
Sbjct: 60 AEC-YPVKITAQDI---DLLRSKDVNLNEIEKIA----MKKIIGDSEPDISI----IDCI 107
Query: 158 G-PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P+ +K ++ E + E + VA KAD Y +V AASI AKV RD
Sbjct: 108 DVKPKRFKAEI-ETYKENLEVVAE--------------HKADDKYVIVSAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
S + + I+ E GSGYP DP T FL + P VR SW+T +K
Sbjct: 153 SEV------QKIRKEFKEIGSGYPSDPKTIAFLKKT--SYEDLPDFVRKSWATVAK 200
>gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon]
gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon]
Length = 210
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 114/235 (48%), Gaps = 46/235 (19%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAGRGPV+G M N + L+ LG DSK L+ +R+ + I E+A
Sbjct: 6 IGVDEAGRGPVIGSMFVAGVL-----NYDGLEELGVKDSKRLSASRREHLAKII--EDAT 58
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+VE+ + + R++ +LN+++ + L +VI R +VD
Sbjct: 59 EVHVVEMTASEIDKA----REERTLNKIT----VELFSEVINHFQPAR-AFVDA------ 103
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGA-AIAS--KADSTYPVVGAASICAKVSRDSAL 219
+++ PE A+ S Y VG I S KAD YPVV AASI AKV RD ++
Sbjct: 104 -----ADVKPE---RFAANLRSNYKRVGELEIISEWKADDHYPVVSAASIVAKVHRDRSI 155
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFL-----SENIDPVFGFPQLVRFSWST 269
+ + G +I GSGYP DP T +FL + +D + P VR SW T
Sbjct: 156 RVLEAEIGAEI-----GSGYPADPKTIQFLKGLLKGKELDNI---PAYVRRSWKT 202
>gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1]
gi|150421651|sp|Q9YET5.2|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1]
Length = 225
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 45/240 (18%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V+G+DEAGRG ++G +V + ++ L++LG DSK L+ R ++ +E
Sbjct: 3 IVVGVDEAGRGSLVGDLVV-AGFAVEEARLGELQSLGVRDSKQLSPAARVEL----YREI 57
Query: 101 AWLGWM-VEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA-AGVNVREVYVDTVG 158
+ +G+ VE I P I ++N + A ++ ++++ GV+ V VD G
Sbjct: 58 SGVGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYG 110
Query: 159 PPESYKKKLSE--IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ + L+ I P I+ + KADS YPVV AASI AKV RD
Sbjct: 111 DVQGLRLALTRLGIEPRSIL----------------VEEKADSRYPVVSAASIVAKVVRD 154
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG---FPQLVRFSWSTASKI 273
+ L+ G++ GSGYP DP T++++ E VF P+++R++WST K+
Sbjct: 155 ARLQVLRRMYGVR------GSGYPSDPETREWVRE----VFARGEAPRVIRYTWSTVRKL 204
>gi|448458612|ref|ZP_21596278.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
gi|445809124|gb|EMA59171.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
Length = 234
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 47/250 (18%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYC-----PKDNNEELLKNLGCADSKALTEKKRDDILDSI- 96
LG+DEAG+GPVLGPMV P D + DSK L +R+ I ++I
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLADPSVLPADVD----------DSKRLAPARRESIDEAIR 52
Query: 97 CKENAWLGWM----VEIISPNVICNSMLRRQKYSLNEVSHDAAIGL-----IRKVIAAGV 147
+ +G EI P+ N++ R + + A+ +R V AG
Sbjct: 53 ATDRVAVGVAFVEPAEIDRPDTDMNTLTVRGQARAARAALGGAVAADLDEPVRVVADAG- 111
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ E + ++L E + T ++ D+ P V + A AD PVVGAA
Sbjct: 112 DTSE---------SRFARRLGEF---VAGTGSATTDTDLPAVDVSAAHGADEDDPVVGAA 159
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGFPQLVR 264
S+ AKV+RD + + + E A+ GSGYP DP T+ FL ++D P R
Sbjct: 160 SVVAKVARDERMAA------VDAEYAAYDGVGSGYPSDPTTRSFLRAHVDDHGEVPDCAR 213
Query: 265 FSWSTASKIL 274
SW+T +L
Sbjct: 214 RSWATCDDVL 223
>gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
Length = 198
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 33/211 (15%)
Query: 68 NNEELLKNLGCADSKALTEKKRDD---ILDSICKENAWLGWMVEIISPNVICNSMLRRQK 124
N+ L+ +G DSK L+ + R IL SI ++ + EII P +I +
Sbjct: 9 NDMNKLREIGVKDSKELSPESRSRLFIILKSILN---YIDY--EIIEPVIIDRYV---NM 60
Query: 125 YSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP-PESYKKKLSEIFPELIITVASKAD 183
+LN + + I LI K ++ + V +Y+D+ P PE ++ + E +
Sbjct: 61 NALNILEVEVTIKLINKALS-NIQVHTIYIDSPDPKPERFRDMIME-----------RVG 108
Query: 184 STYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDP 243
V+ +KAD PVV AASI AKV RDS + E + E +GSGYP DP
Sbjct: 109 GNVNVIAM---NKADKLIPVVSAASIVAKVVRDSII------ERLHREFGDFGSGYPSDP 159
Query: 244 VTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
T FL I+ P +VR SWSTA K+L
Sbjct: 160 RTIAFLKRWIEKHGDLPPIVRRSWSTAKKML 190
>gi|355571207|ref|ZP_09042459.1| ribonuclease HII [Methanolinea tarda NOBI-1]
gi|354825595|gb|EHF09817.1| ribonuclease HII [Methanolinea tarda NOBI-1]
Length = 211
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 41/234 (17%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE--NA 101
G+DEAG+G VLGP+V C K +E L +LG DSK L+ ++R+ + I + A
Sbjct: 4 GVDEAGKGAVLGPLVVAAVGCGK---KEDLADLGVRDSKELSPQRREALAGEIRRSFPVA 60
Query: 102 WLGWM-VEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
L EI + N+++ R SH A I ++ +A VD
Sbjct: 61 VLSLSPAEIDGRGIGLNTLIAR--------SHAAVISMLAPSVA--------VVDACDVN 104
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
S + F ++V + S + AD +P V AASI AKV RDS +
Sbjct: 105 ASRYGGMVTGF----LSVPCRVVSCH---------HADRQHPAVSAASIVAKVERDSMIH 151
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E ++GSGYP DPVT +FL ++ P + R SW T IL
Sbjct: 152 R------LHDEWGSFGSGYPSDPVTIRFLERYLEEKGEIPPIARKSWETTRTIL 199
>gi|11498229|ref|NP_069455.1| ribonuclease HII [Archaeoglobus fulgidus DSM 4304]
gi|7388077|sp|O29634.1|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
Length = 205
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 48/236 (20%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAG+G V+GP+V C ++E+ L+ LG DSK L++ +R+++ + I K
Sbjct: 4 GIDEAGKGCVIGPLVVAGVAC---SDEDRLRKLGVKDSKKLSQGRREELAEEIRK----- 55
Query: 104 GWMVEIISPNVICNS-MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR---EV-YVDTVG 158
IC + +L+ +L+E I I K A + +R E+ YVD+
Sbjct: 56 -----------ICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPD 104
Query: 159 P-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
PE ++L EI ++ KAD YP+V AASI AKV R+
Sbjct: 105 VIPERLSRELEEITGLRVVA----------------EHKADEKYPLVAAASIIAKVERER 148
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ E ++ + +GSGY DP T++ L E I P VR W T S +
Sbjct: 149 EI------ERLKEKFGDFGSGYASDPRTREVLKEWI-ASGRIPSCVRMRWKTVSNL 197
>gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284996585|ref|YP_003418352.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385772204|ref|YP_005644770.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
gi|385774919|ref|YP_005647487.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
Length = 212
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 116/243 (47%), Gaps = 49/243 (20%)
Query: 43 LGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+GIDEAGRG ++GPM V G A D+ + LK +G DSK LT ++R+ + D I
Sbjct: 3 IGIDEAGRGALIGPMIVAGVAIS--DSKLKFLKGIGVKDSKQLTRERREKLFDIIASTVD 60
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ V + P I N Y+LN++++DA +I + + N V VD VG +
Sbjct: 61 --AFTVVKVFPYEIDN-------YNLNDLTYDAVSKIILSL--SVFNPEIVTVDKVGEEK 109
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
ELI + K++ + KAD + AASI AKV RD+
Sbjct: 110 P--------VIELIRKLGYKSN---------VVHKADVLFVEASAASIIAKVIRDN---- 148
Query: 222 WTFQEGIQIENNAWGSGYPGDPVT----KKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ + ++ +GSGYP DP T K F +N +P P +VR SW KIL+
Sbjct: 149 --YIDELKKVYGDFGSGYPADPRTIKWLKSFYEKNPNP----PPIVRRSW----KILRST 198
Query: 278 AVL 280
A L
Sbjct: 199 APL 201
>gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
Length = 210
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 49/239 (20%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYC-PKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
G+DEAG+GPVLG M C P D + G DSK + +++R+ + ++I + A
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRCDPGDLPD------GVGDSKGIPDERRERLAEAI-RSVA 55
Query: 102 WLGWMVEII-----SPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+G + EI P N++ + +L+ V+ D GL+ AG D
Sbjct: 56 AVG-LAEITPERIDDPETDMNTLTVAAHAEALSAVATDGLSGLVD----AG--------D 102
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
T E + ++ VA + DS + A AD T P+VGAASI AK +R
Sbjct: 103 T--DAERFGRR-----------VADRVDSEIDL---GSAHGADETDPLVGAASIVAKSAR 146
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
++ + + + E A GSGYP DP T++FL +D P R SWST +L
Sbjct: 147 EAHVAA------LADEFGAVGSGYPSDPATREFLKRYVDEHGALPDCARTSWSTCDDVL 199
>gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 108/236 (45%), Gaps = 48/236 (20%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAG+G V+GP+V C ++E+ L+ LG DSK L++ +R+++ + I K
Sbjct: 24 GIDEAGKGCVIGPLVVAGVAC---SDEDRLRKLGVKDSKKLSQGRREELAEEIRK----- 75
Query: 104 GWMVEIISPNVICNS-MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE----VYVDTVG 158
IC + +L+ +L+E I I K A + +R YVD+
Sbjct: 76 -----------ICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPD 124
Query: 159 P-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
PE ++L EI ++ KAD YP+V AASI AKV R+
Sbjct: 125 VIPERLSRELEEITGLRVVA----------------EHKADEKYPLVAAASIIAKVERER 168
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ E ++ + +GSGY DP T++ L E I P VR W T S +
Sbjct: 169 EI------ERLKEKFGDFGSGYASDPRTREVLKEWI-ASGRIPSCVRMRWKTVSNL 217
>gi|448534698|ref|ZP_21621856.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
gi|445704309|gb|ELZ56226.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
Length = 236
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 37/246 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYC-----PKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
LG+DEAG+GP LGPMV P D + DSK + +R+ + +
Sbjct: 3 LGVDEAGKGPALGPMVAAAVIAAPSSLPADVD----------DSKRIAPDRRE-AMAAAL 51
Query: 98 KENAWLGWMV------EIISPNVICNSM-LRRQKYSLNEVSHD--AAIGLIRKVIAAGVN 148
E+ + V EI P+ N++ +R Q ++ D A IG +V+A +
Sbjct: 52 DEDPEVAVGVARVEPAEIDRPDTDMNTLTVRGQARAVRAALADRPAGIGEPVRVVADAGD 111
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
E E + ++L E ++ P V A AD+ P+VGAAS
Sbjct: 112 TSE---------ERFARRLREFVAAGEDGDRAEGGDPVPAVDVTAAHGADADDPLVGAAS 162
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
+ AKV+RD+A+ + + E + GSGYP DP T+ F++ + P R SW+
Sbjct: 163 VVAKVTRDAAMATV---DAAYPEYDDVGSGYPSDPATRSFIAAYVGDHGRLPDCARESWA 219
Query: 269 TASKIL 274
T L
Sbjct: 220 TCEDAL 225
>gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
Length = 234
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 107/245 (43%), Gaps = 37/245 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LG+DEAG+GPVLGPMV + + DSK + +R+ I I +A
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLA-----DPVALPADVDDSKRIAPSRRESIDAEIRATDAV 57
Query: 103 LGWMV-----EIISPNVICNSM-LRRQKYSLNEVSHDA-AIGL---IRKVIAAGVNVREV 152
+ EI P+ N++ +R Q ++ H A+ L IR V AG
Sbjct: 58 AVGVAFVEPAEIDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDEPIRVVADAGDTSEAR 117
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+ +G ES S+ D+ +P V + A AD P+VGAAS+ AK
Sbjct: 118 FARRLG--ESVADPDSDT-----------TDTEHPEVDVSAAHGADEDDPMVGAASVVAK 164
Query: 213 VSRDSALKSWTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
V+RD + I + A+ GSGYP DP T+ FL ++ P R SW+T
Sbjct: 165 VARDERMAD------IDADYPAYDGLGSGYPSDPATRNFLRAYVNDHGNVPGCARRSWAT 218
Query: 270 ASKIL 274
+L
Sbjct: 219 CDDVL 223
>gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 217
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 108/236 (45%), Gaps = 48/236 (20%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAG+G V+GP+V C ++E+ L+ LG DSK L++ +R+++ + I K
Sbjct: 16 GIDEAGKGCVIGPLVVAGVAC---SDEDRLRKLGVKDSKKLSQGRREELAEEIRK----- 67
Query: 104 GWMVEIISPNVICNS-MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE----VYVDTVG 158
IC + +L+ +L+E I I K A + +R YVD+
Sbjct: 68 -----------ICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPD 116
Query: 159 P-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
PE ++L EI ++ KAD YP+V AASI AKV R+
Sbjct: 117 VIPERLSRELEEITGLRVVA----------------EHKADEKYPLVAAASIIAKVERER 160
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ E ++ + +GSGY DP T++ L E I P VR W T S +
Sbjct: 161 EI------ERLKEKFGDFGSGYASDPRTREVLKEWI-ASGRIPSCVRMRWKTVSNL 209
>gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
Length = 212
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 116/243 (47%), Gaps = 49/243 (20%)
Query: 43 LGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+GIDEAGRG ++GPM V G A D+ + LK +G DSK LT ++R+ + D I
Sbjct: 3 IGIDEAGRGALIGPMIVAGVAIS--DSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVD 60
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ V + P I N Y+LN++++DA +I + + N V VD VG +
Sbjct: 61 --AFTVVKVFPYEIDN-------YNLNDLTYDAVSKIILSL--SVFNPEIVTVDKVGEEK 109
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
ELI + K++ + KAD + AASI AKV RD+
Sbjct: 110 P--------VIELIRKLGYKSN---------VVHKADVLFVEASAASIIAKVIRDN---- 148
Query: 222 WTFQEGIQIENNAWGSGYPGDPVT----KKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ + ++ +GSGYP DP T K F +N +P P +VR SW KIL+
Sbjct: 149 --YIDELKKVYGDFGSGYPADPRTIKWLKSFYEKNPNP----PPIVRRSW----KILRST 198
Query: 278 AVL 280
A L
Sbjct: 199 APL 201
>gi|435846199|ref|YP_007308449.1| RNase HII [Natronococcus occultus SP4]
gi|433672467|gb|AGB36659.1| RNase HII [Natronococcus occultus SP4]
Length = 224
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 35/241 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + +E G ADSK L ++R++ LD+ +E+
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVHV----SEPDALPEGIADSKRLAPERREE-LDATLREDDR 57
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V I+P +I NS+ R E + +AA L A+G R DT
Sbjct: 58 IAVGVSEITPPLIDDPETDMNSLAVRAHAEAIEGALEAA-ELPADPSASG---RCDACDT 113
Query: 157 VGPPESYKKKLSEIF-PELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+ + +++++ PE + + A A AD P+VGAAS+ AKV R
Sbjct: 114 DA--DRFARRVADTCEPERDLELELTA-----------AHGADDEDPIVGAASVVAKVER 160
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
D+++ + + G + GSGYP DP T++FL + P R SWST + +L
Sbjct: 161 DASMAALADEYG------SVGSGYPSDPTTREFLESYVADHGELPPFARESWSTCADVLA 214
Query: 276 E 276
+
Sbjct: 215 D 215
>gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis]
Length = 539
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
I S IP+ C + ++GIDEAGRGPV+GPMVY AY K NEE + NLG DSK T
Sbjct: 437 IQKSEIPKECLEEEVIVGIDEAGRGPVVGPMVYAAAYWAKSKNEE-ISNLGFDDSKKFTS 495
Query: 87 KKRDDILDSICKENAWLGWMVEIISPNVICNSMLR 121
+RD +I E +G+++ +SP I +ML+
Sbjct: 496 GQRDGFRKTI-DETGSIGYLIRSLSPKEISANMLQ 529
>gi|448355147|ref|ZP_21543900.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
gi|445635912|gb|ELY89077.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
Length = 221
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GP LG M + + E +L + G ADSK LT +RD+ L +I +EN
Sbjct: 3 IGVDEAGKGPALGSMFAAAVHVER---ETVLPD-GIADSKRLTPARRDE-LAAILRENDQ 57
Query: 103 LGWMV------EIISPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+G V +I P NS+ ++ ++ V+ D + I+ + + D
Sbjct: 58 IGVGVAEITTAQIDDPETDMNSLSVQAHAEAIEAVAADTG---LETPISGHCDACDTDAD 114
Query: 156 TVGPPESYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
+ +++++ E IT AD DS PVVGAASI AKV
Sbjct: 115 ------RFARRVADRCGLECTITAEHGADD-------------DS--PVVGAASIIAKVE 153
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
RD+ ++S G + GSGYP DP T+ FL +D P R SWST +L
Sbjct: 154 RDAHVES--ISAGFP-DCGPVGSGYPSDPNTRAFLESYVDAHGELPACARESWSTCEDML 210
>gi|448500118|ref|ZP_21611597.1| ribonuclease HII [Halorubrum coriense DSM 10284]
gi|445696840|gb|ELZ48919.1| ribonuclease HII [Halorubrum coriense DSM 10284]
Length = 235
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 112/256 (43%), Gaps = 40/256 (15%)
Query: 43 LGIDEAGRGPVLGPMVY-----GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
LG+DEAG+GP LGPMV A P D + DSK + +R+++ +
Sbjct: 3 LGVDEAGKGPALGPMVAAAVVADQASLPTDVD----------DSKRIAPDRREEMAAAFR 52
Query: 98 KE-NAWLGWMV----EIISPNVICNSMLRRQKYSLNEVSHDAAI----GLIRKVIAAGVN 148
+ + +G EI P+ N++ R + + A G IR V AG +
Sbjct: 53 SDPDVAVGVARVEPDEIDRPDTDMNTLTVRGQARAVRRALAALPAETDGPIRVVADAG-D 111
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
E + ++L E + +AD P V A AD PVVGAAS
Sbjct: 112 TSEAR---------FARRLREFVADGGDEAEPRADGALPAVDVTAAHGADEDDPVVGAAS 162
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
+ AKV RD+A+ T + + E + GSGYP DP T+ FL+ + P R SWS
Sbjct: 163 VVAKVVRDAAM---TDLDAARPEYD-LGSGYPSDPTTRAFLAAYVGDHGTLPDCARASWS 218
Query: 269 TASKIL--KEKAVLVE 282
T L E++ L E
Sbjct: 219 TCEDALAAAEQSALDE 234
>gi|386876647|ref|ZP_10118743.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
gi|386805548|gb|EIJ65071.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
Length = 206
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 34/234 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+D+AGRG +LGP+V K N ++L LG DSK L+ K R+D+ I K
Sbjct: 3 ICGVDDAGRGSMLGPLVIAGISLDKKNLKQL-SLLGVKDSKKLSPKSREDLYKKIIK--I 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ V ISP I S+ + + LN + ++ K+ N YVD+ P
Sbjct: 60 ADSYYVVKISPKSIDASV---KNHCLNVLEAKYMAKVVSKL-----NPDTSYVDSCDVNP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ +++S++ I +Y ADS + +V AASI AKV+RD A+
Sbjct: 112 SRFGREISKMSDNHKIK-------SY--------HHADSRFVIVSAASILAKVARDRAIT 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+++ GSGYP D VT KF++ P VR SW KI+
Sbjct: 157 KLR-------KDHNLGSGYPSDSVTVKFVTNYYKKNHVMPSFVRKSWKPVQKIV 203
>gi|448376204|ref|ZP_21559488.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
gi|445658222|gb|ELZ11045.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
Length = 235
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 27/240 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAG+GP +GPM+ A + + L + G ADSK L +R+D+ + +A
Sbjct: 6 VFGVDEAGKGPAIGPMI---AAAVRVADRGHLPD-GMADSKDLAPDRREDLAARLRSADA 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ V I+P+ I + + +N ++ A G I +A + VD PP
Sbjct: 62 -IAVGVCAITPDRIDD-----PETDMNGLAVAAHTGAIEAALADADHGSGADVD---PPA 112
Query: 162 SYKKKL---SEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
++ F + S +P+ AA AD+ P+VGAASI AKV RD+
Sbjct: 113 GVCDACDTDADRFARRVTDACS-----HPIDVAA-EHGADADDPLVGAASIVAKVERDAR 166
Query: 219 LK--SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + T+ + + GSGYP DP T+ FL ++D P R SW+T +L +
Sbjct: 167 MADVAETYADAGYGDP---GSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 223
>gi|386002343|ref|YP_005920642.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
gi|357210399|gb|AET65019.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
Length = 207
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 29/231 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G DEAG+GPV+G M +D +L LG DSK L +R+ + +I E
Sbjct: 1 MGADEAGKGPVIGSMFVAGVVIDEDRLFDL-AALGVKDSKLLAPARREAL--AIRIEKIA 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
L V + P VI R+ S+NE+ + KV+ R + E
Sbjct: 58 LDRYVLEVRPEVIDEL---RKIMSMNEI----MVRSFSKVLENLSADRAILDAADVKAER 110
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+ +++ E+ + VA +AD +PVV AASI AKV RD +++
Sbjct: 111 FARRVKEVSKTSMEVVAE--------------HRADRNHPVVAAASILAKVRRDLSVREI 156
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
G +I GSGYP DP T +FL + P + R SW TA +I
Sbjct: 157 EKAVGREI-----GSGYPSDPATIRFLESWVGEHGDLPPVARQSWKTAERI 202
>gi|448311343|ref|ZP_21501107.1| ribonuclease HII [Natronolimnobius innermongolicus JCM 12255]
gi|445605171|gb|ELY59102.1| ribonuclease HII [Natronolimnobius innermongolicus JCM 12255]
Length = 242
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 109/246 (44%), Gaps = 27/246 (10%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M YCP +N G ADSK L ++R+++ +I ++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVYCPDPDN----LPAGIADSKRLAPERREELAAAIRDDDRL 58
Query: 103 LGWMVEIIS-----PNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ E+ + P NS+ + + G + V+ DT
Sbjct: 59 RVGVAEVPTRRIDDPETDMNSLAVAAHAEAIDAALAGLEGESNDDLENPVSGLCDACDTD 118
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI----ASKADSTYPVVGAASICAKV 213
E + +++ + I AS D+T + + AD P+VGAASI AKV
Sbjct: 119 A--ERFARRVHDA---CSIGAASTPDATADSLEIDLDLEARHGADDESPIVGAASIVAKV 173
Query: 214 SRDSALKSWTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
RD+ ++S + +A+ GSGYP DP T+ FL +D P R SWST
Sbjct: 174 ERDAHVES------LSAAYDAYETVGSGYPSDPNTQAFLEAYVDDHGELPVCARESWSTC 227
Query: 271 SKILKE 276
K+L E
Sbjct: 228 EKLLAE 233
>gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|448282223|ref|ZP_21473512.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|445576857|gb|ELY31305.1| ribonuclease HII [Natrialba magadii ATCC 43099]
Length = 221
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 38/239 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLG M + + E +L + G ADSK LT +RD++ ++ +E+
Sbjct: 3 IGVDEAGKGPVLGSMFAAAVHVER---ETVLPD-GIADSKRLTPARRDELAATL-REDDR 57
Query: 103 LGWMV------EIISPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+G V +I P NS+ +R ++ V+ D V+ A + D
Sbjct: 58 IGVGVAEITTAQIDDPETDMNSLSVRAHAEAIEAVAAD-------TVLEAPITGLCDACD 110
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
T + + +++++ L T++++ AD P+VGAASI AKV R
Sbjct: 111 TDA--DRFARRVADRC-GLECTISAE-------------HGADDDSPIVGAASIIAKVER 154
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
D+ ++S + + GSGYP DP T+ FL +D P R SWST +L
Sbjct: 155 DTHVESVS---AAFPDCGPVGSGYPSDPNTRAFLESYVDAHGELPACARESWSTCEDVL 210
>gi|154151483|ref|YP_001405101.1| ribonuclease HII [Methanoregula boonei 6A8]
gi|166226624|sp|A7I9P7.1|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8]
Length = 213
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 107/244 (43%), Gaps = 49/244 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI---CK 98
+ G+DEAG+G VLGPMV + E++ G DSK L+ +R+ + I CK
Sbjct: 2 ICGVDEAGKGSVLGPMVIAGVGV---GSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCK 58
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT-- 156
+ EI RR E++ + + V+ A + YVD
Sbjct: 59 VATVVISAAEI--------DAFRR------EMTLNTCVARAHAVVIAQLAPEIAYVDACD 104
Query: 157 VGP---PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
V P E+ + LS P I++ ADSTYPVV AASI AKV
Sbjct: 105 VNPFRYAETVRGYLSS--PCEIVS----------------EHHADSTYPVVSAASIVAKV 146
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+RD + + G QI GSGYP DP T +L+ ID P + R SW T S +
Sbjct: 147 TRDREIAKLAKKYG-QI-----GSGYPSDPETIAYLNAYIDEHRIPPPIARKSWKTVSTL 200
Query: 274 LKEK 277
L +K
Sbjct: 201 LAKK 204
>gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
Length = 208
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 35/230 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LGIDEAGRG ++GPM+ + EE LK LG DSK LT K+R+++ ++I + +
Sbjct: 3 LGIDEAGRGCLIGPMIVAGIVLDEKGREE-LKELGVKDSKRLTRKRREELFNAIIERSK- 60
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
G V P L +LN +++ +I + + +N + V VD VG
Sbjct: 61 -GIAVAKAEP-------LEIDSNNLNALTYRKVSEIISSL--SWLNPKIVTVDKVG---- 106
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
K +E+ ELI + A+ + KAD + +ASI AKV RD+ +
Sbjct: 107 ---KETEVI-ELIERLGFVAN---------VVHKADELFIEASSASIIAKVIRDNII--- 150
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
E ++++ +GSGYP DP T +++ + + P ++R SW K
Sbjct: 151 ---ERLKLKYGDFGSGYPSDPKTIRWVKDLVSKGEEPPNIIRKSWKLLQK 197
>gi|354610229|ref|ZP_09028185.1| ribonuclease HII [Halobacterium sp. DL1]
gi|353195049|gb|EHB60551.1| ribonuclease HII [Halobacterium sp. DL1]
Length = 210
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 102/239 (42%), Gaps = 47/239 (19%)
Query: 42 VLGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
G+DEAG+GPVLG M A P D + G ADSK L ++RD+ LD +
Sbjct: 2 AFGVDEAGKGPVLGSMFAAAVAGDPADLPD------GVADSKRLAPERRDE-LDERIRAR 54
Query: 101 AWLGW----MVEIISPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+G + I P N++ + Q +L++V+ D GL V A V+
Sbjct: 55 CAVGVAEIPVARIDDPETDMNALTVAAQADALSQVASD---GLAGHVDAGDVDA------ 105
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
E + +++++ + A AD Y V AASI AKV+R
Sbjct: 106 -----ERFGRRVADAVTADVDITAEHG--------------ADDEYDFVAAASIVAKVAR 146
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
DS + G GSGYP DP T++FLSE + P R SW T+ L
Sbjct: 147 DSHVAELATGHGD------VGSGYPSDPTTREFLSEYVREHGCLPDCARESWQTSRDAL 199
>gi|340345418|ref|ZP_08668550.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520559|gb|EGP94282.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 215
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 36/240 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+D+AGRG +LGP+V K + +L K LG DSK LT K R+++ I A
Sbjct: 10 ICGVDDAGRGSMLGPLVIAGIIISKKDIPKLSK-LGVKDSKQLTPKLREELYKKII---A 65
Query: 102 WL-GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-P 159
+ + V ISP +I S+ K++LN + +I K+ N YVD+
Sbjct: 66 LVDNYYVTKISPKIIDASV---TKHNLNHLEAKYMAKVISKL-----NPDTSYVDSCDVN 117
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P+ + K+++++ K +Y ADS + VV AASI AKV+RD A+
Sbjct: 118 PKRFGKEIAKLSKH-------KKIRSY--------HHADSRFIVVSAASIIAKVTRDRAI 162
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV 279
+N GSGYP D T F++ P VR SW +IL +K++
Sbjct: 163 LKLR-------KNYDLGSGYPSDSKTIDFVASYYKINQVLPIFVRKSWKPTQQILNKKSL 215
>gi|302348278|ref|YP_003815916.1| ribonuclease HII [Acidilobus saccharovorans 345-15]
gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
Length = 223
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 39/232 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAGRG ++G ++ + K+ N LLK++G DSK LT R+ + SI +
Sbjct: 4 IIGVDEAGRGSLVGELML-ACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVR--- 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAI-GLIRKVIAAGVN---VREVYVDTV 157
LG V + P + + ++N + AA+ GL KV+ + + V+ +Y+D
Sbjct: 60 -LGEFVVVPIPPAEID------RENVNVLEERAALKGL--KVLLSRLRPELVKAIYIDKF 110
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G I P + + + + KAD+ Y VV AASI AKV RD
Sbjct: 111 GE--------LRILPGELKRLGFRGR-------LVVEPKADANYVVVSAASIIAKVIRDR 155
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
++ G++ GSGYP DP+T ++ + + P ++R+SW T
Sbjct: 156 RIEVLRSMYGVE------GSGYPSDPLTVSWVMKVLSS-GARPPIIRYSWGT 200
>gi|409729992|ref|ZP_11271603.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|448722297|ref|ZP_21704835.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|445790008|gb|EMA40681.1| ribonuclease HII [Halococcus hamelinensis 100A6]
Length = 212
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 45/242 (18%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAGRGPVLG + C + + +L G DSK L+ +R+ ++D + ++
Sbjct: 3 FGVDEAGRGPVLGSLFVA---CVRADPADLPA--GIDDSKRLSPARREALVDDLHGDDRV 57
Query: 103 LGWMVEIIS-----PNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+VE+ + P N++ + ++++V+ D G++ DT
Sbjct: 58 STAVVEVTASEIDDPETDINALTITAAAEAIDDVAEDGLTGIVDAC------------DT 105
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ ++ + VA++ D V AD + +VGAASI AKV+RD
Sbjct: 106 --DAARFGRR---------VVVATETD-----VEVTAEHGADENHDLVGAASIVAKVARD 149
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
S + E + E+ GSGYP DP T++FL E + P R SW T+ +L
Sbjct: 150 SHI------ERLADEHGPLGSGYPSDPNTREFLREYVREHGELPPFARASWKTSRDVLDA 203
Query: 277 KA 278
A
Sbjct: 204 AA 205
>gi|448415068|ref|ZP_21577939.1| ribonuclease HII [Halosarcina pallida JCM 14848]
gi|445681186|gb|ELZ33622.1| ribonuclease HII [Halosarcina pallida JCM 14848]
Length = 224
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 35/243 (14%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P ++G DEAG+GPVLGPMV + + L + G DSK L+ +R++I ++ +E
Sbjct: 6 PVLVGSDEAGKGPVLGPMVAAAVR----ADADALPD-GIDDSKRLSSARREEIAATL-RE 59
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ + V + P I R +N ++ A + + V G EV D
Sbjct: 60 HEGVEIGVAFVEPERI-----DRPDTDMNALTVAAHVEAVAAVAREG---DEVVTDAGDV 111
Query: 160 PES-YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
ES + +++ E + V+ A+ +AD TYP VGAAS+ AKV RD+
Sbjct: 112 NESRFGRRVRTGVEEAGVAVSVTAEH-----------RADETYPHVGAASVVAKVERDAR 160
Query: 219 LKSWTFQEGIQIENNAWG---SGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ I + A+G SGYP DP T++FL + P R SWST +L
Sbjct: 161 MAE------IDEDVTAYGPVGSGYPSDPTTREFLRRYVGETGELPDCARASWSTCDDVLD 214
Query: 276 EKA 278
A
Sbjct: 215 AAA 217
>gi|336122129|ref|YP_004576904.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
gi|334856650|gb|AEH07126.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
Length = 305
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 111/265 (41%), Gaps = 50/265 (18%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK--NLGCADSKALTEKKRDDI-------- 92
LG+DEAGRGPVLGPMV K ++L K LG DSK L+ KR+++
Sbjct: 41 LGLDEAGRGPVLGPMVIALV---KATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNY 97
Query: 93 -LDSICKENAWLGWMVEIISPNVI--------CNSMLRRQKYSLNEVS------------ 131
+ SI E + M+E + N I NS+L+ + +
Sbjct: 98 EVKSIILEAKDIDKMMEKTNLNKIEIMVFSKLINSVLKEEYKDYKNKNHKLNNKLNNNEV 157
Query: 132 HDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGA 191
+D ++Y+D E K ++I +L++ + ++
Sbjct: 158 NDKINSNKVNNNKINNKKIDIYIDACSSNE--KAFSNQIKSKLVVY-----NDNIKIIA- 209
Query: 192 AIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSE 251
KAD Y +V AASI AKV RD + ++ G GSGYP D T +L
Sbjct: 210 --EHKADDKYKIVSAASIVAKVIRDKIIDNYKEIYG------EIGSGYPSDKTTINYLKN 261
Query: 252 NIDPVFGFPQLVRFSWSTASKILKE 276
+ P++ R SW T+ ILKE
Sbjct: 262 YVKEHGTLPEIARKSWKTSKNILKE 286
>gi|448384513|ref|ZP_21563351.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
gi|445658579|gb|ELZ11397.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
Length = 223
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 30/236 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M +C D ++L G DSK L+ ++R+++ ++ + +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC--DAPDDLPD--GIRDSKRLSPERREELAATL-RGDDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAI-GLI--RKVIAAGVNVREVYVDTVGP 159
+ V I+P I + SL +H AI G + R +A+ D
Sbjct: 58 IAIGVAEITPARIDDP--ETDMNSLAVAAHATAIEGALADRARVASADEQFSGLCDACDT 115
Query: 160 -PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+ + +++++ +TV ++ AD P+VGAASI AKV RDS
Sbjct: 116 DADRFARRVADACSLEALTVDAR-------------HGADDESPLVGAASIVAKVERDSH 162
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + + E GSGYPGD T++FL++ +D P R SWST +L
Sbjct: 163 VAA------LADEYGPIGSGYPGDSTTREFLADYVDEHGDLPPFARASWSTCEDVL 212
>gi|448320192|ref|ZP_21509680.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
gi|445606598|gb|ELY60502.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
Length = 222
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 43/244 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + + + L G ADSK L ++R+++ ++ +E+
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHV---ADPDALPE-GIADSKRLVPERREELAATL-REDDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP--- 159
+ V I+P++I N SL +H AI + + + +V D+ P
Sbjct: 58 IAVGVSEITPSLIDNP--ETDMNSLAVRAHAEAIEEMLEAV-------DVSADSSAPGLC 108
Query: 160 ------PESYKKKLSEIF-PELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+ + +++++ PE + + ++ AD P+VGAAS+ AK
Sbjct: 109 DACDTDADRFARRVADACEPEYELEIEAE-------------HGADDQDPIVGAASVVAK 155
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
V RD+++ + + G GSGYP DP T+ FL + P R SWST +
Sbjct: 156 VERDASMAALADEYG------PVGSGYPSDPTTRAFLESYVADHDSLPPFARESWSTCAD 209
Query: 273 ILKE 276
+L +
Sbjct: 210 VLAD 213
>gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
Length = 228
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 19/235 (8%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M +C + L + G ADSK L+ ++R+++ +I +E+
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC---EDPTALPD-GIADSKRLSPERREELAAAI-REDDG 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAI-GLIRKVIAAGVNVREVYVDTVGPPE 161
+ V I+P I + SL +H AI G + + + E
Sbjct: 58 IRVGVAEITPARIDDP--ETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDTDAE 115
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ +++++ +L +S + + AD P+VGAAS+ AKV RD+ + +
Sbjct: 116 RFARRVTDACTDLFADASSALE-----INIEARHGADDESPIVGAASVVAKVERDAHVAA 170
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ G GSGYP DP T++FL + P R SWST +L E
Sbjct: 171 LADEYG------PVGSGYPNDPNTREFLESYVGEYGDLPPCARESWSTCEDVLAE 219
>gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1]
Length = 205
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 36/234 (15%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGP++GPMV C + E L+ +G ADSK L+ +R+ + +
Sbjct: 5 GIDEAGRGPLIGPMVMAIL-C---GDRESLEIIGVADSKKLSPGRRESLFARLQS----Y 56
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
+ IISP+ I + + QK ++ E ++ + K+ + VYVD+ E
Sbjct: 57 KYNFVIISPSEI-DRYVEHQKLNVLEETYAS------KLASWAPASSTVYVDSFDVNEL- 108
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+L + E ++ +V KAD YP V AASI AKV RD +
Sbjct: 109 --RLQSLLME---------NTKRQIV---CRHKADEIYPCVSAASIIAKVIRDREI---- 150
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ + + +GSGYP DP T F+ + +VR W T +L +K
Sbjct: 151 --DKLHKDYGDFGSGYPSDPRTINFVKNALKNGINIDSIVRHQWKTYKSMLNKK 202
>gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500]
Length = 589
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 37/258 (14%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
ES K+ +G+DEAG+G VLGP+V A E+ LK G DSK L+ ++R+++
Sbjct: 258 ESTKNDMSYIGVDEAGKGAVLGPLVIA-AVSLDSAAEQYLKAAGVKDSKKLSAQRREELY 316
Query: 94 DSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK------------ 141
D I KE A L + I+ I +RR+ +LN++ D + LI++
Sbjct: 317 D-IIKERA-LYTTIYILEARDI---DIRRKTQTLNKIESDIFLELIQRSLNHLKSNPQEF 371
Query: 142 ---------VIAAGVNVREVYVDTVGPPESYKKKLSEIFPEL-IITVASKADSTYPVVGA 191
++ G E + + P+ YK +L + ++ + P
Sbjct: 372 IEEVEENNNIVVGG----EQFNNNSNKPKKYKIQLDSLESNTGKFSLPFRDAFPAPEHTV 427
Query: 192 AIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSE 251
++ADS Y GAASI AKV RD A+ + ++ + N G GYP D T F+
Sbjct: 428 ICENQADSKYVSTGAASIIAKVERDRAIAA--LEKSV---NTPVGCGYPSDATTLTFIES 482
Query: 252 NIDPVFGFPQLVRFSWST 269
VR SW T
Sbjct: 483 YYQRNGNDHPDVRLSWKT 500
>gi|393795311|ref|ZP_10378675.1| ribonuclease HII [Candidatus Nitrosoarchaeum limnia BG20]
Length = 205
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 111/239 (46%), Gaps = 44/239 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+D+AGRG +LGP+V K + + LK LG DSK LT K R+++ I +
Sbjct: 3 ICGVDDAGRGSMLGPLVIAGVSLKKSDVSK-LKLLGVKDSKQLTPKLREELYKKII--SL 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ V ISP +I S+ +K+ LN + +I K +N YVD+ P
Sbjct: 60 VDNYYVAKISPKLIDASV---KKHDLNHLEAKYMAKVILK-----LNPDTSYVDSCDVNP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ K++S++ +K +Y ADS + VV AASI AKV+RD +
Sbjct: 112 NRFGKEISKL-------SNNKKIRSY--------HHADSRFIVVSAASIIAKVTRDREIM 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFL-----SENIDPVFGFPQLVRFSWSTASKIL 274
+N+ GSGYP D T F+ + I PVF VR SW KIL
Sbjct: 157 KLR-------KNHDLGSGYPSDSKTIDFVKLYYKTNQILPVF-----VRKSWKPTQKIL 203
>gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I]
gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I]
Length = 215
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 38/231 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGPV+G M +D E+L+ +LG +SK LT KR + I K A
Sbjct: 6 VAGIDEAGRGPVIGSMFVALVAIEQDQLEKLV-SLGLKESKMLTPNKRRYFYNLIMK-TA 63
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + E+ + + K +L+E++ + L+ + V + V VD VG
Sbjct: 64 KLVLIKEVKAEEI--------DKRNLSELTIEVMKELLETALNK-VKIDVVCVDIVGNGA 114
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
++ L E+FP++I+ K D++ P AASI AK +R+ +
Sbjct: 115 KQRRALGEVFPDVIVM-----------------KKGDASCPAAAAASIVAKEARERHVSQ 157
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
+ G +GSGYP DP T ++LS P P +VR W T +
Sbjct: 158 LRARYG------DFGSGYPSDPKTLRWLSVT-RP---LPPIVRKKWKTIRR 198
>gi|448339615|ref|ZP_21528633.1| ribonuclease HII [Natrinema pallidum DSM 3751]
gi|445619604|gb|ELY73131.1| ribonuclease HII [Natrinema pallidum DSM 3751]
Length = 222
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 33/237 (13%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + + L + G DSK LT +R+D+ S+ ++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHL---EDPAALPD-GIRDSKRLTPDRREDLAASLRTDDRI 58
Query: 103 LGWMVEII-----SPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ EI P NS+ + + D AIG AAG +
Sbjct: 59 AIGVAEITPARIDEPGTDMNSL----AVEAHATAIDDAIGSFESAAAAGDRPSGLCDACD 114
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ + +++++ L + V ++ AD P+VGAASI AKV RD+
Sbjct: 115 TDADRFARRVADAC-SLEVDVDAR-------------HGADDDAPLVGAASIIAKVDRDA 160
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + + E GSGYPGD T++FL+ +D P R SWST L
Sbjct: 161 HIAA------LADEYGPIGSGYPGDATTREFLASYVDEHGSLPPFARESWSTCEDAL 211
>gi|383620733|ref|ZP_09947139.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|448698324|ref|ZP_21698963.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|445780943|gb|EMA31813.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
Length = 223
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 105/239 (43%), Gaps = 32/239 (13%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + E + G ADSK L+ +RD + ++I +E+
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHL----EEPAVLPDGIADSKRLSPSRRDALAETI-REDDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ V + P I + SL +H AAI +AA + + +
Sbjct: 58 ISVGVAEVPPERIDDP--ETDMNSLTVRAHAAAIEDALADVAADDRIAGLCDACDTDADR 115
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAI-----ASKADSTYPVVGAASICAKVSRDS 217
+ +++ AD+ P G AD P+VGAASI AKV RD+
Sbjct: 116 FARRV--------------ADACGPFEGEGTLEVDARHGADDDSPLVGAASIVAKVERDA 161
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + I E GSGYPGD T++FLS+ + P R SWST ++L E
Sbjct: 162 HVAA------IADEYGDVGSGYPGDSTTREFLSDYVAEHGELPPFARSSWSTCEELLAE 214
>gi|448475115|ref|ZP_21602833.1| ribonuclease HII [Halorubrum aidingense JCM 13560]
gi|445816586|gb|EMA66473.1| ribonuclease HII [Halorubrum aidingense JCM 13560]
Length = 260
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LG+DEAG+GPVLGPMV + G DSK LT ++R+ + +I +A
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLASPSS-----LPAGIDDSKRLTPERRESLDAAIRDADAV 57
Query: 103 LGWMV-----EIISPNVICNSML-----RRQKYSLNEVSHDAAIGL-----IRKVIAAGV 147
+ EI P+ N++ R + +L + +G +R V AG
Sbjct: 58 AVGIAFVDTGEIDRPDTDMNTLTVSGQARAVRAALADSIDGGLVGADRDEPVRVVADAGD 117
Query: 148 NVREVYVDTVGP--------PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
E + +G PE ++ L + P V A AD
Sbjct: 118 TSEERFARRLGEHITAPADWPEDGPASPADDRRGLDDGLDPAGGRALPGVDVEAAHGADE 177
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
P+VGAAS+ AKV+RD+ + + + + A GSGYPGD T+ FL + +
Sbjct: 178 DDPLVGAASVVAKVARDARMDAI---DATYPDYAAVGSGYPGDATTRAFLRDYVADHGEV 234
Query: 260 PQLVRFSWSTASKIL 274
P R SWST +L
Sbjct: 235 PDCARRSWSTCDDVL 249
>gi|433422650|ref|ZP_20406055.1| ribonuclease HII [Haloferax sp. BAB2207]
gi|432198565|gb|ELK54835.1| ribonuclease HII [Haloferax sp. BAB2207]
Length = 215
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 104/237 (43%), Gaps = 40/237 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI--CKEN 100
+G+DEAG+GPVLGPMV D + G ADSK L ++R+++ + C +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRECDDI 57
Query: 101 AWLGWMVE---IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ VE I P N + R + A L V AG +V E
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAADVAADADEL---VCDAG-DVSE------ 107
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ +++ E E ++VA +A +AD + +VGAASI AKV RD
Sbjct: 108 ---SRFGRRVREGLAEAGVSVAVRAQH-----------RADDEHAIVGAASIVAKVERDR 153
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I E GSGYP D T++FL E + P R SWST + ++
Sbjct: 154 RV------EAIADEYGEVGSGYPSDGTTREFLREYVRDHGILPDCARKSWSTCADLV 204
>gi|448610387|ref|ZP_21661133.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
gi|445745011|gb|ELZ96481.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
Length = 215
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV E L + G ADSK L+ +R++ L+ +E
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRA----ESETLPD-GIADSKRLSAARREE-LNETLRERDD 56
Query: 103 LGWMVEIISPNVICN--SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ V + P I + + + R + A +++ +V E
Sbjct: 57 VAVGVAFVEPATIDDPETDMNRLTVRAQVEAAAAVAADDDQLVCDAGDVSE--------- 107
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ +++ + E ++V A +AD + +VGAASI AKV RD +
Sbjct: 108 SRFGRRVRDGLAETGLSVDVHAQ-----------HRADDEHAIVGAASIVAKVERDRRV- 155
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
E I E A GSGYP D T+ FL E + P R SW+T + +L
Sbjct: 156 -----EAIADEYGAVGSGYPSDQTTRDFLREFVREHGILPDCARKSWATCADLL 204
>gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2]
gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2]
Length = 215
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 104/238 (43%), Gaps = 42/238 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV D + G ADSK L ++R+++ + +E
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAEL-RERDD 56
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V + P I N + R + A L V AG +V E
Sbjct: 57 ISVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADEL---VCDAG-DVSE----- 107
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++ E E ++VA +A +AD + +VGAASI AKV RD
Sbjct: 108 ----SRFGRRVREGLAEAGVSVAVRAQH-----------RADDEHAIVGAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I E GSGYP D T++FL E + P R SWST + ++
Sbjct: 153 RRV------EAIADEYGEVGSGYPSDGTTREFLREYVRDHGILPDCARKSWSTCADLV 204
>gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19]
gi|74561281|sp|Q8TYV5.1|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19]
Length = 210
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 42/237 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+GIDEAGRGPV GPMV PK EL LG DSK LT R ++ ++ +
Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAPK---REL--GLGARDSKELTRSARRRLIRALMSDER 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG--P 159
L + I+ P I + + +A L+R+ + EV +D G
Sbjct: 59 -LRVDLRIVWPWEIDEE-------GVAKAEFEAIRELVRRAMPD-----EVILDKPGNYS 105
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
PE +++L PE I +A + +AD+ Y VV AASI AK RD +
Sbjct: 106 PERLRRELD--LPEGINLIAEE--------------RADAKYEVVSAASIVAKTYRDWIV 149
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ +++E GSGYP DP T L + + R SW T ++ E
Sbjct: 150 RL------LELEYGEVGSGYPSDPRTVDRLRRELRRGGELLKYFRRSWETYKRVESE 200
>gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
Length = 205
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 108/234 (46%), Gaps = 34/234 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+D+AGRG +LGP+V K N +L +LG DSK L+ K R+ + I +
Sbjct: 3 ICGVDDAGRGSMLGPLVISGISINKKNLRKL-SSLGVKDSKKLSPKSRELLYKQIIE--L 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ + I+P I S+ +K+ LNE+ ++ K+ + YVD+ P
Sbjct: 60 VDDYYIAKITPRSIDASV---KKHGLNELEAKYMAKVVLKL-----DPDTSYVDSCDVNP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ + K++S++ I +Y ADS + VV AASI AKV+RD A++
Sbjct: 112 KRFGKEISKLSDNHKI-------KSY--------HHADSRFVVVSAASIIAKVTRDRAIE 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ GSGYP D T KF++ P VR SW KIL
Sbjct: 157 KLR-------KTYDLGSGYPSDSKTVKFVTRYYKTSKSLPTFVRKSWKPVQKIL 203
>gi|390937865|ref|YP_006401603.1| RNase HII [Desulfurococcus fermentans DSM 16532]
gi|390190972|gb|AFL66028.1| RNase HII [Desulfurococcus fermentans DSM 16532]
Length = 255
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 27/228 (11%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAGRGP +G MV E L+ ++G DSK L KR IL+++ +
Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSTFESLV-SIGLRDSKLLEPLKRLIILNNMLSLD-- 65
Query: 103 LGWMVEIISPNVICNSMLRRQKYSL--NEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ + +SP I S + +Y++ + + + ++R+ AGV +Y+D V
Sbjct: 66 IDIVATYVSPIHIDRSNMNMLEYTVICGILKYLSYSHILRQHQDAGV---RIYIDEV--- 119
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ Y K+ E L + + V I S+AD+ YP V AAS+ AK+ RDS +K
Sbjct: 120 KGYNGKIGECARGLY-----RGN-----VEIFIESRADAKYPAVSAASVVAKILRDSNIK 169
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
+ +Q+ GSGYP DPV++++L+ P +R SW
Sbjct: 170 A------LQVIAGETGSGYPSDPVSRRWLANMYRDDGEPPVYIRRSWG 211
>gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
Length = 203
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 111/242 (45%), Gaps = 42/242 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGPV+GPMV NE+ L+ LG DSK L+ K R+ + I K
Sbjct: 3 VAGIDEAGRGPVVGPMVLAIVA----GNEKALRALGVRDSKELSRKARERLYPLILKSAE 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP-P 160
+ ++V + P+VI + LN + + A L+R + A V YVD+ P P
Sbjct: 59 CVNYVV--LEPHVIDEWA---ASHKLNLLEAEEAAKLMR-LCDADV----YYVDSPDPKP 108
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + + LS + ++ + +KA+ P V AASI AKV RD
Sbjct: 109 ERFSELLSRMSGRRVVAM-NKAERV----------------PQVAAASIVAKVVRD---- 147
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVL 280
+ ++ E +GSGYP D T L V + +R SW T ++ + +
Sbjct: 148 --RLVDMLRSEMGDFGSGYPSDSKTISALRSGKIAV----ECIRHSWGTLKRLKGDGQSM 201
Query: 281 VE 282
V+
Sbjct: 202 VQ 203
>gi|408406045|ref|YP_006864029.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366641|gb|AFU60371.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 225
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 112/248 (45%), Gaps = 52/248 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD-------DILD 94
V G+DEAGRG ++GP+V K++ LL +G DSKALT + R I D
Sbjct: 13 VGGVDEAGRGSIIGPLVVA-GVSIKESKVALLTEMGVRDSKALTPRARARLFGQIMKIAD 71
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN---VRE 151
S+C + ++P + +S+ R +LN + +V+AA +N E
Sbjct: 72 SVC---------IRKVNPVEVDDSVSLR---ALNRLEA--------RVMAAVINDIGADE 111
Query: 152 VYVDTVG-PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
VYVD P+ YK + + + + K S + AD T VV AASI
Sbjct: 112 VYVDCCDINPDRYKDYIGQH-----LKCSPKVHSIH---------HADVTNVVVSAASII 157
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
AK++RD +K I+ + GSGYP D T +F+ + P+ R SW
Sbjct: 158 AKITRDEEIKR------IRSKYRGIGSGYPSDDRTMRFIRRYVAKNGSAPEFARKSWKPL 211
Query: 271 SKILKEKA 278
+L++ A
Sbjct: 212 RLLLEQTA 219
>gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE]
gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE]
Length = 217
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 37/239 (15%)
Query: 42 VLGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSIC 97
+ GIDEAGRGPV+GPMV G + K + +K++G DSK LT KKR++ + +C
Sbjct: 2 IAGIDEAGRGPVIGPMVVCGVSVSEKKLRK--IKSMGLKDSKLLTPKKREEFAVKIKDVC 59
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ + + ++ P I + + +LNE+ + +++ + A YVD
Sbjct: 60 E------YELVVVGPERIDSRA--NDELNLNELEVECFSNILKALRPA-----TAYVDAC 106
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+E F I V D V+ AD YPVV AASI AKV RD+
Sbjct: 107 DVN-------AERFG---INVKKGLDFEVEVIS---RHNADRDYPVVSAASILAKVHRDA 153
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+K G + GSGY D VT +FL P R SW T S I+ +
Sbjct: 154 LIKEICDSIGENV-----GSGYSHDQVTIEFLKGYYKKNKCMPPFARKSWKTTSAIISD 207
>gi|345005256|ref|YP_004808109.1| ribonuclease HII [halophilic archaeon DL31]
gi|344320882|gb|AEN05736.1| ribonuclease HII [halophilic archaeon DL31]
Length = 217
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 28/233 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G DEAG+GP LGPMV G + + +L L DSK L+ +R+++ ++ + +
Sbjct: 2 LVGADEAGKGPALGPMVAGAV---RADRADLPSGLD--DSKKLSPARREELATAL-RAHP 55
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ V + P I + + +N + A + V G ++ DT E
Sbjct: 56 DIRVAVATVPPERIDD-----PETDMNSLGVAAQAEAVTAVAEPGDDLFADAADTDA--E 108
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ ++L + T+ S V AD +YPVV AAS+ AKV RD +
Sbjct: 109 RFGRRLRD-------TILDGDGSALEVTA---EHGADESYPVVSAASVVAKVERDRLMAE 158
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ G A GSGYP DP T+ FL + P R SW+T +L
Sbjct: 159 IDEEHG-----RAIGSGYPSDPTTRSFLEGYVAEYGELPACARASWATCEDVL 206
>gi|448733907|ref|ZP_21716147.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
gi|445801893|gb|EMA52208.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
Length = 223
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 40/249 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAGRGPVLG + C + + L G DSK L+ +R+ + D + + +
Sbjct: 5 FGVDEAGRGPVLGSLFVA---CVRADPAVL--PAGIDDSKRLSPARRETLADEL-RADDR 58
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG---- 158
+ ++P+ I LN ++ +AA I V + G + + G
Sbjct: 59 IAVATREVTPSAIDA-----PDTDLNALTIEAAGATIDSVASIGADAKATADGLAGVVDA 113
Query: 159 ---PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
E + +++ E A+ AD V AD + +VGAAS+ AKV+R
Sbjct: 114 CDTDTERFGRRVHE---------AATAD-----VEITAEHGADEEHALVGAASVVAKVAR 159
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL- 274
D+ + + E+ GSGYP DP T++FL+E + P R SW T+ + L
Sbjct: 160 DAHIAD------LADEHGPIGSGYPSDPTTREFLAEYVREHGDLPPFARRSWKTSREALA 213
Query: 275 -KEKAVLVE 282
E++ L E
Sbjct: 214 AAEQSALAE 222
>gi|448299120|ref|ZP_21489133.1| ribonuclease HII [Natronorubrum tibetense GA33]
gi|445588654|gb|ELY42896.1| ribonuclease HII [Natronorubrum tibetense GA33]
Length = 231
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 20/237 (8%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPV G M + + +L N G ADSK L ++R+++ +I +++
Sbjct: 3 FGVDEAGKGPVFGSMFAASVAL---EDPTILPN-GIADSKRLAPERREELAATIREDDRI 58
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ EI + + SL +H AIG + G++ + D++
Sbjct: 59 RVGVAEITTARI---DDPETDMNSLAVAAHAEAIGSALE----GLDDNALESDSIAGLCD 111
Query: 163 YKKKLSEIFPELIITVASKADS-TYPVVGAAIASK--ADSTYPVVGAASICAKVSRDSAL 219
++ F + S S P I ++ AD +VGAASI AKV RD+ +
Sbjct: 112 ACDTDADRFARRVSQACSAVSSLEAPTDALEIDARHGADDDSKIVGAASIVAKVERDAHV 171
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ I E GSGYP DP T++FL +D P R SWST +L E
Sbjct: 172 AA------IAEEYGPVGSGYPSDPNTREFLETYVDEHATLPPFARESWSTCEDLLAE 222
>gi|429191022|ref|YP_007176700.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|448327412|ref|ZP_21516740.1| ribonuclease HII [Natronobacterium gregoryi SP2]
gi|429135240|gb|AFZ72251.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|445608510|gb|ELY62349.1| ribonuclease HII [Natronobacterium gregoryi SP2]
Length = 221
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 98/232 (42%), Gaps = 24/232 (10%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M Y P E G ADSK L + R+ + ++ +E+
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVYVP----EAAALPDGIADSKRLAPEHREKLAATL-REDDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
G V IS I +N ++ +A I A + + D+V
Sbjct: 58 FGIGVAEISTGRI-----DEPTTDMNSLTVEAHA----NAIEAALEDCALENDSVDGLCD 108
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+ F + AS + + AD PVVGAASI AKV RD+ + +
Sbjct: 109 ACDTDANRFARRVADAASLSRD----LDLEARHGADDDSPVVGAASIVAKVERDAHVAA- 163
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
I E GSGYP DP T++FL +D P R SWST K L
Sbjct: 164 -----ISEEYGDVGSGYPSDPTTREFLESYVDDHGELPPFARSSWSTCEKAL 210
>gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A]
gi|189043576|sp|A0RV25.1|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A]
Length = 205
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 35/233 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAGRG ++GP+V ++ E LK++G DSK LT K R+ + I N
Sbjct: 3 VCGVDEAGRGSLVGPLVIAGVAIKRNRMRE-LKSMGVRDSKKLTRKARESLYPEIV--NM 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ + + P V+ S+ R + LN++ A + R + G YVD+ P
Sbjct: 60 ADSYHISRVPPGVVDRSVGR---HMLNDLE---ARYMARVITRLGHGT--TYVDSCDVNP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ ++SE+ + + +Y +AD + +V AASI AKV+RD +++
Sbjct: 112 RRFGGRVSEM--------SGRTVRSY--------HRADDRFVIVSAASILAKVARDRSIE 155
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+++ GSGYP D T F+ + P VR SW A I
Sbjct: 156 RLR-------KSHDVGSGYPSDRRTVGFVRGYYNKNGAMPPFVRRSWRPARLI 201
>gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551]
gi|448287053|ref|ZP_21478269.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551]
gi|445572799|gb|ELY27329.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
Length = 224
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 103/245 (42%), Gaps = 39/245 (15%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI-CK 98
P +G DEAG+GPVLGPMV + L + G DSK LT +R++I ++ +
Sbjct: 6 PVRIGSDEAGKGPVLGPMVAAAVR----APADALPD-GIDDSKRLTSAQREEIDQTLRGR 60
Query: 99 ENAWLGWM----VEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
++ +G V I P NS+ + A EV
Sbjct: 61 DDVTVGVATIDPVRIDDPTTDMNSLTVAAHVAAVAAVAQDA--------------DEVVT 106
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
D ES F + T + VV +AD TYP VGAAS+ AKV
Sbjct: 107 DAGDVDESR-------FGRRVRTGVGDEGTDVTVVSE---HRADETYPHVGAASVVAKVR 156
Query: 215 RDSALKSWTFQEGIQIEN-NAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD+ +++ G + E+ GSGYP DP T++FL + P R SW+T +
Sbjct: 157 RDTLMETI----GERYEDYGPVGSGYPSDPTTREFLRTYVSETGELPDCARASWATCDDV 212
Query: 274 LKEKA 278
L A
Sbjct: 213 LNAAA 217
>gi|448607693|ref|ZP_21659646.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
gi|445737630|gb|ELZ89162.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
Length = 215
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 102/238 (42%), Gaps = 42/238 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV D + G ADSK LT ++R ++ + +E
Sbjct: 3 VGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLTPERRAELAAKL-RERDD 56
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V + P I N + R + A L V AG +V E
Sbjct: 57 VEVGVAFVEPETIDDPETDMNLLTVRAQVEAAAAVAVDADEL---VCDAG-DVSE----- 107
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++ E E ++V A +AD + +VGAASI AKV RD
Sbjct: 108 ----SRFGRRVREGVAEAGVSVEVHAQH-----------RADDEHAIVGAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E + E GSGYP D T+KFL E + P R SWST + ++
Sbjct: 153 RRV------EALAAEYGEVGSGYPSDGTTRKFLREYVREHGILPDCARKSWSTCADLM 204
>gi|448599595|ref|ZP_21655398.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
gi|445736268|gb|ELZ87812.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
Length = 215
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 103/238 (43%), Gaps = 42/238 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV D + G ADSK L ++R+++ + +E
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAEL-RERDD 56
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V + P I N + R + A L V AG +V E
Sbjct: 57 ISVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAADADEL---VCDAG-DVSE----- 107
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++ E E ++V +A +AD + +VGAASI AKV RD
Sbjct: 108 ----SRFGRRVREGLAEAGVSVEVRAQH-----------RADDEHAIVGAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I E GSGYP D T++FL E + P R SWST + ++
Sbjct: 153 RRV------EAIADEYGEVGSGYPSDGTTREFLREYVRDHGILPDCARKSWSTCADLV 204
>gi|448360110|ref|ZP_21548753.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
gi|445640487|gb|ELY93575.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
Length = 221
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 38/239 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GP LG M + + E +L + G DSK LT +RD++ ++ +E+
Sbjct: 3 IGVDEAGKGPALGSMFAAAVHVER---ETVLPD-GITDSKQLTPARRDELATTL-REDDR 57
Query: 103 LG------WMVEIISPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+G + +I P NS+ + ++ V+ DA + I + + D
Sbjct: 58 IGVGVAEITIAQIDDPETDMNSLSVLAHAEAIEAVACDAG---LETPITGHCDACDTDAD 114
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
++ + E IT AD DS P+VGAASI AKV R
Sbjct: 115 RFA-----RRVADQCGLECTITAEHGADD-------------DS--PIVGAASIIAKVER 154
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
D+ ++S + + GSGYP DP T+ FL +D P R SWST +L
Sbjct: 155 DAHVESVS---AAFPDCGPVGSGYPSDPNTRAFLESYVDAHGKLPSCARESWSTCEDVL 210
>gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
Length = 255
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 27/228 (11%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAGRGP +G MV E L+ ++G DSK L KR IL+++ +
Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSAFESLV-SIGLRDSKLLEPLKRLMILNNMLSLD-- 65
Query: 103 LGWMVEIISPNVICNSMLRRQKYSL--NEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ + +SP I S + +Y++ + + + + ++R+ GV +Y+D V
Sbjct: 66 IDIVATYVSPIHIDRSNMNMLEYTVICSILKYLSYSHILRQHQGTGV---RIYIDEV--- 119
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ Y K+ E L + + V I S+AD+ YP V AAS+ AK+ RDS +K
Sbjct: 120 KGYNDKIGECARGLY-----RGN-----VEIFIESRADAKYPAVSAASVVAKILRDSNIK 169
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
+ +Q+ GSGYP DPV++++L+ P +R SW
Sbjct: 170 A------LQVIAGETGSGYPSDPVSRRWLANMYRDDGEPPVYIRKSWG 211
>gi|448620244|ref|ZP_21667592.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
gi|445757032|gb|EMA08388.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
Length = 215
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 102/238 (42%), Gaps = 42/238 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV D E G ADSK L+ ++R ++ + +E
Sbjct: 3 VGVDEAGKGPVLGPMVAAAVRADPDALPE-----GIADSKRLSPERRAELAAKL-RERDD 56
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V + P I N + R + A L V AG +V E
Sbjct: 57 VEVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADEL---VCDAG-DVSE----- 107
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++ E E ++V A +AD + +VGAASI AKV RD
Sbjct: 108 ----SRFGRRVREGVAEAGVSVEVHAQH-----------RADDEHAIVGAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E + E GSGYP D T+KFL E + P R SWST + ++
Sbjct: 153 RRV------EALAAEYGEVGSGYPSDGTTRKFLREYVREHGILPDCARKSWSTCADLM 204
>gi|433592396|ref|YP_007281892.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|448333742|ref|ZP_21522931.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
gi|433307176|gb|AGB32988.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|445621621|gb|ELY75092.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
Length = 223
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 34/238 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M +C ++ L + G DSK L+ ++R+++ ++ +++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHCEAPDD---LPD-GIRDSKRLSPERREELAATL-RDDDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY------VDT 156
+ V I+P I + SL +H AI A + E + DT
Sbjct: 58 IAIGVAEITPARIDDP--ETDMNSLAVAAHAEAIEGAFADRARDASADEQFSGLCDACDT 115
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ + +++++ P +++ ++ AD +VGAAS+ AKV RD
Sbjct: 116 DA--DRFARRVADACPLEAVSIDAR-------------HGADDESTLVGAASVVAKVERD 160
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + + + E GSGYPGD T++FL++ +D P R SWST +L
Sbjct: 161 AHVAA------LADEYGEIGSGYPGDSTTREFLADYVDEHGDLPPFARASWSTCEDVL 212
>gi|448668246|ref|ZP_21686377.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
gi|445768328|gb|EMA19413.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
Length = 211
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + E+L + G DSK + ++R+ + I +E+A
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRA----DPEVLPD-GVGDSKGIRPERRERLAGEI-RESAD 56
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ EI + + +N ++ DA + A V R+ TV ++
Sbjct: 57 AVGVAEIPVERIDADGT------DMNTLTVDA------QAEALSVVARDGLPGTVDAGDT 104
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+ AD+ V AD T P+VGAASI AKV+RD + +
Sbjct: 105 DAARFGRRV----------ADAVNADVTVTAEHGADETDPLVGAASIIAKVARDEHVAAL 154
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ G GSGYP DP T+ FL++ +D P R SWST +L
Sbjct: 155 AEEYGD------VGSGYPSDPTTRAFLADYVDRHGELPACARRSWSTCDDVL 200
>gi|448547399|ref|ZP_21626877.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
gi|445716410|gb|ELZ68154.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
Length = 215
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 32/233 (13%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV D + G ADSK L+ ++R+++ + +E
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGEPDALPD-----GIADSKRLSPERREELATEL-RERDD 56
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ V + P I + + +N ++ + A + E+ D ES
Sbjct: 57 ISVGVAFVEPATIDDP-----ETDMNLLT---VRAQVDAAAAVAADADELVCDAGDVSES 108
Query: 163 -YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ +++ E E + V +A +AD + +VGAASI AKV RD +
Sbjct: 109 RFGRRVREGLAEAGVPVEVRAQH-----------RADDEHAIVGAASIVAKVERDRRV-- 155
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
E I E GSGYP D T++FL E + P R SWST + ++
Sbjct: 156 ----EAIADEYGEVGSGYPSDGTTREFLREYVREHGILPDCARKSWSTCADLM 204
>gi|448397461|ref|ZP_21569494.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
gi|445672560|gb|ELZ25131.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
Length = 223
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 30/238 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M Y + + L + G DSK LT ++R+++ ++ +++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVYL---EDTDGLPD-GIRDSKRLTSERREELAATL-RDDDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLN---EVSHDAAIGLIRKVIAA-GVNVREVYVDTVG 158
+ V I+P I + ++ E DA L R ++ V+ DT
Sbjct: 58 IAIGVAEITPARIDDPQTDMNSLAVTAHAEAIEDAVADLERSEDSSEPVSGLCDACDTDA 117
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
E + +++S+ + V ++ AD P+VGAASI AKV RD+
Sbjct: 118 --ERFARRVSDTCSLERLAVDAR-------------HGADDDSPLVGAASIIAKVERDAH 162
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + + E GSGYPGD T+ FL+ +D P R SWST L E
Sbjct: 163 IAT------LAAEYGPIGSGYPGDSTTRAFLTSYVDAHGELPPFARESWSTCEDALAE 214
>gi|448570098|ref|ZP_21639092.1| ribonuclease HII [Haloferax lucentense DSM 14919]
gi|445723399|gb|ELZ75041.1| ribonuclease HII [Haloferax lucentense DSM 14919]
Length = 215
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 103/237 (43%), Gaps = 40/237 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI--CKEN 100
+G+DEAG+GPVLGPMV D + G ADSK L ++R+++ + C +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRECDDI 57
Query: 101 AWLGWMVE---IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ VE I P N + R + A L V AG +V E
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAADVAADADEL---VCDAG-DVSE------ 107
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ +++ E E ++V +A +AD + +VGAASI AKV RD
Sbjct: 108 ---SRFGRRVREGLAEAGVSVEVRAQH-----------RADDEHAIVGAASIVAKVERDR 153
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I E GSGYP D T++FL E + P R SWST + ++
Sbjct: 154 RV------EAIADEYGEVGSGYPSDGTTREFLREYVRDHGILPDCARKSWSTCADLV 204
>gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
Length = 244
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 37/235 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK--EN 100
+G+DEAGRGP++G +V ++ E+L+ ++G DSK LT R + I K ++
Sbjct: 10 IGVDEAGRGPLIGDLVIAILIISRNKIEKLI-SIGVKDSKQLTRHTRLSLAKKILKLADS 68
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN---VREVYVDTV 157
A ++ ISP +I Y++N + + I L K+ + +N +Y+D +
Sbjct: 69 A----LIIYISPEII-------DSYNINRIIAEKII-LALKLFSPVINHYRTASIYIDEI 116
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
++Y +A+ + + + AD YPVV AASI AK RD
Sbjct: 117 KGYKNY-------------ILANLSKYINNIEEYVMEPNADQKYPVVSAASILAKTIRD- 162
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
K+ F + I GSGYP D VT +L + + P ++R +WST K
Sbjct: 163 --KNIDFLKKIY---GNLGSGYPSDRVTINWLIKTYNGEKEPPLIIRRTWSTLRK 212
>gi|448366041|ref|ZP_21554295.1| ribonuclease HII [Natrialba aegyptia DSM 13077]
gi|445654650|gb|ELZ07501.1| ribonuclease HII [Natrialba aegyptia DSM 13077]
Length = 241
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + D L + G ADSK L +RD++ D++ ++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHVETDA---ALPD-GIADSKRLAPARRDELADTLRADDRI 58
Query: 103 LGWMVEII-----SPNVICNSMLRRQKY-------SLNEVSHDAAIGLIRKVIAAGVNVR 150
+ EI P NS+ R + NE + + N
Sbjct: 59 GIGLAEITPAQIDDPETDMNSLTVRAHAQAIESLSTANETKDENKNKNENENENGNGNGN 118
Query: 151 EVYVDTVGPPESYKKKLSEIFPELII---TVASKADSTYPVVGAAIASKADSTYPVVGAA 207
E D + +E F + T+ + D+ + AD P+VGAA
Sbjct: 119 EFSADPLAGLCDACDTDAERFARRVTDACTLNLELDARH---------GADEDSPIVGAA 169
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
SI AKV+RD+ + E I E + GSGYP DP T++FL +D P + R SW
Sbjct: 170 SIVAKVARDAHV------ETIADEFGSVGSGYPSDPTTREFLERYVDEHGELPPVARTSW 223
Query: 268 STASKIL 274
+T +L
Sbjct: 224 ATCEDVL 230
>gi|352682597|ref|YP_004893121.1| Ribonuclease HII [Thermoproteus tenax Kra 1]
gi|350275396|emb|CCC82043.1| Ribonuclease HII [Thermoproteus tenax Kra 1]
Length = 196
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 107/236 (45%), Gaps = 48/236 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP++GPMV A DN E L++LG DSK LT ++R + ++ +
Sbjct: 3 VAGIDEAGRGPLVGPMV--VAIVAGDN--ERLRSLGVRDSKTLTPQRRKSLYSAVLQTAE 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV---YVDTVG 158
+ ++V I P VI + R+ LN + +A LI N+ E YVD
Sbjct: 59 CVNYIV--IEPAVIDQYVGSRK---LNLLEAEAMAQLI--------NLCEADAYYVDAPD 105
Query: 159 P-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P E + + LS +T KA+ P V AASI AKV RDS
Sbjct: 106 PVAERFGRALSAATGR-SVTALHKAERV----------------PAVAAASIVAKVVRDS 148
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E GSGYP D ++ L E + P+ +R +W T I
Sbjct: 149 ------LMELLRREMGEIGSGYPSD---RRTL-EAVRAGRVAPECLRRTWKTMRDI 194
>gi|374632053|ref|ZP_09704427.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
gi|373525883|gb|EHP70663.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
Length = 212
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 37/231 (16%)
Query: 43 LGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
LGIDEAGRG ++GPMV G K L+ +G DSK LT K+R+++ I +E+
Sbjct: 3 LGIDEAGRGCLIGPMVVAGVVLSEKGMGR--LRAVGVKDSKKLTRKRREELFHLILEESE 60
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ + + + + N +LNE+++ + ++R + A ++ V VD VG
Sbjct: 61 AVA-IAKALPDEIDTN--------NLNELTYRKVLEVMRALSAFPIDT--VTVDRVG--- 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
K E+ E I + + + Y AD + AASI AKV RD +
Sbjct: 107 ----KEVEVIEE-IYRLGLRPNVVY---------HADENFLEASAASIVAKVVRDRIVLE 152
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
Q G +GSGYP DP T+K++ P ++R +W K
Sbjct: 153 LREQYG------DFGSGYPSDPKTRKWVERLAKEGKPPPTIIRRTWKLLQK 197
>gi|448593311|ref|ZP_21652309.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
gi|445730219|gb|ELZ81809.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
Length = 215
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 105/238 (44%), Gaps = 42/238 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV A + + E L + G ADSK LT ++R+++ + +E
Sbjct: 3 IGVDEAGKGPVLGPMV---AAAVRADPETLPE--GIADSKRLTPERREELAAEL-RERDD 56
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V + P I N + R + A L V AG +V E
Sbjct: 57 ISVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAADADEL---VCDAG-DVSE----- 107
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++ + E +V A +AD + +VGAASI AKV RD
Sbjct: 108 ----SRFGRRVRDGVAEAGASVEVHAQ-----------HRADDEHAIVGAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I E GSGYP D T+ FL E + P R SWST + +L
Sbjct: 153 RRV------EAIADEYGEVGSGYPSDQTTRDFLREFVREHGILPDCARKSWSTCADLL 204
>gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449066967|ref|YP_007434049.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449069239|ref|YP_007436320.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
gi|109896186|sp|Q4JA60.1|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449035475|gb|AGE70901.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449037747|gb|AGE73172.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
Length = 212
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 52/245 (21%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNN-EELLKNLGCADSKALTEKKRDDILDSICKE 99
++GIDEAGRG ++GPMV A D+N + L +G DSK LT KKR+ + I +
Sbjct: 2 ILVGIDEAGRGSLIGPMV--VAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLFGVILEY 59
Query: 100 NAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+ + + EI S N LNE+++ A I +I + + N V VD
Sbjct: 60 SYAISLVKAYPEEIDSEN-------------LNEITYRAMIQIIHSM--SVYNPSIVTVD 104
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
VG + +++ II + S + + AD Y V AASI AKV R
Sbjct: 105 KVGNASAVERE--------IININS---------SPRVENNADVKYVEVSAASIIAKVVR 147
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSE--NIDPVFGFPQLVRFSWSTASKI 273
D+ + G +GSGYPGD T +++ + + P + P ++R SW KI
Sbjct: 148 DNIINELKKTYG------DFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW----KI 196
Query: 274 LKEKA 278
L++ A
Sbjct: 197 LQDIA 201
>gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1]
gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1]
Length = 205
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 102/236 (43%), Gaps = 43/236 (18%)
Query: 45 IDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLG 104
+DEAG+G VLGPMV C E L L DSK L K+R+ + + + ++
Sbjct: 1 MDEAGKGSVLGPMVVAAVGC---REIEDLATLPIRDSKVLRPKQREALYEILFRD---FS 54
Query: 105 WMVEIISPNVICNSMLRRQKYSLN----EVSHDAAIGLIRKVIAAGVNVREVYVDTVGP- 159
+ I I ++ R + S+N E+ +A + L YVD
Sbjct: 55 IAIVTIDAAGIDDA---RSRMSMNTCVAELHAEALMSL---------QPEYAYVDACDVN 102
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
E Y + ++E+ YP A AD+ + VVGAAS+ AKV+RD A+
Sbjct: 103 AERYGRTVAELL-------------DYPCEIVA-EHHADARHKVVGAASVVAKVTRDRAI 148
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ Q G A GSGYP DP T +FL I P R SW T + + +
Sbjct: 149 RELEQQYG------AIGSGYPSDPATIEFLRGYIRSHGSPPACARRSWKTVTNLCQ 198
>gi|448679235|ref|ZP_21690072.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
gi|445771333|gb|EMA22390.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
Length = 211
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + + + G DSK + ++R+ + + I +E+A
Sbjct: 3 FGVDEAGKGPVLGSM-----FAAAVRADPVTLPDGVGDSKDIKPERRERLAEEI-RESAD 56
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ E+ + + + +N ++ DA + V R+ TV ++
Sbjct: 57 AVGVAEVPVERIDAD------ETDMNTLTVDAQATALSTV------ARDNLSGTVDAGDT 104
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+ VA D+ V AD T VVGAASI AKV+RD+ +
Sbjct: 105 DATRFGR-------RVADAVDADVTVTA---EHGADETDTVVGAASIIAKVARDAHVAE- 153
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVE 282
+ +E GSGYP DP T+ FL++ +D P R SWST +L +
Sbjct: 154 -----LAVEYGDVGSGYPSDPTTRAFLADYVDRHGELPACARRSWSTCDDVLAAASQSTL 208
Query: 283 GD 284
GD
Sbjct: 209 GD 210
>gi|448437393|ref|ZP_21587416.1| ribonuclease HII [Halorubrum tebenquichense DSM 14210]
gi|445681120|gb|ELZ33559.1| ribonuclease HII [Halorubrum tebenquichense DSM 14210]
Length = 238
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 37/247 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYC-----PKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
LG+DEAG+GP LGPMV P D + DSK + +R+ + ++
Sbjct: 3 LGVDEAGKGPALGPMVAAAVIAAPSSLPADVD----------DSKRIAPDRREAMAAALD 52
Query: 98 KENAWLGWMV-----EIISPNVICNSM-LRRQKYSLNEVSHDAAIGLIR--KVIAAGVNV 149
+ + EI P+ N++ +R Q ++ D GL +V+A +
Sbjct: 53 DDADVAVGVARVEPSEIDRPDTDMNTLTVRGQARAVRAALADRPAGLAEPVRVVADAGDT 112
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPV--VGAAIASKADSTYPVVGAA 207
E E + ++L E + +S PV V A AD+ P+VGAA
Sbjct: 113 SE---------ERFARRLRESVAAGDDGDGERPESGDPVPAVDVTAAHGADADDPLVGAA 163
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
S+ AKV+RD+ + + + E + GSGYP DP T+ F++ + P R SW
Sbjct: 164 SVVAKVTRDAEMATV---DAAYPEYDGVGSGYPSDPATRSFIAAYVGDHGTLPDCARESW 220
Query: 268 STASKIL 274
+T L
Sbjct: 221 ATCEDAL 227
>gi|448577303|ref|ZP_21642933.1| ribonuclease HII [Haloferax larsenii JCM 13917]
gi|445727948|gb|ELZ79557.1| ribonuclease HII [Haloferax larsenii JCM 13917]
Length = 215
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 104/238 (43%), Gaps = 42/238 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV A + + E L + G ADSK LT +R+++ + +E
Sbjct: 3 IGVDEAGKGPVLGPMV---AAAVRADPETLPE--GIADSKRLTPARREELAAEL-RERDD 56
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V + P I N + R + A L V AG +V E
Sbjct: 57 ISVGVAFVEPETIDDPETDMNLLTVRAQVEAAAAVAVDADEL---VCDAG-DVSE----- 107
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++ + E +V A +AD + +VGAASI AKV RD
Sbjct: 108 ----SRFGRRVRDGVAEAGASVEVHAQ-----------HRADDEHAIVGAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I E GSGYP D T+ FL E + P R SWST + +L
Sbjct: 153 RRV------EAIAEEYGEVGSGYPSDQTTRDFLREFVREHGILPDCARKSWSTCADLL 204
>gi|433637107|ref|YP_007282867.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
gi|433288911|gb|AGB14734.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
Length = 232
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 24/239 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI-CKEN 100
V G+DEAG+GP +GPM+ A + + L + G ADSK L +R+D+ + ++
Sbjct: 2 VFGVDEAGKGPAIGPMI---AVAVRVADRSHLPD-GMADSKDLAPDRREDLAARLRAADD 57
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+G I + + + +N + + A + + +D G
Sbjct: 58 VAVGVCA-------ITSDRIDDPETDMN------GLAVAAHAGAIEAALADAGLDGAGTD 104
Query: 161 ESYKKKLSEIFPELIITVASK-ADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + + A + D+ P + A AD+ P+VGAASI AKV RD+ +
Sbjct: 105 DDPPAGICDACDTDADRFARRVTDACSPPIDVAAKHGADADDPLVGAASIVAKVERDARM 164
Query: 220 K--SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ T+ + + GSGYP DP T+ FL ++D P R SW+T +L +
Sbjct: 165 ADIAATYADAGYGDP---GSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 220
>gi|336255000|ref|YP_004598107.1| ribonuclease HII [Halopiger xanaduensis SH-6]
gi|335338989|gb|AEH38228.1| ribonuclease HII [Halopiger xanaduensis SH-6]
Length = 233
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 24/240 (10%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + A +D + + L G ADSK L +R+++ +I + +
Sbjct: 3 FGVDEAGKGPVLGSM-FAAAVHLEDPSLDALPE-GIADSKRLAPARREELAATI-RADDR 59
Query: 103 LGWMVEIISPNVICN-----SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+G V I+P +I + + L Q ++ + + I + + D
Sbjct: 60 IGVGVAEITPELIDDPETDMNSLTVQAHAEAIAAAVPDVAAPADKITGLCDACDTDAD-- 117
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPV-VGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++++ + + ++ P+ + A + DST +VGAASI AKV RD
Sbjct: 118 ----RFARRVTDACA-AALGLEHDCETDAPLEIDARHGADDDST--LVGAASIVAKVERD 170
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + E I E GSGYP DP T+ FL +D P R SWST +L E
Sbjct: 171 AHI------EAIGEEYGNVGSGYPSDPTTRDFLESYVDEHGELPPFARESWSTCEDVLAE 224
>gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1]
gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1]
Length = 244
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 47/267 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRGP++G +V +D + L+ ++G DSK LT R + I K
Sbjct: 10 IGIDEAGRGPLIGDLVIAVLMINRDKIKNLI-SIGVRDSKQLTRHTRLIMAKKILK---- 64
Query: 103 LGWMVEII--SPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV--IAAGVNVREVYVDTVG 158
L V II SP +I Y++N++ + I +R + I +Y+D +
Sbjct: 65 LADNVSIIYISPEMI-------DSYNINKIIAEKIIIALRMLSQIINHYRTVSIYIDEIK 117
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
++Y I+T SK + + + AD YPVV AASI AK RD
Sbjct: 118 GYKNY-----------ILTNLSKYINN--IEEYVMEPNADQKYPVVSAASILAKTIRD-- 162
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
K+ F + I +GSGYP D +T K+L++ + P ++R +WST K +
Sbjct: 163 -KNIDFLKKIY---GNFGSGYPSDKITIKWLTKTYNEENEPPLIIRRTWSTLRKYAPK-- 216
Query: 279 VLVEGDEIDDEEEEGENKKTRSIRNFF 305
+NKKT+SI N+
Sbjct: 217 ----------WYSNLKNKKTQSILNYL 233
>gi|448689619|ref|ZP_21695203.1| ribonuclease HII [Haloarcula japonica DSM 6131]
gi|445777890|gb|EMA28850.1| ribonuclease HII [Haloarcula japonica DSM 6131]
Length = 211
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 105/247 (42%), Gaps = 44/247 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + L N G DSK + ++R+ + + I K
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVR----ADPAALPN-GVGDSKDIKPERRERLAEEIRKSADA 57
Query: 103 LGWM---VEIISPN-VICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+G VE I + N++ + Q +L+ V+ D GL V A +
Sbjct: 58 VGVAEIPVERIDADGTDMNTLTVDGQAEALSAVARD---GLSGTVDAGDTDAAR------ 108
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ +++++ + A AD T P+VGAASI AKV+RD
Sbjct: 109 -----FGRRVADAVDADVTVTAEHG--------------ADETDPLVGAASIIAKVARDV 149
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ + G GSGYP DP T+ FL++ +D P R SWST +L
Sbjct: 150 HVTELAEEYG------DVGSGYPSDPTTRTFLADYVDSHGELPACARRSWSTCDDVLAAA 203
Query: 278 AVLVEGD 284
+ GD
Sbjct: 204 SQATLGD 210
>gi|448730927|ref|ZP_21713230.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
gi|445792521|gb|EMA43122.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
Length = 223
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 40/249 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAGRGPVLG + C + + L G DSK L+ +R+ I + +++
Sbjct: 5 FGVDEAGRGPVLGSLFVA---CVRADPAAL--PAGIDDSKRLSPARRETIAGEL-RDDDR 58
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG---- 158
+ ++P S + LN ++ AA I V++ G + G
Sbjct: 59 ISIATREVTP-----SEIDAPDTDLNALTIAAAGAAIDGVVSVGADAEAAADRMAGVIDA 113
Query: 159 ---PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
E + +++ E A+ AD V AD Y +VGAAS+ AKV+R
Sbjct: 114 CDTDAERFGRRVRE---------ATTAD-----VAITAEHGADEEYDLVGAASVVAKVAR 159
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL- 274
D+ + + E+ + GSGYP DP T+ FL+ + P R SW T+ + L
Sbjct: 160 DAHIAD------LADEHGSVGSGYPSDPTTRDFLARYVHEHGDLPPFARRSWKTSREALA 213
Query: 275 -KEKAVLVE 282
E++ L E
Sbjct: 214 AAEQSALAE 222
>gi|448725585|ref|ZP_21708035.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
gi|445798039|gb|EMA48468.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
Length = 209
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGPVLG + C + L G DSK L +R + L + + +
Sbjct: 1 MFGVDEAGRGPVLGSLFVA---CVSADATALPD--GTDDSKRLAPARR-EALAAELRADE 54
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ V ++P I + LN ++ A I + + G + DT E
Sbjct: 55 RVTIAVSEVTPTEIDDGR-------LNGLTVAAMADAIDRAVPTGESGIIDACDT--DAE 105
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ +++ +A++ V AA AD ++ VGAASI AKV+RD+ +
Sbjct: 106 RFGRRV-------------RAETATDVELAA-EHGADESHEHVGAASIVAKVARDAHVAD 151
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ E+ A GSGYPGD T++FL E + G P R SW T+ +L+
Sbjct: 152 ------LAAEHGAIGSGYPGDGTTREFLREYVREHGGLPPFARASWKTSRDVLE 199
>gi|448327673|ref|ZP_21516995.1| ribonuclease HII [Natrinema versiforme JCM 10478]
gi|445617302|gb|ELY70900.1| ribonuclease HII [Natrinema versiforme JCM 10478]
Length = 223
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M +C + +L + G DSK L+ ++R+++ ++ + +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC---EDSAVLPD-GIRDSKRLSPERREELAATL-RADDR 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAI-GLIRKVIAAGVNVREV-----YVDT 156
+ V I P I +S SL +H AI G + + G + DT
Sbjct: 58 IAVGVAEIPPTRIDDS--ETDMNSLAVAAHAEAIEGAVADLERDGTATEPISGLCDACDT 115
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ + +++++ + V ++ AD +VGAASI AKV RD
Sbjct: 116 DA--DRFARRVADACSLERLAVDAR-------------HGADDDSLLVGAASIIAKVERD 160
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + ++ + G GSGYPGD T++FL+ +D P R SWST L +
Sbjct: 161 AHMAAFADEYG------PVGSGYPGDSTTREFLASYVDEHRELPPFARASWSTCEDALAD 214
>gi|389860356|ref|YP_006362595.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
gi|388525259|gb|AFK50457.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
Length = 231
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 34/237 (14%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V+GIDEAGRGP++G MV T + L+ LG DSK L+ R ++ E
Sbjct: 4 LVIGIDEAGRGPLIGDMVV-TGVAVSSSVISRLEQLGVRDSKTLSPGARSKARAAVLSEV 62
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAA---IGLIRKVIAAGVNVREVYVDTV 157
V +S V + +LN + +AA + L+R++ G V E+YVD +
Sbjct: 63 P-----VSFVSIYVHAAEI---DSKNLNTATLEAAKRVLLLVRELAWRGGEV-EIYVDEI 113
Query: 158 GPPESYKKKLS-EIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
ES ++ S E++ + ++ + + ADS YP V ASI AK RD
Sbjct: 114 KGAESKLRRFSMELYGDKLVVFVMEPE-------------ADSKYPAVSLASIIAKTLRD 160
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
++ Q G ++ +GSGY DP T K+++E V P +VR W ++
Sbjct: 161 ESI-----QPG-RVLFGDYGSGYSADPKTVKWVTE-YSKVSPPPLIVRRKWRNLERL 210
>gi|389847511|ref|YP_006349750.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|448617289|ref|ZP_21665944.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|388244817|gb|AFK19763.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|445748638|gb|EMA00085.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
Length = 215
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 101/238 (42%), Gaps = 42/238 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G+DEAG+GPVLGPMV + E L + G ADSK LT +R+++ + +E
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRA----DPEALPD-GIADSKRLTPVRREELAAKL-RERDD 56
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V I P I N + R + L V AG +V E
Sbjct: 57 IAVGVAFIEPATIDDPETDMNLLTVRAQVEAAAAVAADDDEL---VCDAG-DVSE----- 107
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++ + E +V A +AD + +VGAASI AKV RD
Sbjct: 108 ----SRFGRRVRDGVAEAGASVEVHAQ-----------HRADDEHAIVGAASIVAKVERD 152
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + I E GSGYP D T+ FL E + P R SWST + +L
Sbjct: 153 RRVAA------IADEYGEVGSGYPSDQTTRDFLREFVREHGILPDCARKSWSTCADLL 204
>gi|440493662|gb|ELQ76104.1| Ribonuclease HI [Trachipleistophora hominis]
Length = 414
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 61/215 (28%)
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L K+R+ I + I ++++ W + P I M RR +LN++S A I ++
Sbjct: 209 DSKQLLPKQRESIYEQIITTHSYV-WYA--LHPQYISTEMDRR---NLNDISISAVIHIL 262
Query: 140 RKVI--------------------------AAGVNVREVYVDTVGPPESYKKKLSEIFPE 173
++ A + +VYVD +G Y+ L + FP
Sbjct: 263 TTILNALDQPNSNTNQPNSNTKPSRKDNQTRAAHTITKVYVDALGSTNKYEHILRQHFPH 322
Query: 174 LIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENN 233
+ V KADSTY VG ASI AKV RD L+ ++ Q
Sbjct: 323 IPFVVEYKADSTY---------------RCVGGASIVAKVVRDDLLRRFSVQ-------- 359
Query: 234 AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
GSGYP D T +LS N + ++VRF W+
Sbjct: 360 -CGSGYPSDWRTVGWLSTNRE-----SEMVRFKWA 388
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 3 EIHTASNVTEVESCI---RSNDN---SRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGP 56
+ HTA++ + I R++DN ++N++ ++ C V+GIDEAGRGPVLG
Sbjct: 22 KTHTATDTRVIGDKIFTPRADDNPSVNKNILCANV---KCTGTRIVIGIDEAGRGPVLGY 78
Query: 57 MVYGTAYCPKDN 68
+VY +D+
Sbjct: 79 LVYAALLVNEDD 90
>gi|448308426|ref|ZP_21498303.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
gi|445593714|gb|ELY47883.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
Length = 227
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 38/244 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + + L + G ADSK LT +R+++ I +++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVFL---EDRTALPD-GIADSKRLTPARREELATLIREDDEI 58
Query: 103 LGWMVEIIS-----PNVICNSMLRRQKY-----SLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ EI + P N++ +L+ + D+ GL ++ + +
Sbjct: 59 AVGVAEITTTRIDDPETDMNALAVTAHAEAIDEALSGLCDDSVSGLCDDSVSGLCDACDT 118
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
D + +++++ +++S D + A + DST +VGAASI AK
Sbjct: 119 DAD------RFARRVADA-----CSISSGLD-----IDARHGADDDST--LVGAASIIAK 160
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
V RD+ + + + G GSGYP DP T+ FL +D P R SWST +
Sbjct: 161 VERDAHVAALADEYG------PVGSGYPSDPTTQTFLESYVDEHGDLPPCARASWSTCER 214
Query: 273 ILKE 276
L E
Sbjct: 215 ALAE 218
>gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
gi|189043570|sp|A8MAH5.1|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
Length = 209
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 108/235 (45%), Gaps = 38/235 (16%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV A N+E + +G DSK LT R + I + +
Sbjct: 10 GIDEAGRGPVIGPMV--IAIVGWSNSEA--EGIGVKDSKQLTPSGRSRLYKLIVSKAPCV 65
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP-PES 162
+ I+ P+ I + R LNE+ AI + ++I A V VYVD+ P P
Sbjct: 66 RHV--IVEPSEIDYYVNRGL---LNELE---AIKM-SELIKACSGVTRVYVDSPDPNPSR 116
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
++ ++ ELI+ + AD + P+V AASI AKV RD+ +
Sbjct: 117 FRGFINVKDVELIVL-----------------NHADESIPLVSAASIVAKVIRDTIISRL 159
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
G +GSGYP DP T L I+ P +VR SW T ++ +
Sbjct: 160 KETYG------DFGSGYPSDPRTISALRRWINN-GTLPPIVRRSWRTIKRMTNSR 207
>gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum]
Length = 665
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 42/251 (16%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDE+G+G VLGP+V + ++ LL+ G DSKALT +R++ L SI E A +
Sbjct: 256 GIDESGKGSVLGPLVVAIVVIDQPTSQ-LLRATGVKDSKALTSAQREN-LYSIITEKA-I 312
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
+ +I S + I RR+ +LN++ +G+ ++I +++ Y +
Sbjct: 313 YYKTKIFSASDIDQ---RRKVQTLNQIE----MGIFMELIDG---LKQYYYENASSEHLA 362
Query: 164 KKKLSEIF---------PELIITV------ASKADSTYPVVG--AAIAS-----KADSTY 201
+ +S+ P ITV ++ +YP+ A A+ KAD TY
Sbjct: 363 QVMMSDDTDGDHADDSKPHHRITVEIDSIESNSQKFSYPLRQRYAGFANIVCEIKADMTY 422
Query: 202 PVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDP-VFGFP 260
AASI AKV+RD +++ Q G I G GYP D T F+ F P
Sbjct: 423 TSTAAASIVAKVTRDKYIENLQSQVGEPI-----GCGYPSDETTLSFIDRFYRANAFDHP 477
Query: 261 QLVRFSWSTAS 271
+ VR SW T S
Sbjct: 478 E-VRQSWKTIS 487
>gi|448363470|ref|ZP_21552070.1| ribonuclease HII [Natrialba asiatica DSM 12278]
gi|445646283|gb|ELY99272.1| ribonuclease HII [Natrialba asiatica DSM 12278]
Length = 237
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 103/249 (41%), Gaps = 42/249 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + D G ADSK LT +RD++ D++ ++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHVETD----AALPEGIADSKRLTPARRDELADTLRADDRI 58
Query: 103 LGWMVEII-----SPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ EI P NS+ +R ++ +S K N D
Sbjct: 59 GIGLAEITPAQIDDPETDMNSLTVRAHAQAIESLSTANETKDENKNKNENENENGNEFDA 118
Query: 157 ---VG-------PPESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKADSTYPVVG 205
G E + +++++ EL + AD P+ VG
Sbjct: 119 DPLTGLCDACDTDAERFARRVTDACTLELELDARHGADEDSPI---------------VG 163
Query: 206 AASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRF 265
AASI AKV+RD+ + E I E + GSGYP DP T++FL +D P + R
Sbjct: 164 AASIVAKVARDAHV------ETIADEFGSVGSGYPSDPTTREFLERYVDEHGELPPVART 217
Query: 266 SWSTASKIL 274
SW+T +L
Sbjct: 218 SWATCEDVL 226
>gi|448304708|ref|ZP_21494644.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
gi|445590089|gb|ELY44310.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
Length = 219
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + + +L + G ADSK LT +R+++ I + +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVFL---EDRTVLPD-GIADSKRLTPARREELATLIREADEI 58
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ EI + + + + +N ++ A I +V++ VR+ D+V
Sbjct: 59 AVGVAEITT------TRIDDPETDMNSLAVTAHAEAIDEVLS---GVRD---DSVSGLCD 106
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
++ F + S + + A + DST +VGAASI AKV RD+ + +
Sbjct: 107 ACDTDADRFARRVADACSTPNDLE--IDARHGADDDST--LVGAASIIAKVERDAHVAAL 162
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ G GSGYP DP T+ FL +D P R SWST + L E
Sbjct: 163 ADEYG------PVGSGYPSDPTTQTFLESYVDEHGDLPPCARASWSTCERALAE 210
>gi|397775767|ref|YP_006543313.1| ribonuclease HII [Natrinema sp. J7-2]
gi|397684860|gb|AFO59237.1| ribonuclease HII [Natrinema sp. J7-2]
Length = 222
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + + + G DSK LT +R+++ ++ ++
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHL----EDPVALPDGIRDSKRLTPDRREELAATLRADDRI 58
Query: 103 LGWMVEII-----SPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ EI P NS+ + ++N+ AIG + G + V D
Sbjct: 59 AIGVAEITPVRIDDPGTDMNSLTVEAHATAIND-----AIGSFGSAASTG-DRPSVLCDA 112
Query: 157 VGP-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+ + +++++ P L + V ++ AD P+VGAASI AKV+R
Sbjct: 113 CDTDADRFARRVADACP-LEVDVDAR-------------HGADDDAPLVGAASIIAKVNR 158
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
D+ + + + G GSGYP D T++FL+ +D P R SWST L
Sbjct: 159 DAHVAALADEYG------PIGSGYPSDATTREFLASYVDEHGSLPPFARASWSTCEDAL 211
>gi|424819593|ref|ZP_18244670.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5]
gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 218
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+GIDEAGRGPV+GPM+ +D + E K++G DSK L+ KR +L+ K++
Sbjct: 2 ITIGIDEAGRGPVIGPMIIAGVGINEDISNE-FKSIGVKDSKLLS-IKRIYLLEREIKKS 59
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
++I S + ++ + K +LN + D+ VIA ++ +V +D+ P
Sbjct: 60 TQNYKTIKISSEEI--DNRFEKGK-NLNYLELDSM-----AVIANDLSGEKVIIDS---P 108
Query: 161 ESYKKKLSEIFPELI---ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
S KK+ E LI I +A + AD + V AASI AK R+
Sbjct: 109 SSNTKKIKEYLQNLIKRKIIIAE--------------NYADRNHVEVSAASILAKSERER 154
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL---SEN--IDPVFGFPQLVRFSWST 269
+ +I +GSGYP DP T +FL EN ID + +L+R SWST
Sbjct: 155 EVDKIK-----KIFGYDFGSGYPSDPKTVEFLKIIKENGKIDES-PYKELIRKSWST 205
>gi|448738065|ref|ZP_21720096.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
gi|445802649|gb|EMA52953.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
Length = 208
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 103/234 (44%), Gaps = 36/234 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGPVLG + + + L + G DSK LT +R+ + I +
Sbjct: 1 MFGVDEAGRGPVLGSLFVACV-----SADTALPD-GIDDSKRLTPARREALAAEIRADER 54
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ EI + + LN ++ A I + A G + DT
Sbjct: 55 VTIAVSEITASEI--------DDGRLNALTVAAMADAIDRATATGDSGVVDACDT--DAA 104
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ +++ +A++T V AA AD ++ VGAASI AKV+RD +
Sbjct: 105 RFGRRV-------------RAETTTDVELAA-EHGADESHDHVGAASIVAKVARDEHVAD 150
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
+ E+ A GSGYPGD T+KFL E + P R SW T+ +L+
Sbjct: 151 ------LAAEHGAIGSGYPGDSSTRKFLREYVREHGDLPPFARESWKTSRDVLE 198
>gi|344210764|ref|YP_004795084.1| RNAase HII [Haloarcula hispanica ATCC 33960]
gi|343782119|gb|AEM56096.1| RNAase HII [Haloarcula hispanica ATCC 33960]
Length = 211
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + + G DSK + ++R+ + I +E+A
Sbjct: 3 FGVDEAGKGPVLGSM-----FAAAVRADPAALPDGVGDSKDIRPERRERLAGDI-RESAD 56
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ EI + + + +N ++ D + V R+ TV ++
Sbjct: 57 AVGVAEIPVERIDAD------RTDMNTLTVDGQAEALSAV------ARDGLSGTVDAGDT 104
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+ VA D+ V AD T P+VGAASI AKV+RD+ +
Sbjct: 105 DAARFGR-------RVADAVDTDVAVT---AEHGADETDPLVGAASIVAKVARDAHVADL 154
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ G GSGYP DP T+ FL++ +D P R SWST +L
Sbjct: 155 AEEYGD------VGSGYPSDPTTRAFLADYVDRHGELPACARRSWSTCDDVL 200
>gi|401406283|ref|XP_003882591.1| Ribonuclease, related [Neospora caninum Liverpool]
gi|325117006|emb|CBZ52559.1| Ribonuclease, related [Neospora caninum Liverpool]
Length = 297
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 58/129 (44%), Gaps = 42/129 (32%)
Query: 105 WMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYK 164
W + I P I MLR++K+SLNE+SH+ AI LI + + +GVNV E
Sbjct: 34 WSIHAIRPEEISAKMLRKKKHSLNEISHETAISLILRTVQSGVNVAE------------- 80
Query: 165 KKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTF 224
VA KAD S YPVV AASI AKVSRD L W
Sbjct: 81 -------------VAEKAD---------------SLYPVVSAASILAKVSRDRMLVQWK- 111
Query: 225 QEGIQIENN 233
G+Q N
Sbjct: 112 PHGLQPAEN 120
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 230 IENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDE 289
+ + +GSGYPGD T FL++N DPVFGF VRFSWSTA I +++ V VE E +E
Sbjct: 191 VSSPTFGSGYPGDAETVAFLNKNCDPVFGFDGFVRFSWSTARLIFEKRGVPVEWYEEVEE 250
Query: 290 EEEGENKKTRS-IRNFFKPK 308
E G +K +S I NFF K
Sbjct: 251 EAAGASKAKQSRITNFFAAK 270
>gi|448566780|ref|ZP_21637035.1| ribonuclease HII [Haloferax prahovense DSM 18310]
gi|445713369|gb|ELZ65146.1| ribonuclease HII [Haloferax prahovense DSM 18310]
Length = 215
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 102/237 (43%), Gaps = 40/237 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC-KENA 101
+G+DEAG+GPVLGPMV D + G ADSK L ++R+++ + +++
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAKLRDRDDV 57
Query: 102 WLG-WMVE---IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+G VE I P N + R + A L V AG +V E
Sbjct: 58 EVGVAFVEPETIDDPETNMNLLTVRAQVEAAAEVAVDADEL---VCDAG-DVSE------ 107
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ +++ E E + V A +AD + +VGAASI AKV RD
Sbjct: 108 ---SRFGRRVREGVAEAGVEVEVHAQH-----------RADDEHAIVGAASIVAKVERDR 153
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I GSGYP D T+KFL E + P R SWST + ++
Sbjct: 154 RV------EEIAAAYGEVGSGYPSDGTTRKFLREYVREHGILPDCARKSWSTCADLM 204
>gi|171184725|ref|YP_001793644.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
gi|254807995|sp|B1YB67.1|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII
gi|170933937|gb|ACB39198.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
Length = 198
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 97/226 (42%), Gaps = 40/226 (17%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGPV+GPMV + +L LG DSK L+ ++R+ + I + +
Sbjct: 7 GVDEAGRGPVVGPMVIAVVV----GDGGVLARLGVRDSKRLSPERRERLYQLILEAADCV 62
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
++V + P V+ + R LN + D LI A V VD P Y
Sbjct: 63 NYVV--VEPAVVDTYVWRGL---LNALELDYTAKLIELCPADVYYVDSPDVD----PRRY 113
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
L I + +A + P V AASI AKV RD +
Sbjct: 114 GSALEFITGRRV-----------------VAMHKGESVPQVAAASIVAKVVRDRLVAL-- 154
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
++ E +GSGYP DP T+++L P P+ VR+SW T
Sbjct: 155 ----LKKEVGDFGSGYPSDPRTREWLKWGRLP----PECVRWSWRT 192
>gi|448452543|ref|ZP_21593405.1| ribonuclease HII [Halorubrum litoreum JCM 13561]
gi|445808742|gb|EMA58800.1| ribonuclease HII [Halorubrum litoreum JCM 13561]
Length = 243
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 110/256 (42%), Gaps = 32/256 (12%)
Query: 43 LGIDEAGRGPVLGPMVYGTAY-----CPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
LG+DEAG+GP LGPMV P D + DSK + +R+++ ++
Sbjct: 3 LGVDEAGKGPALGPMVAAAVIAAPASLPADVD----------DSKRIAPARREEMAAALR 52
Query: 98 KE-NAWLGWM----VEIISPNVICNSM-LRRQKYSLNEVSHDAAIGL---IRKVIAAGVN 148
+ + +G EI P+ N++ +R Q ++ + G+ +R V AG
Sbjct: 53 GDPDVAVGVARVEPAEIDRPDTDMNTLTVRGQARAVVDALAALPAGVDEPVRVVADAGDT 112
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
E + + + + + E AS+ P V A AD PVVGAAS
Sbjct: 113 SEERFAERLA---RFVAEGGEAAAGDDENGASEEGDHLPTVDVTAAHGADEDDPVVGAAS 169
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
+ AK RD+A+ + + GSGYP DP T+ FL+ + P R SWS
Sbjct: 170 VVAKTVRDAAMAEI---DAAYPGYDDLGSGYPSDPATRSFLAAYVGDHGTLPDCARASWS 226
Query: 269 TASKIL--KEKAVLVE 282
T L E++ L E
Sbjct: 227 TCEDALAAAEQSALDE 242
>gi|448584728|ref|ZP_21647471.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
gi|445727582|gb|ELZ79192.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
Length = 215
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 102/237 (43%), Gaps = 40/237 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC-KENA 101
+G+DEAG+GPVLGPMV D + G ADSK L ++R+++ + +++
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAKLRDRDDV 57
Query: 102 WLG-WMVE---IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+G VE I P N + R + A L V AG +V E
Sbjct: 58 EVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADEL---VCDAG-DVSE------ 107
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ +++ E E + V A +AD + +VGAASI AKV RD
Sbjct: 108 ---SRFGRRIREGLAEAGVEVEVHAQH-----------RADDEHAIVGAASIVAKVERDR 153
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ E I GSGYP D T++FL E + P R SWST + ++
Sbjct: 154 RV------EEIAASYGEVGSGYPSDGTTREFLREYVREHGILPDCARKSWSTCADLM 204
>gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP6]
gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP6]
Length = 210
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 43/239 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSICK 98
++G DEAG+GPV+G M ++ + L LG DSK L+ KR+ + + +I
Sbjct: 3 LMGADEAGKGPVIGSMFVAGLVIDEERFFD-LAVLGVKDSKMLSPAKREALARKITTIAT 61
Query: 99 ENAWLGWMVEIISP----NVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+ L E+I + + M+R + + D AI + AA VN E +
Sbjct: 62 DQYILEVRAEVIDELRLVMTMNDIMVRSFSQVVGRLHADRAI-----LDAADVNA-ERFA 115
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
V ++ K ++ E KAD + VV AASI AKV
Sbjct: 116 QAV---RNHSKTSMDLIAE---------------------HKADQRHHVVSAASILAKVR 151
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD +++ + +I GSGYP D T FLSE + P R SW+TA +I
Sbjct: 152 RDRSMRELENEMHCKI-----GSGYPHDRDTIAFLSEWVRENKDLPPCARHSWTTAQRI 205
>gi|399577795|ref|ZP_10771547.1| rnase hii [Halogranum salarium B-1]
gi|399237237|gb|EJN58169.1| rnase hii [Halogranum salarium B-1]
Length = 219
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 35/239 (14%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI-CKENA 101
+G DEAG+GPVLGPMV + L DSK + +R++I ++ ++
Sbjct: 4 VGADEAGKGPVLGPMVAAAV-----RTDPTLLPHDIDDSKQVAPARREEIATALRTHDDV 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G VI + + +N ++ A + + V G V D E
Sbjct: 59 DVGV-------GVISTDRIDDPETDMNSLTVAAQVEAVAAVACDGDTVVVDAGDV--SEE 109
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ +++ + E+ + + ++ AD T+ +VGAASI AKV RDS +
Sbjct: 110 RFGRRVRDGVAEIGVDIDVVSE-----------HGADETHGIVGAASIVAKVERDSMV-- 156
Query: 222 WTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
E I E +A+ GSGYP DP T++FL + P R SWST + +L +
Sbjct: 157 ----EAIAAEYDAYGDVGSGYPSDPKTRRFLKAYVADHGDVPDCARRSWSTCADLLAAR 211
>gi|448350813|ref|ZP_21539624.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
gi|445635685|gb|ELY88852.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
Length = 254
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 96/249 (38%), Gaps = 42/249 (16%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M + D G ADSK L +RD++ D++ ++
Sbjct: 20 FGVDEAGKGPALGSMFAAAVHVETD----AALPEGIADSKRLAPARRDELADTLRADDRI 75
Query: 103 LGWMVEII-----SPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+ EI P NS+ R E +
Sbjct: 76 GIGLAEITPAQIDDPETDMNSLTVRAHAQAIESLSKENENKDENENENKDENENENEFSA 135
Query: 158 GP-----------PESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKADSTYPVVG 205
P + + +++++ EL + AD P+ VG
Sbjct: 136 DPLTGLCDACDTDADRFARRVTDACTLELELDARHGADENSPI---------------VG 180
Query: 206 AASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRF 265
AASI AKV+RD+ + E I E + GSGYP DP T++FL +D P + R
Sbjct: 181 AASIVAKVARDAHV------ETIADEFGSVGSGYPSDPTTREFLERYVDEHGELPPVARA 234
Query: 266 SWSTASKIL 274
SW+T +L
Sbjct: 235 SWATCEDVL 243
>gi|255513539|gb|EET89805.1| ribonuclease HII [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 212
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 66 KDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKY 125
K +NE +G DSK L+ K+R+ + SI + + V+ I+P I +M K
Sbjct: 5 KKSNERKFAEIGVRDSKMLSRKRRELLFKSINSISDAIA--VDKITPAEINQAM--SNKI 60
Query: 126 SLNEVSHDAAIGLIRKVIAAGVNVREVYVDT---VGPPESYKKKLSEIFPELIITVASKA 182
SLNE+ AI + ++ VY+D+ + + K+S P +I + KA
Sbjct: 61 SLNELE---AIRFAKLFDQLKEDIGTVYLDSPDVIQEKFGIRFKMSSGKPLKVIGLKQKA 117
Query: 183 DSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGD 242
KADS YPVV AASI AKV RD +K I+I GSGYP D
Sbjct: 118 QKGIKFTKVISEHKADSKYPVVSAASIIAKVVRDREVKKIEKSLRIRI-----GSGYPSD 172
Query: 243 PVTKKFLSENIDPVFG------FPQLVRFSWSTASKILKEK 277
S+ ID V G VR WST I + K
Sbjct: 173 -------SKTIDAVRGNLTNSALLSHVREHWSTMRSIKQTK 206
>gi|448634381|ref|ZP_21674779.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
gi|445749354|gb|EMA00799.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
Length = 211
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 46/245 (18%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + E G DSK + ++R+ + + I +
Sbjct: 3 FGVDEAGKGPVLGSM-----FAAAVRAEPAALPDGVGDSKDIKPQRRERLAEEIHESADA 57
Query: 103 LGWM---VEIISPN-VICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+G VE I + N++ + Q +L+ V+ D GL V A +
Sbjct: 58 VGVAEIPVERIDDDETDMNTLTVEAQAEALSAVARD---GLSGTVDAGDTDA-------- 106
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
E + ++++ + A AD T P+VGAASI AK +R++
Sbjct: 107 ---ERFGRRVAGAVDAEVTVTAEHG--------------ADETDPLVGAASIIAKEAREA 149
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL--K 275
+ + G GSGYP DP T+ FL++ +D P R SWST +L
Sbjct: 150 HVAELAEEYG------DVGSGYPSDPTTRSFLADCVDRHGELPACARRSWSTCDDVLAAA 203
Query: 276 EKAVL 280
E+A L
Sbjct: 204 EQATL 208
>gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348]
gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348]
Length = 208
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 103/225 (45%), Gaps = 35/225 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRG ++GPMV + + LK G DSK LT KKR+++ D I E+
Sbjct: 3 IGIDEAGRGCLIGPMVV-VGVALNERSIVALKQSGVKDSKKLTRKKREELFDLILSESE- 60
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
G V P I N+ +LN +++ I +I + + +N V VD VG
Sbjct: 61 -GVAVAKALPEEIDNN-------NLNSLTYTKVIEIIDAL--SWLNPEVVTVDKVG---- 106
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
E+ + A + P + KAD + +ASI AKV RD +
Sbjct: 107 ---------KEIEVIRAIEDLGFKP----NVVHKADELFVEASSASIVAKVIRDRLI--- 150
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSW 267
E ++ E +GSGYP D T +++ + + P ++R SW
Sbjct: 151 ---ESLKKEFGDFGSGYPSDRKTVQWVLDLVSRGEEPPNIIRRSW 192
>gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
Length = 255
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 117/276 (42%), Gaps = 55/276 (19%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN-- 100
+G+DEAGRGP +G MV P E L+ ++G DSKAL R ++ I N
Sbjct: 9 IGVDEAGRGPFVGDMVIVGVIGPSRVFESLV-SIGLKDSKALEPVARRELFWEILSSNVD 67
Query: 101 --AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR-------E 151
AWL +SP I + ++NE+ + I I K+++ R
Sbjct: 68 IVAWL------VSPFTI-------DRGNMNELEY-IRICRILKLLSYSRLARSKPGNSLR 113
Query: 152 VYVDTV-GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
+YVD V G ES ++ I+ E + V + +AD+ YP V AAS+
Sbjct: 114 IYVDEVKGYGESVRECAMRIYGEHVEVV--------------MEPEADARYPAVSAASVI 159
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
AKV RD + G GSGYP DP ++ +L+ P +R SW
Sbjct: 160 AKVIRDRNIDVLGKITG------GLGSGYPSDPASRAWLATIYGRWDKPPVFIRRSWGIV 213
Query: 271 SKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFK 306
I G I + G +++RS+ +F +
Sbjct: 214 RDI-------APGWHIVKHVKHG-RRRSRSLLDFME 241
>gi|448406608|ref|ZP_21573062.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
gi|445677179|gb|ELZ29682.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
Length = 252
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 38/242 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + +L ++G DSK + ++R ++ +I +E
Sbjct: 4 FGVDEAGKGPVLGSMFAAAVAV---DPADLPDDVG--DSKGIAPERRRELAATI-REVGS 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV----NVREVYVDTVG 158
+G + EI + SL +H A+ + + GV + E YVD G
Sbjct: 58 VG-VAEIPVERIDDEET---DMNSLTVAAHAEAVDALADAVE-GVPTDDDPLEGYVD-AG 111
Query: 159 PPES--YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++++ D+ P + A AD TY VVGAASI AKV+RD
Sbjct: 112 DTNAVRFERRVE--------------DAAQPPIDARAEHGADETYVVVGAASIVAKVARD 157
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + E + E GSGYPGD T+ FL + P R SW T + +L
Sbjct: 158 AHV------EALAEEYGDVGSGYPGDDTTRDFLEGYVADHEELPACARASWQTCTDVLAA 211
Query: 277 KA 278
++
Sbjct: 212 QS 213
>gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049]
gi|74516083|sp|Q5UXT4.1|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049]
Length = 211
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 46/238 (19%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + + G DSK + ++R+ + I +E+A
Sbjct: 3 FGVDEAGKGPVLGSM-----FAAAVRADPAALPGGVGDSKDIRPERRERLAKEI-RESAD 56
Query: 103 LGWMVEIISPNVICNS------MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ EI + + + Q +L+ V+ D GL V A +
Sbjct: 57 AVGIAEISVERIDADETDMNTLTVEGQAEALSAVARD---GLSGTVDAGDTDAAR----- 108
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++++ + A AD T +VGAASI AKV+RD
Sbjct: 109 ------FGRRVADAVDTDVAVTAEHG--------------ADETDSLVGAASIIAKVARD 148
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + + E GSGYP DP T+ FL++ +D P R SWST +L
Sbjct: 149 THVAE------LAAEYGDVGSGYPSDPTTRTFLADYVDRHGELPACARRSWSTCDDVL 200
>gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184]
gi|189043646|sp|A1RU36.1|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184]
Length = 195
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 40/228 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV + E LL+ LG DSK L+ KR+ I I +
Sbjct: 2 ICGIDEAGRGPVVGPMVIAAV---AGDGERLLQ-LGVRDSKTLSPTKREVIYARIIEVAD 57
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ ++V + P++I + RR LN + D LI A YVD+ P+
Sbjct: 58 CVNYVV--VEPHIIDEYVRRRM---LNSLELDFTARLIELCPA-----ELYYVDS---PD 104
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
++ + ++ +A + P V AASI AKV RD +
Sbjct: 105 VNSRRYGDAL-------------SFITGRRVVALHGGESVPQVAAASIVAKVIRDRLI-- 149
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
+ ++ E +GSGYP D T ++L PV + VR SW T
Sbjct: 150 ----DILKREIGDFGSGYPSDVKTIEWLRLGKIPV----ECVRRSWRT 189
>gi|374328021|ref|YP_005086221.1| ribonuclease HII [Pyrobaculum sp. 1860]
gi|356643290|gb|AET33969.1| ribonuclease HII [Pyrobaculum sp. 1860]
Length = 195
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 103/242 (42%), Gaps = 56/242 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGPV+GP+V + E L+ LG DSK LT R+ + + + +
Sbjct: 2 IAGVDEAGRGPVVGPLVIAVV----AGDGEALRRLGVRDSKKLTPGAREVLYREVLRVSE 57
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ ++V + P EV A+ GL+ N E+
Sbjct: 58 CVNYVV--VEP---------------YEVDRYASRGLL--------NALEL--------- 83
Query: 162 SYKKKLSEIFPELIITVAS---KADS-----TYPVVGAAIASKADSTYPVVGAASICAKV 213
Y +L E+ P + V S AD ++ +A P V AASI AKV
Sbjct: 84 DYTARLIELCPADVYYVDSPDVDADRYGSGLSFLTGRRVVALHKGEKVPQVAAASIVAKV 143
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD L E ++ E +GSGYP D T ++L + P + VR+SW T K+
Sbjct: 144 VRDRLL------EVVKREVGDFGSGYPSDRKTVEWLRAGLVP----RECVRWSWGTVGKL 193
Query: 274 LK 275
K
Sbjct: 194 FK 195
>gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548]
gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548]
Length = 207
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 45/245 (18%)
Query: 33 PESCKSQP---CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
P+ S+P + G+DEAGRGP++GP+V + ++L +G DSKAL+ R
Sbjct: 4 PQDLLSRPYLTVIGGVDEAGRGPLVGPLVIAVVV----GDSDVLLGVGVRDSKALSPGAR 59
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ + + + + ++V + P+++ + K LN + D L+ A
Sbjct: 60 ERVFARVLEVAECVNYIV--VEPHIVD---MYTSKGLLNALEIDYTAKLL-----ATCPA 109
Query: 150 REVYVDTVG-PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
YVD+ PE Y LS + I +A P V AAS
Sbjct: 110 DVYYVDSPDVKPERYGSALSMATGKRI-----------------VALNKGERVPQVAAAS 152
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
I AKV RD + + ++ E +GSGYP DP T +F+ + P + +R SW
Sbjct: 153 IVAKVVRDRLI------DLLKREVGDFGSGYPSDPRTVEFVKRGLVP----SECIRHSWK 202
Query: 269 TASKI 273
K+
Sbjct: 203 VRFKV 207
>gi|452208016|ref|YP_007488138.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
gi|452084116|emb|CCQ37449.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
Length = 210
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 37/232 (15%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M P+D + G DSK L+ +R+ + + + ++
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRAPRDALPD-----GIDDSKRLSASRREALANRLRGDDRV 57
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSH-DAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ EI + +M +L +H +AA ++ A + +V
Sbjct: 58 GIGLAEITPERIDAGNM-----NTLTVAAHVEAADAVVEAGDAGLCDAGDVDAG------ 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ ++ + AD+T A AD++ +VGAAS+ AK +R+ + S
Sbjct: 107 RFAARVEDGL---------GADATIDA-----AHGADASDSLVGAASVLAKSARERHVAS 152
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G GSGYP DP T+ FL ++ FP R SWST I
Sbjct: 153 LADRFG------EVGSGYPSDPTTRSFLRRYVEEHGAFPPPTRRSWSTCETI 198
>gi|383787360|ref|YP_005471929.1| ribonuclease HII [Fervidobacterium pennivorans DSM 9078]
gi|383110207|gb|AFG35810.1| ribonuclease HII [Fervidobacterium pennivorans DSM 9078]
Length = 251
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 46/187 (24%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
++G+DEAGRGP+ GP+V Y +E + G ADSKAL+EK+R+++ + I
Sbjct: 24 SIIGVDEAGRGPLFGPVVAAAVYF-----DEGVYVEGIADSKALSEKQREELYNEIF--- 75
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR--KVIAAGVNVREVYVDTVG 158
A + + + +P I L + H + + R K+++ V ++ V+VD
Sbjct: 76 ARAKFGLGLATPEEI----------DLYNIFHATELAMNRALKILSQFVEIKNVFVDG-- 123
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
K L FP A K DS + AASI AKV+RD
Sbjct: 124 ------KNLKLEFP------------------AVCVVKGDSKIYQISAASILAKVTRDKI 159
Query: 219 LKSWTFQ 225
++ + FQ
Sbjct: 160 IEKFHFQ 166
>gi|448490375|ref|ZP_21607963.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
gi|445693979|gb|ELZ46117.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
Length = 236
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 29/251 (11%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA- 101
LG+DEAG+GP LGPM + L ++ DSK + +R+++ ++ + A
Sbjct: 3 LGVDEAGKGPALGPMAAAAVIA---DPTSLPADVD--DSKRIAPARREEMATALRDDPAV 57
Query: 102 WLGWM----VEIISPNVICNSM-LRRQKYSLNEVSHD--AAIGLIRKVIAAGVNVREVYV 154
+G EI P+ N++ +R Q ++ + D A +V+A + E
Sbjct: 58 AVGVARVEPTEIDRPDTDMNTLTVRGQARAVRDALADRPAETAEPVRVVADAGDTSE--- 114
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADS-TYPVVGAAIASKADSTYPVVGAASICAKV 213
E + ++L F E S D + P V A AD PVVGAAS+ AK
Sbjct: 115 ------ERFAERLVR-FVEGDDADESVGDGISLPAVDVTAAHGADGDDPVVGAASVVAKT 167
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
R + + + + GSGYP DP T+ FL+ + P R SWST
Sbjct: 168 VR---DAAMADIDAAYPDYDDLGSGYPSDPATRSFLAAYVGDHETLPDCARTSWSTCEDA 224
Query: 274 L--KEKAVLVE 282
L E++ L E
Sbjct: 225 LAAAEQSALDE 235
>gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
Length = 234
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 50/238 (21%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAG+GPVLG M A C + +L ++ DSK L+ ++R+++ ++ ++ A
Sbjct: 26 GVDEAGKGPVLGSMF---AACVVADPADLPDDVD--DSKDLSAERREELA-TVIRDRAHA 79
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAI------GLIRKVIAAGVN-VREVYVDT 156
+ EI + +L V+H A+ GL + A N VR
Sbjct: 80 VAVSEIPVARI---DDTETDMNTLTVVAHAEALEPVASDGLATYLDAGDTNAVR------ 130
Query: 157 VGPPESYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+++++++ I +L + AD + YP+VGAASI AKV R
Sbjct: 131 ------FERRVADRIEADLDLRAEHGAD---------------AAYPIVGAASIIAKVER 169
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
D+ + + E GSGYPGD T+ FL + I P R SW T+ +
Sbjct: 170 DAHVAE------LAAEYGDLGSGYPGDSTTRDFLEDYIAEHGELPACARESWQTSRDV 221
>gi|448654674|ref|ZP_21681600.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
gi|445766522|gb|EMA17649.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
Length = 211
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 46/248 (18%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + + G DSK + ++R+ + I +E+A
Sbjct: 3 FGVDEAGKGPVLGSM-----FAAAVRADPAALPGGVGDSKDIRPERRERLAKEI-RESAD 56
Query: 103 LGWMVEIISPNVICNS------MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ EI + + + Q +L+ V+ D GL V A +
Sbjct: 57 AVGIAEISVERIDADETDMNTLTVEGQAEALSAVARD---GLSGTVDAGDTDAAR----- 108
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++++ + A AD T +VGAASI AKV+RD
Sbjct: 109 ------FGRRVADAVDADVAVTAEHG--------------ADETDSLVGAASIIAKVARD 148
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + + E GSGYP DP T+ FLS+ +D P R SWST +L
Sbjct: 149 THVAE------LAAEYGDVGSGYPSDPTTRTFLSDYVDRHGELPACARRSWSTCDDVLAA 202
Query: 277 KAVLVEGD 284
+ GD
Sbjct: 203 ASQSTLGD 210
>gi|164655638|ref|XP_001728948.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
gi|159102836|gb|EDP41734.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
Length = 86
Score = 65.1 bits (157), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 10 VTEVESCIRSNDNSRNLIISSTIPESCKSQP------CVLGIDEAGRGPVLGPMVYGTAY 63
V++ +++ +++ S IP++C S C LG+DEAGRGPVLGP+VYG AY
Sbjct: 3 VSDAVPSVQATAMTQSYTWRSGIPDACVSGTGKHRVECALGVDEAGRGPVLGPLVYGIAY 62
Query: 64 CPKDNNEELLKNLGCA 79
CP D E L+++G A
Sbjct: 63 CPMDMQEH-LRSMGFA 77
>gi|448484903|ref|ZP_21606304.1| ribonuclease HII [Halorubrum arcis JCM 13916]
gi|445819336|gb|EMA69180.1| ribonuclease HII [Halorubrum arcis JCM 13916]
Length = 243
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 109/268 (40%), Gaps = 56/268 (20%)
Query: 43 LGIDEAGRGPVLGPMVYGTAY-----CPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
LG+DEAG+GP LGPMV P D + DSK + +R+++ ++
Sbjct: 3 LGVDEAGKGPALGPMVAAAVIAAPASLPADVD----------DSKRIAPARREEMAAALS 52
Query: 98 KE-NAWLGWM----VEIISPNVICNSM-LRRQKYSLNEVSHDAAIGL---IRKVIAAGVN 148
+ + +G +I P+ N++ +R Q ++ + G+ +R V AG
Sbjct: 53 GDPDVAVGVARVEPAQIDRPDTDMNTLTVRGQARAVVDALAALPAGVDEPVRVVADAGDT 112
Query: 149 VREVYVD------------TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASK 196
E + + G E+ + P + +T A AD P
Sbjct: 113 SEERFAERLARFVAEGGEAAAGDDENGASEEGHHLPTVDVTAAHGADEDDP--------- 163
Query: 197 ADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPV 256
VVGAAS+ AK RD+A+ + + GSGYP DP T+ FL+ +
Sbjct: 164 ------VVGAASVVAKTVRDAAMAEI---DAAYPGYDDLGSGYPSDPATRSFLAAYVGDH 214
Query: 257 FGFPQLVRFSWSTASKIL--KEKAVLVE 282
P R SWST L E++ L E
Sbjct: 215 GTLPDCARASWSTCEDALAAAEQSALDE 242
>gi|448426157|ref|ZP_21583103.1| ribonuclease HII [Halorubrum terrestre JCM 10247]
gi|448508077|ref|ZP_21615311.1| ribonuclease HII [Halorubrum distributum JCM 9100]
gi|448518457|ref|ZP_21617534.1| ribonuclease HII [Halorubrum distributum JCM 10118]
gi|445679648|gb|ELZ32108.1| ribonuclease HII [Halorubrum terrestre JCM 10247]
gi|445697654|gb|ELZ49714.1| ribonuclease HII [Halorubrum distributum JCM 9100]
gi|445705038|gb|ELZ56942.1| ribonuclease HII [Halorubrum distributum JCM 10118]
Length = 243
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 109/268 (40%), Gaps = 56/268 (20%)
Query: 43 LGIDEAGRGPVLGPMVYGTAY-----CPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
LG+DEAG+GP LGPMV P D + DSK + +R+++ ++
Sbjct: 3 LGVDEAGKGPALGPMVAAAVIAAPASLPADVD----------DSKRIAPARREEMAAALS 52
Query: 98 KE-NAWLGWM----VEIISPNVICNSM-LRRQKYSLNEVSHDAAIGL---IRKVIAAGVN 148
+ + +G +I P+ N++ +R Q ++ + G+ +R V AG
Sbjct: 53 GDPDVAVGVARVEPAQIDRPDTDMNTLTVRGQARAVVDALAALPAGVDEPVRVVADAGDT 112
Query: 149 VREVYVD------------TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASK 196
E + + G E+ + P + +T A AD P
Sbjct: 113 SEERFAERLARFVAEGGEAAAGDDENGASEEGHRLPTVDVTAAHGADEDDP--------- 163
Query: 197 ADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPV 256
VVGAAS+ AK RD+A+ + + GSGYP DP T+ FL+ +
Sbjct: 164 ------VVGAASVVAKTVRDAAMAEI---DAAYPGYDDLGSGYPSDPATRSFLAAYVGDH 214
Query: 257 FGFPQLVRFSWSTASKIL--KEKAVLVE 282
P R SWST L E++ L E
Sbjct: 215 GTLPDCARASWSTCEDALAAAEQSALDE 242
>gi|385805443|ref|YP_005841841.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
gi|383795306|gb|AFH42389.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
Length = 200
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 47/238 (19%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P LGIDEAGRG ++G M + D E++ K G DSK L++ KR+ + D I
Sbjct: 5 PITLGIDEAGRGCMIGSM-FVAGVVIDDRAEKVFKKYGVKDSKKLSKNKREKLYDIITSN 63
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAA--IGLIRKVIAAGVNVREVYVDTV 157
W +VE+ + ++ ++ ++++DA I + ++IA D V
Sbjct: 64 ALWFE-VVEVTPLEIDNQNINYLTIRAMRKIANDATKEIKYLNRIIA----------DIV 112
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G + +K S+ +L++ KAD + V AASI AKV RD
Sbjct: 113 GKGD-FKLVESDNIEQLVL------------------KKADENFIAVAAASIVAKVQRDR 153
Query: 218 ALKSWTFQEGIQIENN--AWGSGYPGDPVTKKFLSENIDPVFGFP-QLVRFSWSTASK 272
AL+ QI NN GSGYPGD + ++L + + P + +R W T K
Sbjct: 154 ALE--------QIRNNFGLIGSGYPGDKKSVEWLKLHYSKI---PREYIRTKWKTFKK 200
>gi|335436880|ref|ZP_08559669.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
gi|334897145|gb|EGM35282.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
Length = 256
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 50/238 (21%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAG+GPVLG M A C + +L ++ DSK L ++R+++ + ++ A
Sbjct: 48 GVDEAGKGPVLGSMF---AACIVADPADLPDDVD--DSKDLAPERREELA-VVIRDRADA 101
Query: 104 GWMVE-----IISPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVN-VREVYVDT 156
+ E I P N++ + +L V+ D GL + A N VR
Sbjct: 102 VAVSEIPVARIDDPETDMNTLTVAAHAEALEPVASD---GLATYLDAGDTNAVR------ 152
Query: 157 VGPPESYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+++++++ + +L + AD + YP+VGAASI AKV R
Sbjct: 153 ------FERRVADRVEADLDLRAEHGAD---------------AAYPIVGAASIVAKVER 191
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
D+ + + + E GSGYPGD T+ FL I+ P R SW T+ +
Sbjct: 192 DAHVAA------LAAEYGDLGSGYPGDSTTRAFLERYIEEHGELPACARESWQTSRDV 243
>gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
Length = 212
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 29/234 (12%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRG V+GP+V +D LL+ LG ADSK L+ ++R++I + + + + +
Sbjct: 4 GVDEAGRGCVVGPLVVAAVAAERDE-LPLLRALGVADSKTLSPRRREEIFEKL-RASFRV 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
G+M ++SP I + + LN++ + L R R ++VD+ P
Sbjct: 62 GYM--LVSPRRISSCLRVNGGDGLNDLEYGVMAELARSF-----RPRILFVDS--PDRDV 112
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
++ + +L + + + + D + +V AAS+ AKV RD +
Sbjct: 113 RRARRRLLEKLGVEMDVRC-----------MVRGDRRHVLVAAASVVAKVVRDRKVAMLR 161
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+ G +GSGYP DP T+K+L EN+ P +R W+T + + +
Sbjct: 162 RRLG------DFGSGYPSDPKTRKWLLENLGQAAIKPY-IRVGWATLENLRQTR 208
>gi|448641404|ref|ZP_21678014.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
gi|445760818|gb|EMA12074.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
Length = 211
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 46/248 (18%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + + G DSK + ++R+ + I +E+A
Sbjct: 3 FGVDEAGKGPVLGSM-----FAAAVRADPAALPGGVGDSKDIRPERRERLAKEI-RESAD 56
Query: 103 LGWMVEIISPNVICNS------MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ EI + + + Q +L+ V+ D GL V A +
Sbjct: 57 AVGIAEISVERIDADETDMNTLTVEGQAEALSAVARD---GLSGTVDAGDTDAAR----- 108
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ +++++ + A AD T +VGAASI AKV+RD
Sbjct: 109 ------FGRRVADAVDADVAVTAEHG--------------ADETDSLVGAASIIAKVARD 148
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ + + E GSGYP DP T+ FL++ +D P R SWST +L
Sbjct: 149 THVAE------LAAEYGDVGSGYPSDPTTRTFLADYVDRHGELPACARRSWSTCDDVLAA 202
Query: 277 KAVLVEGD 284
+ GD
Sbjct: 203 ASQSTLGD 210
>gi|379005051|ref|YP_005260723.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
gi|375160504|gb|AFA40116.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
Length = 198
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 56/242 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGPV+GP+V + E L +G DSK+L+ + R+ + I +
Sbjct: 5 VGGIDEAGRGPVVGPLVLAIVV----GDSEALSKIGVRDSKSLSPRAREVLYGKILE--- 57
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+C + + Y E+ + G++ N E+
Sbjct: 58 -----------MAVCVNYAVVEPY---EIDLHVSRGML--------NALEM--------- 86
Query: 162 SYKKKLSEIFPELI-------ITVASKADSTYPVVGAAIAS-KADSTYPVVGAASICAKV 213
Y KL E+ P + + A D + G + S P V AASI AKV
Sbjct: 87 KYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKV 146
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD E ++ E +GSGYP D T+++L P + VR+SW T K+
Sbjct: 147 VRDR------LVEMLRKEVGDFGSGYPSDRKTREWLRAGRIP----HECVRWSWETVGKL 196
Query: 274 LK 275
K
Sbjct: 197 FK 198
>gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2]
gi|74564756|sp|Q8ZXL6.1|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2]
Length = 212
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 40/226 (17%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV D+ + +G DSK L+ R+ + + I + A +
Sbjct: 4 GIDEAGRGPVIGPMVIAIVVGESDD----MIKIGVRDSKRLSPGAREAVYEKILRVAACV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
++V I P I ++ + R + E+ + A + +N + P E Y
Sbjct: 60 NYVV--IEPAEI-DAYVSRGMLNALELKYTAQL----------IN--------LCPAEYY 98
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
++ P+ ++ + IA P V AASI AKV RD ++
Sbjct: 99 YVDSPDVNPK-----RYESGLVFATGKRVIALHKGEAVPQVAAASIVAKVVRDRLIQL-- 151
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
++ E +GSGYP DP T + L E P + +R+ W T
Sbjct: 152 ----LKKEVGDFGSGYPSDPRTLQRLREGRMP----SECIRWQWKT 189
>gi|419705468|ref|ZP_14233006.1| ribonuclease [Mycoplasma canis UFG1]
gi|419706119|ref|ZP_14233650.1| ribonuclease [Mycoplasma canis UFG4]
gi|384394771|gb|EIE41205.1| ribonuclease [Mycoplasma canis UFG1]
gi|384394924|gb|EIE41357.1| ribonuclease [Mycoplasma canis UFG4]
Length = 200
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 43/184 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G DEAGRGPV GP+V P D E++ DSK L+EKKR+ + + I K+NA
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEMID-----DSKKLSEKKREILFEEI-KQNA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ + +EI S + I + +++ + IG++ +
Sbjct: 68 -IDYYIEIRSVDEINRTNPKKE----------SQIGMVNAI------------------- 97
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
KKL +I PE ++T K D P K D + AASI AKV+RD LK
Sbjct: 98 ---KKL-KIKPEYVLTDFEKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDRILKE 150
Query: 222 WTFQ 225
+ +
Sbjct: 151 YALK 154
>gi|73541556|ref|YP_296076.1| ribonuclease HII [Ralstonia eutropha JMP134]
gi|97189223|sp|Q470F1.1|RNH2_RALEJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|72118969|gb|AAZ61232.1| RNase HII [Ralstonia eutropha JMP134]
Length = 218
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 87/204 (42%), Gaps = 54/204 (26%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP+ GP VY A D + +L+ G ADSK LT KR+ + D IC+ L
Sbjct: 27 GVDEAGRGPLAGP-VYAAAVV-FDPAKPMLR--GLADSKVLTASKREALYDKICERA--L 80
Query: 104 GWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
GW + EI + N++ SML Q+ A GL K GV V VD
Sbjct: 81 GWHIAFATVEEIDTLNILHASMLAMQR---------AVQGLAEK----GVTPDLVQVDGN 127
Query: 158 GPPESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P+ FP E I+ K DS + AASI AKV+RD
Sbjct: 128 RCPQV-------PFPVEAIV-------------------KGDSLVKAISAASILAKVARD 161
Query: 217 SALKSWTFQEGIQIENNAWGSGYP 240
L T E SGYP
Sbjct: 162 REL--LTLHEVYPQYGFDAHSGYP 183
>gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53]
Length = 237
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDE G G P++ Y PKD E+LKNLG DSK L+++K + + I
Sbjct: 18 VFGIDEVGVGEFFTPLIATAVYVPKD-KLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQ 76
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEV---SHDAAIGLIR-KVIAAGVNVREVYVDTV 157
+ ++ S N++ K++ NE+ +H AI +R KV + + + + YV++
Sbjct: 77 YASALISQKSYNILFT------KFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSD 130
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y +K+ + +L K AI KA+S Y V AASI A+
Sbjct: 131 PSFNKYYEKIIVSYKDLYGFSPWKE-------KIAILKKAESHYIEVAAASIVAR 178
>gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1]
gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1]
gi|74568991|sp|Q9HNR3.1|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|189043604|sp|B0R6T4.1|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1]
gi|167727665|emb|CAP14453.1| ribonuclease H, type 2 [Halobacterium salinarum R1]
Length = 212
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 44/237 (18%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GPVLG M + + G ADSK L+ +R + LD + +
Sbjct: 4 FGVDEAGKGPVLGSM-----FAAAVAGDPAAVPDGVADSKRLSADRRAE-LDDRVRASMR 57
Query: 103 LGW----MVEIISPNVICNSM-LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
+G + I P N++ + Q +L V D G+ V A VN
Sbjct: 58 VGVAEVPVDRIDDPETDMNTLTVAAQADALGRVVAD---GMAGYVDAGDVN--------- 105
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ + ++++ + A AD Y +V AASI AKV+RD+
Sbjct: 106 --EQRFGRRVANRVAADVAVTAEHG--------------ADDEYDLVAAASIVAKVARDA 149
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + I GSGYP D T++FL+ + P+ R SW T+ L
Sbjct: 150 HVDALAAAFDADI-----GSGYPSDSTTREFLAAYVREHGELPECARASWQTSRDAL 201
>gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53]
Length = 242
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDE G G P++ Y PKD E+LKNLG DSK L+++K + + I
Sbjct: 23 VFGIDEVGVGEFFTPLIATAVYVPKD-KLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQ 81
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEV---SHDAAIGLIR-KVIAAGVNVREVYVDTV 157
+ ++ S N++ K++ NE+ +H AI +R KV + + + + YV++
Sbjct: 82 YASALISQKSYNILFT------KFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSD 135
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y +K+ + +L K AI KA+S Y V AASI A+
Sbjct: 136 PSFNKYYEKIIVSYKDLYGFSPWKE-------KIAILKKAESHYIEVAAASIVAR 183
>gi|419704823|ref|ZP_14232367.1| ribonuclease [Mycoplasma canis UF33]
gi|384392811|gb|EIE39264.1| ribonuclease [Mycoplasma canis UF33]
Length = 200
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 43/184 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G DEAGRGPV GP+V P D E++ DSK L+EKKR+ + + I K+NA
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEMID-----DSKKLSEKKREILFEEI-KQNA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ + +EI S + I + +++ + IG+ +
Sbjct: 68 -IDYYIEIRSVDEINRTNPKKE----------SQIGMANAI------------------- 97
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
KKL +I PE ++T K D P K D + AASI AKV+RD LK
Sbjct: 98 ---KKL-KIKPEYVLTDFEKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDRILKE 150
Query: 222 WTFQ 225
+ +
Sbjct: 151 YALK 154
>gi|160945102|ref|ZP_02092328.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii
M21/2]
gi|158442833|gb|EDP19838.1| ribonuclease HII [Faecalibacterium prausnitzii M21/2]
gi|295105649|emb|CBL03193.1| RNase HII [Faecalibacterium prausnitzii SL3/3]
Length = 215
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 41/179 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C G+DEAGRGP+ GP+ A C D + G DSK LTEKKR+ + D IC++
Sbjct: 26 CFAGVDEAGRGPLCGPVC--VAACILDPENPV---YGINDSKKLTEKKREALFDEICEKA 80
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
L + + + P VI + LN A +G +++ V E+
Sbjct: 81 --LAYRIIFVGPEVIDRENI------LN-----ATMGGMQQA------VEEL-------- 113
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+I P L++ ++ + + + K D+T +GAAS+ AKVSRD +
Sbjct: 114 --------DIVPNLVLVDGNRTPAGLQIPAQPVV-KGDATSASIGAASVLAKVSRDRYM 163
>gi|125625302|ref|YP_001033785.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris MG1363]
gi|389855692|ref|YP_006357936.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris NZ9000]
gi|166226671|sp|A2RP65.1|RNH3_LACLM RecName: Full=Ribonuclease HIII; Short=RNase HIII
gi|124494110|emb|CAL99111.1| RnhA protein [Lactococcus lactis subsp. cremoris MG1363]
gi|300072114|gb|ADJ61514.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris NZ9000]
Length = 292
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 28/249 (11%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
++ +P K Q ++G DE G G G ++ TA DN+ + LK +G ADSK LT++
Sbjct: 67 VAQVVP---KKQTNLIGTDEVGNGSYFGGLMV-TASFVSDNHLKFLKEMGVADSKKLTDE 122
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
K I + +E + +VE N + S S+ H+ AI L+ K + G
Sbjct: 123 KICQIAPKLIEEIPHVALVVEPEKYNEVIAS--GYNAVSIKVALHNQAIYLLEKQL--GS 178
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ +D +YKK +S A+ +P+ + +KA+ + V +
Sbjct: 179 QPESIVIDAFTTEANYKKYVS-------------AEKNHPLTNITLLTKAEDQFLAVAVS 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL-SENIDPVFGFPQLVRFS 266
SI ++ LK + + G + + G+G D V + + S+ ID L +
Sbjct: 226 SIISRYKFLENLKKLSKESGFTLPS---GAGNLSDKVAAQIIKSKGID---ALNHLAKLH 279
Query: 267 WSTASKILK 275
++ K +K
Sbjct: 280 FANTQKAMK 288
>gi|384938155|ref|ZP_10029847.1| ribonuclease [Mycoplasma canis UF31]
gi|384393116|gb|EIE39567.1| ribonuclease [Mycoplasma canis UF31]
Length = 200
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 43/184 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G DEAGRGPV GP+V P D E++ DSK L+EKKR+ + + I K+NA
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYVNEMID-----DSKKLSEKKREILFEEI-KQNA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ + +EI S + I + +++ + IG+ +
Sbjct: 68 -IDYYIEIRSVDEINRTNPKKE----------SQIGMANAI------------------- 97
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
KKL +I PE ++T K D P K D + AASI AKV+RD LK
Sbjct: 98 ---KKL-KIKPEYVLTDFEKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDRILKE 150
Query: 222 WTFQ 225
+ +
Sbjct: 151 YALK 154
>gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM
15897]
gi|224525765|gb|EEF94870.1| ribonuclease HII [Catenibacterium mitsuokai DSM 15897]
Length = 211
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LG+DEAGRGP+ GP+V G P+D +E + DSK LTEKKR+ + D I ENA
Sbjct: 21 ILGVDEAGRGPMAGPLVVGGVIFPEDFYDERIN-----DSKKLTEKKREALYDLII-ENA 74
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + +E++S + +LN V + G+ R V+++ P
Sbjct: 75 -LAYQIEVLSVEEVD---------TLN-VYEASRTGMKR------------IVESLEPDF 111
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ LS+ P I S K D+ +GAASI AKV+RD +K
Sbjct: 112 T----LSDAMPLGDIPHLS-------------IIKGDAKSISIGAASILAKVTRDRIMKE 154
Query: 222 WTFQ 225
+ Q
Sbjct: 155 YGKQ 158
>gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
Length = 218
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 52/186 (27%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+V G PK + L DSK L+EKKRD++ D I KE A
Sbjct: 38 ICGIDEAGRGPLAGPVVAGAVILPKGK-----RILYVNDSKKLSEKKRDELFDVI-KEEA 91
Query: 102 WLGWMVEIISPNVICNSMLRRQKY-----SLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
L + + I+SP I + + Y ++N++S I L V G++++++
Sbjct: 92 -LSYGIGIVSPERIDEINILQATYEAMHEAVNKLSVKPDILLNDAVTIPGIDIKQI---- 146
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P++ K D+ + +ASI AKV+RD
Sbjct: 147 ------------------------------PII------KGDAKSLSIASASILAKVTRD 170
Query: 217 SALKSW 222
+ +
Sbjct: 171 RLMTEY 176
>gi|257439821|ref|ZP_05615576.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165]
gi|257197730|gb|EEU96014.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165]
Length = 214
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 43/177 (24%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP+ GP+V A C D + + G DSK LTEKKR+ + D IC + L
Sbjct: 29 GVDEAGRGPLCGPVV--VAACILDPEKPVY---GINDSKKLTEKKREALFDEIC--DKAL 81
Query: 104 GWMVEIISPNVI-CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ + + P +I +++L + + AA GL
Sbjct: 82 AYKIVFVGPEIIDRDNILNATMSGMKQ----AAEGL------------------------ 113
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+I P L++ ++ + + + K D+T +GAASI AKVSRD +
Sbjct: 114 ------DIVPNLVLVDGNRVPAALEIPAQPVV-KGDATSASIGAASILAKVSRDRYM 163
>gi|448344676|ref|ZP_21533580.1| ribonuclease HII [Natrinema altunense JCM 12890]
gi|445637317|gb|ELY90468.1| ribonuclease HII [Natrinema altunense JCM 12890]
Length = 146
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 197 ADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPV 256
AD P+VGAASI AKV RD+ + + + E GSGYPGD T++FL+ +D
Sbjct: 64 ADDDAPLVGAASIVAKVDRDAHIAA------LADEYGPIGSGYPGDSTTREFLASYVDEH 117
Query: 257 FGFPQLVRFSWSTASKIL 274
P R SWST L
Sbjct: 118 SSLPPFARESWSTCEDAL 135
>gi|448318842|ref|ZP_21508353.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
gi|445597681|gb|ELY51754.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
Length = 220
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 43/243 (17%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
G+DEAG+GP LG M P+ + L G ADSK L ++R++ L +I +E+
Sbjct: 3 FGVDEAGKGPALGSMFAAAVRVPE---PDALPE-GIADSKRLAPERREE-LAAILREDDR 57
Query: 103 LGWMVEIISPNVI------CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ V I+P I NS+ R E + +AA G +G+ DT
Sbjct: 58 IAIGVSEIAPETIDDPETDMNSLAVRAHAEAIEAALEAADG---PTAPSGLC---DACDT 111
Query: 157 VGPPESYKKKLS---EIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+ + ++++ ++ +L + A AD P+VG AAS+ AKV
Sbjct: 112 DA--DRFARRVADACDLEGDLELAAAHGADDADPIVG---------------AASVVAKV 154
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD+++ + + E GSGYP DP T+ FL + P R SWST +
Sbjct: 155 ERDASMAA------LADEYGPVGSGYPSDPTTRTFLESYVADRGELPPFARASWSTCEDV 208
Query: 274 LKE 276
L +
Sbjct: 209 LAD 211
>gi|419704176|ref|ZP_14231726.1| ribonuclease [Mycoplasma canis PG 14]
gi|384392964|gb|EIE39416.1| ribonuclease [Mycoplasma canis PG 14]
Length = 200
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 43/184 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G DEAGRGPV GP+V P D E++ DSK L+EKKR+ + + I K+NA
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEMID-----DSKKLSEKKREILFEEI-KQNA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ + +EI S + I + +++ + IG+ +
Sbjct: 68 -IDYYIEIRSVDEINKTNPKKE----------SQIGMANAI------------------- 97
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
KKL +I PE ++T K D P K D + AASI AKV+RD L+
Sbjct: 98 ---KKL-KIKPEHVLTDFEKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDKILQE 150
Query: 222 WTFQ 225
+ +
Sbjct: 151 YALK 154
>gi|348029848|ref|YP_004872534.1| ribonuclease H [Glaciecola nitratireducens FR1064]
gi|347947191|gb|AEP30541.1| ribonuclease H [Glaciecola nitratireducens FR1064]
Length = 213
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 60/187 (32%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP++G +V TA D +L G ADSK L+EKKR++ L + K+NA
Sbjct: 19 VAGVDEVGRGPLVGDVV--TAAVILDPKRPIL---GLADSKKLSEKKRNE-LAVLIKQNA 72
Query: 102 WLGW------MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W ++EI N++ +ML Q+ G+N++ +V
Sbjct: 73 -LSWSIGRANVLEIDQLNILHATMLAMQR------------------AVEGLNIQPEHVL 113
Query: 156 TVG---PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
G PP SY S++ VV K D+ +P + AASI AK
Sbjct: 114 VDGNRCPPWSY--------------------SSHAVV------KGDALFPQISAASIIAK 147
Query: 213 VSRDSAL 219
V+RD +
Sbjct: 148 VTRDDEM 154
>gi|407718777|ref|YP_006796182.1| ribonuclease HIII [Leuconostoc carnosum JB16]
gi|407242533|gb|AFT82183.1| ribonuclease HIII [Leuconostoc carnosum JB16]
Length = 307
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 20/234 (8%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
VLG DE G G GP+ Y KD N + ++ LG ADSK LT++K I I
Sbjct: 94 SVLGSDEVGAGAYFGPLTTAAVYVSKD-NLDWVRQLGIADSKTLTDQKMKQIAPEIIHH- 151
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
L V I P + + +SH+ A+G + + IA V + +D
Sbjct: 152 --LPHHVVNIMPEKYNVLQTKNNVNQMKAISHNFALGKVLEKIAPNVP-DGILIDQFAQE 208
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+Y K L I+ + Y +K + + V AASI A+V A+
Sbjct: 209 STYYKYLRNAQQSHIVN-----QNVY------FTTKGEQYHLSVAAASILARVVELDAIA 257
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ + G+ + G+G+ D + K + + +D + F +L + A KIL
Sbjct: 258 RLSEEAGMLLP---IGAGHQVDIIAAKLMKKGLD-LNHFAKLHFANTQKAKKIL 307
>gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC
15579]
gi|187772591|gb|EDU36393.1| ribonuclease HII [Clostridium sporogenes ATCC 15579]
Length = 269
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 50/231 (21%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP+ GP+V A N EE+ + L DSK L+EKKR++ LD I +E
Sbjct: 84 LIAGVDEVGRGPLAGPIV-AAAVVLDLNVEEMHRILNIKDSKKLSEKKREE-LDIIIREK 141
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A + + + ++ I R +S NEV A GL NV+ V + G
Sbjct: 142 A-ISYNIALVDNRTIDE---RGIAWSNNEVLKRAVEGL---------NVKPDLVLSDG-- 186
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
Y K I E II K DS + +ASI AKV RD+ +K
Sbjct: 187 --YAVKNLNIRNEFII-------------------KGDSKSVSIASASIIAKVYRDNMMK 225
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPV--FGFPQLVRFSWST 269
++ + + N+ G G E+I + +G ++ R S+ T
Sbjct: 226 EYSKELSMYGFNHNAGYG----------TEEHIQAIKKYGTSKIHRMSFLT 266
>gi|300704217|ref|YP_003745820.1| ribonuclease HII [Ralstonia solanacearum CFBP2957]
gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957]
Length = 236
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 51/202 (25%)
Query: 26 LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
L +S + +S+ + G+DEAGRGP+ GP+ G N + +K G ADSK LT
Sbjct: 13 LPLSQSPAAGKRSRRILCGVDEAGRGPLAGPVTAGAVVL---NPRKPIK--GLADSKVLT 67
Query: 86 EKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
K+R+ + D I ++ L W V EI N++ +ML Q+ +
Sbjct: 68 AKRREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------V 112
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ V A GV P+L+ ++ V A + K D+
Sbjct: 113 QGVAAQGV-----------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDA 147
Query: 200 TYPVVGAASICAKVSRDSALKS 221
P + AASI AKV+RD L +
Sbjct: 148 LVPAISAASILAKVTRDRQLAA 169
>gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4]
Length = 214
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ G A PKD + L DSK L+E +R+++ I KE A
Sbjct: 34 ICGIDEAGRGPLAGPVAAGAAILPKD-----CRILYLNDSKKLSESRREELFLEI-KEKA 87
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ W V I+ P R + ++ + +++A +R+ I+ V +V ++
Sbjct: 88 -IAWSVGIVGPE-------RIDEINILQATYEA----MRQAISKLDPVPQVLLNDA---- 131
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+T+ A P++ K D+ + AASI AKV+RD ++
Sbjct: 132 --------------VTIPGVAIPQVPII------KGDAKSVSIAAASILAKVTRDHMMEE 171
Query: 222 W 222
+
Sbjct: 172 Y 172
>gi|328948714|ref|YP_004366051.1| ribonuclease H [Treponema succinifaciens DSM 2489]
gi|328449038|gb|AEB14754.1| Ribonuclease H [Treponema succinifaciens DSM 2489]
Length = 199
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGP+ GP+ G P D E+L DSK L+EKKR+ D I +++
Sbjct: 4 LVGIDEAGRGPLAGPVTAGCVLLPIDFPVEILN-----DSKKLSEKKREAASDVIREKSC 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W + I+S +I + + + +++ D ++R + A + E
Sbjct: 59 ---WGIGIVSEKIIDEINILQADFKAMKIAFD----MMRMKLPAWCEKNKFNF------E 105
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
K + I ++ K V+ KADS +P V AASI AKV RD +
Sbjct: 106 QCKNSMQIIVDGNMLPFTDKNLDIKAVI------KADSKFPCVMAASILAKVQRDKIM 157
>gi|451344262|ref|ZP_21913322.1| hypothetical protein HMPREF9943_01547 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449336976|gb|EMD16144.1| hypothetical protein HMPREF9943_01547 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 211
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 43/183 (23%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
++G+DEAGRGP+ GP+ G PK+ ++ + DSK LT KKR++ L I K N
Sbjct: 20 TIIGLDEAGRGPMAGPLTVGGVIFPKNYYDKRIN-----DSKQLTAKKREE-LSEIIKAN 73
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L + VE+IS + K ++ + S + + +I +
Sbjct: 74 A-LAYKVEVISVEEV-------DKLNVYQASREGMLRIINTI------------------ 107
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
I P+ +T A ++ P K DS + AASI AKV+RD ++
Sbjct: 108 --------AIHPDYALTDAMPLNNYIPHTSII---KGDSLSLSIAAASILAKVTRDHIME 156
Query: 221 SWT 223
+
Sbjct: 157 EYA 159
>gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|424819944|ref|ZP_18244982.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|342326723|gb|EGU23207.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
Length = 189
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 50/185 (27%)
Query: 42 VLGIDEAGRGPVLGPMVY-GTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ GIDEAGRG + G +V G + PK +E++K LG +DSK LTE+KR++I ++ K +
Sbjct: 4 ICGIDEAGRGALAGELVVAGCVFKPK-FKKEIIK-LGLSDSKKLTEQKREEIFLNLEKMS 61
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+L V R VD +G
Sbjct: 62 DYL------------------------------------------VVYFRNTIVDKIGLS 79
Query: 161 ESYKKKLSEI---FPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ ++ L+ I F E D Y V KADS+ P V AASI AKVSRD
Sbjct: 80 DCLRRALNVIKMHFNECNFIYDGNCD--YGVKNIKTIVKADSSVPQVSAASIIAKVSRDR 137
Query: 218 ALKSW 222
++ +
Sbjct: 138 QMRRF 142
>gi|386333599|ref|YP_006029769.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
gi|334196048|gb|AEG69233.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
Length = 236
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 51/202 (25%)
Query: 26 LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
L +S + +++ + G+DEAGRGP+ GP+ G N + +K G ADSK LT
Sbjct: 13 LPLSQSPAAGKRARRILCGVDEAGRGPLAGPVTAGAVVL---NPRKPIK--GLADSKVLT 67
Query: 86 EKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
KKR+ + D I ++ L W V EI N++ +ML Q+ +
Sbjct: 68 AKKREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------V 112
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ V A GV P+L+ ++ V A + K D+
Sbjct: 113 QGVAAQGV-----------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDA 147
Query: 200 TYPVVGAASICAKVSRDSALKS 221
P + AASI AKV+RD L +
Sbjct: 148 LVPAISAASILAKVTRDRQLAA 169
>gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D]
gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|404377816|ref|ZP_10982916.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D]
gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|348612883|gb|EGY62490.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
Length = 232
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 52/210 (24%)
Query: 18 RSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG 77
+ N + L++S P + +++ + G+DEAGRGP+ GP+ TA N + +K G
Sbjct: 5 KPNPDQLGLLLSQE-PAAKRARRILCGVDEAGRGPLAGPV---TAAAVVLNPRKPIK--G 58
Query: 78 CADSKALTEKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVS 131
ADSK LT KKR+ + D I ++ L W V EI N++ +ML Q+ V
Sbjct: 59 LADSKILTAKKREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQR----AVH 112
Query: 132 HDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGA 191
AA+G P+L+ ++ V A
Sbjct: 113 GVAALG--------------------------------TLPDLVQVDGNRCPQVAFAVEA 140
Query: 192 AIASKADSTYPVVGAASICAKVSRDSALKS 221
+ K D+ P + AASI AKV+RD L +
Sbjct: 141 VV--KGDALVPAISAASILAKVTRDRQLAA 168
>gi|421888303|ref|ZP_16319403.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
gi|378966342|emb|CCF96151.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
Length = 236
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 51/202 (25%)
Query: 26 LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
L +S + +++ + G+DEAGRGP+ GP+ G N + +K G ADSK LT
Sbjct: 13 LPLSQSPAAGKRARRILCGVDEAGRGPLAGPVTAGAVVL---NPRKPIK--GLADSKVLT 67
Query: 86 EKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
KKR+ + D I ++ L W V EI N++ +ML Q+ +
Sbjct: 68 AKKREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------V 112
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ V A GV P+L+ ++ V A + K D+
Sbjct: 113 QGVAAQGV-----------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDA 147
Query: 200 TYPVVGAASICAKVSRDSALKS 221
P + AASI AKV+RD L +
Sbjct: 148 LVPAISAASILAKVTRDRQLAA 169
>gi|421897361|ref|ZP_16327729.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
Length = 236
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 51/202 (25%)
Query: 26 LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
L +S + +++ + G+DEAGRGP+ GP+ G N + +K G ADSK LT
Sbjct: 13 LPLSQSPAAGKRARRILCGVDEAGRGPLAGPVTAGAVVL---NPRKPIK--GLADSKVLT 67
Query: 86 EKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
KKR+ + D I ++ L W V EI N++ +ML Q+ +
Sbjct: 68 AKKREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------V 112
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ V A GV P+L+ ++ V A + K D+
Sbjct: 113 QGVAAQGV-----------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDA 147
Query: 200 TYPVVGAASICAKVSRDSALKS 221
P + AASI AKV+RD L +
Sbjct: 148 LVPAISAASILAKVTRDRQLAA 169
>gi|313114085|ref|ZP_07799637.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623494|gb|EFQ06897.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255]
Length = 215
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 41/179 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C G+DEAGRGP+ GP+ A C D + G DSK LTEKKR+ + D I ++
Sbjct: 26 CFAGVDEAGRGPLCGPVC--VAACILDPENPV---FGINDSKKLTEKKREALFDEIIEKA 80
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
L + + + P +I + LN A +G +++ V E+
Sbjct: 81 --LAYKIVFVGPEIIDRDNI------LN-----ATMGGMKQA------VEEL-------- 113
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+I P L++ ++ + +V A K D+T +GAAS+ AKVSRD +
Sbjct: 114 --------DIVPNLVLVDGNRTPAGL-LVPAQPVVKGDATSASIGAASVLAKVSRDRYM 163
>gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 252
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 51/193 (26%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
E+C + + GIDE GRGP+ GP+V G PKD E++ L DSK L+EKKR+++
Sbjct: 65 ENCMEE-YICGIDEVGRGPLAGPVVAGAVILPKD---EMI--LYLNDSKKLSEKKREELY 118
Query: 94 DSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
D I + G + I+SP I +E++ ++ A +
Sbjct: 119 DIIMERAVAAG--IGIVSPARI------------DEIN----------ILQATYEAMRMA 154
Query: 154 VDTVGPPESYKKKLSEIFPELI----ITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+D + ++ P L+ +T+ S P++ K D+ + AASI
Sbjct: 155 IDNL-----------KVQPTLLLNDAVTIPSVNIRQIPII------KGDAKSVSIAAASI 197
Query: 210 CAKVSRDSALKSW 222
AKV+RD +K +
Sbjct: 198 IAKVTRDRLMKEY 210
>gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
Length = 236
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
+++ + G+DEAGRGP+ GP+ G N + +K G ADSK LT KKR+ + D I
Sbjct: 24 RARRILCGVDEAGRGPLAGPVTAGAVVL---NPRKPIK--GLADSKVLTAKKREALYDEI 78
Query: 97 CKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR 150
++ L W V EI N++ +ML Q+ ++ V A GV
Sbjct: 79 VEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------VQGVAAQGV--- 120
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
P+L+ ++ V A + K D+ P + AASI
Sbjct: 121 --------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDALVPAISAASIL 158
Query: 211 AKVSRDSALKS 221
AKV+RD L +
Sbjct: 159 AKVTRDRQLAA 169
>gi|295100799|emb|CBK98344.1| RNase HII [Faecalibacterium prausnitzii L2-6]
Length = 214
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 45/181 (24%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C G+DEAGRGP+ GP+ A C D + G DSK L+EKKR+ + D I ++
Sbjct: 26 CFAGVDEAGRGPLCGPVC--VAACILDPEAPV---YGINDSKKLSEKKREALFDQIVEKA 80
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
L + + + P++I + LN A +G +R+ +
Sbjct: 81 --LAYRIVFVGPDIIDRDNI------LN-----ATMGGMRQAVEG--------------- 112
Query: 161 ESYKKKLSEIFPELIITVASK--ADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+I P L++ ++ A T P A K D+T +GAASI AKVSRD
Sbjct: 113 -------LDIVPNLVLVDGNRIPAGLTMP---AQPVVKGDATSASIGAASILAKVSRDRY 162
Query: 219 L 219
+
Sbjct: 163 M 163
>gi|355677531|ref|ZP_09060434.1| ribonuclease HII [Clostridium citroniae WAL-17108]
gi|354813096|gb|EHE97709.1| ribonuclease HII [Clostridium citroniae WAL-17108]
Length = 219
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP+ GP+ G PKD + L DSK L+EK+R+++ + I KE A
Sbjct: 34 VCGIDEAGRGPLAGPVAAGAVILPKD-----CRILYLNDSKKLSEKRREELFEEI-KEKA 87
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W V I+SP I + + + Y E D A+G + GV + D V P
Sbjct: 88 -AAWSVGIVSPARIDDINILQATY---EAMRD-AVGRL------GVTPDVLLNDAVTIPG 136
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
K++ P++ K D+ + AAS+ AKV+RD +
Sbjct: 137 LPMKQV-------------------PII------KGDAKSLSIAAASVLAKVTRDHMMAE 171
Query: 222 W 222
+
Sbjct: 172 Y 172
>gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87]
Length = 202
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 54/237 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRGP+ GP+V K E++ DSK LTEKKR+ + I E
Sbjct: 17 VLGIDEAGRGPIAGPLVVAGVCFEKGFTNEMID-----DSKKLTEKKREALFSLITNEAL 71
Query: 102 WLGWMVEIISPNVI-CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
W + + +I +I ++ R + ++ E++H+A + ++ + P
Sbjct: 72 W--YQILVIEEKIIDKKNIYRTTQEAMLEIAHNAPVDIV--------------LSDAMPL 115
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
S K+ + K D + AASI AKV+RD +K
Sbjct: 116 PSLDKEWESVI------------------------KGDQKSLSIAAASILAKVTRDRYMK 151
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
E + + GYP TK + E ++ ++G R S+ K+L+ K
Sbjct: 152 K--LDELYPMYGFSKHKGYP----TKAHI-EALN-IYGVLDCHRRSYGPVQKMLEIK 200
>gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1]
gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1]
Length = 210
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 59/243 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAGRGP+ GP+V K E + DSK L+EKKR+ + D I ++
Sbjct: 19 IIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAIN-----DSKQLSEKKRESLYDLIIRD-- 71
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + +EII +V + VD + +
Sbjct: 72 ALAYQIEII-------------------------------------DVED--VDRLNVYQ 92
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIAS----KADSTYPVVGAASICAKVSRDS 217
+ KK + + + I P +G IA K DS +GAASI AKV+RD
Sbjct: 93 ASKKGMIDAIHHIAIQPDFALSDAMP-LGDEIAHNAIIKGDSLSMSIGAASILAKVTRDR 151
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
+K + Q A GYP TK+ + + ++G + R S+ IL E+
Sbjct: 152 IMKKYDLQ--YPEYGFAQHKGYP----TKQ--HKELLKMYGVTPIHRRSFQPVIDILNEQ 203
Query: 278 AVL 280
L
Sbjct: 204 LAL 206
>gi|430810424|ref|ZP_19437539.1| ribonuclease HII [Cupriavidus sp. HMR-1]
gi|429497115|gb|EKZ95658.1| ribonuclease HII [Cupriavidus sp. HMR-1]
Length = 226
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 81/183 (44%), Gaps = 53/183 (28%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP+ GP VY A N ++ G ADSK L+ +KR+ + D IC+ L
Sbjct: 28 GVDEAGRGPLAGP-VYAAAVV--LNPARQIR--GLADSKILSAEKREALFDRICEHA--L 80
Query: 104 GWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
GW + EI S N++ SML Q+ ++ + A+GV V VD
Sbjct: 81 GWHIASASVEEIDSINILHASMLAMQRA-------------VQGLAASGVIPDLVQVDGN 127
Query: 158 GPPESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P+ FP E I+ K D+ + AASI AKV+RD
Sbjct: 128 RCPQV-------AFPVEAIV-------------------KGDAKVRAISAASILAKVARD 161
Query: 217 SAL 219
L
Sbjct: 162 REL 164
>gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J]
gi|238691815|sp|B2UBB5.1|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J]
Length = 232
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 52/214 (24%)
Query: 18 RSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG 77
+ N + L++S P + +++ + G+DEAGRGP+ GP+ TA N + +K G
Sbjct: 5 KPNPDQLGLLLSQE-PAAKRARRILCGVDEAGRGPLAGPV---TAAAVVLNPRKPIK--G 58
Query: 78 CADSKALTEKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVS 131
ADSK LT +KR+ + D I ++ L W V EI N++ +ML Q+ V
Sbjct: 59 LADSKILTARKREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQR----AVQ 112
Query: 132 HDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGA 191
AA+G P+L+ ++ V A
Sbjct: 113 GVAALG--------------------------------TLPDLVQVDGNRCPQVAFAVEA 140
Query: 192 AIASKADSTYPVVGAASICAKVSRDSALKSWTFQ 225
+ K D+ P + AASI AKV+RD L + +
Sbjct: 141 IV--KGDALVPAISAASILAKVTRDRQLAALHIE 172
>gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1]
gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1]
Length = 258
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 43/183 (23%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ GIDE GRGP+ GP+V P D LG DSK L+EK+R+ I +E
Sbjct: 74 LIAGIDEVGRGPLAGPVVAAAVILPAD-----FCLLGINDSKKLSEKQREAFYQYITEEA 128
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ W IISP I + ++ + S A + + +NV+
Sbjct: 129 --IAWSTGIISPQEI-------DELNIYQASKKAMVTALNT-----LNVK---------- 164
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+ ++ A + S YP + K D+ + AASI AKV+RD ++
Sbjct: 165 -----------PDHLLIDAMELGSPYPEMSLI---KGDARSISIAAASIVAKVTRDRMME 210
Query: 221 SWT 223
++
Sbjct: 211 EYS 213
>gi|241890105|ref|ZP_04777403.1| ribonuclease HII [Gemella haemolysans ATCC 10379]
gi|241863727|gb|EER68111.1| ribonuclease HII [Gemella haemolysans ATCC 10379]
Length = 258
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 48/207 (23%)
Query: 36 CKSQPC--VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
C + C + GIDE GRGP+ GP+V KDN E G DSK L+EKKR+++
Sbjct: 62 CYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDNYFE-----GLNDSKKLSEKKREELY 116
Query: 94 DSICKENAWLGWMVEIISPNVICN-SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ I KE IC + +KY+ + + A I + R V
Sbjct: 117 EQIRKEAVAYA----------ICEVDNIEIEKYN---IYNAARIAMQRAV---------- 153
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+KL E+ P+ ++ A ++ YP+ ++ K D + AAS+ AK
Sbjct: 154 ------------EKL-EVKPDFLLIDAMPFEN-YPIPNFSMV-KGDEKSVSIAAASVIAK 198
Query: 213 VSRDSALKSWTFQ-EGIQIENNA-WGS 237
V RD+ +K + + ENNA +G+
Sbjct: 199 VYRDNLMKEYAKKYPHYDFENNAGYGT 225
>gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15]
Length = 236
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 87/202 (43%), Gaps = 51/202 (25%)
Query: 26 LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
L +S + +++ + G+DEAGRGP+ GP+ G N + ++ G ADSK LT
Sbjct: 13 LPLSQSPAAGKRARRILCGVDEAGRGPLAGPVTAGAVVL---NPRKPIQ--GLADSKVLT 67
Query: 86 EKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
KKR+ + D I ++ L W V EI N++ +ML Q+ +
Sbjct: 68 AKKREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------V 112
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ V A GV P+L+ ++ V A + K D+
Sbjct: 113 QGVAAQGV-----------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDA 147
Query: 200 TYPVVGAASICAKVSRDSALKS 221
P + AASI AKV+RD L +
Sbjct: 148 LVPAISAASILAKVTRDRQLAA 169
>gi|293363602|ref|ZP_06610358.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
gi|292552951|gb|EFF41705.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
Length = 245
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 22 NSRNLIIS--STIPESCKS----QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN 75
N++NL ++ + I E S Q ++G+DE G G GP+V + P +N E KN
Sbjct: 3 NNQNLFVTKNAKILEYNSSFLLNQLNIIGVDETGVGDYFGPLVTAAVFIP-NNLLEYFKN 61
Query: 76 LGCADSKALTEKKRDDILDSICKENAWL-GWMVEIISPNVICNSMLRRQKYSLNEVSHDA 134
LG DSK + +K+ L + K + +++ N I N+ + + L +H
Sbjct: 62 LGVKDSKLIKNEKQIHYLANEIKSKCYYKTYVLSNSGYNKIDNNY--KNIHKLKFFAHSH 119
Query: 135 AIGLIRKVIAA-GVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADS-TYPVVGAA 192
AI + ++++ V + +++D ++ K EI +I+ SK + P++
Sbjct: 120 AINSLEELLSLRNVKIDYIFIDQYTTLNAFNKYYDEI---IILNNWSKINEFKSPIL--- 173
Query: 193 IASKADSTYPVVGAASICAK 212
+A KA+S + V AASI A+
Sbjct: 174 LAHKAESIHLSVAAASILAR 193
>gi|443469619|ref|ZP_21059773.1| Ribonuclease HII [Pseudomonas pseudoalcaligenes KF707]
gi|442899071|gb|ELS25602.1| Ribonuclease HII [Pseudomonas pseudoalcaligenes KF707]
Length = 200
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 84/201 (41%), Gaps = 50/201 (24%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
CV G+DE GRGP+ GP+V TA D + LG DSK L+E +RD + D I +E
Sbjct: 13 CVAGVDEVGRGPLCGPVV--TAAVILDPARPI---LGLNDSKKLSEARRDALFDEI-REK 66
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L W C + ++ + H + + R V V + +D
Sbjct: 67 A-LAW----------CIARAEVEEIDQLNILHATMLAMQRAVEGLSVTPKLALID----- 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 -------GNRCPKLKVPAA-------PVV------KGDSQVPAIAAASILAKVSRD---- 146
Query: 221 SWTFQEGIQIENNAWGSGYPG 241
+E ++++ G G G
Sbjct: 147 ----REMVELDARYPGYGIAG 163
>gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 254
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 40/181 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V G PKD+ + L DSK LTEK+R+++ + I +E
Sbjct: 72 ICGIDEVGRGPLAGPVVAGAVILPKDS-----QILYLNDSKKLTEKRREELYEVIMREAV 126
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G + I+SP R + ++ + +++A + K+ V + D V P
Sbjct: 127 AVG--IGIVSPA-------RIDEINILQATYEAMWEAVGKLC---VEPNVLLNDAVTIP- 173
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ P I+ V P++ K D+ + AASI AKV+RD +
Sbjct: 174 --------MIPPHIVQV--------PII------KGDAKSVSIAAASIVAKVTRDRLMTE 211
Query: 222 W 222
+
Sbjct: 212 Y 212
>gi|371777738|ref|ZP_09484060.1| ribonuclease HII [Anaerophaga sp. HS1]
Length = 211
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 41/182 (22%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P V G DEAGRG + GP+V P+D N LL DSK LTEK+R+ + + I KE
Sbjct: 21 PTVAGCDEAGRGCLAGPVVAAAVILPEDFNHPLLN-----DSKQLTEKRRNQLREIIEKE 75
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ W V ++ R+ +N ++ A + + + + P
Sbjct: 76 A--IAWAVAMVD---------NREIDKIN-------------ILNASIKAMHLAIAQLNP 111
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + V Y + K D+TY + AAS+ AK RD +
Sbjct: 112 ------------APISLLVDGNRFHPYKNLKHQCIVKGDATYQCIAAASVLAKTHRDQWM 159
Query: 220 KS 221
KS
Sbjct: 160 KS 161
>gi|254492019|ref|ZP_05105197.1| ribonuclease HII [Methylophaga thiooxidans DMS010]
gi|224462834|gb|EEF79105.1| ribonuclease HII [Methylophaga thiooxydans DMS010]
Length = 190
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 46/178 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V G+DE GRGP+ GP+V DN E G ADSK L+EK+R + L + KE+
Sbjct: 6 LVAGVDEVGRGPLAGPVVTAAVILDPDNPIE-----GLADSKKLSEKRR-EFLVPLIKEH 59
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
A L W +M R + +++++ + + + R V A + V VD +
Sbjct: 60 A-LAW------------AMGRAEPEEIDQINILQASLLAMKRAVEALSITPGHVLVDGIH 106
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P+ K + I K D P + AASI AKV+RD
Sbjct: 107 APDLNCKTTTVI-------------------------KGDQKEPAIAAASILAKVARD 139
>gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34]
gi|189043647|sp|Q1LNE4.1|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII
gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus
metallidurans CH34]
Length = 226
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 80/183 (43%), Gaps = 53/183 (28%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP+ GP VY A N ++ G ADSK L+ +KR+ + D IC L
Sbjct: 28 GVDEAGRGPLAGP-VYAAAVV--LNPARQIR--GLADSKILSAEKREALFDRICDHA--L 80
Query: 104 GWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
GW + EI S N++ SML Q+ ++ + A+GV V VD
Sbjct: 81 GWHIASASVEEIDSINILHASMLAMQRA-------------VQGLAASGVIPDLVQVDGN 127
Query: 158 GPPESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P+ FP E I+ K D+ + AASI AKV+RD
Sbjct: 128 RCPQV-------AFPVEAIV-------------------KGDAKVRAISAASILAKVARD 161
Query: 217 SAL 219
L
Sbjct: 162 REL 164
>gi|77457342|ref|YP_346847.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1]
gi|97189197|sp|Q3KH98.1|RNH2_PSEPF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|77381345|gb|ABA72858.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1]
Length = 213
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 88/206 (42%), Gaps = 58/206 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE KR+ + D IC++
Sbjct: 22 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEAKREKLYDEICEKA- 75
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++++
Sbjct: 76 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHIQ----- 111
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 112 ----------------PKLAMIDGNRC-PKLPMRSEAVV-KGDSKVPAIAAASILAKVSR 153
Query: 216 DSALKSWTF-QEGIQIENNAWGSGYP 240
D + ++ G I + GYP
Sbjct: 154 DREMAAFELIYPGYGISGH---KGYP 176
>gi|330719016|ref|ZP_08313616.1| ribonuclease HIII [Leuconostoc fallax KCTC 3537]
Length = 214
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LG DE G G GP+ Y +D N + ++ LG ADSK LT+ D++ K A
Sbjct: 1 MLGSDEVGAGAYFGPLTTAAVYISQD-NLDWVRQLGVADSKTLTD---HDMIKMAPKIIA 56
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L V + P + + +SH+ A+ + + IA + + +D P+
Sbjct: 57 HLPHHVVNLLPEKYNAIQPQNNVNQMKAISHNFALHKVLEKIAPQ-KPQAILIDQFALPQ 115
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+Y K L+ + I+ ++ Y +KA+ + V AASI A+ +K
Sbjct: 116 TYYKHLTNANQQPIVR-----ENVY------FTTKAEQYHLSVAAASILARYVELQTMKK 164
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
+ + GI + G+G D V + L + +D
Sbjct: 165 LSAEVGITLP---IGAGKAVDLVAAELLRQQVD 194
>gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 254
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 40/181 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V G PKD+ + L DSK LTEK+R+++ + I +E
Sbjct: 72 ICGIDEVGRGPLAGPVVAGAVILPKDS-----QILYLNDSKKLTEKRREELYEVIMREAI 126
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G + I+SP R + ++ + +++A + K+ V + D V P
Sbjct: 127 AVG--IGIVSPA-------RIDEINILQATYEAMREAVGKLC---VEPNVLLNDAVTIP- 173
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ P I+ V P++ K D+ + AASI AKV+RD +
Sbjct: 174 --------MIPPHIVQV--------PII------KGDAKSVSIAAASIVAKVTRDRLMTE 211
Query: 222 W 222
+
Sbjct: 212 Y 212
>gi|410994996|gb|AFV96461.1| hypothetical protein B649_00735 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 50/176 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ + + G DSK LTEKKR+ + D IC+ +A
Sbjct: 3 LCGIDEAGRGPLAGPLTIAGVILHQPIS-------GLNDSKKLTEKKREALFDIICENSA 55
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL-IRKVIAAGVNVREVYVDTVGPP 160
+ + R ++E+ A + +R+++AA +Y
Sbjct: 56 Y---------------HIARFSAAQIDELGLSACLAAGLREIMAALGEADYLY------- 93
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+S + V G KAD+T P V AASI AKV+RD
Sbjct: 94 --------------------DGNSKFGVSGLRTMVKADATIPEVSAASILAKVTRD 129
>gi|346308011|ref|ZP_08850139.1| ribonuclease HII [Dorea formicigenerans 4_6_53AFAA]
gi|345904366|gb|EGX74114.1| ribonuclease HII [Dorea formicigenerans 4_6_53AFAA]
Length = 219
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
ST E K P + GIDE GRGP+ GP+V G PKD+ L DSK L+EKKR
Sbjct: 27 STFEEEYKDYPYICGIDEVGRGPLAGPVVAGAVILPKDD-----MILYLNDSKKLSEKKR 81
Query: 90 DDILDSICKENAWLG 104
+ + D I G
Sbjct: 82 EMLYDEIMNRAVATG 96
>gi|392391148|ref|YP_006427751.1| ribonuclease HII [Ornithobacterium rhinotracheale DSM 15997]
gi|390522226|gb|AFL97957.1| ribonuclease HII [Ornithobacterium rhinotracheale DSM 15997]
Length = 198
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 76/178 (42%), Gaps = 41/178 (23%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+G DEAGRG + GP+V G P D KNL DSK L++KKR+ + + I +E
Sbjct: 12 VGCDEAGRGCLAGPVVAGAVILPPD-----FKNLDLNDSKQLSKKKRNQLREIIEREA-- 64
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
L W V +SP I +EV+ ++ A + +D
Sbjct: 65 LDWAVAFVSPQEI------------DEVN----------ILNASILAMHRAID------- 95
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
KLS + PE I K Y + K D+ Y + AASI AK RD ++
Sbjct: 96 ---KLS-LKPEFIAVDGDKF-KNYQNLPHQCCIKGDANYMSIAAASILAKTHRDEYME 148
>gi|166031980|ref|ZP_02234809.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC
27755]
gi|166028433|gb|EDR47190.1| ribonuclease HII [Dorea formicigenerans ATCC 27755]
Length = 219
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
ST E K P + GIDE GRGP+ GP+V G PKD+ L DSK L+EKKR
Sbjct: 27 STFEEEYKDYPYICGIDEVGRGPLAGPVVAGAVILPKDD-----MILYLNDSKKLSEKKR 81
Query: 90 DDILDSICKENAWLG 104
+ + D I G
Sbjct: 82 EMLYDEIMNRAVATG 96
>gi|385327559|ref|YP_005881862.1| ribonuclease HII [Neisseria meningitidis alpha710]
gi|385342767|ref|YP_005896638.1| ribonuclease HII [Neisseria meningitidis M01-240149]
gi|385850461|ref|YP_005896976.1| ribonuclease HII [Neisseria meningitidis M04-240196]
gi|385856340|ref|YP_005902852.1| ribonuclease HII [Neisseria meningitidis NZ-05/33]
gi|416167818|ref|ZP_11607754.1| ribonuclease HII [Neisseria meningitidis OX99.30304]
gi|416186226|ref|ZP_11613587.1| ribonuclease HII [Neisseria meningitidis M0579]
gi|416211591|ref|ZP_11621460.1| ribonuclease HII [Neisseria meningitidis M01-240013]
gi|308388411|gb|ADO30731.1| ribonuclease HII [Neisseria meningitidis alpha710]
gi|325131049|gb|EGC53774.1| ribonuclease HII [Neisseria meningitidis OX99.30304]
gi|325137025|gb|EGC59621.1| ribonuclease HII [Neisseria meningitidis M0579]
gi|325145388|gb|EGC67665.1| ribonuclease HII [Neisseria meningitidis M01-240013]
gi|325202973|gb|ADY98427.1| ribonuclease HII [Neisseria meningitidis M01-240149]
gi|325205284|gb|ADZ00737.1| ribonuclease HII [Neisseria meningitidis M04-240196]
gi|325207229|gb|ADZ02681.1| ribonuclease HII [Neisseria meningitidis NZ-05/33]
Length = 194
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E+ G DSK L+EKKRD + + I +N +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----EIFDLPGLTDSKKLSEKKRDALAEMI--KNQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V SP I SLN + H + + R V V +++D PE
Sbjct: 60 AWHVAAASPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|408490218|ref|YP_006866587.1| ribonuclease HII RnhB [Psychroflexus torquis ATCC 700755]
gi|408467493|gb|AFU67837.1| ribonuclease HII RnhB [Psychroflexus torquis ATCC 700755]
Length = 197
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 51/201 (25%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA-- 101
G DEAGRG + GP+ PKD ELL DSK L+ KR + L+ I KE++
Sbjct: 14 GTDEAGRGCLAGPVTAAAVILPKDFKNELL-----TDSKLLSSSKR-EFLEVILKESSVS 67
Query: 102 --WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
M+E I I N+ ++ S+ +++ D
Sbjct: 68 FGIAHIMMETIDEINILNASIKAMHASIQQLTPD-------------------------- 101
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
PELI+ ++ TYP + K DS + + AASI AK +RD+ +
Sbjct: 102 ------------PELILVDGNRF-HTYPNIPHQCIIKGDSKFLSIAAASIFAKTARDAYM 148
Query: 220 KSWTFQEGIQIENNAWGSGYP 240
K T + + A GYP
Sbjct: 149 K--TIDKEFPMYGWAQNKGYP 167
>gi|93006331|ref|YP_580768.1| ribonuclease H [Psychrobacter cryohalolentis K5]
gi|122415238|sp|Q1QAL9.1|RNH2_PSYCK RecName: Full=Ribonuclease HII; Short=RNase HII
gi|92394009|gb|ABE75284.1| RNase HII [Psychrobacter cryohalolentis K5]
Length = 286
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 118/278 (42%), Gaps = 73/278 (26%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCP------------KDNNEELLKNL 76
S+ I +S S +G+DEAGRGP+LG + +A P KD +L
Sbjct: 50 SNNIAQSDTSSVLQIGVDEAGRGPLLGSVNVASAILPRAWSGLIEGQPLKDTPLSIL--- 106
Query: 77 GCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVI---------------CNS-ML 120
DSK L+EKKR D+L + +++A +G+++ I VI C ML
Sbjct: 107 --TDSKQLSEKKR-DMLYPLVQQHA-IGYVIADIPAAVIDQVNILQATMLGMRLCTEVML 162
Query: 121 RRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVAS 180
Y LN+++ D + ++ A EV D PE +L E + V
Sbjct: 163 EVIAYHLNDMAQD-----VHQLHA------EVLFDGNRCPELNYARLVE------LGVEE 205
Query: 181 KADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQE---GIQIENNAWGS 237
K D + K D+ + + AASI AKVSRD + + Q GI A
Sbjct: 206 KVDCQAWI-------KGDARHTSIAAASILAKVSRDKTMYALDAQHPEYGI-----AKHK 253
Query: 238 GYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
GYP T+ + E I+ +G R S++ K LK
Sbjct: 254 GYP----TRAHM-EAIE-TYGVLAAHRRSFAPVRKALK 285
>gi|409199141|ref|ZP_11227804.1| ribonuclease HII [Marinilabilia salmonicolor JCM 21150]
Length = 217
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 82/202 (40%), Gaps = 49/202 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G DEAGRG + GP+ P+D + LL DSK ++EKKR DIL I ++ A
Sbjct: 29 VAGCDEAGRGCLAGPVTAAAVILPEDFDHPLLN-----DSKQISEKKR-DILRQIIEDEA 82
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP-P 160
L W V ++ H+ I I ++ A + + VD + P P
Sbjct: 83 -LAWAVAMV---------------------HNEEIDQI-NILNASIRAMHLAVDQLSPAP 119
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
ES + + Y + K DS Y + AASI AK RD
Sbjct: 120 ES-------------LLIDGNRFHKYKEIPHQCIVKGDSIYRCIAAASILAKTHRD---- 162
Query: 221 SWTFQEGIQIENNAW--GSGYP 240
++ Q+ + AW GYP
Sbjct: 163 AYMLQQHEKHPFYAWDKNKGYP 184
>gi|194289778|ref|YP_002005685.1| ribonuclease hii [Cupriavidus taiwanensis LMG 19424]
gi|193223613|emb|CAQ69620.1| RIBONUCLEASE HII PROTEIN [Cupriavidus taiwanensis LMG 19424]
Length = 258
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 80/184 (43%), Gaps = 55/184 (29%)
Query: 44 GIDEAGRGPVLGPMVYGTAYC--PKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
G+DEAGRGP+ GP VY A PK G ADSK LT KR+ + + IC+
Sbjct: 31 GVDEAGRGPLAGP-VYAAAVVLDPKRPIR------GLADSKILTAAKREALYEKICERA- 82
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
LGW + EI + N++ SML Q+ ++ + A+GV V VD
Sbjct: 83 -LGWHIAFATVEEIDTINILHASMLAMQR-------------AVQGLAASGVVPDLVQVD 128
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+ YPV AI K D+ + AASI AKV+R
Sbjct: 129 GNRCPQ----------------------VAYPV--EAIV-KGDALVKAISAASILAKVAR 163
Query: 216 DSAL 219
D AL
Sbjct: 164 DRAL 167
>gi|116618810|ref|YP_819181.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|122270990|sp|Q03VG4.1|RNH3_LEUMM RecName: Full=Ribonuclease HIII; Short=RNase HIII
gi|116097657|gb|ABJ62808.1| Ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 303
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 42/250 (16%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK 74
+ I S D + + S+T+P + VLG DE G G GP+ Y ++ N E ++
Sbjct: 67 NSIHSLDTPKKM--STTLPADFANW-SVLGSDEVGAGAYFGPLTTAAVYVSQE-NLEWVR 122
Query: 75 NLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYS-------- 126
LG ADSK LT+ + I I + P+ + N L +KY+
Sbjct: 123 ALGIADSKTLTDDRMKKIAPQIIAK-----------LPHHVVN--LMPEKYNQLQPLHNV 169
Query: 127 --LNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADS 184
+ +SH+ A+G + I+ + + + +D +Y L + II ++
Sbjct: 170 NQMKAISHNFALGKVLDKISP-ITPQAILIDQFAQQSTYFNYLKNAKQQRIIH-----EN 223
Query: 185 TYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPV 244
Y +K + + V AASI A+V A+ + + GI++ G+G D V
Sbjct: 224 VY------FTTKGEQYHLSVAAASILARVVELDAMSKLSVEAGIKLP---IGAGREVDTV 274
Query: 245 TKKFLSENID 254
+ L ID
Sbjct: 275 AAELLRRGID 284
>gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
DSM 15981]
gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
DSM 15981]
Length = 217
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ G PKD L +L DSK L+EK+R+++ I KE A
Sbjct: 33 ICGIDEAGRGPLAGPVAAGAVILPKDCT---LLHLN--DSKKLSEKRREELFVQI-KEQA 86
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ W V I+ P R + ++ + +++A +R+ I AG+ V+ P+
Sbjct: 87 -VAWCVGIVGPE-------RIDEINILQATYEA----MRQAI-AGLGVK---------PD 124
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
EI I+ V P++ K D+ + AASI AKV+RD +
Sbjct: 125 ILLNDAVEIPGVDIMQV--------PII------KGDAKSVSIAAASILAKVTRDHMMAE 170
Query: 222 W 222
+
Sbjct: 171 Y 171
>gi|448545094|ref|ZP_21625837.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-646]
gi|445704612|gb|ELZ56524.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-646]
Length = 99
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 196 KADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDP 255
+AD + +VGAASI AKV RD + E I E GSGYP D T++FL E +
Sbjct: 16 RADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPSDGTTREFLREYVRE 69
Query: 256 VFGFPQLVRFSWSTASKIL 274
P R SWST + ++
Sbjct: 70 HGILPDCARKSWSTCADLM 88
>gi|385854372|ref|YP_005900885.1| ribonuclease HII [Neisseria meningitidis M01-240355]
gi|418287399|ref|ZP_12900007.1| ribonuclease HII [Neisseria meningitidis NM233]
gi|418289645|ref|ZP_12901908.1| ribonuclease HII [Neisseria meningitidis NM220]
gi|421541535|ref|ZP_15987652.1| ribonuclease HII [Neisseria meningitidis NM255]
gi|254672745|emb|CBA06746.1| Ribonuclease HII [Neisseria meningitidis alpha275]
gi|325203313|gb|ADY98766.1| ribonuclease HII [Neisseria meningitidis M01-240355]
gi|372203164|gb|EHP16877.1| ribonuclease HII [Neisseria meningitidis NM220]
gi|372203823|gb|EHP17425.1| ribonuclease HII [Neisseria meningitidis NM233]
gi|402319904|gb|EJU55408.1| ribonuclease HII [Neisseria meningitidis NM255]
Length = 194
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E+ G DSK L+EKKRD + + I +N +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----EIFDLPGLTDSKKLSEKKRDALAEMI--KNQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V SP I SLN + H + + R V V +++D PE
Sbjct: 60 AWHVAAASPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|259494067|sp|C4K435.1|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 200
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 46/183 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP+ GP+V TA D + +G ADSK L++KKR + + I +
Sbjct: 12 SIAGVDEVGRGPLAGPVV--TAAVILDPKNPI---IGLADSKTLSKKKRMALYEEITHKA 66
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
L W S+ R + ++E++ H + + R V A G+ V +D
Sbjct: 67 --LAW------------SLGRAESKEIDEINIFHATLLAMQRAVNALGIKTDHVLID--- 109
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
I P L I +S K DS P + AASI AKV+RD
Sbjct: 110 ---------GHICPILSIPSSSIV-------------KGDSKVPEISAASILAKVTRDRE 147
Query: 219 LKS 221
+++
Sbjct: 148 MEA 150
>gi|335042333|ref|ZP_08535360.1| ribonuclease HII [Methylophaga aminisulfidivorans MP]
gi|333788947|gb|EGL54829.1| ribonuclease HII [Methylophaga aminisulfidivorans MP]
Length = 191
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 54/200 (27%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V N G ADSK LTEK+R+
Sbjct: 7 VAGVDEVGRGPLAGPVVTAAVILDPQN-----PIAGLADSKKLTEKRRE----------- 50
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
++V +I + + +M R + ++E++ + + + R V A ++ V VD +
Sbjct: 51 ---FLVPLIQKHALAWAMGRAEPEEIDELNILQASLLAMKRAVEALSISPEHVLVDGIHA 107
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P KL+ +I K D + P + AASI AKV+RD
Sbjct: 108 P-----KLNCPVTTII--------------------KGDQSEPAIAAASILAKVARD--- 139
Query: 220 KSWTFQEGIQIENNAWGSGY 239
QE + ++N G G+
Sbjct: 140 -----QEMVALDNVYPGYGF 154
>gi|398976845|ref|ZP_10686655.1| ribonuclease HII [Pseudomonas sp. GM25]
gi|398138728|gb|EJM27742.1| ribonuclease HII [Pseudomonas sp. GM25]
Length = 208
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE KR+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEAKREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++++
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHIQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PKLPMRSEAVV-KGDSKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|448290099|ref|ZP_21481254.1| ribonuclease HII [Haloferax volcanii DS2]
gi|445580354|gb|ELY34738.1| ribonuclease HII [Haloferax volcanii DS2]
Length = 92
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 196 KADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDP 255
+AD + +VGAASI AKV RD + E I E GSGYP D T++FL E +
Sbjct: 9 RADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPSDGTTREFLREYVRD 62
Query: 256 VFGFPQLVRFSWSTASKIL 274
P R SWST + ++
Sbjct: 63 HGILPDCARKSWSTCADLV 81
>gi|154148444|ref|YP_001406026.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381]
gi|189043574|sp|A7I0I5.1|RNH2_CAMHC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|153804453|gb|ABS51460.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381]
Length = 185
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 46/181 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ A C + E LK DSK L+EK+R
Sbjct: 3 ICGIDEAGRGPLAGPL--HIAGCILNKQIEGLK-----DSKKLSEKRR------------ 43
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
EI+ +I NS + K+S ++ GL K + G+N
Sbjct: 44 ------EILYEEIIKNSTYKIVKFSAAQID---KFGL-SKCLKLGLN------------- 80
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+L + F + + +S + G KAD V AASI AKVSRD +++
Sbjct: 81 ----ELVDFFAPFEVKIIFDGNSKFGAEGFETMVKADDKIKEVSAASILAKVSRDRVMRN 136
Query: 222 W 222
+
Sbjct: 137 F 137
>gi|358066999|ref|ZP_09153485.1| hypothetical protein HMPREF9333_00365 [Johnsonella ignava ATCC
51276]
gi|356694848|gb|EHI56503.1| hypothetical protein HMPREF9333_00365 [Johnsonella ignava ATCC
51276]
Length = 228
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 42/185 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ GIDEAGRGP+ GP+V PKD E L N DSK +T+K+R ++ + IC +
Sbjct: 46 CICGIDEAGRGPLAGPVVAACVILPKD-TEILFLN----DSKKVTKKRRLELFEEICYKA 100
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+G V II N I + + Y + + ++ + VD V P
Sbjct: 101 VDIG--VGIIDENRIDDINILNATYE----------AMQKAIVKMDTEPDILLVDAVRIP 148
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ K++S I + D+ + AASI AKV+RD +
Sbjct: 149 DIGIKQISII-------------------------QGDARSVSIAAASIIAKVTRDKLMI 183
Query: 221 SWTFQ 225
+ Q
Sbjct: 184 EYDEQ 188
>gi|330836476|ref|YP_004411117.1| Ribonuclease H [Sphaerochaeta coccoides DSM 17374]
gi|329748379|gb|AEC01735.1| Ribonuclease H [Sphaerochaeta coccoides DSM 17374]
Length = 210
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 42/182 (23%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P + GIDEAGRGP+ GP+ P D ++L DSK L+EK+R I ++
Sbjct: 18 PRICGIDEAGRGPLAGPVCAAAVILPPDFPRDIL-----GDSKKLSEKQRLAAEIIIREQ 72
Query: 100 NAW-LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
W +GW S +Y++ + + A + KVIA V + +D
Sbjct: 73 AVWGIGWA-----------SAQEIDRYNILQATFRAMRRAVEKVIAQDRQVELLLIDG-- 119
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+ FP I + A K DS P + AASI AK +RD
Sbjct: 120 ---------NRTFPHAIPSAA--------------IIKGDSKVPEIMAASILAKTARDRF 156
Query: 219 LK 220
++
Sbjct: 157 MR 158
>gi|398864655|ref|ZP_10620187.1| ribonuclease HII [Pseudomonas sp. GM78]
gi|398244773|gb|EJN30312.1| ribonuclease HII [Pseudomonas sp. GM78]
Length = 208
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++V+
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHVQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PKLPMRSEAVV-KGDSKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|407001811|gb|EKE18721.1| Ribonuclease HII [uncultured bacterium]
Length = 224
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 35/191 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-----CADSKALTEKKRDDILDSI 96
++G DE GRGP+ GP V A KD N E+ +NL DSK L+EK+R++I D I
Sbjct: 20 IIGTDEVGRGPLCGP-VLACAAMYKDTNFEIPENLQKQFDLVRDSKKLSEKQREEIFDFI 78
Query: 97 CKENAWLGWMVEIISPNVICN--SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
C E+ ++G +CN ++ R + +S AI ++K I E
Sbjct: 79 C-EHFYIGIG--------LCNHETIDRINILEASFLSMKKAIQDLKKNIKKDEFNVECEE 129
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
++ + KK P L + Y V+G D + AASI AKV+
Sbjct: 130 KSIILVDGNKK-----IPNL-------SSEQYAVIG------GDRLVKSISAASIVAKVT 171
Query: 215 RDSALKSWTFQ 225
RD +K + +
Sbjct: 172 RDRMMKEFALK 182
>gi|339481007|ref|ZP_08656666.1| ribonuclease HIII [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 315
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
S +IP K+ VLG DE G G GP+ + +D + + ++ LG ADSK LT++K
Sbjct: 91 SDSIPIDFKNW-SVLGSDEVGAGAYFGPLTTAAVFVSED-DLDWVRQLGIADSKTLTDQK 148
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
I I A L V + P L +SH+ A+ + IA
Sbjct: 149 MRAIAPEII---ARLPHHVVNLMPEKYNQLQPNNNVNQLKAISHNFALAKVLDKIAPA-K 204
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
R + +D ++Y + LS II+ ++ Y +K + + V AAS
Sbjct: 205 PRAILIDQFAQRDTYYRYLSRSHQPRIIS-----ENVY------FTTKGEQYHLSVAAAS 253
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
I A+V + LK + G+ + G+G+ D V + L D
Sbjct: 254 ILARVVELNTLKQLSKDAGVALP---IGAGHAVDEVAAQLLRNGKD 296
>gi|385839596|ref|YP_005877226.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris A76]
gi|358750824|gb|AEU41803.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris A76]
Length = 292
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
++ +P K Q ++G DE G G G ++ TA DN+ + LK +G ADSK LT++
Sbjct: 67 VTQVVP---KKQTNLIGTDEVGNGSYFGGLMV-TASFVSDNHLKFLKEMGVADSKKLTDE 122
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
K I + +E + +VE N + S S+ H+ AI L+ K + G
Sbjct: 123 KICQIAPKLIEEIPHVALVVEPEKYNEVIASGYNA--VSIKVALHNQAIYLLEKQL--GS 178
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ +D +YKK +S A+ +P+ + +KA+ + V +
Sbjct: 179 QPESIVIDAFTTEANYKKYVS-------------AEKNHPLTNVTLLTKAEDQFLAVAVS 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL-SENIDPVFGFPQLVRFS 266
SI ++ LK + + + + G+ D V + + S+ ID L +
Sbjct: 226 SIISRYKFLENLKKLSKESSFTLPS---GAENLSDKVAAQIIKSQGID---ALNHLAKLH 279
Query: 267 WSTASKILK 275
++ K +K
Sbjct: 280 FANTQKAMK 288
>gi|357419366|ref|YP_004932358.1| RNase HII [Thermovirga lienii DSM 17291]
gi|355396832|gb|AER66261.1| RNase HII [Thermovirga lienii DSM 17291]
Length = 186
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V Y ELL +LG DSK L+ K+R+ + +++ N
Sbjct: 3 VVGVDEAGRGPLAGPVVAAAVYLENWQTRELL-SLGLNDSKKLSPKRREALFEAVL--NM 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ W + SP R KY++ + A + R V+ + V +D P
Sbjct: 60 GVCWRAQAASPA-------RIDKYNILNATLWA---MKRAVVQLPLKPDLVVIDGNMP-- 107
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + +VG ADS P V ASI AKV RD A+
Sbjct: 108 ----------------IGLDLCTEKSIVG------ADSKVPSVAVASIIAKVLRDRAM 143
>gi|373494760|ref|ZP_09585359.1| ribonuclease HII [Eubacterium infirmum F0142]
gi|371967804|gb|EHO85272.1| ribonuclease HII [Eubacterium infirmum F0142]
Length = 222
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 36/187 (19%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K + G+DE GRGP+ GP+V A C D + ++ +G DSK L+EKKR+ + D I
Sbjct: 27 KGYNLIAGVDEVGRGPLAGPVV--AAACIFDRDVDI---VGIDDSKKLSEKKRERLFDEI 81
Query: 97 CKENAWLGWMVEIISPNVICN-SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
KE A L + + S VI ++L K ++ + A LI K ++ V D
Sbjct: 82 -KEKA-LAYGIGESSCEVIDEINILEATKLAMKKAIEKADKMLISK---GKDKIQIVVFD 136
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
V K++++ E I V K D Y + AASI AKV+R
Sbjct: 137 AV--------KIADLDKEQISVV-----------------KGDQKYFSIAAASILAKVTR 171
Query: 216 DSALKSW 222
D +K +
Sbjct: 172 DKLMKEY 178
>gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268]
gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268]
Length = 217
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V TA PKD+ L L DSK +TEK+R+ + I KENA
Sbjct: 29 IAGVDEAGRGPLAGPVVAATAILPKDH---LFYYLN--DSKKMTEKRREALFLEI-KENA 82
Query: 102 WLGWMVEIISPNVI 115
+ + + I+SP I
Sbjct: 83 -IAYGIGIVSPERI 95
>gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
Length = 242
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 51/191 (26%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
+++ + G+DEAGRGP+ GP+ TA N + +K G ADSK LT KKR+ + D I
Sbjct: 30 RARRILCGVDEAGRGPLAGPV---TAAAVVLNPRKPIK--GLADSKVLTAKKREALYDEI 84
Query: 97 CKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR 150
++ L W V EI N++ +ML Q+ ++ V A GV
Sbjct: 85 VEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------VQGVAAQGV--- 126
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
P+L+ ++ V A + K D+ P + AASI
Sbjct: 127 --------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDALVPAISAASIL 164
Query: 211 AKVSRDSALKS 221
AKV+RD L +
Sbjct: 165 AKVTRDRQLAA 175
>gi|116513211|ref|YP_812118.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11]
gi|414075255|ref|YP_007000472.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris UC509.9]
gi|123125205|sp|Q02VL7.1|RNH3_LACLS RecName: Full=Ribonuclease HIII; Short=RNase HIII
gi|116108865|gb|ABJ74005.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11]
gi|413975175|gb|AFW92639.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris UC509.9]
Length = 292
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
++ +P K Q ++G DE G G G ++ TA DN+ + LK +G ADSK LT++
Sbjct: 67 VAQVVP---KKQTNLIGTDEVGNGSYFGGLMV-TASFVSDNHLKFLKEMGVADSKKLTDE 122
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
K I + +E + +VE N + S S+ H+ AI L+ K + G
Sbjct: 123 KICQIAPKLIEEIPHVALVVEPEKYNEVIASGYNA--VSIKVALHNQAIYLLEKQL--GS 178
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ +D +YKK +S A+ +P+ + +KA+ + V +
Sbjct: 179 QPESIVIDAFTTEANYKKYVS-------------AEKNHPLTNVTLLTKAEDQFLAVAVS 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL-SENIDPVFGFPQLVRFS 266
SI ++ LK + + + + G+ D V + + S+ ID L +
Sbjct: 226 SIISRYKFLENLKKLSKESSFTLPS---GAENLSDKVAAQIIKSQGID---ALNHLAKLH 279
Query: 267 WSTASKILK 275
++ K +K
Sbjct: 280 FANTQKAMK 288
>gi|344169900|emb|CCA82269.1| ribonuclease HII (RNase HII) [blood disease bacterium R229]
Length = 236
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 51/191 (26%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
+++ + G+DEAGRGP+ GP+ TA N + +K G ADSK LT KKR+ + D I
Sbjct: 24 RARRILCGVDEAGRGPLAGPV---TAAAVVLNPRKPIK--GLADSKVLTAKKREALYDEI 78
Query: 97 CKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR 150
++ L W V EI N++ +ML Q+ ++ V A GV
Sbjct: 79 VEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------VQGVAAQGV--- 120
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
P+L+ ++ V A + K D+ P + AASI
Sbjct: 121 --------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDALVPAISAASIL 158
Query: 211 AKVSRDSALKS 221
AKV+RD L +
Sbjct: 159 AKVTRDRQLAA 169
>gi|398877495|ref|ZP_10632640.1| ribonuclease HII [Pseudomonas sp. GM67]
gi|398884013|ref|ZP_10638959.1| ribonuclease HII [Pseudomonas sp. GM60]
gi|398195642|gb|EJM82676.1| ribonuclease HII [Pseudomonas sp. GM60]
gi|398202390|gb|EJM89236.1| ribonuclease HII [Pseudomonas sp. GM67]
Length = 212
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 21 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLFDEICEKA- 74
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 75 -LSWCIARAEVEEIDELNILHATMLAMQR---------AIEGL----------------- 107
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+ KL+ I +A +A++ K DS P + AASI AKVSR
Sbjct: 108 ------HIQPKLAMIDGNRCPKLAMRAEAVV---------KGDSKVPAIAAASILAKVSR 152
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 153 DREMAAFEL 161
>gi|381336353|ref|YP_005174128.1| ribonuclease HII [Leuconostoc mesenteroides subsp. mesenteroides
J18]
gi|356644319|gb|AET30162.1| ribonuclease HII [Leuconostoc mesenteroides subsp. mesenteroides
J18]
Length = 253
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 44/195 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP+ GP+V P D L DSK L+ KKRD++ D I ++
Sbjct: 71 LIAGVDEVGRGPLAGPVVAAAVILPHD-----FDVLDVIDSKQLSAKKRDELYDKIIEKA 125
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+G +G + I +N+ E V
Sbjct: 126 ISIG-------------------------------VGRVEASIIDEINIYEAA--RVAMT 152
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E+ +L+ I PE ++ A + D P K D+ +GAASI AKV+RD +
Sbjct: 153 EAV-NQLAPI-PEALLIDAMRLDIDLP---QEFLIKGDARSNSIGAASIIAKVTRDRLMA 207
Query: 221 SWTFQ-EGIQIENNA 234
S+ + G E NA
Sbjct: 208 SYGLKYPGYGFEKNA 222
>gi|116617876|ref|YP_818247.1| ribonuclease HII [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|122271923|sp|Q03Y48.1|RNH2_LEUMM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116096723|gb|ABJ61874.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 253
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 44/195 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP+ GP+V P D L DSK L+ KKRD++ D I ++
Sbjct: 71 LIAGVDEVGRGPLAGPVVAAAVILPHD-----FDVLDVIDSKQLSAKKRDELYDKIIEKA 125
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+G +G + I +N+ E V
Sbjct: 126 ISIG-------------------------------VGRVEASIIDEINIYEAA--RVAMT 152
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E+ +L+ I PE ++ A + D P K D+ +GAASI AKV+RD +
Sbjct: 153 EAV-NQLAPI-PEALLIDAMRLDLDLP---QEFLIKGDARSNSIGAASIIAKVTRDRLMA 207
Query: 221 SWTFQ-EGIQIENNA 234
S+ + G E NA
Sbjct: 208 SYGLKYPGYGFEKNA 222
>gi|398873958|ref|ZP_10629201.1| ribonuclease HII [Pseudomonas sp. GM74]
gi|398197658|gb|EJM84633.1| ribonuclease HII [Pseudomonas sp. GM74]
Length = 208
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++V+
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHVQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PKLPMRSEAVV-KGDSKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|387892468|ref|YP_006322765.1| ribonuclease HII [Pseudomonas fluorescens A506]
gi|387162846|gb|AFJ58045.1| ribonuclease HII [Pseudomonas fluorescens A506]
Length = 206
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 104/254 (40%), Gaps = 64/254 (25%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
++ V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D
Sbjct: 9 AQAHELVAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDE 63
Query: 96 ICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
IC++ L W + EI N++ +ML Q R V +
Sbjct: 64 ICEKA--LSWHIARAEVEEIDELNILHATMLAMQ----------------RAVEGLHITP 105
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P+ +T+ S+A K DS P + AASI
Sbjct: 106 KMAMIDGNRCPK--------------LTMPSEA-----------VVKGDSKVPAIAAASI 140
Query: 210 CAKVSRDSALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
AKVSRD + ++ G I + GYP PV + L+ G + R S++
Sbjct: 141 LAKVSRDREMAAFELIYPGYGIGGH---KGYP-TPVHLEALAR-----LGPAPIHRRSFA 191
Query: 269 TASKILKEKAVLVE 282
+ + + L+E
Sbjct: 192 PVRQAYEARESLIE 205
>gi|160903112|ref|YP_001568693.1| ribonuclease H [Petrotoga mobilis SJ95]
gi|160360756|gb|ABX32370.1| Ribonuclease H [Petrotoga mobilis SJ95]
Length = 208
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 37/175 (21%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGP+ GP+ G ELL +G DSK+L+ K+R+ I +
Sbjct: 16 IIGIDEAGRGPLAGPVFVGAVVIESKKEGELLAKIG-KDSKSLSPKQRERRYFQITRNFK 74
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ N + ++ + ++ + + A I L+ K++ N V +D
Sbjct: 75 YYS--------NFSTSQLI--DEINIFKATELAMIKLLEKIVEENANDYYVIID------ 118
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ F K D Y + K D T P++GAASI AK RD
Sbjct: 119 ------GKFF---------KLDYNYDCI-----VKGDQTSPLIGAASIVAKYERD 153
>gi|398930966|ref|ZP_10664897.1| ribonuclease HII [Pseudomonas sp. GM48]
gi|398957186|ref|ZP_10677136.1| ribonuclease HII [Pseudomonas sp. GM33]
gi|426408015|ref|YP_007028114.1| ribonuclease HII [Pseudomonas sp. UW4]
gi|398148633|gb|EJM37303.1| ribonuclease HII [Pseudomonas sp. GM33]
gi|398164489|gb|EJM52625.1| ribonuclease HII [Pseudomonas sp. GM48]
gi|426266232|gb|AFY18309.1| ribonuclease HII [Pseudomonas sp. UW4]
Length = 208
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++++
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHIQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PKLPMRSEAVV-KGDSKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|423690351|ref|ZP_17664871.1| ribonuclease HII [Pseudomonas fluorescens SS101]
gi|388000897|gb|EIK62226.1| ribonuclease HII [Pseudomonas fluorescens SS101]
Length = 206
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 104/254 (40%), Gaps = 64/254 (25%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
++ V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D
Sbjct: 9 AQAHELVAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDE 63
Query: 96 ICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
IC++ L W + EI N++ +ML Q R V +
Sbjct: 64 ICEKA--LSWHIARAEVEEIDELNILHATMLAMQ----------------RAVEGLHITP 105
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P+ +T+ S+A K DS P + AASI
Sbjct: 106 KMAMIDGNRCPK--------------LTMPSEA-----------VVKGDSKVPAIAAASI 140
Query: 210 CAKVSRDSALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
AKVSRD + ++ G I + GYP PV + L+ G + R S++
Sbjct: 141 LAKVSRDREMAAFELIYPGYGIGGH---KGYP-TPVHLEALAR-----LGPTPIHRRSFA 191
Query: 269 TASKILKEKAVLVE 282
+ + + L+E
Sbjct: 192 PVRQAYEARESLIE 205
>gi|398892812|ref|ZP_10645767.1| ribonuclease HII [Pseudomonas sp. GM55]
gi|398184913|gb|EJM72339.1| ribonuclease HII [Pseudomonas sp. GM55]
Length = 208
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++++
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHIQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PKLPMRSEAVV-KGDSKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|398917454|ref|ZP_10658157.1| ribonuclease HII [Pseudomonas sp. GM49]
gi|398172848|gb|EJM60700.1| ribonuclease HII [Pseudomonas sp. GM49]
Length = 208
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++++
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHIQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PKLPMRSEAVV-KGDSKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|331002666|ref|ZP_08326181.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407079|gb|EGG86583.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167]
Length = 214
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V PKD L DSK +TEK+RD + D I K+NA
Sbjct: 32 IAGLDEAGRGPLAGPVVAAAVILPKDIFLPFLN-----DSKKVTEKRRDVLFDEI-KQNA 85
Query: 102 WLGWMVEIISPNVICNSMLRRQKY-----SLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ + + I S +I + + Y ++N +S I L+ + G+++R+V
Sbjct: 86 -IAYGIGIASNTLIDEINILQATYEAMREAINALSTRPDILLVDAIHIPGIDIRQV 140
>gi|332298244|ref|YP_004440166.1| Ribonuclease H [Treponema brennaborense DSM 12168]
gi|332181347|gb|AEE17035.1| Ribonuclease H [Treponema brennaborense DSM 12168]
Length = 197
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 40/189 (21%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P + G+DEAGRGP+ GP+ G P D ELL DSK L+EK+R +L+S+ KE
Sbjct: 4 PLICGLDEAGRGPLAGPVSAGAVILPPDFPVELLN-----DSKKLSEKRR-AVLESLIKE 57
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
A W V ++ VI + + +++ D +R+ + A R + P
Sbjct: 58 RAC--WGVALVDHTVIDEINILQASLLAMKLAFDQ----MRQKLPAFCASR--FGSCAQP 109
Query: 160 PESYKKKLSEIFPELIITVASKADSTY------PVVGAAIASKADSTYPVVGAASICAKV 213
V++ AD T+ P V KAD+T V AASI AK
Sbjct: 110 -----------------LVSAIADGTFCPDIRVPCVA---RPKADATESAVMAASILAKT 149
Query: 214 SRDSALKSW 222
RD + ++
Sbjct: 150 ERDRVMIAY 158
>gi|269792962|ref|YP_003317866.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100597|gb|ACZ19584.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 188
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 37/179 (20%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V G+DEAGRGP+ GP+V A +D EL+ LG DSKAL+ ++R+ + ++I N
Sbjct: 2 TVAGVDEAGRGPLAGPVVAAAAVLTRDQARELM-ALGLKDSKALSPRRREALFEAIRSLN 60
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ W + S I + + K SL A+G+ V+A V + V VD P
Sbjct: 61 --VQWRAQAASWGRIDRTHV--LKASL------WAMGM--AVMALPVRPQLVLVDGSVPI 108
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
E + P+ + K DS P + AAS+ AKV RD +
Sbjct: 109 EGLR------IPQRCVV------------------KGDSKVPSIMAASVIAKVLRDRVM 143
>gi|227432240|ref|ZP_03914236.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352013|gb|EEJ42243.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 253
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 44/195 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP+ GP+V P D L DSK L+ KKRD++ D I ++
Sbjct: 71 LIAGVDEVGRGPLAGPVVAAAIILPHD-----FDVLDVIDSKQLSAKKRDELYDKIIEKA 125
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+G +G + I +N+ E V
Sbjct: 126 ISIG-------------------------------VGRVEASIIDEINIYEAA--RVAMT 152
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E+ +L+ I PE ++ A + D P K D+ +GAASI AKV+RD +
Sbjct: 153 EAV-NQLAPI-PEALLIDAMRLDLDLP---QEFLIKGDARSNSIGAASIIAKVTRDRLMA 207
Query: 221 SWTFQ-EGIQIENNA 234
S+ + G E NA
Sbjct: 208 SYGLKYPGYGFEKNA 222
>gi|416050597|ref|ZP_11577006.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347993944|gb|EGY35268.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 199
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 98/241 (40%), Gaps = 61/241 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V + E G ADSK L+EKKR + + I K+
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPQHPVE-----GLADSKTLSEKKRLLLAEEI-KQK 65
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L W + PN I LN + H + + + R + + V VD
Sbjct: 66 A-LAWALGRAEPNEIDE---------LN-ILHASMLAMERAIKHLKIQPHFVLVDG---- 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ I P L+I A K D+ P + AASI AKV+RD
Sbjct: 111 -------NRIPPNLMIP-------------AQAVVKGDALVPEISAASILAKVARD---- 146
Query: 221 SWTFQEGIQIENN------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
QE I+++ A GYP +K ++ P + R S++ K+L
Sbjct: 147 ----QEMIELDKKYPHYEFAKHRGYPTKLHLEKLREFSVLPEY------RRSFAPVKKLL 196
Query: 275 K 275
K
Sbjct: 197 K 197
>gi|339499659|ref|YP_004697694.1| ribonuclease H [Spirochaeta caldaria DSM 7334]
gi|338834008|gb|AEJ19186.1| Ribonuclease H [Spirochaeta caldaria DSM 7334]
Length = 199
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 43/189 (22%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN-AW 102
G+DEAGRGP+ GP+ +D E+L DSK L+EKKR++ I + AW
Sbjct: 5 GLDEAGRGPLAGPVCAAAVILNEDFPFEVLN-----DSKKLSEKKREEARKLIVTQALAW 59
Query: 103 -LGW--MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+GW EI + N++ S+L ++ ++D I ++K A + E VD +
Sbjct: 60 GIGWASAAEIDTINILQASLLAMER------AYDVMISTLKKSDRA-ILCSEAVVDGLYA 112
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P PV AI KAD+ P V AASI AK +RD +
Sbjct: 113 PH------------------------LPVPCKAIV-KADALVPEVMAASILAKTARDRMM 147
Query: 220 K--SWTFQE 226
+ W + E
Sbjct: 148 ERYGWIYPE 156
>gi|421767256|ref|ZP_16204012.1| Ribonuclease HIII [Lactococcus garvieae DCC43]
gi|407624254|gb|EKF51026.1| Ribonuclease HIII [Lactococcus garvieae DCC43]
Length = 292
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 37/246 (15%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL--LKNLGCADSKALTEKKRDDILD 94
+ Q ++G DE G G GP+V ++ N ++L LK LG ADSK LT+ D
Sbjct: 73 QQQTNIIGTDEVGNGSYFGPLVVVASFI---NAQDLILLKKLGVADSKKLTD-------D 122
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVS-----HDAAIGLIRKVIAAGVNV 149
IC+ L + + V + + N VS H+ AI L+ + ++ +N
Sbjct: 123 KICQIAPQLIEHITHVPLTVYPRKYNQVIESGYNAVSIKVALHNQAIFLLEQRVSEKIN- 181
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D ++Y+K L +A+ + +KA+ + V +SI
Sbjct: 182 -HIVIDAFTSEKNYEKYL-------------RAEKNKVTGKVTLLTKAEDQFLAVACSSI 227
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
A+ LK + + G+++ + G+G+ D V K + N V Q + ++
Sbjct: 228 IARYLFLVTLKELSKEAGMKLPS---GAGFLSDEVAAKIIHHN--GVEALDQYAKLHFAN 282
Query: 270 ASKILK 275
K +K
Sbjct: 283 TKKAIK 288
>gi|257897916|ref|ZP_05677569.1| ribonuclease HIII [Enterococcus faecium Com15]
gi|431752403|ref|ZP_19541086.1| ribonuclease HIII [Enterococcus faecium E2620]
gi|257835828|gb|EEV60902.1| ribonuclease HIII [Enterococcus faecium Com15]
gi|430613894|gb|ELB50893.1| ribonuclease HIII [Enterococcus faecium E2620]
Length = 305
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D I KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-ILKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 289
>gi|293553123|ref|ZP_06673761.1| ribonuclease hiii [Enterococcus faecium E1039]
gi|291602714|gb|EFF32928.1| ribonuclease hiii [Enterococcus faecium E1039]
Length = 305
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK LT+ +
Sbjct: 79 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELTDSQ 136
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ I L+ K IA
Sbjct: 137 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQTIHLLLKKIAPE-K 192
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 193 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 239
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 240 IISRASFLEELDKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 289
>gi|399116092|emb|CCG18896.1| ribonuclease HII [Taylorella asinigenitalis 14/45]
Length = 212
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S ++GIDEAGRGP+ G V+ A + E G DSK LT KR+ + I
Sbjct: 2 SDNLIIGIDEAGRGPLAGN-VFAAAVLLGSTHIE-----GLTDSKKLTAIKREQLTQIIH 55
Query: 98 KENAWLGWM---VEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN--VREV 152
+++ VE I I N+ L +L+EV + + A N + V
Sbjct: 56 EKSIRYSVAQSSVEEIDELNILNATLLAMNRALDEV---------LEALPAKYNDEILTV 106
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+D PES K K + + V SK K D T P V AASI AK
Sbjct: 107 IIDGNRIPESLKGKAPIYYKNFKLNVISKI-------------KGDLTVPAVSAASIIAK 153
Query: 213 VSRDSAL 219
SRDS +
Sbjct: 154 TSRDSHI 160
>gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1]
gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1]
Length = 192
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 43/209 (20%)
Query: 70 EELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNE 129
E +LK +G DSK L+ +KR+ + + I + ++V PN I +S +LNE
Sbjct: 13 EGMLKEVGVKDSKILSREKREKLFEIISEFAE--AYIVNKAYPNEIDSS-------NLNE 63
Query: 130 VSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV 189
+++ I +I + ++ + V +D VG + K+ E+ +
Sbjct: 64 LTYSKVIQIIYA--SLPLHPKIVTIDKVGNEDIVIMKIRELG-----------------L 104
Query: 190 GAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL 249
+ AD Y AASI AKV+RD + S G +GSGYP DP T+K++
Sbjct: 105 KDNVVFNADVKYIEASAASIIAKVTRDRIIDSLKKIYG------DFGSGYPSDPKTRKWI 158
Query: 250 SE-----NIDPVFGFPQLVRFSWSTASKI 273
E +P P ++R +W T KI
Sbjct: 159 IEIYEKDKNNP----PPIIRRTWKTLLKI 183
>gi|227552104|ref|ZP_03982153.1| ribonuclease H [Enterococcus faecium TX1330]
gi|424762401|ref|ZP_18189910.1| ribonuclease HIII [Enterococcus faecalis TX1337RF]
gi|227178770|gb|EEI59742.1| ribonuclease H [Enterococcus faecium TX1330]
gi|402424626|gb|EJV56794.1| ribonuclease HIII [Enterococcus faecium TX1337RF]
Length = 313
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 88 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 145
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D I KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 146 IQLAD-ILKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 201
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 202 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 248
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 249 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 297
>gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000]
gi|39932439|sp|Q8XZH7.1|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia
solanacearum GMI1000]
Length = 236
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 51/202 (25%)
Query: 26 LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALT 85
L +S + +++ + G+DEAGRGP+ GP+ TA N + ++ G ADSK LT
Sbjct: 13 LPLSQSPAAGKRARRILCGVDEAGRGPLAGPV---TAAAVVLNPRKPIQ--GLADSKVLT 67
Query: 86 EKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
KKR+ + D I ++ L W V EI N++ +ML Q+ +
Sbjct: 68 AKKREALYDEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQRA-------------V 112
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ V A GV P+L+ ++ V A + K D+
Sbjct: 113 QGVAAQGV-----------------------LPDLVQVDGNRCPQVAFAVEAIV--KGDA 147
Query: 200 TYPVVGAASICAKVSRDSALKS 221
P + AASI AKV+RD L +
Sbjct: 148 LVPAISAASILAKVTRDRQLAA 169
>gi|268683032|ref|ZP_06149894.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
gi|268623316|gb|EEZ55716.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
Length = 212
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 74/189 (39%), Gaps = 41/189 (21%)
Query: 31 TIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD 90
TIP G+DEAGRGP++G + P E G DSK L+EKKRD
Sbjct: 12 TIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRD 66
Query: 91 DILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR 150
+ + I KE A + W V +P I SLN + H + + R V
Sbjct: 67 ALAEMI-KEQA-VAWHVAASTPEEIA---------SLN-ILHATMLAMKRAVYGLAARPE 114
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
++++D PE + A K DS + AAS+
Sbjct: 115 KIFIDGNRIPEHLG------------------------IPAEAVVKGDSKIIEISAASVL 150
Query: 211 AKVSRDSAL 219
AK +RD+ +
Sbjct: 151 AKTARDAEM 159
>gi|293398148|ref|ZP_06642353.1| ribonuclease HII [Neisseria gonorrhoeae F62]
gi|291611411|gb|EFF40481.1| ribonuclease HII [Neisseria gonorrhoeae F62]
Length = 212
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 74/189 (39%), Gaps = 41/189 (21%)
Query: 31 TIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD 90
TIP G+DEAGRGP++G + P E G DSK L+EKKRD
Sbjct: 12 TIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRD 66
Query: 91 DILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR 150
+ + I KE A + W V +P I SLN + H + + R V
Sbjct: 67 ALAEMI-KEQA-VAWHVAASTPEEIA---------SLN-ILHATMLAMKRAVYGLAARPE 114
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
++++D PE + A K DS + AAS+
Sbjct: 115 KIFIDGNRIPEHLG------------------------IPAEAVVKGDSKIIEISAASVL 150
Query: 211 AKVSRDSAL 219
AK +RD+ +
Sbjct: 151 AKTARDAEM 159
>gi|90022228|ref|YP_528055.1| ribonuclease HII [Saccharophagus degradans 2-40]
gi|123090288|sp|Q21HI6.1|RNH2_SACD2 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|89951828|gb|ABD81843.1| Ribonuclease H [Saccharophagus degradans 2-40]
Length = 199
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 46/188 (24%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
E C ++ V G+DE GRGP+ G +V +D+ E G ADSK +TEKKRD +
Sbjct: 3 EYCMARQFVAGVDEVGRGPLAGDVVAAAVILGEDHGIE-----GLADSKKITEKKRDALF 57
Query: 94 DSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVRE 151
D +I + + R ++E++ H + + + R V + +
Sbjct: 58 D--------------VIQERAVSFCIARASVEEIDELNILHASLLAMKRAVEGLNIQPQY 103
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+YVD P+ TY A K DS + AASI A
Sbjct: 104 IYVDGNKLPKW----------------------TY---SAEAVVKGDSLVEEISAASILA 138
Query: 212 KVSRDSAL 219
KV+RD +
Sbjct: 139 KVTRDREM 146
>gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
Length = 256
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 43/186 (23%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K + GIDE GRGP+ GP+V P E ++++G DSK L+ K+R++I + I
Sbjct: 69 KGYRMIAGIDEVGRGPLAGPVVAAAVILP-----EGMEDIGLDDSKKLSAKRREEIFEMI 123
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
++ +G + I+ I + Y ++V+ AI L+
Sbjct: 124 KEQAVAIG--IGIVDAFTIDKINI----YEASKVAMKRAIELL----------------- 160
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
PE P+ ++ A + D+ P G K D+ + AASI AK RD
Sbjct: 161 ---PEQ---------PDYLLIDAMRLDTGIPQEGII---KGDAKSISIAAASIVAKEVRD 205
Query: 217 SALKSW 222
+K +
Sbjct: 206 QMMKDY 211
>gi|194099971|ref|YP_002003110.1| ribonuclease HII [Neisseria gonorrhoeae NCCP11945]
gi|254494667|ref|ZP_05107838.1| ribonuclease HII [Neisseria gonorrhoeae 1291]
gi|268593829|ref|ZP_06127996.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
gi|268597728|ref|ZP_06131895.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
gi|268599975|ref|ZP_06134142.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
gi|268602313|ref|ZP_06136480.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
gi|268604575|ref|ZP_06138742.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
gi|268683300|ref|ZP_06150162.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
gi|268687461|ref|ZP_06154323.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
gi|291042833|ref|ZP_06568574.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
gi|385336879|ref|YP_005890826.1| ribonuclease HII [Neisseria gonorrhoeae TCDC-NG08107]
gi|193935261|gb|ACF31085.1| RnhB [Neisseria gonorrhoeae NCCP11945]
gi|226513707|gb|EEH63052.1| ribonuclease HII [Neisseria gonorrhoeae 1291]
gi|268547218|gb|EEZ42636.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
gi|268551516|gb|EEZ46535.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
gi|268584106|gb|EEZ48782.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
gi|268586444|gb|EEZ51120.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
gi|268588706|gb|EEZ53382.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
gi|268623584|gb|EEZ55984.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
gi|268627745|gb|EEZ60145.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
gi|291013267|gb|EFE05233.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
gi|317165422|gb|ADV08963.1| ribonuclease HII [Neisseria gonorrhoeae TCDC-NG08107]
Length = 212
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 74/189 (39%), Gaps = 41/189 (21%)
Query: 31 TIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD 90
TIP G+DEAGRGP++G + P E G DSK L+EKKRD
Sbjct: 12 TIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRD 66
Query: 91 DILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR 150
+ + I KE A + W V +P I SLN + H + + R V
Sbjct: 67 ALAEMI-KEQA-VAWHVAASTPEEIA---------SLN-ILHATMLAMKRAVYGLAARPE 114
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
++++D PE + A K DS + AAS+
Sbjct: 115 KIFIDGNRIPEHLG------------------------IPAEAVVKGDSKIIEISAASVL 150
Query: 211 AKVSRDSAL 219
AK +RD+ +
Sbjct: 151 AKTARDAEM 159
>gi|431414521|ref|ZP_19512340.1| ribonuclease HIII [Enterococcus faecium E1630]
gi|431759735|ref|ZP_19548346.1| ribonuclease HIII [Enterococcus faecium E3346]
gi|430589254|gb|ELB27399.1| ribonuclease HIII [Enterococcus faecium E1630]
gi|430625916|gb|ELB62519.1| ribonuclease HIII [Enterococcus faecium E3346]
Length = 305
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 79 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 136
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K IA
Sbjct: 137 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-K 192
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 193 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 239
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 240 IISRASFLEELDKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 289
>gi|421728180|ref|ZP_16167335.1| ribonuclease HII [Klebsiella oxytoca M5al]
gi|410370861|gb|EKP25587.1| ribonuclease HII [Klebsiella oxytoca M5al]
Length = 198
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 91/214 (42%), Gaps = 48/214 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP++G +V TA D + +L G ADSK L+EK+R + D I KE A
Sbjct: 12 VAGVDEVGRGPLVGAVV--TAAVILDPAKPIL---GLADSKKLSEKRRLALFDEI-KEKA 65
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+C S+ R + + ++E++ H + + R V G++
Sbjct: 66 -------------LCWSLGRAEPHEIDELNILHATMLAMQRAVAGLGIS----------- 101
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
PE ++ ++ PV A+ K DS + AASI AKV+RD+ +
Sbjct: 102 ------------PEFVLIDGNRC-PPLPVPSLAVV-KGDSRVAEISAASILAKVTRDAEM 147
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
A GYP +K L +
Sbjct: 148 A--VLDREFPQYGFAQHKGYPTAFHLQKLLEHGV 179
>gi|385339235|ref|YP_005893107.1| ribonuclease HII [Neisseria meningitidis G2136]
gi|416199945|ref|ZP_11619530.1| ribonuclease HII [Neisseria meningitidis 961-5945]
gi|325143205|gb|EGC65545.1| ribonuclease HII [Neisseria meningitidis 961-5945]
gi|325197479|gb|ADY92935.1| ribonuclease HII [Neisseria meningitidis G2136]
Length = 194
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E+ G DSK L+EKKRD + + I +N +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----EIFDLPGLTDSKKLSEKKRDALAEMI--KNQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V P I SLN + H + + R V V ++++D PE
Sbjct: 60 AWHVAAAGPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|422340104|ref|ZP_16421059.1| ribonuclease HII [Fusobacterium nucleatum subsp. polymorphum F0401]
gi|355370349|gb|EHG17734.1| ribonuclease HII [Fusobacterium nucleatum subsp. polymorphum F0401]
Length = 213
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 41/184 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE-N 100
V+G+DEAGRGP+ GP+V A K+ EEL + DSK LTEKKR+ + D I K +
Sbjct: 15 VIGVDEAGRGPLAGPVV-AAAVILKEYTEELNE---INDSKKLTEKKREKLYDIIMKNFD 70
Query: 101 AWLGW-MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+G VE I I N+ + +LNE+ IR N +E V G
Sbjct: 71 VAIGISTVEEIDKLNILNADFLAMRRALNELKS------IR-------NEKEYTVLVDGN 117
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + +P+V K D+ + AASI AKV+RD +
Sbjct: 118 ----------------LKIKEYVGKQFPIV------KGDAKSLSIAAASIIAKVTRDRFM 155
Query: 220 KSWT 223
K
Sbjct: 156 KDLA 159
>gi|403237732|ref|ZP_10916318.1| ribonuclease HIII [Bacillus sp. 10403023]
Length = 311
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 44/270 (16%)
Query: 18 RSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG 77
+ + ++++ +S +P + + V G DE G G GPM AY KD LLK LG
Sbjct: 73 KKETSKKSVVKNSGLPPNIGTLSMV-GSDEVGTGDYFGPMTVVAAYVSKDKF-ALLKELG 130
Query: 78 CADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYS----------- 126
DSK L +K+ +I +SI + +I +++ +L +KY+
Sbjct: 131 VKDSKDLNDKQICEIAESI----------IHVIPYSLL---ILHNEKYNELQAKGMTQGK 177
Query: 127 LNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTY 186
+ + H+ AIG + + IA + +D P+ Y K L+ E+I D+ Y
Sbjct: 178 MKALLHNQAIGHVLRKIAP-TTPDGILIDQFAIPDVYFKHLAGQ-KEII------KDNVY 229
Query: 187 PVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTK 246
++KA+ + V AASI A+ S + + G++++ G+G D V
Sbjct: 230 ------FSTKAEGVHLSVAAASIIARYSFVKEFDKLSEKAGLELKK---GAGAQVDVVAA 280
Query: 247 KFLSEN-IDPVFGFPQLVRFSWSTASKILK 275
K + ++ I + F +L + A KI K
Sbjct: 281 KLIKKHGISALRSFTKLHFANTEKAKKIAK 310
>gi|121634067|ref|YP_974312.1| ribonuclease HII [Neisseria meningitidis FAM18]
gi|421556185|ref|ZP_16002102.1| ribonuclease HII [Neisseria meningitidis 80179]
gi|433493785|ref|ZP_20450861.1| ribonuclease HII family protein [Neisseria meningitidis NM762]
gi|433495901|ref|ZP_20452950.1| ribonuclease HII family protein [Neisseria meningitidis M7089]
gi|433497901|ref|ZP_20454918.1| ribonuclease HII family protein [Neisseria meningitidis M7124]
gi|433499974|ref|ZP_20456966.1| ribonuclease HII family protein [Neisseria meningitidis NM174]
gi|166226632|sp|A1KRM4.1|RNH2_NEIMF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|120865773|emb|CAM09502.1| ribonuclease HII [Neisseria meningitidis FAM18]
gi|402338038|gb|EJU73277.1| ribonuclease HII [Neisseria meningitidis 80179]
gi|432231963|gb|ELK87618.1| ribonuclease HII family protein [Neisseria meningitidis NM762]
gi|432237084|gb|ELK92684.1| ribonuclease HII family protein [Neisseria meningitidis M7124]
gi|432237543|gb|ELK93136.1| ribonuclease HII family protein [Neisseria meningitidis M7089]
gi|432237884|gb|ELK93473.1| ribonuclease HII family protein [Neisseria meningitidis NM174]
Length = 194
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E+ G DSK L+EKKRD + + I +N +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----EIFDLPGLTDSKKLSEKKRDALAEMI--KNQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V P I SLN + H + + R V V ++++D PE
Sbjct: 60 AWHVAAAGPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|261208746|ref|ZP_05923183.1| ribonuclease HIII [Enterococcus faecium TC 6]
gi|289565570|ref|ZP_06446017.1| ribonuclease HIII [Enterococcus faecium D344SRF]
gi|430822934|ref|ZP_19441509.1| ribonuclease HIII [Enterococcus faecium E0120]
gi|430847899|ref|ZP_19465732.1| ribonuclease HIII [Enterococcus faecium E1133]
gi|430849193|ref|ZP_19466974.1| ribonuclease HIII [Enterococcus faecium E1185]
gi|430865613|ref|ZP_19481248.1| ribonuclease HIII [Enterococcus faecium E1574]
gi|431374604|ref|ZP_19510292.1| ribonuclease HIII [Enterococcus faecium E1627]
gi|431742710|ref|ZP_19531594.1| ribonuclease HIII [Enterococcus faecium E2071]
gi|431748899|ref|ZP_19537651.1| ribonuclease HIII [Enterococcus faecium E2297]
gi|260077248|gb|EEW64968.1| ribonuclease HIII [Enterococcus faecium TC 6]
gi|289162652|gb|EFD10505.1| ribonuclease HIII [Enterococcus faecium D344SRF]
gi|430442863|gb|ELA52884.1| ribonuclease HIII [Enterococcus faecium E0120]
gi|430536275|gb|ELA76651.1| ribonuclease HIII [Enterococcus faecium E1133]
gi|430538039|gb|ELA78338.1| ribonuclease HIII [Enterococcus faecium E1185]
gi|430552960|gb|ELA92677.1| ribonuclease HIII [Enterococcus faecium E1574]
gi|430583228|gb|ELB21617.1| ribonuclease HIII [Enterococcus faecium E1627]
gi|430607679|gb|ELB44980.1| ribonuclease HIII [Enterococcus faecium E2071]
gi|430612424|gb|ELB49464.1| ribonuclease HIII [Enterococcus faecium E2297]
Length = 305
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 79 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 136
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K IA
Sbjct: 137 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-K 192
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 193 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 239
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 240 IISRASFLEELDKASAESGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 289
>gi|260583825|ref|ZP_05851573.1| ribonuclease HII [Granulicatella elegans ATCC 700633]
gi|260158451|gb|EEW93519.1| ribonuclease HII [Granulicatella elegans ATCC 700633]
Length = 257
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 45/200 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V PK+ +++LG DSK L+ KR++I I ++
Sbjct: 75 IAGVDEVGRGPLAGPVVAAAVILPKN-----IEDLGFDDSKKLSASKREEIYRLIQEKAI 129
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G + I+ ++I + Y + ++ A+ ++
Sbjct: 130 AIG--IGIVDADIIDQVNI----YQASRLAMQQAVSELK--------------------- 162
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
I P+ ++ A K D P +G K D+ + AASI AK RD ++
Sbjct: 163 --------IQPDYLLIDAMKIDVNTPQIGII---KGDAKSISIAAASIVAKQVRDQMMQE 211
Query: 222 WT-FQEGIQIENNAWGSGYP 240
+ G NNA G G P
Sbjct: 212 FDELYPGYDFSNNA-GYGTP 230
>gi|189485020|ref|YP_001955961.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|254808005|sp|B1GZ18.1|RNH2_UNCTG RecName: Full=Ribonuclease HII; Short=RNase HII
gi|170286979|dbj|BAG13500.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 210
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP+ GP+V PKD+ L DSK L+EKKR +IL I KE A
Sbjct: 20 VAGIDEAGRGPLAGPVVAAVVILPKDSAIPYLN-----DSKQLSEKKR-EILFEIIKETA 73
Query: 102 WLGWMVEIISPNVI 115
L + VE+++ +I
Sbjct: 74 -LDYAVELVNNEII 86
>gi|395648147|ref|ZP_10435997.1| ribonuclease HII [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 210
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 58/212 (27%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
++ V G+DE GRGP+ G +V TA D N ++ G DSK LTE +R+ + D
Sbjct: 13 AQAHELVAGVDEVGRGPLCGAVV--TAAVILDPNRPII---GLNDSKKLTEARREKLFDE 67
Query: 96 ICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
IC++ L W + EI N++ +ML Q+ A GL
Sbjct: 68 ICEKA--LSWHIARAEVEEIDELNILHATMLAMQR---------AVEGL----------- 105
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
I P+L + ++ + A K DS P + AASI
Sbjct: 106 -------------------HITPKLAMIDGNRCPKL--AMPAEAVVKGDSKVPAIAAASI 144
Query: 210 CAKVSRDSALKSWTF-QEGIQIENNAWGSGYP 240
AKVSRD + ++ G I + GYP
Sbjct: 145 LAKVSRDREMAAFELIYPGYGIAGH---KGYP 173
>gi|227431089|ref|ZP_03913147.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227353129|gb|EEJ43297.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 303
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 42/250 (16%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK 74
+ I S D + + +T+P + VLG DE G G GP+ Y ++ N E ++
Sbjct: 67 NSIHSLDTPKKM--GTTLPADLANW-SVLGSDEVGAGAYFGPLTTAAVYVSQE-NLEWVR 122
Query: 75 NLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYS-------- 126
LG ADSK LT+ + I I + P+ + N L +KY+
Sbjct: 123 ALGIADSKTLTDDRMKKIAPQIIAQ-----------LPHHVVN--LMPEKYNQLQPLHNV 169
Query: 127 --LNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADS 184
+ +SH+ A+G + I + + + +D +Y L + II ++
Sbjct: 170 NQMKAISHNFALGKVLDKIFP-ITPQAILIDQFAQQSTYFNYLKNAKQQRIIH-----EN 223
Query: 185 TYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPV 244
Y +K + + V AASI A+V A+ + + GI++ G+G D V
Sbjct: 224 VY------FTTKGEQYHLSVAAASILARVVELDAMSKLSVEAGIKLP---IGAGREVDTV 274
Query: 245 TKKFLSENID 254
+ L ID
Sbjct: 275 AAELLRRGID 284
>gi|399516616|ref|ZP_10758213.1| Ribonuclease HIII [Leuconostoc pseudomesenteroides 4882]
gi|398648525|emb|CCJ66240.1| Ribonuclease HIII [Leuconostoc pseudomesenteroides 4882]
Length = 309
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 30/231 (12%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
S +IP K+ VLG DE G G GP+ + +D + + ++ LG ADSK LT++K
Sbjct: 85 SDSIPIDFKNW-SVLGSDEVGAGAYFGPLTTAAVFVSED-DLDWVRQLGIADSKTLTDQK 142
Query: 89 RDDILDSICKE--NAWLGWMVE---IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI 143
I I + + M E + PN N M +SH+ A+ + I
Sbjct: 143 MRAIAPEIIARLPHHVVNLMPEKYNQLQPNNNVNQM--------KAISHNFALAKVLDKI 194
Query: 144 AAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPV 203
A R + +D ++Y + L++ II A++ Y +K + +
Sbjct: 195 AP-TKPRAILIDQFAQRDTYYRYLNKSHQPRII-----AENVY------FTTKGEQYHLS 242
Query: 204 VGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
V AASI ++V ++LK + G+ + G+G+ D V + L + D
Sbjct: 243 VAAASILSRVVELNSLKQLSESAGMPLP---IGAGHAVDEVAAQLLRDGKD 290
>gi|425055380|ref|ZP_18458856.1| ribonuclease HIII [Enterococcus faecium 505]
gi|403034049|gb|EJY45524.1| ribonuclease HIII [Enterococcus faecium 505]
Length = 313
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 88 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 145
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D I KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 146 IQLAD-ILKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 201
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 202 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 248
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 249 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GIPMLEKYA 297
>gi|257892930|ref|ZP_05672583.1| ribonuclease HIII [Enterococcus faecium 1,231,408]
gi|257829309|gb|EEV55916.1| ribonuclease HIII [Enterococcus faecium 1,231,408]
Length = 305
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D I KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-ILKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|344171454|emb|CCA84066.1| ribonuclease HII (RNase HII) [Ralstonia syzygii R24]
Length = 236
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 90/210 (42%), Gaps = 52/210 (24%)
Query: 19 SNDNSRNLIISSTIPESCKSQPCVL-GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG 77
S D + + + +P + K +L G+DEAGRGP+ GP+ TA N + +K G
Sbjct: 5 SPDAPQRALPLAQLPAAGKRARRILCGVDEAGRGPLAGPV---TAAAVVLNPRKPIK--G 59
Query: 78 CADSKALTEKKRDDILDSICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVS 131
ADSK LT KKR+ + I ++ L W V EI N++ +ML Q+
Sbjct: 60 LADSKVLTAKKREALYGEIVEKA--LAWHVAEATVEEIDRINILHATMLAMQRA------ 111
Query: 132 HDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGA 191
++ V A GV P+L+ ++ V A
Sbjct: 112 -------VQGVAAQGV-----------------------LPDLVQVDGNRCPQVAFAVEA 141
Query: 192 AIASKADSTYPVVGAASICAKVSRDSALKS 221
+ K D+ P + AASI AKV+RD L +
Sbjct: 142 IV--KGDALVPAISAASILAKVTRDRQLAA 169
>gi|421143774|ref|ZP_15603706.1| ribonuclease HII [Pseudomonas fluorescens BBc6R8]
gi|404505035|gb|EKA19073.1| ribonuclease HII [Pseudomonas fluorescens BBc6R8]
Length = 210
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 66/249 (26%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 19 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 72
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 73 -LSWHIARAEVEEIDKLNILHATMLAMQR---------AIEGL----------------- 105
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADS-TYPVVGAAIASKADSTYPVVGAASICAKVS 214
I P++ + ++ T P A K DS P + AASI AKVS
Sbjct: 106 -------------HITPKMAMIDGNRCPKLTMP---AEAVVKGDSKVPAIAAASILAKVS 149
Query: 215 RDSALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD + ++ G I + GYP PV + L+ G + R S++ +
Sbjct: 150 RDREMAAFELIYPGYGIGGH---KGYP-TPVHLEALAR-----LGPTPIHRRSFAPVRQA 200
Query: 274 LKEKAVLVE 282
+ + L+E
Sbjct: 201 FEARESLIE 209
>gi|339326107|ref|YP_004685800.1| ribonuclease HII [Cupriavidus necator N-1]
gi|338166264|gb|AEI77319.1| ribonuclease HII [Cupriavidus necator N-1]
Length = 238
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 78/185 (42%), Gaps = 57/185 (30%)
Query: 44 GIDEAGRGPVLGPMVYGTAYC--PKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
G+DEAGRGP+ GP VY A PK G ADSK LT KR+ + D IC+
Sbjct: 27 GVDEAGRGPLAGP-VYAAAVVLDPKRPIR------GLADSKILTAAKREQLYDKICERA- 78
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
LGW + EI + N++ SML Q+ ++ + A+G+ V VD
Sbjct: 79 -LGWHIAFATVEEIDTLNILHASMLAMQRA-------------VQGLAASGIVPDLVQVD 124
Query: 156 TVGPPESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
P FP E I+ K D+ + AASI AKV+
Sbjct: 125 GNRCPRVP-------FPVEAIV-------------------KGDALVRAISAASILAKVA 158
Query: 215 RDSAL 219
RD L
Sbjct: 159 RDREL 163
>gi|374340872|ref|YP_005097608.1| ribonuclease HII [Marinitoga piezophila KA3]
gi|372102406|gb|AEX86310.1| ribonuclease HII [Marinitoga piezophila KA3]
Length = 220
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 47/252 (18%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
E K ++G+DEAGRGP+ GP+V +N ++L+ + DSK L+EKKR++I
Sbjct: 4 EYLKKYGKIIGVDEAGRGPLAGPVVAAAIEVENENQLKILEEI-SNDSKKLSEKKREEIY 62
Query: 94 DSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+ + K + +EI +P I + + + + R + N+ Y
Sbjct: 63 EILIKN---FNYSIEIATPEEI----------DIYNIFSATTLAIERNL--KKYNLSNAY 107
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
V G KLS E I+ K D+ +GAASI AKV
Sbjct: 108 VIIDGK----NFKLSIENYECIV-------------------KGDAKSKTIGAASILAKV 144
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD + Q N GYP K + EN G + R +++ ++
Sbjct: 145 YRDRLMVELDKQ--YPEYNMKKHKGYPTKEHI-KLIEEN-----GIKEFHRITFNPIKRM 196
Query: 274 LKEKAVLVEGDE 285
+ EK V + E
Sbjct: 197 IIEKNVSINKKE 208
>gi|387120665|ref|YP_006286548.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415757797|ref|ZP_11481463.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416055566|ref|ZP_11579608.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|416069383|ref|ZP_11583260.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|429734061|ref|ZP_19268104.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans Y4]
gi|444334309|ref|ZP_21149901.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|348000172|gb|EGY40969.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348002850|gb|EGY43514.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348655371|gb|EGY70829.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-3]
gi|385875157|gb|AFI86716.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429153411|gb|EKX96195.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans Y4]
gi|443550570|gb|ELT58806.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 199
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 67/244 (27%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYC-PKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
+ G+DE GRGP++G +V PK E G ADSK L+EKKR + + I K+
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKQTIE------GLADSKTLSEKKRLLLAEEI-KQ 64
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTV 157
A L W ++ R + + ++E++ H + + + R + + V VD
Sbjct: 65 KA-LAW------------ALGRAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDG- 110
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ I P L+I A K D+ P + AASI AKV+RD
Sbjct: 111 ----------NRIPPNLMIP-------------AQAVVKGDALVPEISAASILAKVARD- 146
Query: 218 ALKSWTFQEGIQIENN------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
QE I+++ A GYP TK L + + FG R S++
Sbjct: 147 -------QEMIELDKKYPPYEFAKHKGYP----TKLHLEKLRE--FGVLPEYRRSFAPVK 193
Query: 272 KILK 275
K+LK
Sbjct: 194 KLLK 197
>gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningitidis MC58]
gi|385852400|ref|YP_005898914.1| ribonuclease HII [Neisseria meningitidis H44/76]
gi|416181345|ref|ZP_11611591.1| ribonuclease HII [Neisseria meningitidis M13399]
gi|427826476|ref|ZP_18993527.1| ribonuclease HII family protein [Neisseria meningitidis H44/76]
gi|433464185|ref|ZP_20421679.1| ribonuclease HII family protein [Neisseria meningitidis NM422]
gi|433487390|ref|ZP_20444569.1| ribonuclease HII family protein [Neisseria meningitidis M13255]
gi|433489564|ref|ZP_20446703.1| ribonuclease HII family protein [Neisseria meningitidis NM418]
gi|433504170|ref|ZP_20461115.1| ribonuclease HII family protein [Neisseria meningitidis 9506]
gi|433506245|ref|ZP_20463164.1| ribonuclease HII family protein [Neisseria meningitidis 9757]
gi|433508289|ref|ZP_20465175.1| ribonuclease HII family protein [Neisseria meningitidis 12888]
gi|433510462|ref|ZP_20467305.1| ribonuclease HII family protein [Neisseria meningitidis 4119]
gi|11387100|sp|Q9K1G1.1|RNH2_NEIMB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|7225412|gb|AAF40649.1| ribonuclease HII [Neisseria meningitidis MC58]
gi|316985719|gb|EFV64665.1| ribonuclease HII family protein [Neisseria meningitidis H44/76]
gi|325135118|gb|EGC57745.1| ribonuclease HII [Neisseria meningitidis M13399]
gi|325199404|gb|ADY94859.1| ribonuclease HII [Neisseria meningitidis H44/76]
gi|389604811|emb|CCA43737.1| ribonuclease HII [Neisseria meningitidis alpha522]
gi|432205995|gb|ELK62010.1| ribonuclease HII family protein [Neisseria meningitidis NM422]
gi|432226155|gb|ELK81888.1| ribonuclease HII family protein [Neisseria meningitidis M13255]
gi|432230560|gb|ELK86235.1| ribonuclease HII family protein [Neisseria meningitidis NM418]
gi|432243553|gb|ELK99064.1| ribonuclease HII family protein [Neisseria meningitidis 9506]
gi|432244261|gb|ELK99756.1| ribonuclease HII family protein [Neisseria meningitidis 9757]
gi|432249940|gb|ELL05338.1| ribonuclease HII family protein [Neisseria meningitidis 12888]
gi|432250530|gb|ELL05923.1| ribonuclease HII family protein [Neisseria meningitidis 4119]
Length = 194
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I +N +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDALAEMI--KNQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V SP I SLN + H + + R V V ++++D PE
Sbjct: 60 EWHVAAASPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|315652839|ref|ZP_07905813.1| ribonuclease HII [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485041|gb|EFU75449.1| ribonuclease HII [Lachnoanaerobaculum saburreum DSM 3986]
Length = 214
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+V PKD L DSK +TEK+RD + D I +E
Sbjct: 32 IAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLN-----DSKKVTEKRRDVLFDRIKQEAL 86
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
G I+ NV+ + + ++ + +++A I+K+
Sbjct: 87 AYGIG---IASNVLIDEI------NILQATYEAMREAIKKL------------------- 118
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
KK +I L++ D T +G K D+ + AASI AKV+RD +
Sbjct: 119 ---KKTPDI---LLVDAVHIPDITIRQLGIV---KGDARSINIAAASILAKVTRDRLMLE 169
Query: 222 W 222
+
Sbjct: 170 Y 170
>gi|149926572|ref|ZP_01914833.1| Ribonuclease H [Limnobacter sp. MED105]
gi|149824935|gb|EDM84149.1| Ribonuclease H [Limnobacter sp. MED105]
Length = 218
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 76/185 (41%), Gaps = 38/185 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V G A + N + L C SK L+ KKRD + +I
Sbjct: 21 VIGVDEAGRGPLCGPVVAGAALLNQPNT---IDGLAC--SKTLSAKKRDSLETAI----- 70
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR-KVIAAGVNVREVYVDTVGPP 160
R+ V+H + R ++ A + VD V
Sbjct: 71 --------------------RRNAKACAVAHATVEEIDRLNILQASLLAMWRAVDLVLDQ 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
K K + +I V +P A+ K D+ P + AASI AKV+RD K
Sbjct: 111 TGLKPK------QCLIAVDGNKLPKWPYQAIAVV-KGDTKIPAISAASILAKVARDEWCK 163
Query: 221 SWTFQ 225
+ Q
Sbjct: 164 THALQ 168
>gi|425059161|ref|ZP_18462513.1| ribonuclease HIII [Enterococcus faecium 504]
gi|403036400|gb|EJY47750.1| ribonuclease HIII [Enterococcus faecium 504]
Length = 313
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 88 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 145
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 146 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 201
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 202 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 248
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 249 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 297
>gi|257886734|ref|ZP_05666387.1| ribonuclease HIII [Enterococcus faecium 1,141,733]
gi|257895300|ref|ZP_05674953.1| ribonuclease HIII [Enterococcus faecium Com12]
gi|293378171|ref|ZP_06624340.1| ribonuclease HIII [Enterococcus faecium PC4.1]
gi|431033422|ref|ZP_19491268.1| ribonuclease HIII [Enterococcus faecium E1590]
gi|431757248|ref|ZP_19545879.1| ribonuclease HIII [Enterococcus faecium E3083]
gi|257822788|gb|EEV49720.1| ribonuclease HIII [Enterococcus faecium 1,141,733]
gi|257831865|gb|EEV58286.1| ribonuclease HIII [Enterococcus faecium Com12]
gi|292643035|gb|EFF61176.1| ribonuclease HIII [Enterococcus faecium PC4.1]
gi|430564523|gb|ELB03707.1| ribonuclease HIII [Enterococcus faecium E1590]
gi|430619537|gb|ELB56364.1| ribonuclease HIII [Enterococcus faecium E3083]
Length = 305
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D I KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-ILKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|419718973|ref|ZP_14246267.1| ribonuclease HII [Lachnoanaerobaculum saburreum F0468]
gi|383304842|gb|EIC96233.1| ribonuclease HII [Lachnoanaerobaculum saburreum F0468]
Length = 214
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+V PKD L DSK +TEK+RD + D I +E
Sbjct: 32 IAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLN-----DSKKVTEKRRDVLFDRIKQE-- 84
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + + I S +I + ++ + +++A I+K+
Sbjct: 85 ALAYGIGIASNGLI-------DEINILQATYEAMREAIKKL------------------- 118
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
KK +I L++ D T VG K D+ + AASI AKV+RD +
Sbjct: 119 ---KKTPDI---LLVDAVHIPDITIRQVGIV---KGDARSVNIAAASILAKVTRDRLMLE 169
Query: 222 W 222
+
Sbjct: 170 Y 170
>gi|388469747|ref|ZP_10143956.1| ribonuclease HII [Pseudomonas synxantha BG33R]
gi|388006444|gb|EIK67710.1| ribonuclease HII [Pseudomonas synxantha BG33R]
Length = 206
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 54/195 (27%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
++ V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D
Sbjct: 9 AQAHELVAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDE 63
Query: 96 ICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
IC++ L W + EI N++ +ML Q R V +
Sbjct: 64 ICEKA--LSWHIARAEVEEIDELNILHATMLAMQ----------------RAVEGLHITP 105
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P+ + V S+A K DS P + AASI
Sbjct: 106 KMAMIDGNRCPK--------------LAVPSEA-----------VVKGDSKVPAIAAASI 140
Query: 210 CAKVSRDSALKSWTF 224
AKVSRD + ++
Sbjct: 141 LAKVSRDREMAAFEL 155
>gi|304388999|ref|ZP_07371046.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
gi|421537233|ref|ZP_15983421.1| ribonuclease HII [Neisseria meningitidis 93003]
gi|304337133|gb|EFM03320.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
gi|402319710|gb|EJU55215.1| ribonuclease HII [Neisseria meningitidis 93003]
Length = 194
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I +N
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDTLAEMI--KNQAA 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V +P I SLN + H + + R V V ++++D PE
Sbjct: 60 AWHVSAATPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|347522537|ref|YP_004780108.1| ribonuclease HII [Lactococcus garvieae ATCC 49156]
gi|385833921|ref|YP_005871696.1| ribonuclease HII [Lactococcus garvieae Lg2]
gi|343181105|dbj|BAK59444.1| ribonuclease HII [Lactococcus garvieae ATCC 49156]
gi|343183074|dbj|BAK61412.1| ribonuclease HII [Lactococcus garvieae Lg2]
Length = 292
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 25/218 (11%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE--LLKNLGCADSKALTEKKRDDILD 94
+ Q ++G DE G G GP+V ++ N E+ LLK LG ADSK +T++K I
Sbjct: 73 QQQENIIGTDEVGNGSYFGPLVVVASFV---NAEDVLLLKKLGVADSKKVTDEKIYQIAP 129
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+ + + +VE N + +S S+ H+ AI L+ K ++ ++ + V
Sbjct: 130 QLIENITHVPLIVEPTKYNQVIDS--GYNAVSIKVALHNQAIYLLEKRVSE--SIEYIIV 185
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
D ++Y+K L A+ + KA+ + V +SI A+
Sbjct: 186 DAFTTEKNYQKYLL-------------AEQNRVNGKVTLLPKAEDQFLAVACSSIIARYL 232
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSEN 252
+LK+ + + G + + G+G D V K + +N
Sbjct: 233 FLESLKALSLEAGYTLPS---GAGAASDQVAAKLIRQN 267
>gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 219
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S + GIDEAGRGP+ GP+ G PKD + L DSK L+EK+R+++ + I
Sbjct: 30 SSAFICGIDEAGRGPLAGPVAAGAVILPKD-----CRILYLNDSKKLSEKRREELFEEI- 83
Query: 98 KENAWLGWMVEIISPNVI 115
KE A + W V I +P I
Sbjct: 84 KEKA-VAWSVGIATPARI 100
>gi|431762512|ref|ZP_19551074.1| ribonuclease HIII [Enterococcus faecium E3548]
gi|430625204|gb|ELB61854.1| ribonuclease HIII [Enterococcus faecium E3548]
Length = 305
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D I KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-ILKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKSSAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|418465650|ref|ZP_13036584.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755922|gb|EHK90084.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 199
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 98/241 (40%), Gaps = 61/241 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V + E G ADSK L+EKKR + + I K+
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPQHPVE-----GLADSKTLSEKKRLLLAEEI-KQK 65
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L W + PN I LN + H + + R + + V VD
Sbjct: 66 A-LAWALGRAEPNEIDE---------LN-ILHASMFAMERAIKHLKIQPHFVLVDG---- 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ I P L+I A K D+ P + AASI AKV+RD
Sbjct: 111 -------NRIPPNLMIP-------------AQAVVKGDALVPEISAASILAKVARD---- 146
Query: 221 SWTFQEGIQIENN------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
QE I+++ A GYP TK L + + FG R S++ K+L
Sbjct: 147 ----QEMIELDKKYPPYEFAKHKGYP----TKLHLEKLRE--FGVLPEYRRSFAPVKKLL 196
Query: 275 K 275
K
Sbjct: 197 K 197
>gi|416159282|ref|ZP_11605747.1| ribonuclease HII [Neisseria meningitidis N1568]
gi|433472573|ref|ZP_20429943.1| ribonuclease HII family protein [Neisseria meningitidis 97021]
gi|433480999|ref|ZP_20438271.1| ribonuclease HII family protein [Neisseria meningitidis 2006087]
gi|433483121|ref|ZP_20440359.1| ribonuclease HII family protein [Neisseria meningitidis 2002038]
gi|433485221|ref|ZP_20442427.1| ribonuclease HII family protein [Neisseria meningitidis 97014]
gi|325129110|gb|EGC51959.1| ribonuclease HII [Neisseria meningitidis N1568]
gi|432212457|gb|ELK68395.1| ribonuclease HII family protein [Neisseria meningitidis 97021]
gi|432219352|gb|ELK75199.1| ribonuclease HII family protein [Neisseria meningitidis 2006087]
gi|432223567|gb|ELK79347.1| ribonuclease HII family protein [Neisseria meningitidis 2002038]
gi|432224681|gb|ELK80444.1| ribonuclease HII family protein [Neisseria meningitidis 97014]
Length = 194
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I +N +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDALAEMI--KNQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V +P I SLN + H + + R V V +++D PE
Sbjct: 60 AWHVAAATPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|430835416|ref|ZP_19453406.1| ribonuclease HIII [Enterococcus faecium E0680]
gi|430489407|gb|ELA66021.1| ribonuclease HIII [Enterococcus faecium E0680]
Length = 305
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 79 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 136
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K IA
Sbjct: 137 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-K 192
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 193 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 239
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 240 IISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|430882569|ref|ZP_19484117.1| ribonuclease HIII [Enterococcus faecium E1575]
gi|430556814|gb|ELA96309.1| ribonuclease HIII [Enterococcus faecium E1575]
Length = 305
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITLTS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|393776931|ref|ZP_10365225.1| ribonuclease HII [Ralstonia sp. PBA]
gi|392716288|gb|EIZ03868.1| ribonuclease HII [Ralstonia sp. PBA]
Length = 216
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 59/206 (28%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP+ GP+V D + G ADSKALT K+R + D I + L
Sbjct: 15 GVDEAGRGPLAGPVVAAAVIL--DPARPI---AGLADSKALTAKRRAALFDEI--QTRAL 67
Query: 104 GWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
W + EI N++ +ML Q+ + ++A+G+ V VD
Sbjct: 68 AWHIAEASVEEIDQLNILHATMLAMQRA-------------VHGILASGIEPDLVQVDGN 114
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD- 216
P+ P AI K D+ + AASI AKVSRD
Sbjct: 115 RCPQ------------------------IPCRVEAIV-KGDALVQAISAASILAKVSRDR 149
Query: 217 --SALKSWTFQEGIQIENNAWGSGYP 240
+AL + + G + +GYP
Sbjct: 150 QLTALHALHPEYGFDVH-----AGYP 170
>gi|430841859|ref|ZP_19459776.1| ribonuclease HIII [Enterococcus faecium E1007]
gi|431741159|ref|ZP_19530066.1| ribonuclease HIII [Enterococcus faecium E2039]
gi|430493677|gb|ELA69968.1| ribonuclease HIII [Enterococcus faecium E1007]
gi|430602270|gb|ELB39848.1| ribonuclease HIII [Enterococcus faecium E2039]
Length = 305
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|346225808|ref|ZP_08846950.1| ribonuclease HII [Anaerophaga thermohalophila DSM 12881]
Length = 210
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 79/203 (38%), Gaps = 47/203 (23%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P V G DEAGRG + GP+V P+D + LL DSK L+EKKRD + I KE
Sbjct: 27 PLVAGCDEAGRGCLAGPVVAAAVILPEDFDHPLLN-----DSKQLSEKKRDLLRTIIEKE 81
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ L W V ++ H+ I I ++ A + + ++ + P
Sbjct: 82 S--LAWAVAMV---------------------HNEEIDQI-NILNASIRAMHLAIEQLKP 117
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
L + + Y K DS Y + AASI AK RD
Sbjct: 118 ------------QPLSLLIDGNRFHPYEKTKHKCIVKGDSIYKCIAAASILAKTHRD--- 162
Query: 220 KSWTFQEGIQIENNAW--GSGYP 240
+ ++ + AW GYP
Sbjct: 163 -EYMVKQHEKYPFYAWDKNKGYP 184
>gi|295706298|ref|YP_003599373.1| ribonuclease HII [Bacillus megaterium DSM 319]
gi|294803957|gb|ADF41023.1| ribonuclease HII [Bacillus megaterium DSM 319]
Length = 255
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D G DSK L+E KR++ + ICK
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPPD-----FFLPGLTDSKKLSEAKREEFYEEICKSAV 127
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G + II VI + + Y + + AI L+ V E+ +D + P
Sbjct: 128 AIG--IGIIDAEVIDSINI----YEATKKAMTEAIELL------AVQPDELLIDAMKLP- 174
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+ +I K D+T + A+S+ AKV+RD +K
Sbjct: 175 ------------------------VPISQQSII-KGDATSISIAASSVIAKVTRDRMMK 208
>gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048]
gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196]
gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621]
gi|423489013|ref|ZP_17465695.1| ribonuclease HII [Bacillus cereus BtB2-4]
gi|423494738|ref|ZP_17471382.1| ribonuclease HII [Bacillus cereus CER057]
gi|423498470|ref|ZP_17475087.1| ribonuclease HII [Bacillus cereus CER074]
gi|423592167|ref|ZP_17568198.1| ribonuclease HII [Bacillus cereus VD048]
gi|423598852|ref|ZP_17574852.1| ribonuclease HII [Bacillus cereus VD078]
gi|423661323|ref|ZP_17636492.1| ribonuclease HII [Bacillus cereus VDM022]
gi|423669411|ref|ZP_17644440.1| ribonuclease HII [Bacillus cereus VDM034]
gi|423674410|ref|ZP_17649349.1| ribonuclease HII [Bacillus cereus VDM062]
gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621]
gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196]
gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048]
gi|401150831|gb|EJQ58283.1| ribonuclease HII [Bacillus cereus CER057]
gi|401160519|gb|EJQ67897.1| ribonuclease HII [Bacillus cereus CER074]
gi|401232300|gb|EJR38802.1| ribonuclease HII [Bacillus cereus VD048]
gi|401237122|gb|EJR43579.1| ribonuclease HII [Bacillus cereus VD078]
gi|401298538|gb|EJS04138.1| ribonuclease HII [Bacillus cereus VDM034]
gi|401301364|gb|EJS06953.1| ribonuclease HII [Bacillus cereus VDM022]
gi|401309961|gb|EJS15294.1| ribonuclease HII [Bacillus cereus VDM062]
gi|402432261|gb|EJV64320.1| ribonuclease HII [Bacillus cereus BtB2-4]
Length = 257
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKEHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V IISP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIISPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|423367881|ref|ZP_17345313.1| ribonuclease HII [Bacillus cereus VD142]
gi|401082742|gb|EJP91007.1| ribonuclease HII [Bacillus cereus VD142]
Length = 257
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKEHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V IISP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIISPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|262200028|ref|YP_003271237.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365]
gi|262083375|gb|ACY19344.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365]
Length = 246
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 36/231 (15%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKAL--TEKKRDDILDSICKENA 101
GIDEAGRGPVLGPMV A C L G DSKA + K R + + +A
Sbjct: 19 GIDEAGRGPVLGPMVM-AAVCLDSGGARWLTRTGVRDSKAFGASSKARSARAELAAEVSA 77
Query: 102 -WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT-VGP 159
+ V++I VI R +++ LN L+ + IA + R VD +
Sbjct: 78 RAVHAEVQVIDVAVIDR---RVRRHELN---------LLEREIAEQLIARAPAVDAIIAD 125
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
++ + LS+ +P L ++ + V AASI AK RD L
Sbjct: 126 GKNLFRPLSQRYPHL-----------------EACDGGEARHASVAAASILAKHRRDE-L 167
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
+ Q + G GY + T++FL +++ P R SW A
Sbjct: 168 FACIAQRYQPLFGELRGGGYVNE-ATRRFLRAHVERFGRLPPEARRSWPYA 217
>gi|388543718|ref|ZP_10147008.1| ribonuclease HII [Pseudomonas sp. M47T1]
gi|388278275|gb|EIK97847.1| ribonuclease HII [Pseudomonas sp. M47T1]
Length = 213
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 64/246 (26%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N + G DSK LTE KR+ + D IC++
Sbjct: 18 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIQ---GLNDSKKLTEAKRERLFDEICEKA- 71
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI + N++ +ML Q R V + + +D
Sbjct: 72 -LSWHIARAEVEEIDALNILHATMLAMQ----------------RAVEGLHITPKMALID 114
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + A PVV + D+ P + AASI AKVSR
Sbjct: 115 ------------GNRCPKLAVPSA-------PVV------QGDAKVPAIAAASILAKVSR 149
Query: 216 DSALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
D + ++ G I + GYP PV + L+ G + R S++ +
Sbjct: 150 DREMAAFELIYPGYGIGGH---KGYP-TPVHLEALAR-----LGPTPIHRRSFAPVRQAY 200
Query: 275 KEKAVL 280
+ +A+L
Sbjct: 201 EARAML 206
>gi|330445159|ref|ZP_08308811.1| ribonuclease HII family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489350|dbj|GAA03308.1| ribonuclease HII family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 203
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ G+DE GRGP++G +V +N E G DSK LTEKKR+ + D I KE
Sbjct: 17 CIAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLTDSKKLTEKKRNLLFDEI-KEK 70
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L W S+ R + ++E++ A + + AG++++ +V G
Sbjct: 71 A-LSW------------SLGRCEADEIDELNILQATMVAMQRAVAGLHIQPDFVLIDG-- 115
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
PEL P+ A+ K D + AASI AKV+RD +
Sbjct: 116 --------NKVPEL------------PMAAQAVV-KGDLRVAEISAASIIAKVTRDREM- 153
Query: 221 SWTFQEGIQIENNAWG----SGYP 240
E + E +G GYP
Sbjct: 154 -----EALDAEYPQYGFAKHKGYP 172
>gi|312959406|ref|ZP_07773923.1| ribonuclease HII [Pseudomonas fluorescens WH6]
gi|311286123|gb|EFQ64687.1| ribonuclease HII [Pseudomonas fluorescens WH6]
Length = 210
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 54/195 (27%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
++ V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D
Sbjct: 13 AQAHELVAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDE 67
Query: 96 ICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
IC++ L W + EI N++ +ML Q R V +
Sbjct: 68 ICEKA--LSWHIARAEVEEIDQLNILHATMLAMQ----------------RAVEGLHITP 109
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P+ + + S+A K DS P + AASI
Sbjct: 110 KMAMIDGNRCPK--------------LAMPSEA-----------VVKGDSKVPAIAAASI 144
Query: 210 CAKVSRDSALKSWTF 224
AKVSRD + ++
Sbjct: 145 LAKVSRDREMAAFEL 159
>gi|373857306|ref|ZP_09600048.1| Ribonuclease H [Bacillus sp. 1NLA3E]
gi|372452956|gb|EHP26425.1| Ribonuclease H [Bacillus sp. 1NLA3E]
Length = 255
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 76/180 (42%), Gaps = 43/180 (23%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ GIDE GRGP+ GP+V P+D LL G DSK LTE KR++ D I +
Sbjct: 73 LIAGIDEVGRGPLAGPVVAAAVILPEDF---LL--FGIDDSKKLTETKREEYYDQIMAKA 127
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ + ISP I N ++ E + A + + + A
Sbjct: 128 --ISVSIGSISPEEIDN-------INIYEATKKAMLAAVSGLDTA--------------- 163
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+ ++ A K S YP AI K D+ + AASI AKV+RD +K
Sbjct: 164 -----------PDFLLIDAMKLTSPYPY--EAII-KGDAKSISIAAASIVAKVTRDRLMK 209
>gi|431112288|ref|ZP_19497664.1| ribonuclease HIII [Enterococcus faecium E1613]
gi|430569242|gb|ELB08259.1| ribonuclease HIII [Enterococcus faecium E1613]
Length = 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITL---PLGAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|431077721|ref|ZP_19495186.1| ribonuclease HIII [Enterococcus faecium E1604]
gi|430566136|gb|ELB05257.1| ribonuclease HIII [Enterococcus faecium E1604]
Length = 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITL---PLGAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|431514074|ref|ZP_19516122.1| ribonuclease HIII [Enterococcus faecium E1634]
gi|430586330|gb|ELB24591.1| ribonuclease HIII [Enterococcus faecium E1634]
Length = 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|357038747|ref|ZP_09100544.1| Ribonuclease H [Desulfotomaculum gibsoniae DSM 7213]
gi|355359539|gb|EHG07301.1| Ribonuclease H [Desulfotomaculum gibsoniae DSM 7213]
Length = 263
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 51/213 (23%)
Query: 18 RSNDNSRNLIISSTIPESCKSQPC--VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN 75
+ NDN R L S K C V G+DEAGRGP+ GP+V P+ LL++
Sbjct: 50 KQNDNFRRLERMKVYERSLKKPGCGIVAGVDEAGRGPLAGPVVAAAVILPE---VFLLED 106
Query: 76 LGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAA 135
L DSK + +R LD++ K+ A L W V I + N I L + H
Sbjct: 107 LD--DSKKIAPVRRAK-LDTVIKKTA-LAWSVGISTVNEI----------DLYNIHHATM 152
Query: 136 IGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIAS 195
+ ++R + + ++ PEL++ D + + I
Sbjct: 153 LAMLRALNSL-----------------------DMRPELVLI-----DGRFTLPDTNIDQ 184
Query: 196 KA----DSTYPVVGAASICAKVSRDSALKSWTF 224
KA D P + AAS+ AKV+RD ++ +
Sbjct: 185 KAIVGGDGLCPSIAAASVVAKVTRDRLMQIYHL 217
>gi|392548420|ref|ZP_10295557.1| RNAse HII [Pseudoalteromonas rubra ATCC 29570]
Length = 197
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 93/243 (38%), Gaps = 64/243 (26%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP++G +V N G ADSK LTEKKR
Sbjct: 11 IAGVDEVGRGPLVGDVVTAAVILDPAN-----PIAGLADSKKLTEKKR------------ 53
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+ E I +C + R ++E++ H + + R V V + V+VD
Sbjct: 54 --LLLAEEIKQKALCYHVARATVSEIDELNILHATMLAMTRAVEGLAVKAQFVFVD---- 107
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
PEL V A K DS + AASI AKV+RD
Sbjct: 108 --------GNRLPEL-------------SVPAQAVVKGDSLVAEISAASILAKVTRD--- 143
Query: 220 KSWTFQEGIQIENN--AWG-SGYPGDPVTKKF--LSENIDPVFGFPQLVRFSWSTASKIL 274
QE + ++ +G + + G P F LSE FG R S+ +IL
Sbjct: 144 -----QEMLDLDKEYPQYGFAAHKGYPTKAHFAALSE-----FGATPHHRTSFKPVQRIL 193
Query: 275 KEK 277
EK
Sbjct: 194 AEK 196
>gi|381337119|ref|YP_005174894.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
J18]
gi|356645085|gb|AET30928.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
J18]
Length = 303
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 42/250 (16%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK 74
+ I S D + + +T+P + VLG DE G G GP+ Y ++ N E ++
Sbjct: 67 NSIHSLDTPKKM--GTTLPADF-ANWSVLGSDEVGAGAYFGPLTTAAVYVSQE-NLEWVR 122
Query: 75 NLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYS-------- 126
LG ADSK LT+ + I I + P+ + N L +KY+
Sbjct: 123 ALGIADSKTLTDDRMKKIAPQIIAK-----------LPHHVVN--LMPEKYNQLQPLHNV 169
Query: 127 --LNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADS 184
+ +SH+ A+G + I + + + +D +Y L + II ++
Sbjct: 170 NQMKAISHNFALGKVLDKIFP-ITPQAILIDQFAQQSTYFNYLKNAKQQRIIH-----EN 223
Query: 185 TYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPV 244
Y +K + + V AASI A+V A+ + + GI++ G+G D V
Sbjct: 224 VY------FTTKGEQYHLSVAAASILARVVELDAMSKLSVEAGIKLP---IGAGREVDTV 274
Query: 245 TKKFLSENID 254
+ L ID
Sbjct: 275 AAELLRRGID 284
>gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
gi|343484489|dbj|BAJ50143.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
Length = 189
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRG V+GP+V +D LL+ LG ADSK L+ ++R++I + + + + +
Sbjct: 4 GVDEAGRGCVVGPLVVAAVAAERD-ELPLLRALGVADSKTLSPRRREEIFEKL-RASFRV 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
G+M ++SP I + + LN++ + L R R ++VD+ P
Sbjct: 62 GYM--LVSPRRISSCLRVNGGDGLNDLEYGVMAELARS-----FRPRILFVDS--PDRDV 112
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
++ + +L + + + + D + +V AAS+ AKV RD +
Sbjct: 113 RRARRRLLEKLGVEMDVRC-----------MVRGDRRHVLVAAASVVAKVVRDRKVAMLR 161
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
+ G +GSGYP DP S +D
Sbjct: 162 RRLG------DFGSGYPSDPRHGNGFSRTLD 186
>gi|313901245|ref|ZP_07834733.1| ribonuclease HII [Clostridium sp. HGF2]
gi|373121386|ref|ZP_09535254.1| hypothetical protein HMPREF0982_00183 [Erysipelotrichaceae
bacterium 21_3]
gi|422327402|ref|ZP_16408429.1| hypothetical protein HMPREF0981_01749 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954203|gb|EFR35883.1| ribonuclease HII [Clostridium sp. HGF2]
gi|371663242|gb|EHO28432.1| hypothetical protein HMPREF0981_01749 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665404|gb|EHO30569.1| hypothetical protein HMPREF0982_00183 [Erysipelotrichaceae
bacterium 21_3]
Length = 207
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 47/187 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGT-AYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
C++GIDEAGRGP+ GP+V A+ P ++ E+ DSK L++KKR + + +
Sbjct: 18 CIVGIDEAGRGPIAGPLVVAAVAFPPGYSHPEIY------DSKKLSDKKRRALFHEVVAQ 71
Query: 100 NAWLGWMVEIISPNVICN-SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
L + + II P +I ++ R + ++ ++S A + V D +
Sbjct: 72 A--LEYHIRIIEPKIIDELNIYRATQRAMQDISDMFA------------HADGVLTDAMP 117
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P + + +S + K D + AASI AKV+RD
Sbjct: 118 LPHNERDVISLV-------------------------KGDQKSVSIAAASILAKVTRDCM 152
Query: 219 LKSWTFQ 225
++++ Q
Sbjct: 153 MEAYDRQ 159
>gi|423511871|ref|ZP_17488402.1| ribonuclease HII [Bacillus cereus HuA2-1]
gi|402450132|gb|EJV81966.1| ribonuclease HII [Bacillus cereus HuA2-1]
Length = 257
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKEHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V IISP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIISPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|431586440|ref|ZP_19520955.1| ribonuclease HIII [Enterococcus faecium E1861]
gi|430593618|gb|ELB31604.1| ribonuclease HIII [Enterococcus faecium E1861]
Length = 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 27/237 (11%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
++ S L + + GI + G+G D + K L + G P L +++
Sbjct: 241 ISRASFLEELDKASAEAGITL---PLGAGTKSDQIAAKLLEKG-----GMPMLEKYA 289
>gi|372271433|ref|ZP_09507481.1| Ribonuclease H [Marinobacterium stanieri S30]
Length = 202
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DE GRGP++G +V DN E G ADSKALTEKKR+ + I KE A L
Sbjct: 16 GVDEVGRGPLIGDVVAAAVILDPDNPIE-----GLADSKALTEKKRERLYGEI-KEKA-L 68
Query: 104 GWMVEIISP------NVICNSMLRRQK 124
W V +P N++ SML Q+
Sbjct: 69 AWCVAAATPAEIDELNILHASMLAMQR 95
>gi|293570968|ref|ZP_06682012.1| ribonuclease hiii [Enterococcus faecium E980]
gi|431737008|ref|ZP_19525964.1| ribonuclease HIII [Enterococcus faecium E1972]
gi|291608952|gb|EFF38230.1| ribonuclease hiii [Enterococcus faecium E980]
gi|430599384|gb|ELB37090.1| ribonuclease HIII [Enterococcus faecium E1972]
Length = 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 103/246 (41%), Gaps = 24/246 (9%)
Query: 30 STIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKR 89
S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 80 SSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQI 137
Query: 90 DDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
+ D + KE + + + ++ P + + H+ AI L+ K IA
Sbjct: 138 IQLAD-VLKET--IPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPE-KP 193
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P ++KK ++ + + +K + + V AASI
Sbjct: 194 EAILIDQFTPEANFKK-------------YARLEKNHLQEKLYFVTKGEQYHLAVAAASI 240
Query: 210 CAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
++ S L + + GI + + G+G D + K L + P+ + + ++
Sbjct: 241 ISRASFLEELDKASAEAGITLPS---GAGTKSDQIAAKLLEKGGMPI--LEKYAKLHFAN 295
Query: 270 ASKILK 275
K LK
Sbjct: 296 TEKALK 301
>gi|420143409|ref|ZP_14650907.1| Ribonuclease HIII (RNase HIII) [Lactococcus garvieae IPLA 31405]
gi|391856636|gb|EIT67175.1| Ribonuclease HIII (RNase HIII) [Lactococcus garvieae IPLA 31405]
Length = 292
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 25/218 (11%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEE--LLKNLGCADSKALTEKKRDDILD 94
+ Q ++G DE G G GP+V ++ N E+ LLK LG +DSK +T++K I
Sbjct: 73 QQQENIIGTDEVGNGSYFGPLVVVASFV---NAEDVLLLKKLGVSDSKKVTDEKIYQIAP 129
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+ + + +VE N + +S S+ H+ AI L+ K ++ ++ + V
Sbjct: 130 QLIENITHVPLIVEPTKYNQVIDSGYN--AVSIKVALHNQAIYLLEKRVSE--SIEYIIV 185
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
D ++Y+K L F E ++ + + KA+ + V +SI A+
Sbjct: 186 DAFTTEKNYQKYL---FAE-----QNRVNGK-----VTLLPKAEDQFLAVACSSIIARYL 232
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSEN 252
+LK+ + + G + + G+G D V K + +N
Sbjct: 233 FLESLKALSLEAGYTLPS---GAGAASDQVAAKLIRQN 267
>gi|423127499|ref|ZP_17115178.1| ribonuclease HII [Klebsiella oxytoca 10-5250]
gi|376394538|gb|EHT07188.1| ribonuclease HII [Klebsiella oxytoca 10-5250]
Length = 198
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 48/214 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP++G +V TA D + + LG ADSK L+EK+R + D I KE A
Sbjct: 12 VAGVDEVGRGPLVGAVV--TAAVILDPAKPI---LGLADSKKLSEKRRLALFDEI-KEKA 65
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+C S+ R + + ++E++ H + + R V AG++
Sbjct: 66 -------------LCWSLGRAEPHEIDELNILHATMLAMQRAV--AGLS----------- 99
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
I PE ++ ++ PV A+ K DS + AASI AKV+RD+ +
Sbjct: 100 ----------ISPEFVLIDGNRC-PPLPVPSLAVV-KGDSRVAEISAASILAKVTRDAEM 147
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
A GYP +K L +
Sbjct: 148 A--VLDREFPQYGFAQHKGYPTAFHLQKLLEHGV 179
>gi|15674239|ref|NP_268414.1| ribonuclease HIII [Lactococcus lactis subsp. lactis Il1403]
gi|281492933|ref|YP_003354913.1| ribonuclease HIII [Lactococcus lactis subsp. lactis KF147]
gi|20978735|sp|Q9CDG3.1|RNH3_LACLA RecName: Full=Ribonuclease HIII; Short=RNase HIII
gi|12725328|gb|AAK06355.1|AE006455_1 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403]
gi|281376585|gb|ADA66071.1| Ribonuclease HIII [Lactococcus lactis subsp. lactis KF147]
Length = 292
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
I+ +P+ Q ++G DE G G G ++ ++ ++N LK +G ADSK LT++
Sbjct: 67 IAQVVPQK---QTNLIGTDEVGNGSYFGGLMVTASFVSEEN-LNFLKEIGVADSKKLTDE 122
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
K I + + +VE N + S S+ H+ AI L+ K + G
Sbjct: 123 KICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNA--VSIKVALHNQAIYLLEKQL--GH 178
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ +D +YKK +++ + +P+ + +KA+ + V +
Sbjct: 179 KPENIVIDAFTTEANYKKYVNK-------------EQNHPLTKVTLLTKAEDQFLAVAVS 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL-SENIDPVFGFPQLVRFS 266
SI ++ LK + + G + + G+G D + + + S+ +D QL +
Sbjct: 226 SIISRYLFLENLKKLSKESGFTLPS---GAGNLSDKIAAQIIKSQGVD---ALNQLAKLH 279
Query: 267 WSTASKILK 275
++ K +K
Sbjct: 280 FANTQKAIK 288
>gi|24373211|ref|NP_717254.1| ribonuclease HII RnhB [Shewanella oneidensis MR-1]
gi|39932406|sp|Q8EGG1.1|RNH2_SHEON RecName: Full=Ribonuclease HII; Short=RNase HII
gi|24347435|gb|AAN54698.1| ribonuclease HII RnhB [Shewanella oneidensis MR-1]
Length = 209
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S V G+DE GRGP++G +V TA D N +L G DSK LTEK+R+ + D IC
Sbjct: 16 STSLVAGVDEVGRGPLVGDVV--TAAVILDPNRPIL---GLNDSKKLTEKRREALFDEIC 70
Query: 98 KENAWLGWMVEIISP------NVICNSMLRRQK 124
++ L + V SP N++ +ML Q+
Sbjct: 71 EK--ALSFHVGRASPAEIDELNILHATMLAMQR 101
>gi|218767115|ref|YP_002341627.1| ribonuclease HII [Neisseria meningitidis Z2491]
gi|385338908|ref|YP_005892781.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594]
gi|421549753|ref|ZP_15995763.1| ribonuclease HII [Neisseria meningitidis 69166]
gi|421553942|ref|ZP_15999893.1| ribonuclease HII [Neisseria meningitidis 98008]
gi|433470384|ref|ZP_20427784.1| ribonuclease HII family protein [Neisseria meningitidis 68094]
gi|433474668|ref|ZP_20432016.1| ribonuclease HII family protein [Neisseria meningitidis 88050]
gi|433476771|ref|ZP_20434099.1| ribonuclease HII family protein [Neisseria meningitidis 70012]
gi|433478971|ref|ZP_20436270.1| ribonuclease HII family protein [Neisseria meningitidis 63041]
gi|433512552|ref|ZP_20469354.1| ribonuclease HII family protein [Neisseria meningitidis 63049]
gi|433514682|ref|ZP_20471458.1| ribonuclease HII family protein [Neisseria meningitidis 2004090]
gi|433516779|ref|ZP_20473533.1| ribonuclease HII family protein [Neisseria meningitidis 96023]
gi|433518972|ref|ZP_20475699.1| ribonuclease HII family protein [Neisseria meningitidis 65014]
gi|433520981|ref|ZP_20477683.1| ribonuclease HII family protein [Neisseria meningitidis 61103]
gi|433523049|ref|ZP_20479722.1| ribonuclease HII family protein [Neisseria meningitidis 97020]
gi|433525278|ref|ZP_20481924.1| ribonuclease HII family protein [Neisseria meningitidis 69096]
gi|433527356|ref|ZP_20483969.1| ribonuclease HII family protein [Neisseria meningitidis NM3652]
gi|433529447|ref|ZP_20486047.1| ribonuclease HII family protein [Neisseria meningitidis NM3642]
gi|433531569|ref|ZP_20488138.1| ribonuclease HII family protein [Neisseria meningitidis 2007056]
gi|433533587|ref|ZP_20490136.1| ribonuclease HII family protein [Neisseria meningitidis 2001212]
gi|433537955|ref|ZP_20494442.1| ribonuclease HII family protein [Neisseria meningitidis 70030]
gi|433540127|ref|ZP_20496584.1| ribonuclease HII family protein [Neisseria meningitidis 63006]
gi|11387099|sp|Q9JX40.1|RNH2_NEIMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|121051123|emb|CAM07394.1| ribonuclease HII [Neisseria meningitidis Z2491]
gi|319411322|emb|CBY91733.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594]
gi|402331704|gb|EJU67036.1| ribonuclease HII [Neisseria meningitidis 69166]
gi|402333978|gb|EJU69273.1| ribonuclease HII [Neisseria meningitidis 98008]
gi|432211817|gb|ELK67761.1| ribonuclease HII family protein [Neisseria meningitidis 68094]
gi|432212728|gb|ELK68663.1| ribonuclease HII family protein [Neisseria meningitidis 88050]
gi|432217924|gb|ELK73789.1| ribonuclease HII family protein [Neisseria meningitidis 70012]
gi|432218945|gb|ELK74797.1| ribonuclease HII family protein [Neisseria meningitidis 63041]
gi|432250307|gb|ELL05702.1| ribonuclease HII family protein [Neisseria meningitidis 63049]
gi|432256346|gb|ELL11669.1| ribonuclease HII family protein [Neisseria meningitidis 2004090]
gi|432256571|gb|ELL11893.1| ribonuclease HII family protein [Neisseria meningitidis 96023]
gi|432256937|gb|ELL12248.1| ribonuclease HII family protein [Neisseria meningitidis 65014]
gi|432262765|gb|ELL18000.1| ribonuclease HII family protein [Neisseria meningitidis 61103]
gi|432262922|gb|ELL18153.1| ribonuclease HII family protein [Neisseria meningitidis 97020]
gi|432263426|gb|ELL18646.1| ribonuclease HII family protein [Neisseria meningitidis 69096]
gi|432267425|gb|ELL22603.1| ribonuclease HII family protein [Neisseria meningitidis NM3652]
gi|432269589|gb|ELL24746.1| ribonuclease HII family protein [Neisseria meningitidis 2007056]
gi|432270098|gb|ELL25245.1| ribonuclease HII family protein [Neisseria meningitidis NM3642]
gi|432274140|gb|ELL29233.1| ribonuclease HII family protein [Neisseria meningitidis 2001212]
gi|432276095|gb|ELL31157.1| ribonuclease HII family protein [Neisseria meningitidis 70030]
gi|432278108|gb|ELL33152.1| ribonuclease HII family protein [Neisseria meningitidis 63006]
Length = 194
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I +N +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDALAEMI--KNQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V P I SLN + H + + R V V ++++D PE
Sbjct: 60 AWHVAAAGPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|314938144|ref|ZP_07845449.1| ribonuclease HIII [Enterococcus faecium TX0133a04]
gi|314943815|ref|ZP_07850550.1| ribonuclease HIII [Enterococcus faecium TX0133C]
gi|314949774|ref|ZP_07853084.1| ribonuclease HIII [Enterococcus faecium TX0082]
gi|314951182|ref|ZP_07854240.1| ribonuclease HIII [Enterococcus faecium TX0133A]
gi|314994413|ref|ZP_07859697.1| ribonuclease HIII [Enterococcus faecium TX0133B]
gi|314995609|ref|ZP_07860703.1| ribonuclease HIII [Enterococcus faecium TX0133a01]
gi|389869289|ref|YP_006376712.1| ribonuclease HIII [Enterococcus faecium DO]
gi|424789893|ref|ZP_18216503.1| ribonuclease HIII [Enterococcus faecium V689]
gi|424819501|ref|ZP_18244592.1| ribonuclease HIII [Enterococcus faecium R501]
gi|424912752|ref|ZP_18336127.1| ribonuclease HIII [Enterococcus faecium R497]
gi|424955440|ref|ZP_18370276.1| ribonuclease HIII [Enterococcus faecium R494]
gi|424964243|ref|ZP_18378356.1| ribonuclease HIII [Enterococcus faecium P1190]
gi|424970083|ref|ZP_18383620.1| ribonuclease HIII [Enterococcus faecium P1139]
gi|424974780|ref|ZP_18387995.1| ribonuclease HIII [Enterococcus faecium P1137]
gi|424978197|ref|ZP_18391142.1| ribonuclease HIII [Enterococcus faecium P1123]
gi|424980294|ref|ZP_18393096.1| ribonuclease HIII [Enterococcus faecium ERV99]
gi|424983598|ref|ZP_18396179.1| ribonuclease HIII [Enterococcus faecium ERV69]
gi|424987920|ref|ZP_18400271.1| ribonuclease HIII [Enterococcus faecium ERV38]
gi|424991799|ref|ZP_18403930.1| ribonuclease HIII [Enterococcus faecium ERV26]
gi|425007014|ref|ZP_18418165.1| ribonuclease HIII [Enterococcus faecium ERV1]
gi|425016054|ref|ZP_18426641.1| ribonuclease HIII [Enterococcus faecium E417]
gi|425021057|ref|ZP_18431336.1| ribonuclease HIII [Enterococcus faecium C497]
gi|425024156|ref|ZP_18434242.1| ribonuclease HIII [Enterococcus faecium C1904]
gi|425035145|ref|ZP_18439996.1| ribonuclease HIII [Enterococcus faecium 514]
gi|425039212|ref|ZP_18443770.1| ribonuclease HIII [Enterococcus faecium 513]
gi|425041476|ref|ZP_18445869.1| ribonuclease HIII [Enterococcus faecium 511]
gi|425046566|ref|ZP_18450573.1| ribonuclease HIII [Enterococcus faecium 510]
gi|425049150|ref|ZP_18453018.1| ribonuclease HIII [Enterococcus faecium 509]
gi|425052195|ref|ZP_18455820.1| ribonuclease HIII [Enterococcus faecium 506]
gi|425060409|ref|ZP_18463704.1| ribonuclease HIII [Enterococcus faecium 503]
gi|313590197|gb|EFR69042.1| ribonuclease HIII [Enterococcus faecium TX0133a01]
gi|313591185|gb|EFR70030.1| ribonuclease HIII [Enterococcus faecium TX0133B]
gi|313596661|gb|EFR75506.1| ribonuclease HIII [Enterococcus faecium TX0133A]
gi|313597539|gb|EFR76384.1| ribonuclease HIII [Enterococcus faecium TX0133C]
gi|313642491|gb|EFS07071.1| ribonuclease HIII [Enterococcus faecium TX0133a04]
gi|313643847|gb|EFS08427.1| ribonuclease HIII [Enterococcus faecium TX0082]
gi|388534538|gb|AFK59730.1| Ribonuclease HIII [Enterococcus faecium DO]
gi|402921427|gb|EJX41873.1| ribonuclease HIII [Enterococcus faecium V689]
gi|402926156|gb|EJX46218.1| ribonuclease HIII [Enterococcus faecium R501]
gi|402927681|gb|EJX47621.1| ribonuclease HIII [Enterococcus faecium R497]
gi|402934064|gb|EJX53457.1| ribonuclease HIII [Enterococcus faecium R494]
gi|402947094|gb|EJX65324.1| ribonuclease HIII [Enterococcus faecium P1190]
gi|402955529|gb|EJX73051.1| ribonuclease HIII [Enterococcus faecium P1137]
gi|402962708|gb|EJX79626.1| ribonuclease HIII [Enterococcus faecium P1139]
gi|402962929|gb|EJX79832.1| ribonuclease HIII [Enterococcus faecium P1123]
gi|402966831|gb|EJX83436.1| ribonuclease HIII [Enterococcus faecium ERV99]
gi|402971217|gb|EJX87506.1| ribonuclease HIII [Enterococcus faecium ERV69]
gi|402973403|gb|EJX89532.1| ribonuclease HIII [Enterococcus faecium ERV38]
gi|402975826|gb|EJX91755.1| ribonuclease HIII [Enterococcus faecium ERV26]
gi|402993520|gb|EJY08120.1| ribonuclease HIII [Enterococcus faecium E417]
gi|402995901|gb|EJY10317.1| ribonuclease HIII [Enterococcus faecium ERV1]
gi|403007749|gb|EJY21297.1| ribonuclease HIII [Enterococcus faecium C497]
gi|403007867|gb|EJY21414.1| ribonuclease HIII [Enterococcus faecium C1904]
gi|403017156|gb|EJY29932.1| ribonuclease HIII [Enterococcus faecium 513]
gi|403018755|gb|EJY31415.1| ribonuclease HIII [Enterococcus faecium 514]
gi|403024016|gb|EJY36213.1| ribonuclease HIII [Enterococcus faecium 510]
gi|403025764|gb|EJY37809.1| ribonuclease HIII [Enterococcus faecium 511]
gi|403028783|gb|EJY40584.1| ribonuclease HIII [Enterococcus faecium 509]
gi|403035236|gb|EJY46634.1| ribonuclease HIII [Enterococcus faecium 506]
gi|403042605|gb|EJY53551.1| ribonuclease HIII [Enterococcus faecium 503]
Length = 313
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 87 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 144
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K I
Sbjct: 145 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPE-K 200
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK ++ + +K + + V AAS
Sbjct: 201 PEAILIDQFTPEANFKK-------------YARLEKNQLQEKLYFVTKGEQYHLAVAAAS 247
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 248 IISRASFLEELHKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 297
>gi|229588817|ref|YP_002870936.1| ribonuclease HII [Pseudomonas fluorescens SBW25]
gi|229360683|emb|CAY47541.1| ribonuclease HII [Pseudomonas fluorescens SBW25]
Length = 206
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 54/195 (27%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
++ V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D
Sbjct: 9 AQAHELVAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDE 63
Query: 96 ICKENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNV 149
IC++ L W + EI N++ +ML Q R V +
Sbjct: 64 ICEKA--LSWHIARAEVEEIDELNILHATMLAMQ----------------RAVEGLHITP 105
Query: 150 REVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASI 209
+ +D P+ + + S+A K DS P + AASI
Sbjct: 106 KMAMIDGNRCPK--------------LAMPSEA-----------VVKGDSKVPAIAAASI 140
Query: 210 CAKVSRDSALKSWTF 224
AKVSRD + ++
Sbjct: 141 LAKVSRDREMAAFEL 155
>gi|421558167|ref|ZP_16004051.1| ribonuclease HII [Neisseria meningitidis 92045]
gi|402338561|gb|EJU73792.1| ribonuclease HII [Neisseria meningitidis 92045]
Length = 194
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I +N
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDTLAEMI--KNQAA 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V +P I SLN + H + + R V V+ ++++D PE
Sbjct: 60 AWHVSAATPEEIA---------SLN-ILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|123966915|ref|YP_001011996.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515]
gi|166226637|sp|A2BYM8.1|RNH2_PROM5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|123201281|gb|ABM72889.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515]
Length = 209
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 74/178 (41%), Gaps = 45/178 (25%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDE GRG V GP V+ A + N LK LG DSK LTEKKR +L
Sbjct: 23 IGIDEVGRGAVFGP-VFSAAVVLTEKNGYTLKQLGVTDSKKLTEKKRKLLL--------- 72
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
P +I S YSL + S R++ G+ Y + +
Sbjct: 73 ---------PKIISLS----SDYSLGQSS-------AREIDQLGIR----YATELSMIRA 108
Query: 163 YKKKLSEIFPELIITVAS----KADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
KK S+ + +I S K+ + G DS + + AASI AKV+RD
Sbjct: 109 IKKLKSKPYEVIIDGPLSLRLWKSHQRNIIAG-------DSKFTSIAAASIVAKVTRD 159
>gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 217
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 56/182 (30%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAGRG GP+V G P++ N L+K DSK L++K+R++ L
Sbjct: 34 IVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIK-----DSKQLSQKQREEAL-------- 80
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
EII N I + + +N +E VD + P +
Sbjct: 81 ------EIILENAI-------------------------ETVTTIINAQE--VDQLNPKQ 107
Query: 162 SYKKKLSEIF------PELIITVASKA-DSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
+ + + PEL+IT K D P + K D V AASI AKV+
Sbjct: 108 ASRIGMQRCINKLNTKPELVITDFEKINDINIPQINLV---KGDQLSINVAAASILAKVT 164
Query: 215 RD 216
RD
Sbjct: 165 RD 166
>gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541]
gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541]
Length = 196
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 75/178 (42%), Gaps = 42/178 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP++G +V +N E G ADSK LTEKKR+ + D I KE A
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLADSKKLTEKKREKLFDEI-KEKA 64
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W + PN I LN + H + + R V + V VD P+
Sbjct: 65 -LCWCIGRAEPNEI---------DELN-ILHATMLAMQRAVAGLSITPEFVLVDGNRCPK 113
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+++ S+A K DS + AASI AKV RD +
Sbjct: 114 --------------LSMPSQA-----------VVKGDSLVQEISAASILAKVVRDREM 146
>gi|440737181|ref|ZP_20916754.1| ribonuclease HII [Pseudomonas fluorescens BRIP34879]
gi|447915650|ref|YP_007396218.1| ribonuclease HII [Pseudomonas poae RE*1-1-14]
gi|440382363|gb|ELQ18867.1| ribonuclease HII [Pseudomonas fluorescens BRIP34879]
gi|445199513|gb|AGE24722.1| ribonuclease HII [Pseudomonas poae RE*1-1-14]
Length = 210
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 80/190 (42%), Gaps = 56/190 (29%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D + +L G DSK LTE +R+ + D IC++
Sbjct: 19 VAGVDEVGRGPLCGAVV--TAAVILDPSRPIL---GLNDSKKLTEARREKLYDEICEKA- 72
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI + N++ +ML Q+ A GL
Sbjct: 73 -LSWHIARAEVEEIDTLNILHATMLAMQR---------AVEGL----------------- 105
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADS-TYPVVGAAIASKADSTYPVVGAASICAKVS 214
I P++ + ++ T P A K DS P + AASI AKVS
Sbjct: 106 -------------HITPKMAMIDGNRCPRLTMP---AEAVVKGDSKVPAIAAASILAKVS 149
Query: 215 RDSALKSWTF 224
RD + ++
Sbjct: 150 RDREMAAFEL 159
>gi|392428769|ref|YP_006469780.1| ribonuclease HII [Streptococcus intermedius JTH08]
gi|419776581|ref|ZP_14302503.1| ribonuclease HII [Streptococcus intermedius SK54]
gi|383845992|gb|EID83392.1| ribonuclease HII [Streptococcus intermedius SK54]
gi|391757915|dbj|BAM23532.1| ribonuclease HII [Streptococcus intermedius JTH08]
Length = 258
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 43/184 (23%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ GIDE GRGP+ GP+V PK++ K G DSK +++KK + I + K+
Sbjct: 71 CIAGIDEVGRGPLAGPVVAAAVILPKNS-----KIKGLNDSKKISKKKHETIYQEVLKQA 125
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+G I N + + + Y +++ A+G ++
Sbjct: 126 IAIGIG---IKDNQVIDEV---NIYEATKLAMIEAVGNLK-------------------- 159
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
I P+ ++ A K D P K D+ + AASI AKV+RD +
Sbjct: 160 ---------ITPQHLLIDAMKLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMT 207
Query: 221 SWTF 224
+
Sbjct: 208 DYDL 211
>gi|384172921|ref|YP_005554298.1| ribonuclease HII [Arcobacter sp. L]
gi|345472531|dbj|BAK73981.1| ribonuclease HII [Arcobacter sp. L]
Length = 190
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 72/177 (40%), Gaps = 54/177 (30%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL-GCADSKALTEKKRDDILDSICKENAW 102
GIDEAGRGP+ GP+V A LL+N+ G DSK LTEKKR+ + + I
Sbjct: 4 GIDEAGRGPIAGPLVVAGAI--------LLENIEGLNDSKVLTEKKREKLFEEI------ 49
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ + KY + V DA + +D G
Sbjct: 50 -----------------IEKSKYHI--VFSDAKM-----------------IDEKGISYC 73
Query: 163 YKKKLSEI---FPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
K + EI E ++++ + KAD+T V AASI AKVSRD
Sbjct: 74 LKNSILEIMEKLKEFSNEFLMDGNTSFGITTLQHKIKADATIKEVSAASILAKVSRD 130
>gi|423470051|ref|ZP_17446795.1| ribonuclease HII [Bacillus cereus BAG6O-2]
gi|402437303|gb|EJV69327.1| ribonuclease HII [Bacillus cereus BAG6O-2]
Length = 257
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKEHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|302380879|ref|ZP_07269341.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
gi|302311257|gb|EFK93276.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
Length = 207
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 40/184 (21%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PK N E+++ G DSK L+EKKR D I N
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMPK--NCEIIE--GVTDSKKLSEKKRIKFKDMIL--NQ 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL-IRKVIAAGVNVREVYVDTVGPP 160
L + V+ + VI +E++ A L ++K +
Sbjct: 68 ALAYSVDFVDQGVI------------DEINIKQATRLSMKKAV----------------- 98
Query: 161 ESYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
ES K K ++ I P+LI+ A + D+ + + + YP + ASI AKV RD +
Sbjct: 99 ESLKTKDNKFIKPDLIVIDAEEIDTD--IKQMSFVKGDEKLYP-ISCASIVAKVIRDEYM 155
Query: 220 KSWT 223
K
Sbjct: 156 KEMA 159
>gi|383790417|ref|YP_005474991.1| ribonuclease HII [Spirochaeta africana DSM 8902]
gi|383106951|gb|AFG37284.1| ribonuclease HII [Spirochaeta africana DSM 8902]
Length = 231
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 18/195 (9%)
Query: 34 ESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
S K Q + G+DEAGRGP+ GP+ P D + L+ DSK LT R +
Sbjct: 5 RSTKPQ-LICGVDEAGRGPLAGPVTAAAVILPPDFPADQLR-----DSKKLTLAGRTRLE 58
Query: 94 DSICKENAWLG----WMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLIRKVIAAGV 147
I +E G W EI N++ +ML Q+ Y L R AA +
Sbjct: 59 SLIRQEATAFGMGWAWPAEIDRINILQAAMLAMQRAVYDLRPPQEHP-----RLDTAALL 113
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+DT+ P + I P+L + ++ + A D + ++ AA
Sbjct: 114 QEPTPPLDTIPPGPDTGRSQPGIRPDLALIDGNRCPDLGDIPCQAEIKGDDRIHQIM-AA 172
Query: 208 SICAKVSRDSALKSW 222
SI AK +RD + +W
Sbjct: 173 SILAKTARDRWMAAW 187
>gi|385323341|ref|YP_005877780.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013]
gi|261391728|emb|CAX49177.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013]
Length = 194
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I +N
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDTLAEMI--KNQAA 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V +P I SLN + H + + R V V+ ++++D PE
Sbjct: 60 AWHVSAATPEEIA---------SLN-ILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|346314322|ref|ZP_08855843.1| ribonuclease HII [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906680|gb|EGX76404.1| ribonuclease HII [Erysipelotrichaceae bacterium 2_2_44A]
Length = 207
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 47/187 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGT-AYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
C++GIDEAGRGP+ GP+V A+ P ++ E+ DSK L++KKR + + +
Sbjct: 18 CIVGIDEAGRGPIAGPLVVAAVAFPPGYSHPEIY------DSKKLSDKKRRALFHEVVAQ 71
Query: 100 NAWLGWMVEIISPNVICN-SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
L + + II P +I ++ R + ++ ++S A + + D +
Sbjct: 72 A--LEYHIRIIEPKIIDELNIYRATQRAMQDISDMFA------------HADGILTDAMP 117
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P + + +S + K D + AASI AKV+RD
Sbjct: 118 LPHNERDVISLV-------------------------KGDQKSVSIAAASILAKVTRDCM 152
Query: 219 LKSWTFQ 225
++++ Q
Sbjct: 153 MEAYDRQ 159
>gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1]
gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1]
Length = 213
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 42/186 (22%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
+ Q V GIDEAGRGP+ GP+V G P+D E L N DSK L+EK+R+ + + I
Sbjct: 27 EDQVLVCGIDEAGRGPLAGPVVAGAVILPRD-CEILFLN----DSKKLSEKRREALFEEI 81
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
++ + + V ++ + R + ++ + +++A ++ A + +
Sbjct: 82 MEKAS--AFAVGVVGAD-------RIDEINILQATYEAM-----RLAVAKLEIE------ 121
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+F +T+ A S P++ K D + AASI AKV+RD
Sbjct: 122 -----------PNVFLNDAVTIPGIAASQVPII------KGDGKSVSIAAASIMAKVTRD 164
Query: 217 SALKSW 222
++ +
Sbjct: 165 HMMEEY 170
>gi|374674329|dbj|BAL52220.1| ribonuclease HIII [Lactococcus lactis subsp. lactis IO-1]
Length = 292
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
I+ +P+ Q ++G DE G G G ++ ++ ++N LK +G ADSK LT++
Sbjct: 67 IAQVVPQK---QTNLIGTDEVGNGSYFGGLMVTASFVSEEN-LNFLKEIGVADSKKLTDE 122
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
K I + + +VE N + S S+ H+ AI L+ K + G
Sbjct: 123 KICQIALKLIDRIPHVALVVEPAKYNEVIAS--GYNAVSIKVALHNQAIYLLEKQL--GH 178
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ +D +YKK +++ + +P+ + +KA+ + V +
Sbjct: 179 KPENIVIDAFTTEANYKKYVNK-------------EQNHPLTTVTLLTKAEDQFLAVAVS 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL-SENIDPVFGFPQLVRFS 266
SI ++ LK + + G + + G+G D + + + S+ +D QL +
Sbjct: 226 SIISRYLFLENLKKLSKESGFTLPS---GAGNLSDKIAAQIIKSQGVD---ALNQLAKLH 279
Query: 267 WSTASKILK 275
++ K +K
Sbjct: 280 FANTQKAIK 288
>gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254]
gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254]
Length = 198
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K V+G+DEAGRGP+ GP+V G +D E L+ + DSK LTEKKR+ + ++I
Sbjct: 6 KYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPE--LQEIN--DSKKLTEKKRERLFEAI 61
Query: 97 CKENAWLGWMV----EIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
K N +G + EI N++ N+ + ++N+V+ +A ++
Sbjct: 62 EK-NCIVGIGIASEKEIDEMNIL-NATFLAMRRAINQVAEKSAFDIV 106
>gi|189911146|ref|YP_001962701.1| ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167775822|gb|ABZ94123.1| Ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
Length = 246
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 25/196 (12%)
Query: 32 IPESCKSQPCVLGIDEAGRGPVLGPMVYG-----TAYCPKDNNEELLKNLGCADSKALTE 86
PE Q DEAGRG + GP+ G + K + +LKNL DSK + E
Sbjct: 14 FPEFQVPQFVPFSFDEAGRGTLAGPVSVGCVSFSSQTLEKIQSGTILKNL--RDSKKIPE 71
Query: 87 KKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG 146
KR ++ I + A+ W V +S I ++++N+ G+ R A
Sbjct: 72 PKRFELRTEILQYAAY--WHVSFVSAKFI-------DRFNINQA---IFYGISR---ALP 116
Query: 147 VNVREV--YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVV 204
VN R+V ++ G P + K + P L + K P+ G K D P +
Sbjct: 117 VNPRQVTGHLHKTGIPLGTQTK-ETLAPFLFVDGNYKLKIHKPIEGYLSIPKGDDLVPSI 175
Query: 205 GAASICAKVSRDSALK 220
AASI AK RD ++
Sbjct: 176 SAASILAKTYRDEYME 191
>gi|424795293|ref|ZP_18221161.1| ribonuclease HIII [Enterococcus faecium S447]
gi|424855052|ref|ZP_18279378.1| ribonuclease HIII [Enterococcus faecium R499]
gi|424950179|ref|ZP_18365351.1| ribonuclease HIII [Enterococcus faecium R496]
gi|424957196|ref|ZP_18371936.1| ribonuclease HIII [Enterococcus faecium R446]
gi|424960030|ref|ZP_18374578.1| ribonuclease HIII [Enterococcus faecium P1986]
gi|424966353|ref|ZP_18380157.1| ribonuclease HIII [Enterococcus faecium P1140]
gi|424994914|ref|ZP_18406827.1| ribonuclease HIII [Enterococcus faecium ERV168]
gi|424998365|ref|ZP_18410058.1| ribonuclease HIII [Enterococcus faecium ERV165]
gi|425001765|ref|ZP_18413252.1| ribonuclease HIII [Enterococcus faecium ERV161]
gi|425004271|ref|ZP_18415591.1| ribonuclease HIII [Enterococcus faecium ERV102]
gi|425012202|ref|ZP_18423034.1| ribonuclease HIII [Enterococcus faecium E422]
gi|425018031|ref|ZP_18428510.1| ribonuclease HIII [Enterococcus faecium C621]
gi|425031573|ref|ZP_18436695.1| ribonuclease HIII [Enterococcus faecium 515]
gi|402924560|gb|EJX44758.1| ribonuclease HIII [Enterococcus faecium S447]
gi|402931798|gb|EJX51355.1| ribonuclease HIII [Enterococcus faecium R499]
gi|402933646|gb|EJX53066.1| ribonuclease HIII [Enterococcus faecium R496]
gi|402944148|gb|EJX62585.1| ribonuclease HIII [Enterococcus faecium R446]
gi|402948997|gb|EJX67091.1| ribonuclease HIII [Enterococcus faecium P1986]
gi|402956714|gb|EJX74154.1| ribonuclease HIII [Enterococcus faecium P1140]
gi|402978796|gb|EJX94513.1| ribonuclease HIII [Enterococcus faecium ERV168]
gi|402983444|gb|EJX98844.1| ribonuclease HIII [Enterococcus faecium ERV165]
gi|402985387|gb|EJY00597.1| ribonuclease HIII [Enterococcus faecium ERV161]
gi|402990024|gb|EJY04920.1| ribonuclease HIII [Enterococcus faecium ERV102]
gi|402994060|gb|EJY08623.1| ribonuclease HIII [Enterococcus faecium E422]
gi|403003186|gb|EJY17096.1| ribonuclease HIII [Enterococcus faecium C621]
gi|403015335|gb|EJY28246.1| ribonuclease HIII [Enterococcus faecium 515]
Length = 313
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 87 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 144
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K I
Sbjct: 145 IIQLADILKK---TIPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPE-K 200
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 201 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 247
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 248 IISRASFLEELDKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 297
>gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4]
gi|423518527|ref|ZP_17495008.1| ribonuclease HII [Bacillus cereus HuA2-4]
gi|229564282|sp|A9VT75.1|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII
gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|401160735|gb|EJQ68110.1| ribonuclease HII [Bacillus cereus HuA2-4]
Length = 257
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKDHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V IISP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIISPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|423452862|ref|ZP_17429715.1| ribonuclease HII [Bacillus cereus BAG5X1-1]
gi|423522333|ref|ZP_17498806.1| ribonuclease HII [Bacillus cereus HuA4-10]
gi|401139421|gb|EJQ46983.1| ribonuclease HII [Bacillus cereus BAG5X1-1]
gi|401175027|gb|EJQ82230.1| ribonuclease HII [Bacillus cereus HuA4-10]
Length = 257
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKEHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|69245129|ref|ZP_00603253.1| Ribonuclease HIII [Enterococcus faecium DO]
gi|257879657|ref|ZP_05659310.1| ribonuclease HIII [Enterococcus faecium 1,230,933]
gi|257890323|ref|ZP_05669976.1| ribonuclease HIII [Enterococcus faecium 1,231,410]
gi|260559681|ref|ZP_05831861.1| ribonuclease HIII [Enterococcus faecium C68]
gi|293560083|ref|ZP_06676587.1| ribonuclease hiii [Enterococcus faecium E1162]
gi|294614400|ref|ZP_06694316.1| ribonuclease hiii [Enterococcus faecium E1636]
gi|294617524|ref|ZP_06697154.1| ribonuclease hiii [Enterococcus faecium E1679]
gi|383329429|ref|YP_005355313.1| ribonuclease HIII [Enterococcus faecium Aus0004]
gi|415898670|ref|ZP_11551400.1| ribonuclease hiii [Enterococcus faecium E4453]
gi|427396581|ref|ZP_18889340.1| ribonuclease HIII [Enterococcus durans FB129-CNAB-4]
gi|430831136|ref|ZP_19449189.1| ribonuclease HIII [Enterococcus faecium E0333]
gi|430855308|ref|ZP_19473017.1| ribonuclease HIII [Enterococcus faecium E1392]
gi|431546275|ref|ZP_19518900.1| ribonuclease HIII [Enterococcus faecium E1731]
gi|431638664|ref|ZP_19523291.1| ribonuclease HIII [Enterococcus faecium E1904]
gi|431755263|ref|ZP_19543917.1| ribonuclease HIII [Enterococcus faecium E2883]
gi|431771241|ref|ZP_19559627.1| ribonuclease HIII [Enterococcus faecium E1644]
gi|431772681|ref|ZP_19561019.1| ribonuclease HIII [Enterococcus faecium E2369]
gi|447912182|ref|YP_007393594.1| Ribonuclease HIII [Enterococcus faecium NRRL B-2354]
gi|68195972|gb|EAN10405.1| Ribonuclease HIII [Enterococcus faecium DO]
gi|257813885|gb|EEV42643.1| ribonuclease HIII [Enterococcus faecium 1,230,933]
gi|257826683|gb|EEV53309.1| ribonuclease HIII [Enterococcus faecium 1,231,410]
gi|260074349|gb|EEW62671.1| ribonuclease HIII [Enterococcus faecium C68]
gi|291592708|gb|EFF24301.1| ribonuclease hiii [Enterococcus faecium E1636]
gi|291596130|gb|EFF27393.1| ribonuclease hiii [Enterococcus faecium E1679]
gi|291605950|gb|EFF35380.1| ribonuclease hiii [Enterococcus faecium E1162]
gi|364089860|gb|EHM32506.1| ribonuclease hiii [Enterococcus faecium E4453]
gi|378939123|gb|AFC64195.1| ribonuclease HIII [Enterococcus faecium Aus0004]
gi|425723251|gb|EKU86142.1| ribonuclease HIII [Enterococcus durans FB129-CNAB-4]
gi|430482007|gb|ELA59148.1| ribonuclease HIII [Enterococcus faecium E0333]
gi|430547314|gb|ELA87250.1| ribonuclease HIII [Enterococcus faecium E1392]
gi|430591594|gb|ELB29623.1| ribonuclease HIII [Enterococcus faecium E1731]
gi|430602143|gb|ELB39722.1| ribonuclease HIII [Enterococcus faecium E1904]
gi|430617263|gb|ELB54137.1| ribonuclease HIII [Enterococcus faecium E2883]
gi|430633766|gb|ELB69920.1| ribonuclease HIII [Enterococcus faecium E1644]
gi|430637760|gb|ELB73759.1| ribonuclease HIII [Enterococcus faecium E2369]
gi|445187891|gb|AGE29533.1| Ribonuclease HIII [Enterococcus faecium NRRL B-2354]
Length = 305
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 79 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 136
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K I
Sbjct: 137 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPE-K 192
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 193 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 239
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 240 IISRASFLEELHKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 289
>gi|326693332|ref|ZP_08230337.1| ribonuclease HIII [Leuconostoc argentinum KCTC 3773]
Length = 313
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 19/214 (8%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
VLG DE G G GP+ Y PKD ++ LG ADSK LT+ K I I
Sbjct: 99 SVLGSDEVGAGAYFGPLTTAAVYVPKD-QLAWVRQLGIADSKTLTDAKMRQIAPEII--- 154
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L V + P + +SH+ +G + IA + +D
Sbjct: 155 ANLPHHVVNLMPEKYNQMQPTNNVNQMKAISHNFVLGKVLAKIAP-TTPDAILIDQFAQA 213
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+Y K L++ II K + + +K + + V AASI A+V ++
Sbjct: 214 STYFKYLTQAQQSPII----KNNVHF-------TTKGEQYHLSVAAASILARVVELDSMA 262
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
+ + GI + G+G+ D + L +D
Sbjct: 263 KLSEEAGIPLP---IGAGHQADEAAAQLLDRGLD 293
>gi|160880532|ref|YP_001559500.1| ribonuclease HII [Clostridium phytofermentans ISDg]
gi|189043586|sp|A9KLL7.1|RNH2_CLOPH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|160429198|gb|ABX42761.1| Ribonuclease H [Clostridium phytofermentans ISDg]
Length = 254
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP++ PKD + L DSK L+EKKR+ + D I
Sbjct: 72 ICGIDEVGRGPLAGPVIACAVILPKD-----CEILYINDSKQLSEKKREALYDEI----- 121
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
M + IS + S R ++ ++ + +++A G I K+ GV + D V P+
Sbjct: 122 ----MEKAISVGIGSASHARIEEINILQATYEAMRGAINKL---GVVPELLLNDAVTIPK 174
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ P++ P++ K D+ + AASI AKV+RD +
Sbjct: 175 V-------VIPQV------------PII------KGDAKSISIAAASIVAKVTRDRLMVE 209
Query: 222 W 222
+
Sbjct: 210 Y 210
>gi|421527423|ref|ZP_15974025.1| ribonuclease HII [Fusobacterium nucleatum ChDC F128]
gi|402256458|gb|EJU06938.1| ribonuclease HII [Fusobacterium nucleatum ChDC F128]
Length = 213
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 41/184 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE-N 100
V+G+DEAGRGP+ GP+V A K+ EEL + DSK LTEKKR+ + D I K +
Sbjct: 15 VIGVDEAGRGPLAGPVV-AAAVMLKEYTEELDE---INDSKKLTEKKREKLYDVIMKNFD 70
Query: 101 AWLGW-MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+G VE I I N+ + +LN++ IR N +E V G
Sbjct: 71 VAVGISTVEEIDKLNILNADFLAMRRALNDLKS------IR-------NEKEYTVLVDGN 117
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + +P+V K D+ + AASI AKV+RD +
Sbjct: 118 ----------------LKIKEYVGKQFPIV------KGDAKSLSIAAASIIAKVTRDRFM 155
Query: 220 KSWT 223
K
Sbjct: 156 KDLA 159
>gi|225028010|ref|ZP_03717202.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353]
gi|224954724|gb|EEG35933.1| ribonuclease HII [Eubacterium hallii DSM 3353]
Length = 251
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V G PK + + L DSK L+ KKR+++ D I +E
Sbjct: 71 ICGIDEVGRGPLAGPVVAGAVVLPKGS-----RILYINDSKKLSAKKREELFDIIKEEAV 125
Query: 102 WLGWMV---EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+G + E I I + + ++ +S + L V+ GV++++V
Sbjct: 126 SVGIGMASPERIDEINILQATYEAMRQAIANLSVKPELLLNDAVMIPGVDIKQV------ 179
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P++ K D+ +GAASI AKV RD
Sbjct: 180 ----------------------------PII------KGDAKSISIGAASIMAKVYRDHM 205
Query: 219 LKSW 222
++ +
Sbjct: 206 MEEY 209
>gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T]
gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T]
Length = 203
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 79/194 (40%), Gaps = 54/194 (27%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S + G+DEAGRGP+ GP+V E G ADSK L+E R+ L +
Sbjct: 12 SSSLICGVDEAGRGPLCGPVVAAAVILDPARPIE-----GLADSKKLSEAARER-LAPLI 65
Query: 98 KENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVRE 151
+ A L W V EI N++ +ML Q R V+A G+ E
Sbjct: 66 RARA-LAWAVAEASVEEIDRLNILHATMLAMQ----------------RAVMALGIAPAE 108
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
V +D P+L YP A K D+T P + AASI A
Sbjct: 109 VRID------------GNRCPKL----------PYP---ARAIVKGDATEPSISAASILA 143
Query: 212 KVSRDSALKSWTFQ 225
K +RD+A++ Q
Sbjct: 144 KTARDAAMRELDAQ 157
>gi|406947101|gb|EKD78098.1| ribonuclease HII [uncultured bacterium]
Length = 196
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 80/198 (40%), Gaps = 60/198 (30%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYC--PKDNNEELLKNLGCADSKALTEKKRDDILD 94
KS + G+DEAGRGP+ GP V+ A P N EL DSK LTEKKR+ +
Sbjct: 3 KSFRFIAGVDEAGRGPLAGP-VFAAAVILNPTHNILEL------TDSKLLTEKKREKLFT 55
Query: 95 SICKE----NAWLGWMVEIISPNVICNSML--RRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
I ++ + + EI N++ S+L RR L V H
Sbjct: 56 EITEKCISYSVAFSSVAEIDEMNILQASLLAMRRAVAQLTVVPH---------------- 99
Query: 149 VREVYVDTVGPPES-YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
EV+VD P Y K LII + D PV+ AA
Sbjct: 100 --EVWVDGNQNPRCPYPTK-------LII-------------------QGDFLIPVISAA 131
Query: 208 SICAKVSRDSALKSWTFQ 225
SI AKV+RD +K Q
Sbjct: 132 SIIAKVTRDRLMKKLDVQ 149
>gi|430946886|ref|ZP_19485666.1| ribonuclease HIII [Enterococcus faecium E1576]
gi|431003610|ref|ZP_19488708.1| ribonuclease HIII [Enterococcus faecium E1578]
gi|431251922|ref|ZP_19503980.1| ribonuclease HIII [Enterococcus faecium E1623]
gi|430558283|gb|ELA97702.1| ribonuclease HIII [Enterococcus faecium E1576]
gi|430561699|gb|ELB00953.1| ribonuclease HIII [Enterococcus faecium E1578]
gi|430578348|gb|ELB16900.1| ribonuclease HIII [Enterococcus faecium E1623]
Length = 305
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 79 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 136
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K I
Sbjct: 137 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPE-K 192
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 193 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 239
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 240 IISRASFLEELHKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 289
>gi|71279195|ref|YP_268311.1| ribonuclease HII [Colwellia psychrerythraea 34H]
gi|97182381|sp|Q485F4.1|RNH2_COLP3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|71144935|gb|AAZ25408.1| ribonuclease HII [Colwellia psychrerythraea 34H]
Length = 217
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 97/237 (40%), Gaps = 44/237 (18%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ G+DE GRGP++G +V DN E G DSK L+EKKR ++L KE
Sbjct: 17 CIAGVDEVGRGPLVGDVVTAAVILDPDNPIE-----GLMDSKKLSEKKR-NLLSLEIKEK 70
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A + W + SP Q+ + H + + R V G+NV +V G
Sbjct: 71 A-ISWSLGRASP----------QEIDTLNILHATMLAMQRAV--EGLNVEPDFVLVDG-- 115
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS--- 217
P + + + A+ K D+ + AASI AKV+RD+
Sbjct: 116 --------NRCPTFLCNASESNQQNLKIASQAVV-KGDARVTEISAASIIAKVARDNEMI 166
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
AL + G A GYP TK L + I+ G R S+ +++L
Sbjct: 167 ALDKLHPEYGF-----AKHKGYP----TKLHLEKIIE--HGVLDCYRQSFKPVARVL 212
>gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b]
gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b]
Length = 214
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 47/187 (25%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K V+G+DEAGRGP+ GP+V G +D E L+ + DSK LTEKKR+ + ++I
Sbjct: 19 KYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPE--LQEIN--DSKKLTEKKRERLFEAI 74
Query: 97 CKENAWLGWMV----EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
K N +G + EI N++ N+ + ++N+V+ +A + V
Sbjct: 75 EK-NCIVGIGIASEKEIDEMNIL-NATFLAMRRAINQVAEKSAFDI-------------V 119
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
VD Y+ + E I+ K DS + ASI AK
Sbjct: 120 LVDGNHLIREYEGE-----QECIV-------------------KGDSKSLAIATASIVAK 155
Query: 213 VSRDSAL 219
V+RD L
Sbjct: 156 VTRDRML 162
>gi|256823113|ref|YP_003147076.1| Ribonuclease H [Kangiella koreensis DSM 16069]
gi|256796652|gb|ACV27308.1| Ribonuclease H [Kangiella koreensis DSM 16069]
Length = 191
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 96/245 (39%), Gaps = 74/245 (30%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V N +G ADSK LTEK+R+ + I KE A
Sbjct: 7 IAGVDEVGRGPLAGPVVAAAVILDPAN-----PIVGLADSKKLTEKRREALSIEI-KEKA 60
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ S+L K ++ +SH + LI ++ R
Sbjct: 61 -LAWSIARAEVEEIDRINILQASLL-AMKRAVETLSHSPELALIDGNHCPELDCRM---- 114
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
E II K DS P + AASI AKV+R
Sbjct: 115 -----------------EAII-------------------KGDSKEPAISAASILAKVAR 138
Query: 216 DSALKSWTFQEGIQIENNAWG------SGYPGDPVTKKFLSENIDPVFGFPQLVRFSWST 269
D+ E +++E G GYP + + I P+ R S++
Sbjct: 139 DT--------EMVEMEQTYPGYGFAKHKGYPTQQHREAIMQLGITPIH------RRSYAP 184
Query: 270 ASKIL 274
++L
Sbjct: 185 VQRML 189
>gi|346642771|ref|YP_258321.2| ribonuclease HII [Pseudomonas protegens Pf-5]
gi|380865419|sp|Q4KHG2.2|RNH2_PSEF5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|341579911|gb|AAY90477.2| ribonuclease HII [Pseudomonas protegens Pf-5]
Length = 208
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 78/189 (41%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D +L G DSK LTE +R+ + D IC++
Sbjct: 15 VAGVDEVGRGPLCGAVV--TAAVILDPTRPIL---GLNDSKKLTEARREKLFDEICEKA- 68
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 69 -LSWCIARAEVEEIDELNILHATMLAMQR---------AVEGL----------------- 101
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
S KL+ I +A A++ K DS P + AASI AKVSR
Sbjct: 102 ------SVTPKLAMIDGNRCPKLAMPAEAVV---------KGDSKVPAIAAASILAKVSR 146
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 147 DREMAAFEL 155
>gi|385831881|ref|YP_005869694.1| ribonuclease HIII [Lactococcus lactis subsp. lactis CV56]
gi|418037190|ref|ZP_12675575.1| Ribonuclease H [Lactococcus lactis subsp. cremoris CNCM I-1631]
gi|326407889|gb|ADZ64960.1| ribonuclease HIII [Lactococcus lactis subsp. lactis CV56]
gi|354694848|gb|EHE94487.1| Ribonuclease H [Lactococcus lactis subsp. cremoris CNCM I-1631]
Length = 292
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 28 ISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEK 87
I+ +P+ Q ++G DE G G G ++ ++ ++N LK +G ADSK LT++
Sbjct: 67 IAQVVPQK---QTNLIGTDEVGNGSYFGGLMVTASFVIEEN-LNFLKEIGVADSKKLTDE 122
Query: 88 KRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGV 147
K I + + +VE N + S S+ H+ AI L+ K + G
Sbjct: 123 KICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNA--VSIKVALHNQAIYLLEKQL--GH 178
Query: 148 NVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAA 207
+ +D +YKK +++ + +P+ + +KA+ + V +
Sbjct: 179 KPENIVIDAFTTEANYKKYVNK-------------EQNHPLTKVTLLTKAEDQFLAVAVS 225
Query: 208 SICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL-SENIDPVFGFPQLVRFS 266
SI ++ LK + + G + + G+G D + + + S+ +D QL +
Sbjct: 226 SIISRYLFLENLKKLSKESGFTLPS---GAGNLSDKIAAQIIKSQGVD---ALNQLAKLH 279
Query: 267 WSTASKILK 275
++ K +K
Sbjct: 280 FANTQKAIK 288
>gi|257882653|ref|ZP_05662306.1| ribonuclease HIII [Enterococcus faecium 1,231,502]
gi|257883962|ref|ZP_05663615.1| ribonuclease HIII [Enterococcus faecium 1,231,501]
gi|293568791|ref|ZP_06680105.1| ribonuclease hiii [Enterococcus faecium E1071]
gi|294622759|ref|ZP_06701714.1| ribonuclease hiii [Enterococcus faecium U0317]
gi|406580067|ref|ZP_11055288.1| ribonuclease HIII [Enterococcus sp. GMD4E]
gi|406584560|ref|ZP_11059587.1| ribonuclease HIII [Enterococcus sp. GMD2E]
gi|406590815|ref|ZP_11065165.1| ribonuclease HIII [Enterococcus sp. GMD1E]
gi|410936709|ref|ZP_11368572.1| ribonuclease HIII [Enterococcus sp. GMD5E]
gi|416132266|ref|ZP_11597878.1| ribonuclease hiii [Enterococcus faecium E4452]
gi|430819492|ref|ZP_19438144.1| ribonuclease HIII [Enterococcus faecium E0045]
gi|430825907|ref|ZP_19444105.1| ribonuclease HIII [Enterococcus faecium E0164]
gi|430828001|ref|ZP_19446131.1| ribonuclease HIII [Enterococcus faecium E0269]
gi|430834323|ref|ZP_19452330.1| ribonuclease HIII [Enterococcus faecium E0679]
gi|430838517|ref|ZP_19456463.1| ribonuclease HIII [Enterococcus faecium E0688]
gi|430843628|ref|ZP_19461527.1| ribonuclease HIII [Enterococcus faecium E1050]
gi|430852081|ref|ZP_19469816.1| ribonuclease HIII [Enterococcus faecium E1258]
gi|430857728|ref|ZP_19475361.1| ribonuclease HIII [Enterococcus faecium E1552]
gi|430860623|ref|ZP_19478222.1| ribonuclease HIII [Enterococcus faecium E1573]
gi|431149565|ref|ZP_19499423.1| ribonuclease HIII [Enterococcus faecium E1620]
gi|431230240|ref|ZP_19502443.1| ribonuclease HIII [Enterococcus faecium E1622]
gi|431301460|ref|ZP_19507779.1| ribonuclease HIII [Enterococcus faecium E1626]
gi|431746635|ref|ZP_19535460.1| ribonuclease HIII [Enterococcus faecium E2134]
gi|431764578|ref|ZP_19553115.1| ribonuclease HIII [Enterococcus faecium E4215]
gi|431767634|ref|ZP_19556081.1| ribonuclease HIII [Enterococcus faecium E1321]
gi|431775336|ref|ZP_19563609.1| ribonuclease HIII [Enterococcus faecium E2560]
gi|431780210|ref|ZP_19568395.1| ribonuclease HIII [Enterococcus faecium E4389]
gi|431781493|ref|ZP_19569640.1| ribonuclease HIII [Enterococcus faecium E6012]
gi|431786132|ref|ZP_19574148.1| ribonuclease HIII [Enterococcus faecium E6045]
gi|257818311|gb|EEV45639.1| ribonuclease HIII [Enterococcus faecium 1,231,502]
gi|257819800|gb|EEV46948.1| ribonuclease HIII [Enterococcus faecium 1,231,501]
gi|291588508|gb|EFF20342.1| ribonuclease hiii [Enterococcus faecium E1071]
gi|291597810|gb|EFF28947.1| ribonuclease hiii [Enterococcus faecium U0317]
gi|364093366|gb|EHM35643.1| ribonuclease hiii [Enterococcus faecium E4452]
gi|404454654|gb|EKA01566.1| ribonuclease HIII [Enterococcus sp. GMD4E]
gi|404463912|gb|EKA09487.1| ribonuclease HIII [Enterococcus sp. GMD2E]
gi|404468829|gb|EKA13705.1| ribonuclease HIII [Enterococcus sp. GMD1E]
gi|410734739|gb|EKQ76657.1| ribonuclease HIII [Enterococcus sp. GMD5E]
gi|430440564|gb|ELA50811.1| ribonuclease HIII [Enterococcus faecium E0045]
gi|430445615|gb|ELA55345.1| ribonuclease HIII [Enterococcus faecium E0164]
gi|430484082|gb|ELA61117.1| ribonuclease HIII [Enterococcus faecium E0269]
gi|430485554|gb|ELA62460.1| ribonuclease HIII [Enterococcus faecium E0679]
gi|430491759|gb|ELA68211.1| ribonuclease HIII [Enterococcus faecium E0688]
gi|430497487|gb|ELA73524.1| ribonuclease HIII [Enterococcus faecium E1050]
gi|430542663|gb|ELA82771.1| ribonuclease HIII [Enterococcus faecium E1258]
gi|430546938|gb|ELA86880.1| ribonuclease HIII [Enterococcus faecium E1552]
gi|430552021|gb|ELA91771.1| ribonuclease HIII [Enterococcus faecium E1573]
gi|430574226|gb|ELB13004.1| ribonuclease HIII [Enterococcus faecium E1622]
gi|430575454|gb|ELB14170.1| ribonuclease HIII [Enterococcus faecium E1620]
gi|430580650|gb|ELB19117.1| ribonuclease HIII [Enterococcus faecium E1626]
gi|430608537|gb|ELB45783.1| ribonuclease HIII [Enterococcus faecium E2134]
gi|430630587|gb|ELB66942.1| ribonuclease HIII [Enterococcus faecium E1321]
gi|430630718|gb|ELB67067.1| ribonuclease HIII [Enterococcus faecium E4215]
gi|430640689|gb|ELB76523.1| ribonuclease HIII [Enterococcus faecium E4389]
gi|430643052|gb|ELB78808.1| ribonuclease HIII [Enterococcus faecium E2560]
gi|430646205|gb|ELB81699.1| ribonuclease HIII [Enterococcus faecium E6045]
gi|430649438|gb|ELB84815.1| ribonuclease HIII [Enterococcus faecium E6012]
Length = 305
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P++ SQ VLG DE G G GP+ AY +D EL K LG DSK L + +
Sbjct: 79 ASSLPKNI-SQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRK-LGVRDSKELKDSQ 136
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVN 148
+ D + K + + + ++SP + + H+ AI L+ K I
Sbjct: 137 IIQLADILKKT---IPYKLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPE-K 192
Query: 149 VREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+ +D P ++KK +L + Y V +K + + V AAS
Sbjct: 193 PEAILIDQFTPEANFKKYARLEKNQL-------QEKLYFV------TKGEQYHLAVAAAS 239
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFS 266
I ++ S L + + GI + + G+G D V K L + G P L +++
Sbjct: 240 IISRASFLEELDKASAEAGITLPS---GAGTKSDQVAAKLLEKG-----GMPMLEKYA 289
>gi|126698859|ref|YP_001087756.1| ribonuclease HII [Clostridium difficile 630]
gi|254974807|ref|ZP_05271279.1| ribonuclease HII [Clostridium difficile QCD-66c26]
gi|255092195|ref|ZP_05321673.1| ribonuclease HII [Clostridium difficile CIP 107932]
gi|255100280|ref|ZP_05329257.1| ribonuclease HII [Clostridium difficile QCD-63q42]
gi|255306219|ref|ZP_05350391.1| ribonuclease HII [Clostridium difficile ATCC 43255]
gi|255313934|ref|ZP_05355517.1| ribonuclease HII [Clostridium difficile QCD-76w55]
gi|255516614|ref|ZP_05384290.1| ribonuclease HII [Clostridium difficile QCD-97b34]
gi|255649714|ref|ZP_05396616.1| ribonuclease HII [Clostridium difficile QCD-37x79]
gi|260682869|ref|YP_003214154.1| ribonuclease HII [Clostridium difficile CD196]
gi|260686467|ref|YP_003217600.1| ribonuclease HII [Clostridium difficile R20291]
gi|306519826|ref|ZP_07406173.1| ribonuclease HII [Clostridium difficile QCD-32g58]
gi|384360458|ref|YP_006198310.1| ribonuclease HII [Clostridium difficile BI1]
gi|423090849|ref|ZP_17079135.1| ribonuclease HII [Clostridium difficile 70-100-2010]
gi|123363581|sp|Q18BC9.1|RNH2_CLOD6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|115250296|emb|CAJ68118.1| Ribonuclease HII (RNase HII) [Clostridium difficile 630]
gi|260209032|emb|CBA62137.1| ribonuclease HII [Clostridium difficile CD196]
gi|260212483|emb|CBE03398.1| ribonuclease HII [Clostridium difficile R20291]
gi|357555964|gb|EHJ37586.1| ribonuclease HII [Clostridium difficile 70-100-2010]
Length = 255
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 72/182 (39%), Gaps = 48/182 (26%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGP+ GP+V KD E G DSK L+E KRD++ + I +E
Sbjct: 77 GIDEAGRGPLAGPVVASVVVFKKDTKIE-----GVNDSKKLSEAKRDELFEVIKEEALDY 131
Query: 104 GWMV---EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
G + E I I N+ K ++N + L+ G+++
Sbjct: 132 GIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIPGIDI----------- 180
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
S P+V K DS + AASI AKV+RDS +
Sbjct: 181 -----------------------SQNPIV------KGDSKSISIAAASILAKVTRDSIMY 211
Query: 221 SW 222
+
Sbjct: 212 QY 213
>gi|389575882|ref|ZP_10165910.1| ribonuclease HII [Eubacterium cellulosolvens 6]
gi|389311367|gb|EIM56300.1| ribonuclease HII [Eubacterium cellulosolvens 6]
Length = 218
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 58/189 (30%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE-- 99
+ G+DE GRGP+ GP+ PKD + L DSK L+EK+R+++ D I +E
Sbjct: 38 ICGVDEVGRGPLAGPVTTAAVILPKDA-----RILYINDSKKLSEKRREELYDIIMEEAI 92
Query: 100 ------NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
N+W E I I + L + S+N + + + V G+++ ++
Sbjct: 93 AVSVKLNSW-----ERIDEINILQATLESMRESVNTLDVRPDLVFVDAVTIPGIDIPQI- 146
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
P++ K D+ + AASI AKV
Sbjct: 147 ---------------------------------PII------KGDAKSQSIAAASIIAKV 167
Query: 214 SRDSALKSW 222
+RD +K +
Sbjct: 168 TRDRMMKEY 176
>gi|424921670|ref|ZP_18345031.1| Ribonuclease HII [Pseudomonas fluorescens R124]
gi|404302830|gb|EJZ56792.1| Ribonuclease HII [Pseudomonas fluorescens R124]
Length = 208
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N + LG DSK LTE +R+ + D I +++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPI---LGLNDSKKLTEARREKLYDEIIEKS- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++++
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHIQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ K DS P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PKLPMRAEAVV-KGDSKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMSAFEL 157
>gi|339443159|ref|YP_004709164.1| ribonuclease HII [Clostridium sp. SY8519]
gi|338902560|dbj|BAK48062.1| ribonuclease HII [Clostridium sp. SY8519]
Length = 254
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 52/204 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+V G PKD + L DSK L+ +R+++ I ++ A
Sbjct: 74 ICGIDEAGRGPLAGPVVAGAVVLPKD-----CRILYINDSKKLSPGRREELYAVIQEQAA 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W V I+ P I + ++ +++A IR + PE
Sbjct: 129 --AWSVGIVGPERI-------DEVNILNATYEAMTQAIRGL----------------SPE 163
Query: 162 SYKKKLSEIFPELI----ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P+L+ +T+ P++ K D+ +GAASI AKV+RD
Sbjct: 164 ----------PDLLLNDAVTIPQIDIPQVPII------KGDAKSISIGAASILAKVTRDR 207
Query: 218 ALKSW--TFQEGIQIENNAWGSGY 239
+ + + E +N +G+ +
Sbjct: 208 IMVEYDKVYPEYGFAQNKGYGAAF 231
>gi|113868020|ref|YP_726509.1| ribonuclease HII [Ralstonia eutropha H16]
gi|123133958|sp|Q0KA30.1|RNH2_RALEH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|113526796|emb|CAJ93141.1| Ribonuclease HII [Ralstonia eutropha H16]
Length = 238
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 44 GIDEAGRGPVLGPMVYGTAYC--PKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
G+DEAGRGP+ GP VY A PK G ADSK LT KR+ + + IC+
Sbjct: 27 GVDEAGRGPLAGP-VYAAAVILDPKRPIR------GLADSKILTAAKREQLYEKICERA- 78
Query: 102 WLGWMV------EIISPNVICNSMLRRQK 124
LGW + EI + N++ SML Q+
Sbjct: 79 -LGWHIAFATVEEIDTLNILHASMLAMQR 106
>gi|90580985|ref|ZP_01236786.1| ribonuclease HII [Photobacterium angustum S14]
gi|90437863|gb|EAS63053.1| ribonuclease HII [Vibrio angustum S14]
Length = 203
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 54/186 (29%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ G+DE GRGP++G +V TA D N + G DSK LTEKKR+ + D I KE
Sbjct: 17 CIAGVDEVGRGPLVGAVV--TAAVILDPNNPI---KGLTDSKKLTEKKRNLLFDEI-KEK 70
Query: 101 AWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
A L W + EI + N++ +M+ Q+ AG++V+ YV
Sbjct: 71 A-LSWSLGRCEADEIDNLNILQATMVAMQR------------------AVAGLSVQPDYV 111
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
G PEL P+ A+ K D + AASI AKV+
Sbjct: 112 LIDG----------NKVPEL------------PMAAQAVV-KGDLRVAEISAASIIAKVT 148
Query: 215 RDSALK 220
RD ++
Sbjct: 149 RDREME 154
>gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603]
gi|423558600|ref|ZP_17534902.1| ribonuclease HII [Bacillus cereus MC67]
gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603]
gi|401191868|gb|EJQ98890.1| ribonuclease HII [Bacillus cereus MC67]
Length = 257
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKEHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|169824229|ref|YP_001691840.1| ribonuclease HII [Finegoldia magna ATCC 29328]
gi|167831034|dbj|BAG07950.1| ribonuclease HII [Finegoldia magna ATCC 29328]
Length = 207
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 38/183 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PK N E+++ G DSK L+EKKR D I N
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMPK--NCEIIE--GVTDSKKLSEKKRIKFKDMIL--NQ 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + V + VI +E++ A L K R V E
Sbjct: 68 ALAYSVNFVDQGVI------------DEINIKQATRLSMK--------RAV--------E 99
Query: 162 SYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
S K K ++ I P+LI+ A + D+ + + + YP + ASI AKV RD +K
Sbjct: 100 SLKTKDNKFIKPDLIVIDAEEIDTD--IKQMSFVKGDEKLYP-ISCASIVAKVIRDEYMK 156
Query: 221 SWT 223
Sbjct: 157 EMA 159
>gi|402312921|ref|ZP_10831844.1| ribonuclease HII [Lachnospiraceae bacterium ICM7]
gi|400367497|gb|EJP20513.1| ribonuclease HII [Lachnospiraceae bacterium ICM7]
Length = 214
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP+ GP+V PKD L DSK +TEK+RD + D I K+NA
Sbjct: 32 VAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLN-----DSKKVTEKRRDVLFDEI-KQNA 85
Query: 102 WLGWMVEIISPNVICNSMLRRQKY-----SLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ + + I S +I + + Y ++N + + L+ V +N+++V
Sbjct: 86 -IAYGIGIASNTLIDEINILQATYEAMREAINALEKTPDVLLVDAVHIPDINIKQV 140
>gi|423097052|ref|ZP_17084848.1| ribonuclease HII [Pseudomonas fluorescens Q2-87]
gi|397886092|gb|EJL02575.1| ribonuclease HII [Pseudomonas fluorescens Q2-87]
Length = 206
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 78/192 (40%), Gaps = 54/192 (28%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICK 98
Q V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC+
Sbjct: 12 QELVAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICE 66
Query: 99 ENAWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ L W + EI N++ +ML Q+ A GL
Sbjct: 67 KA--LSWCIARAEVEEIDELNILHATMLAMQR---------AVQGL-------------- 101
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
I P+L + ++ A I + D P + AASI AK
Sbjct: 102 ----------------HITPKLAMIDGNRCPKLSMRAEAVI--QGDGKVPAIAAASILAK 143
Query: 213 VSRDSALKSWTF 224
VSRD + ++
Sbjct: 144 VSRDREMTAFEL 155
>gi|313681315|ref|YP_004059053.1| RNAase h II [Sulfuricurvum kujiense DSM 16994]
gi|313154175|gb|ADR32853.1| RNase HII [Sulfuricurvum kujiense DSM 16994]
Length = 182
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 73/176 (41%), Gaps = 50/176 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ A +N E G DSK LTEKKR+ + + IC+
Sbjct: 3 LCGIDEAGRGPLAGPLT--IAGVILNNPIE-----GLNDSKKLTEKKRESLYELICE--- 52
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
NS+ ++ DAA +D +G +
Sbjct: 53 ---------------NSIYHIARF-------DAA-----------------QIDELGLSQ 73
Query: 162 SYKKKLSEIFPELI-ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
L EI L +S + V G KAD+T P V AASI AKV+RD
Sbjct: 74 CLATGLREIMSALGEADYLYDGNSKFGVSGLRTMVKADATVPEVSAASILAKVTRD 129
>gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER]
gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64]
gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER]
gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64]
Length = 198
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 56/182 (30%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAGRG GP+V G P++ N L+K DSK L++K+R++ L
Sbjct: 15 IVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIK-----DSKQLSQKQREEAL-------- 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
EII N I + + +N +E VD + P +
Sbjct: 62 ------EIILENAI-------------------------ETVTTIINAQE--VDQLNPKQ 88
Query: 162 SYKKKLSEIF------PELIITVASKA-DSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
+ + + PEL+IT K D P + K D V AASI AKV+
Sbjct: 89 ASRIGMQRCINKLNTKPELVITDFEKINDINIPQINLV---KGDQLSINVAAASILAKVT 145
Query: 215 RD 216
RD
Sbjct: 146 RD 147
>gi|384045196|ref|YP_005493213.1| Ribonuclease HII [Bacillus megaterium WSH-002]
gi|345442887|gb|AEN87904.1| Ribonuclease HII [Bacillus megaterium WSH-002]
Length = 255
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D G DSK L+E KR+ + ICK
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPPD-----FFLPGLTDSKKLSEAKREAFYEEICKSAV 127
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G + II VI + + Y + + AI L+ V E+ +D + P
Sbjct: 128 AIG--IGIIGAEVIDSINI----YEATKKAMTEAIELL------AVQPDELLIDAMKLP- 174
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+ +I K D+T + A+S+ AKV+RD +K
Sbjct: 175 ------------------------VPISQQSII-KGDATSISIAASSVIAKVTRDRMMK 208
>gi|340757888|ref|ZP_08694480.1| ribonuclease HII [Fusobacterium varium ATCC 27725]
gi|340577702|gb|EES64711.2| ribonuclease HII [Fusobacterium varium ATCC 27725]
Length = 237
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 62/241 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAGRGP+ GP+V A KD N EL + DSK L+EKKR+ + D + KE+
Sbjct: 52 IIGVDEAGRGPLAGPVV-AAAVKIKDYNSELDE---INDSKQLSEKKREKLYD-VVKEHF 106
Query: 102 WLGWMV----EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
++G V EI N I N+ + +L + + + G ++ +RE
Sbjct: 107 YIGIGVADSKEIDEIN-ILNATFLAMRRALENLKKECS-GEYLVLVDGNFKIRE------ 158
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
YK + PV+ K D + AASI AKV+RD
Sbjct: 159 -----YKGRQE------------------PVI------KGDGKSLSIAAASIIAKVTRDR 189
Query: 218 ALKSWTFQ---EGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
++ + G + ++ +G+ D + K +G ++ R S+ T KIL
Sbjct: 190 IMREEAIKYPLYGFE-KHKGYGTKQHRDAIEK----------YGVLEMHRKSFLT--KIL 236
Query: 275 K 275
K
Sbjct: 237 K 237
>gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469]
gi|255268487|gb|EET61692.1| ribonuclease HII [Marvinbryantia formatexigens DSM 14469]
Length = 252
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 60/190 (31%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA-----DSKALTEKKRDDILDSI 96
+ GIDEAGRGP+ GP+V G PK GC DSK L+EK R+ + D I
Sbjct: 72 ICGIDEAGRGPLAGPVVAGAVILPK----------GCTIRYLNDSKQLSEKMREQLYDEI 121
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ +G V + SP I + ++ + +++A +R I A ++VR
Sbjct: 122 MERAVAVG--VGMASPARI-------DEINILQATYEA----MRDAIGA-LSVR------ 161
Query: 157 VGPPESYKKKLSEIFPELIITVASKADST----YPVVGAAIASKADSTYPVVGAASICAK 212
P++++ A + T P+V K D+ + AAS+ AK
Sbjct: 162 ---------------PDILLNDAVRIPGTDIEQVPIV------KGDAKSLSIAAASVIAK 200
Query: 213 VSRDSALKSW 222
V+RD +K +
Sbjct: 201 VTRDRLMKEY 210
>gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
Length = 252
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 50/185 (27%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V G PKD + L DSK L+EK+R+++ D I ++
Sbjct: 72 ICGIDEVGRGPLAGPVVAGAVILPKD-----CEILYLNDSKKLSEKRREELYDEIMEKAI 126
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
G + I+SP R + ++ + +++A I+++
Sbjct: 127 ATG--IGIVSPA-------RIDEINILQATYEAMRIAIQQL------------------- 158
Query: 162 SYKKKLSEIFPELI----ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
E P+L+ +T+ P++ K D+ + AASI AKV+RD
Sbjct: 159 -------ETEPDLLLNDAVTIPGVTIDQVPII------KGDAKSVSIAAASIIAKVTRDR 205
Query: 218 ALKSW 222
+ +
Sbjct: 206 LMVQY 210
>gi|329767413|ref|ZP_08258938.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341]
gi|328836102|gb|EGF85793.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341]
Length = 258
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 36 CKSQPC--VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDIL 93
C + C + GIDE GRGP+ GP+V KD+ E G DSK L+ KKR++I
Sbjct: 62 CYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDSYFE-----GLNDSKKLSAKKREEIY 116
Query: 94 DSICKENAWLGWMVEIISPNVICN-SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ I +N + + IC + +KY+ + + A I + R V
Sbjct: 117 EQI--KNEAVAY--------AICEVDNIEIEKYN---IYNAARIAMQRAV---------- 153
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+KL E+ P+ ++ A ++ YP+ ++ K D + AAS+ AK
Sbjct: 154 ------------EKL-EVKPDFLLIDAMPFEN-YPIPNFSMV-KGDEKSVSIAAASVMAK 198
Query: 213 VSRDSALKSWTFQ-EGIQIENNA-WGS 237
V RD+ +K + + ENNA +G+
Sbjct: 199 VYRDNLMKEYAKKYPNYDFENNAGYGT 225
>gi|418964780|ref|ZP_13516568.1| ribonuclease HII [Streptococcus constellatus subsp. constellatus
SK53]
gi|383344181|gb|EID22350.1| ribonuclease HII [Streptococcus constellatus subsp. constellatus
SK53]
Length = 260
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 43/183 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PKD+ K G DSK +++KK + I + K+
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPKDS-----KIKGLNDSKKISKKKHETIYQEVLKQAV 126
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G I N + + + ++ E + A I +R +
Sbjct: 127 AIGIG---IKDNQVIDEV------NIYEATKLAMIEAVRNL------------------- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+I P+ ++ A K D P K D+ + AASI AKV+RD +
Sbjct: 159 -------KITPQHLLIDAMKLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMTD 208
Query: 222 WTF 224
+
Sbjct: 209 YDL 211
>gi|421879710|ref|ZP_16311170.1| Ribonuclease HIII [Leuconostoc citreum LBAE C11]
gi|390446419|emb|CCF27290.1| Ribonuclease HIII [Leuconostoc citreum LBAE C11]
Length = 308
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 24/235 (10%)
Query: 22 NSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADS 81
N+ ++ +TIP + V+G DE G G GP+ + K N+ + +K LG ADS
Sbjct: 76 NASHVTPGATIPTDFANW-SVIGSDEVGAGAYFGPLTTAAVFVSK-NDLDWVKALGIADS 133
Query: 82 KALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRK 141
K LT+ K DI I + L V +SP L +SH+ A+ + +
Sbjct: 134 KTLTDAKMRDIAPEIIQR---LPHHVVNLSPEKYNALQPHNNVNQLKAISHNFALHKVLE 190
Query: 142 VIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI--ASKADS 199
IA + + +D +Y L SKA + PV+ + +K +
Sbjct: 191 KIAP-ITPDAILIDQFAQATTYFNYL------------SKAQQS-PVIRQNVYFTTKGEQ 236
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENID 254
+ V AASI A+V + + + + G+ + G+G D V K + + D
Sbjct: 237 YHLSVAAASILARVVELDTMVALSHEAGMTLP---IGAGKAVDLVAAKLIRQGQD 288
>gi|448823469|ref|YP_007416634.1| ribonuclease HII [Corynebacterium urealyticum DSM 7111]
gi|448276966|gb|AGE36390.1| ribonuclease HII [Corynebacterium urealyticum DSM 7111]
Length = 241
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 73/175 (41%), Gaps = 40/175 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAGRG GP+ + P EL G DSK LT K+R+ + D+I E+A
Sbjct: 41 VAGVDEAGRGACCGPITIASCILPDHGVPEL---AGLNDSKKLTPKRREKLFDAI-TEHA 96
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+V I + + + Q ++N G+ R V V V D V
Sbjct: 97 VAYKIVHIPAAEIDQKGI---QYANIN--------GMYRAVAGLSVEPDVVLTDAVH--- 142
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
PEL A P+V K D+ P + AASI AKVSRD
Sbjct: 143 ---------LPELACEHA-------PLV------KGDALSPAISAASILAKVSRD 175
>gi|421166126|ref|ZP_15624394.1| ribonuclease HII [Pseudomonas aeruginosa ATCC 700888]
gi|404539103|gb|EKA48608.1| ribonuclease HII [Pseudomonas aeruginosa ATCC 700888]
Length = 201
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V TA D + +L G DSK L+E +R+ + + I +E A
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPSRPIL---GLNDSKKLSEARREALFEEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R V V R +D
Sbjct: 68 -LAW----------CIARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 ------GNRCPKLAVPCA-------PVV------KGDSQVPAIAAASILAKVSRD----- 146
Query: 222 WTFQEGIQIENNAWGSGYPG 241
+E ++++ G G G
Sbjct: 147 ---REMVELDRVYPGYGMAG 163
>gi|409426388|ref|ZP_11260943.1| ribonuclease HII [Pseudomonas sp. HYS]
Length = 209
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 74/181 (40%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D +L G DSK LTE KR+ + D IC++
Sbjct: 14 VAGVDEVGRGPLCGAVV--TAAVILDPKRPIL---GLNDSKKLTEAKREKLFDEICEKAL 68
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
C + ++ + H + + R V + + +D
Sbjct: 69 SF------------CIARAEVEEIDQLNILHATMLAMQRAVEGLSITPKLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVV K DS P + AASI AKV+RD + +
Sbjct: 111 ------GNRCPQLSVPAA-------PVV------KGDSQVPAIAAASILAKVTRDREMAA 151
Query: 222 W 222
+
Sbjct: 152 F 152
>gi|332295819|ref|YP_004437742.1| ribonuclease H [Thermodesulfobium narugense DSM 14796]
gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796]
Length = 210
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 72/181 (39%), Gaps = 49/181 (27%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
LG+DE GRG + GP+V G Y KD + G DSK L +++R ++ D I ++ ++
Sbjct: 23 LGMDEVGRGALAGPLVVGAVYFDKDYMID-----GLKDSKLLKDQERRELCDIIKRKASY 77
Query: 103 --LGWMV--EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+GW EI N+ +L ++ LN
Sbjct: 78 WSIGWAYHWEIDKLNIYSALVLACKRAILN------------------------------ 107
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
PE I S T+P + KAD P V AASI AKV+RD
Sbjct: 108 ---------MNFLPEAIFFDGSLKLKTFP-FKHIVFPKADRLVPSVAAASIIAKVARDDY 157
Query: 219 L 219
+
Sbjct: 158 M 158
>gi|423612054|ref|ZP_17587915.1| ribonuclease HII [Bacillus cereus VD107]
gi|401247061|gb|EJR53405.1| ribonuclease HII [Bacillus cereus VD107]
Length = 257
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPED-----FYIPGLNDSKKLSEAKRERFYDEIKDHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS PE ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPEYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|107103156|ref|ZP_01367074.1| hypothetical protein PaerPA_01004225 [Pseudomonas aeruginosa PACS2]
gi|218890133|ref|YP_002438997.1| ribonuclease HII [Pseudomonas aeruginosa LESB58]
gi|254236556|ref|ZP_04929879.1| ribonuclease HII [Pseudomonas aeruginosa C3719]
gi|254242340|ref|ZP_04935662.1| ribonuclease HII [Pseudomonas aeruginosa 2192]
gi|386057371|ref|YP_005973893.1| ribonuclease HII [Pseudomonas aeruginosa M18]
gi|416854815|ref|ZP_11911145.1| ribonuclease HII [Pseudomonas aeruginosa 138244]
gi|420138159|ref|ZP_14646100.1| ribonuclease HII [Pseudomonas aeruginosa CIG1]
gi|421152549|ref|ZP_15612129.1| ribonuclease HII [Pseudomonas aeruginosa ATCC 14886]
gi|421158565|ref|ZP_15617813.1| ribonuclease HII [Pseudomonas aeruginosa ATCC 25324]
gi|421179194|ref|ZP_15636790.1| ribonuclease HII [Pseudomonas aeruginosa E2]
gi|226736823|sp|B7V7U6.1|RNH2_PSEA8 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|126168487|gb|EAZ53998.1| ribonuclease HII [Pseudomonas aeruginosa C3719]
gi|126195718|gb|EAZ59781.1| ribonuclease HII [Pseudomonas aeruginosa 2192]
gi|218770356|emb|CAW26121.1| ribonuclease HII [Pseudomonas aeruginosa LESB58]
gi|334843564|gb|EGM22151.1| ribonuclease HII [Pseudomonas aeruginosa 138244]
gi|347303677|gb|AEO73791.1| ribonuclease HII [Pseudomonas aeruginosa M18]
gi|403249142|gb|EJY62657.1| ribonuclease HII [Pseudomonas aeruginosa CIG1]
gi|404525309|gb|EKA35585.1| ribonuclease HII [Pseudomonas aeruginosa ATCC 14886]
gi|404547437|gb|EKA56435.1| ribonuclease HII [Pseudomonas aeruginosa E2]
gi|404549506|gb|EKA58364.1| ribonuclease HII [Pseudomonas aeruginosa ATCC 25324]
gi|453047351|gb|EME95065.1| ribonuclease HII [Pseudomonas aeruginosa PA21_ST175]
Length = 201
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V TA D + +L G DSK L+E +R+ + + I +E A
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPSRPIL---GLNDSKKLSEARREALFEEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R V V R +D
Sbjct: 68 -LAW----------CIARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 ------GNRCPKLAVPCA-------PVV------KGDSQVPAIAAASILAKVSRD----- 146
Query: 222 WTFQEGIQIENNAWGSGYPG 241
+E ++++ G G G
Sbjct: 147 ---REMVELDRVYPGYGMAG 163
>gi|294500952|ref|YP_003564652.1| ribonuclease HII [Bacillus megaterium QM B1551]
gi|294350889|gb|ADE71218.1| ribonuclease HII [Bacillus megaterium QM B1551]
Length = 255
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D G DSK L+E KR+ + ICK
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPPD-----FFLPGLTDSKKLSEAKREAFYEEICKSAV 127
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G + II VI + + Y + + AI L+ V E+ +D + P
Sbjct: 128 AIG--IGIIGAEVIDSINI----YEATKKAMTEAIELL------AVQPDELLIDAMKLP- 174
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+ +I K D+T + A+S+ AKV+RD +K
Sbjct: 175 ------------------------VPISQQSII-KGDATSISIAASSVIAKVTRDRMMK 208
>gi|410940991|ref|ZP_11372790.1| ribonuclease HII [Leptospira noguchii str. 2006001870]
gi|410783550|gb|EKR72542.1| ribonuclease HII [Leptospira noguchii str. 2006001870]
Length = 231
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN---LGCADSKALTEKKRDDIL 93
+S PC GIDEAGRGP GP+ +D+ ++LK G DSK L+EKKR+ +
Sbjct: 20 ESIPC--GIDEAGRGPYAGPLSVALVSFSQDSLTQILKGKILKGLTDSKKLSEKKRESLY 77
Query: 94 DSICKENAWLGWMVEIISPNVICNSMLRR 122
I K A + ISPN I + R
Sbjct: 78 PEILK-TAQFSYRT-FISPNYIDREGINR 104
>gi|421746406|ref|ZP_16184203.1| ribonuclease HII [Cupriavidus necator HPC(L)]
gi|409775056|gb|EKN56593.1| ribonuclease HII [Cupriavidus necator HPC(L)]
Length = 253
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 72/188 (38%), Gaps = 51/188 (27%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP+ GP+ E G ADSK LT +R+ + D IC L
Sbjct: 3 GVDEAGRGPLAGPVFAAAVVLDPARPIE-----GLADSKILTAARREALFDEICSRA--L 55
Query: 104 GWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
W + EI + N++ +ML Q+ + V A G+ V VD
Sbjct: 56 AWHIAFATVEEIDTLNILHATMLAMQRA-------------VHGVAACGIAPDLVQVDGN 102
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P YPV K D+T + AASI AKV+RD
Sbjct: 103 RCPH----------------------VPYPVEAVI---KGDATVQAISAASILAKVARDR 137
Query: 218 ALKSWTFQ 225
L + Q
Sbjct: 138 ELVALHAQ 145
>gi|404483943|ref|ZP_11019158.1| hypothetical protein HMPREF1135_02218 [Clostridiales bacterium
OBRC5-5]
gi|404342955|gb|EJZ69324.1| hypothetical protein HMPREF1135_02218 [Clostridiales bacterium
OBRC5-5]
Length = 214
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP+ GP+V PKD L DSK +TEK+RD + D I K+NA
Sbjct: 32 VAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLN-----DSKKVTEKRRDVLFDEI-KQNA 85
Query: 102 WLGWMVEIISPNVICNSMLRRQKY-----SLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ + + I S +I + + Y ++N + + L+ V +N+++V
Sbjct: 86 -IAYGIGIASNTLIDEINILQATYEAMREAVNALEKTPDVLLVDAVHIPDINIKQV 140
>gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
BAA-613]
gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
BAA-613]
Length = 222
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ G PK + L DSK L+EK+R+++ I KE A
Sbjct: 36 ICGIDEAGRGPLAGPVAAGAVVLPKG-----CRILYLNDSKKLSEKRREELFLEI-KEKA 89
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ W V + SP I + + Y E +A GL +V P
Sbjct: 90 -VAWNVGLASPARIDEINILQATY---EAMREAVKGL-----------------SVKP-- 126
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
E+ +T+ P++ K D+ + AASI AKV+RD +
Sbjct: 127 -------EVLLNDAVTIPGLEGVQVPII------KGDAKSLSIAAASILAKVTRDHMMAE 173
Query: 222 W 222
+
Sbjct: 174 Y 174
>gi|399154691|ref|ZP_10754758.1| ribonuclease HII [gamma proteobacterium SCGC AAA007-O20]
Length = 203
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 46/189 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+G+DEAGRGP+ G +V P D G DSK L+EKKRD + I +
Sbjct: 14 TIGVDEAGRGPLAGSVVAAAVILPPD-----FHLYGLTDSKKLSEKKRDSLYQQITDQCD 68
Query: 102 WL---GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
W +EI N++ +ML ++ A ++++E Y
Sbjct: 69 WSVAEASSIEIDQINILQATMLAMKR--------------------AIIDLQEEY----- 103
Query: 159 PPESYKKKLSEIFPELIITVASKADSTY-PVVGAAIA-SKADSTYPVVGAASICAKVSRD 216
Y+ K IF ++ D + P + IA K D + + AASI AKV+RD
Sbjct: 104 --SKYRGK--TIFNVMV-------DGNHCPGIANCIAIVKGDLSESTISAASIIAKVTRD 152
Query: 217 SALKSWTFQ 225
++ Q
Sbjct: 153 RQMRELDSQ 161
>gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937]
gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937]
Length = 198
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 87/206 (42%), Gaps = 56/206 (27%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ G+DE GRGP++G +V TA D N + G ADSK L+EK+R + D I +E
Sbjct: 12 CIAGVDEVGRGPLVGAVV--TAAVILDPNRPI---AGLADSKTLSEKRRLALYDEI-REK 65
Query: 101 AWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
A L W + EI S N++ +ML Q+ A GL
Sbjct: 66 A-LAWSLGRAEPEEIDSLNILHATMLAMQR---------AVAGL---------------- 99
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
I P+ ++ ++ S P+ A+ K DS + AASI AKV+
Sbjct: 100 --------------PITPDFVLIDGNRCPS-LPMPSQAVV-KGDSRVAEISAASILAKVT 143
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYP 240
RD ++ + A GYP
Sbjct: 144 RDREME--VLDQQFPEYGFAQHKGYP 167
>gi|254304340|ref|ZP_04971698.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148324532|gb|EDK89782.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 217
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 41/184 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE-N 100
V+G+DEAGRGP+ GP+V A K+ EEL + DSK LTEKKR+ + D I K +
Sbjct: 19 VIGVDEAGRGPLAGPVV-AAAVILKEYTEELNE---INDSKKLTEKKREKLYDIIMKNFD 74
Query: 101 AWLGW-MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+G VE I I N+ + +LN++ + N +E V G
Sbjct: 75 VAVGISTVEEIDKLNILNADFLAMRRALNDLKNIK-------------NEKEYTVLVDGN 121
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + +P+V K D+ + AASI AKV+RD +
Sbjct: 122 ----------------LKIKEYVGKQFPIV------KGDAKSLSIAAASIIAKVTRDRFM 159
Query: 220 KSWT 223
K
Sbjct: 160 KDLA 163
>gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
Length = 207
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 58/238 (24%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGT-AYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
+ + C++GIDEAGRGP+ GP+V A+ P +EE+ DSK L++KKR +
Sbjct: 14 QGKTCIVGIDEAGRGPIAGPLVVAAVAFPPGYFHEEIY------DSKKLSDKKRRALFQD 67
Query: 96 ICKENAWLGWMVEIISPNVICN-SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+ + + + II P +I ++ R + ++ +S + +A G V
Sbjct: 68 VIHQAK--EYHIAIIEPAIIDELNIYRATQNAMQTLSEQFS-------MADG-----VLT 113
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
D + P + K +S + K D + AASI AKV+
Sbjct: 114 DAMPLPGNTKDVISLV-------------------------KGDQKSVSIAAASILAKVT 148
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDP---------VTKKFLSENIDPVFGFPQLV 263
RD ++++ Q A GYP V K E+ PV QLV
Sbjct: 149 RDCIMEAYDKQ--YPQYGFARHKGYPTKAHIEALHTYGVVKGLYRESYGPVAAMRQLV 204
>gi|297587481|ref|ZP_06946125.1| ribonuclease H [Finegoldia magna ATCC 53516]
gi|297574170|gb|EFH92890.1| ribonuclease H [Finegoldia magna ATCC 53516]
Length = 207
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 38/183 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V PK N E++ G DSK L+EKKR D I +
Sbjct: 14 ICGVDEVGRGPLAGPVVTCAIIMPK--NCEIID--GVTDSKKLSEKKRIKFKDMIL--DQ 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + V + +VI +++ N +S A+ E
Sbjct: 68 ALAYSVNFVDQSVIDEINIKQA----NRLSMKRAV------------------------E 99
Query: 162 SYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
S K K ++ I P+LI+ A K D+ + + + YP + ASI AKV RD +K
Sbjct: 100 SLKTKDNKFIKPDLIVIDAEKIDTD--IKQMSFVKGDEKLYP-ISCASIVAKVIRDEYMK 156
Query: 221 SWT 223
Sbjct: 157 DMA 159
>gi|417925866|ref|ZP_12569281.1| ribonuclease HII [Finegoldia magna SY403409CC001050417]
gi|341590791|gb|EGS34022.1| ribonuclease HII [Finegoldia magna SY403409CC001050417]
Length = 207
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 80/183 (43%), Gaps = 38/183 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PK N E+++ G DSK L+EKKR D I N
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMPK--NCEIIE--GVTDSKKLSEKKRIKFKDMIL--NQ 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + V + VI +E++ A L K R V E
Sbjct: 68 ALAYSVNFVDQGVI------------DEINIKQATRLSMK--------RAV--------E 99
Query: 162 SYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
S K K ++ I P+LI+ A + D+ + + YP + ASI AKV RD +K
Sbjct: 100 SLKTKDNKFIKPDLIVIDAEEIDTD--IKQMSFVKGDQKLYP-ISCASIVAKVIRDEYMK 156
Query: 221 SWT 223
Sbjct: 157 EMA 159
>gi|303234893|ref|ZP_07321518.1| ribonuclease HII [Finegoldia magna BVS033A4]
gi|302494011|gb|EFL53792.1| ribonuclease HII [Finegoldia magna BVS033A4]
Length = 207
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 80/183 (43%), Gaps = 38/183 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PK N E++ G DSK L+EKKR D I N
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMPK--NCEIID--GVTDSKKLSEKKRIKFKDMIL--NQ 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L + V + VI +E++ A L K R V E
Sbjct: 68 ALAYSVNFVDQGVI------------DEINIKQATRLSMK--------RAV--------E 99
Query: 162 SYKKKLSE-IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
S K K ++ I P+LI+ A + D+ + + + YP + ASI AKV RD +K
Sbjct: 100 SLKTKDNKFIKPDLIVIDAEEIDTD--IKQMSFVKGDEKLYP-ISCASIVAKVIRDEYMK 156
Query: 221 SWT 223
Sbjct: 157 DMA 159
>gi|423483427|ref|ZP_17460117.1| ribonuclease HII [Bacillus cereus BAG6X1-2]
gi|401140978|gb|EJQ48533.1| ribonuclease HII [Bacillus cereus BAG6X1-2]
Length = 257
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRERFYDEIKEHAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS P+ ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPQYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|228992565|ref|ZP_04152492.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442]
gi|228767199|gb|EEM15835.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442]
Length = 272
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PKD G DSK L+E KR+ D I ++
Sbjct: 89 IAGIDEVGRGPLAGPVVTAAVVLPKD-----FYIPGLNDSKKLSEAKRERFYDEIKEQAI 143
Query: 102 WLGWMVEIISPNVI 115
+G V I+SP VI
Sbjct: 144 AIG--VGIVSPQVI 155
>gi|357053019|ref|ZP_09114123.1| ribonuclease HII [Clostridium clostridioforme 2_1_49FAA]
gi|355386444|gb|EHG33484.1| ribonuclease HII [Clostridium clostridioforme 2_1_49FAA]
Length = 218
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 42/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ G PK + L DSK L+EK+R+D+ I KE A
Sbjct: 34 ICGIDEAGRGPLAGPVAAGAVVLPKG-----CRILYLNDSKKLSEKRREDLFLEI-KEKA 87
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ W V + +P I + + Y E +A GL K
Sbjct: 88 -VAWNVGLATPARIDEINILQATY---EAMREAVKGLAVK-------------------- 123
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
EI +T+ P++ K D+ + AAS+ AKV+RD +
Sbjct: 124 ------PEILLNDAVTIPGLDAVQVPII------KGDAKSLSIAAASVLAKVTRDHMMAG 171
Query: 222 W 222
+
Sbjct: 172 Y 172
>gi|348590205|ref|YP_004874667.1| ribonuclease HII [Taylorella asinigenitalis MCE3]
gi|347974109|gb|AEP36644.1| Ribonuclease HII [Taylorella asinigenitalis MCE3]
Length = 212
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 78/185 (42%), Gaps = 29/185 (15%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S ++GIDEAGRGP+ G V+ A + E G DSK LT KR+ + I
Sbjct: 2 SDNLIIGIDEAGRGPLAGN-VFAAAVLLGSIHIE-----GLTDSKKLTAIKREQLTQIIH 55
Query: 98 KENAWLGWM---VEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
+++ VE I I N+ L +L+EV + +++ V +
Sbjct: 56 EKSIRYSVAQSSVEEIDEINILNATLLAMNRALDEVLEALSPKYKDEILT-------VII 108
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
D PES K K + + V SK K D T P V AASI AK S
Sbjct: 109 DGNRIPESLKGKAPIYYKNFKLNVISKI-------------KGDLTVPAVSAASIIAKTS 155
Query: 215 RDSAL 219
RDS +
Sbjct: 156 RDSHI 160
>gi|116051639|ref|YP_789522.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14]
gi|296387853|ref|ZP_06877328.1| ribonuclease HII [Pseudomonas aeruginosa PAb1]
gi|313109047|ref|ZP_07795019.1| ribonuclease HII [Pseudomonas aeruginosa 39016]
gi|355640014|ref|ZP_09051504.1| ribonuclease HII [Pseudomonas sp. 2_1_26]
gi|392982634|ref|YP_006481221.1| ribonuclease HII [Pseudomonas aeruginosa DK2]
gi|416873827|ref|ZP_11917730.1| ribonuclease HII [Pseudomonas aeruginosa 152504]
gi|419754766|ref|ZP_14281124.1| ribonuclease HII [Pseudomonas aeruginosa PADK2_CF510]
gi|421173120|ref|ZP_15630874.1| ribonuclease HII [Pseudomonas aeruginosa CI27]
gi|122260782|sp|Q02RB4.1|RNH2_PSEAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|115586860|gb|ABJ12875.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14]
gi|310881521|gb|EFQ40115.1| ribonuclease HII [Pseudomonas aeruginosa 39016]
gi|334844241|gb|EGM22818.1| ribonuclease HII [Pseudomonas aeruginosa 152504]
gi|354831534|gb|EHF15546.1| ribonuclease HII [Pseudomonas sp. 2_1_26]
gi|384398584|gb|EIE44989.1| ribonuclease HII [Pseudomonas aeruginosa PADK2_CF510]
gi|392318139|gb|AFM63519.1| ribonuclease HII [Pseudomonas aeruginosa DK2]
gi|404536421|gb|EKA46061.1| ribonuclease HII [Pseudomonas aeruginosa CI27]
Length = 201
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V TA D + +L G DSK L+E +R+ + + I +E A
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPSRPIL---GLNDSKKLSEARREALFEEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R V V R +D
Sbjct: 68 -LAW----------CIARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 ------GNRCPKLAVPSA-------PVV------KGDSQVPAIAAASILAKVSRD----- 146
Query: 222 WTFQEGIQIENNAWGSGYPG 241
+E ++++ G G G
Sbjct: 147 ---REMVELDRVYPGYGMAG 163
>gi|449708101|gb|EMD47624.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica KU27]
Length = 78
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
+GIDEAGRGPVLGPMVY + N E++ +G DSK L+ R+ + I
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT---TNTEVISTMGFHDSKILSRTMREKLFTDI 67
>gi|423615902|ref|ZP_17591736.1| ribonuclease HII [Bacillus cereus VD115]
gi|401260439|gb|EJR66612.1| ribonuclease HII [Bacillus cereus VD115]
Length = 257
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDD-----FHIPGLDDSKKLSEAKRERFYDEIKAQAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS P+ ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPQYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|67613296|ref|XP_667291.1| ribonuclease H1 large subunit [Cryptosporidium hominis TU502]
gi|54658412|gb|EAL37062.1| ribonuclease H1 large subunit [Cryptosporidium hominis]
Length = 81
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKAL 84
+LGIDEAGRGPVLGPMVY + PK+ NE LLK + D K L
Sbjct: 18 ILGIDEAGRGPVLGPMVYACLFYPKE-NENLLKMIS-VDGKLL 58
>gi|59802108|ref|YP_208820.1| ribonuclease HII [Neisseria gonorrhoeae FA 1090]
gi|240015043|ref|ZP_04721956.1| ribonuclease HII [Neisseria gonorrhoeae DGI18]
gi|240017491|ref|ZP_04724031.1| ribonuclease HII [Neisseria gonorrhoeae FA6140]
gi|240122111|ref|ZP_04735073.1| ribonuclease HII [Neisseria gonorrhoeae PID24-1]
gi|73917827|sp|Q5F5X9.1|RNH2_NEIG1 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|59719003|gb|AAW90408.1| putative ribonuclease HII [Neisseria gonorrhoeae FA 1090]
Length = 194
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I KE A +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDALAEMI-KEQA-V 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V +P I SLN + H + + R V ++++D PE
Sbjct: 60 AWHVAASTPEEIA---------SLN-ILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 G------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|395794791|ref|ZP_10474108.1| ribonuclease HII [Pseudomonas sp. Ag1]
gi|395341060|gb|EJF72884.1| ribonuclease HII [Pseudomonas sp. Ag1]
Length = 210
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 101/249 (40%), Gaps = 66/249 (26%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D +L G DSK LTE +R+ + D IC++
Sbjct: 19 VAGVDEVGRGPLCGAVV--TAAVILDPTRPIL---GLNDSKKLTEARREKLYDEICEKA- 72
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 73 -LSWHIARAEVEEIDELNILHATMLAMQR---------AIEGL----------------- 105
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADS-TYPVVGAAIASKADSTYPVVGAASICAKVS 214
I P++ + ++ T P A K DS P + AASI AKVS
Sbjct: 106 -------------HITPKMAMIDGNRCPKLTMP---AEAVVKGDSKVPAIAAASILAKVS 149
Query: 215 RDSALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD + ++ G I + GYP PV + L+ G + R S++ +
Sbjct: 150 RDREMAAFELIYPGYGIGGH---KGYP-TPVHLEALAR-----LGPTPIHRRSFAPVRQA 200
Query: 274 LKEKAVLVE 282
+ + L+E
Sbjct: 201 FEARESLIE 209
>gi|152983475|ref|YP_001346881.1| ribonuclease HII [Pseudomonas aeruginosa PA7]
gi|452878630|ref|ZP_21955824.1| ribonuclease HII [Pseudomonas aeruginosa VRFPA01]
gi|166226639|sp|A6V1E6.1|RNH2_PSEA7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150958633|gb|ABR80658.1| ribonuclease HII [Pseudomonas aeruginosa PA7]
gi|452184703|gb|EME11721.1| ribonuclease HII [Pseudomonas aeruginosa VRFPA01]
Length = 201
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 74/175 (42%), Gaps = 42/175 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V TA D + +L G DSK L+E +R+ + + I +E A
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPSRPIL---GLNDSKKLSEARREALFEEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R V V R +D
Sbjct: 68 -LAW----------CVARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 ------GNRCPRLAVPSA-------PVV------KGDSQVPAIAAASILAKVSRD 146
>gi|89075406|ref|ZP_01161823.1| ribonuclease HII [Photobacterium sp. SKA34]
gi|89048822|gb|EAR54392.1| ribonuclease HII [Photobacterium sp. SKA34]
Length = 203
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 54/186 (29%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ G+DE GRGP++G +V +N E G DSK LTEKKR+ + D I KE
Sbjct: 17 CIAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLTDSKKLTEKKRNLLFDEI-KEK 70
Query: 101 AWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
A L W + EI N++ +M+ Q+ AG++++ YV
Sbjct: 71 A-LSWSLGRCEADEIDKLNILQATMVAMQR------------------AVAGLSLQPDYV 111
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
G PEL P+ A+ K D + AASI AKV+
Sbjct: 112 LIDG----------NKVPEL------------PMAAQAVV-KGDLRVAEISAASIIAKVT 148
Query: 215 RDSALK 220
RD ++
Sbjct: 149 RDREME 154
>gi|402300896|ref|ZP_10820337.1| ribonuclease H [Bacillus alcalophilus ATCC 27647]
gi|401723982|gb|EJS97389.1| ribonuclease H [Bacillus alcalophilus ATCC 27647]
Length = 268
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V PKD + LG DSK L++ KR+ + I KE
Sbjct: 74 IAGLDEVGRGPLAGPVVAAAVIFPKD-----FQLLGLTDSKKLSKAKREQFSEIIKKE-- 126
Query: 102 WLGWMVEIISPNVI 115
L + +++I +VI
Sbjct: 127 ALAYSIQMIPASVI 140
>gi|380693254|ref|ZP_09858113.1| ribonuclease HII [Bacteroides faecis MAJ27]
Length = 200
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 73/197 (37%), Gaps = 43/197 (21%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G DEAGRG + G + PKD ELL DSK LTEK+R + + I KE +
Sbjct: 14 GCDEAGRGCLAGSVYAAAVILPKDFKNELLN-----DSKQLTEKQRYALREVIEKEA--I 66
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V ++SP I + R + + + R V V + + +D
Sbjct: 67 AWAVGVVSPQEIDEINILRASF----------LAMHRAVGQLSVRPQHLLID-------- 108
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+ YP + K D Y + AASI AK RD +
Sbjct: 109 ----------------GNRFNKYPDISHTTVIKGDGKYLSIAAASILAKTYRDDYMNRLH 152
Query: 224 FQEGIQIENNAWGSGYP 240
+ NN GYP
Sbjct: 153 EEYPFYDWNN--NKGYP 167
>gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 218
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 35/234 (14%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+GIDEAGRGPV+GPM +D ++ K +G DSK L+ K+ + I K +
Sbjct: 2 ITIGIDEAGRGPVIGPMTIAGIGIGEDLAQK-FKLIGVKDSKMLSIKRIYLLEREIIKSS 60
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ V +S I N + + E+ + A IA + V +D+ P
Sbjct: 61 N--NFKVIKLSAEEIDNRFENGKNLNYLELDNMAE-------IANNLAGETVVIDS---P 108
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+K+ + I A++ AD + V AASI AK +R+ ++
Sbjct: 109 SRNTEKIRLYLSKKIKDKKIIAENY-----------ADKNHIEVSAASIIAKANREREVE 157
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFL-----SENIDPVFGFPQLVRFSWST 269
+ G +GSGYP DP T +F+ +E I+ + + VR +W+T
Sbjct: 158 KIKKELGYD-----FGSGYPSDPKTIQFIKIITENERINQE-PYKKFVRKTWNT 205
>gi|261338819|ref|ZP_05966677.1| hypothetical protein ENTCAN_05014 [Enterobacter cancerogenus ATCC
35316]
gi|288318642|gb|EFC57580.1| ribonuclease HII [Enterobacter cancerogenus ATCC 35316]
Length = 198
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 48/202 (23%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V G+DE GRGP++G +V TA D ++ G DSK L+EK+R + D I +E
Sbjct: 11 LVAGVDEVGRGPLVGAVV--TAAVILDPARPIV---GLNDSKKLSEKRRLALFDEI-QEK 64
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
A L W S+ R + + ++E++ H + + R V AG+
Sbjct: 65 A-LAW------------SLGRAEPHEIDELNILHATMLAMQRAV--AGL----------- 98
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+I PE ++ ++ + PV A+ K DS P + AASI AKV+RD+
Sbjct: 99 ----------KITPEYVLIDGNRCPA-LPVPSMAVV-KGDSRVPEISAASIIAKVTRDAE 146
Query: 219 LKSWTFQEGIQIENNAWGSGYP 240
+ + + A GYP
Sbjct: 147 MAALDLT--YPLYGFAQHKGYP 166
>gi|451969090|ref|ZP_21922319.1| ribonuclease HII [Treponema denticola US-Trep]
gi|451702262|gb|EMD56691.1| ribonuclease HII [Treponema denticola US-Trep]
Length = 198
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+ G P N +LK DSK LTEKKR+++ +I +
Sbjct: 2 LCGIDEAGRGPLAGPVTAGARIRPSPTNFSILK-----DSKKLTEKKREEVRKTIYAD-- 54
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
PNV+ S+ Y ++E++ A L + G+ ++ +
Sbjct: 55 ----------PNVLW-SIGWASNYEIDEINILQATFLAMERAYEGLYLK---------LQ 94
Query: 162 SYKKKLSEIF--PELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ K ++ F P++I+ + A+ DS Y V+ AASI AK +RD +
Sbjct: 95 EFCKLNNDKFIEPDIIVDGNFIPNIKNCSSIKALVKADDSVYEVM-AASILAKTARDKMM 153
Query: 220 --KSWTFQEGIQIENNAWGS 237
SW + E ++ +G+
Sbjct: 154 IRYSWLYPEYGYEKHKGYGT 173
>gi|395500366|ref|ZP_10431945.1| ribonuclease HII [Pseudomonas sp. PAMC 25886]
Length = 210
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 101/249 (40%), Gaps = 66/249 (26%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D +L G DSK LTE +R+ + D IC++
Sbjct: 19 VAGVDEVGRGPLCGAVV--TAAVILDPKRPIL---GLNDSKKLTEARREKLFDEICEKA- 72
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 73 -LSWHIARAEVEEIDKLNILHATMLAMQR---------AIEGL----------------- 105
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADS-TYPVVGAAIASKADSTYPVVGAASICAKVS 214
I P++ + ++ T P A K DS P + AASI AKVS
Sbjct: 106 -------------HITPKMAMIDGNRCPKLTMP---AEAVVKGDSKVPAIAAASILAKVS 149
Query: 215 RDSALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
RD + ++ G I + GYP PV + L+ G + R S++ +
Sbjct: 150 RDREMAAFELIYPGYGIGGH---KGYP-TPVHLEALAR-----LGPTPIHRRSFAPVRQA 200
Query: 274 LKEKAVLVE 282
+ + L+E
Sbjct: 201 YEARESLIE 209
>gi|217961257|ref|YP_002339825.1| ribonuclease HII [Bacillus cereus AH187]
gi|229197947|ref|ZP_04324662.1| Ribonuclease [Bacillus cereus m1293]
gi|375285760|ref|YP_005106199.1| ribonuclease HII [Bacillus cereus NC7401]
gi|423353539|ref|ZP_17331166.1| ribonuclease HII [Bacillus cereus IS075]
gi|423374366|ref|ZP_17351704.1| ribonuclease HII [Bacillus cereus AND1407]
gi|423567268|ref|ZP_17543515.1| ribonuclease HII [Bacillus cereus MSX-A12]
gi|423574557|ref|ZP_17550676.1| ribonuclease HII [Bacillus cereus MSX-D12]
gi|423604536|ref|ZP_17580429.1| ribonuclease HII [Bacillus cereus VD102]
gi|226736815|sp|B7HLH0.1|RNH2_BACC7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|217062970|gb|ACJ77220.1| ribonuclease HII [Bacillus cereus AH187]
gi|228585526|gb|EEK43629.1| Ribonuclease [Bacillus cereus m1293]
gi|358354287|dbj|BAL19459.1| ribonuclease HII [Bacillus cereus NC7401]
gi|401089352|gb|EJP97523.1| ribonuclease HII [Bacillus cereus IS075]
gi|401094278|gb|EJQ02360.1| ribonuclease HII [Bacillus cereus AND1407]
gi|401212082|gb|EJR18828.1| ribonuclease HII [Bacillus cereus MSX-D12]
gi|401214356|gb|EJR21086.1| ribonuclease HII [Bacillus cereus MSX-A12]
gi|401245156|gb|EJR51514.1| ribonuclease HII [Bacillus cereus VD102]
Length = 257
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PKD G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPKD-----FYIPGLNDSKKLSEAKRERFYDEIKAQAI 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+SP VI
Sbjct: 129 AIG--VGIVSPQVI 140
>gi|373471023|ref|ZP_09562102.1| ribonuclease HII [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
gi|371761216|gb|EHO49850.1| ribonuclease HII [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
Length = 216
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V GIDEAGRGP+ GP+V PKD L DSK +TEK+RD + D I +E
Sbjct: 33 AVAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLN-----DSKKVTEKRRDVLFDQIKQEA 87
Query: 101 AWLGWMV---EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
G + +I I + + ++++++ I L+ V +N+++V +
Sbjct: 88 IAYGIGIASNALIDEINILQATYEAMREAISKLNKTPDILLVDAVHIPDINIKQVGI-VK 146
Query: 158 GPPESYKKKLSEIFPELII-TVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
G +S + I ++ + + D YP G A ++K T + A +C
Sbjct: 147 GDAKSVNIAAASILAKVTRDRLMLEYDKIYPEYGFA-SNKGYGTAKHIEALKVCG 200
>gi|289523589|ref|ZP_06440443.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503281|gb|EFD24445.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 193
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 43/181 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V ++ LLK++G DSKAL+ K+R++I
Sbjct: 3 VVGVDEAGRGPLAGPVVAAAVAATREKM-SLLKSVGVTDSKALSSKRREEIF-------- 53
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG---VNVREVYVDTVG 158
+LRR G I + AA ++ + T+
Sbjct: 54 ----------------LLLRRY-------------GFIYRAQAANPWFIDRANILQATLW 84
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
E LS + P+++I ++ P A+ KAD VVGAASI AKV RD
Sbjct: 85 AMEKAVSSLS-LSPDIVIVDGNQKIPGLPFPQKAL-PKADKNVLVVGAASIVAKVIRDRV 142
Query: 219 L 219
+
Sbjct: 143 M 143
>gi|424939544|ref|ZP_18355307.1| ribonuclease HII [Pseudomonas aeruginosa NCMG1179]
gi|346055990|dbj|GAA15873.1| ribonuclease HII [Pseudomonas aeruginosa NCMG1179]
Length = 201
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V TA D + +L G DSK L+E +R+ + + I +E A
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPSRPIL---GLNDSKKLSEARREALFEEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R V V R +D
Sbjct: 68 -LAW----------CIARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 ------GNRCPKLAVPRA-------PVV------KGDSQVPAIAAASILAKVSRD----- 146
Query: 222 WTFQEGIQIENNAWGSGYPG 241
+E ++++ G G G
Sbjct: 147 ---REMVELDRVYPGYGMAG 163
>gi|169335211|ref|ZP_02862404.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM
17244]
gi|169257949|gb|EDS71915.1| ribonuclease HIII [Anaerofustis stercorihominis DSM 17244]
Length = 304
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
P +LG DE G+G P++ G+ Y K N ++LK LG DSK L++ D I K
Sbjct: 98 PPLLGSDEVGKGDFYAPIIVGSVYLEK-NEYDILKTLGVRDSKDLSD-------DRIIK- 148
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAG--VNVREVY---- 153
L ++ ++ N S+LR + NE+ IG I ++A N++ VY
Sbjct: 149 ---LASEIKKVTNNY---SILRIGQSKYNELY--KKIGNINAILAWAHVTNIKNVYKKQH 200
Query: 154 -----VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASK 196
VD G E + L E+ E+I KA+ V A+I ++
Sbjct: 201 FKKALVDKFGREEQIRNGLKELNLEMIF--KPKAEQNIAVAAASILAR 246
>gi|407793669|ref|ZP_11140701.1| ribonuclease HII [Idiomarina xiamenensis 10-D-4]
gi|407214368|gb|EKE84216.1| ribonuclease HII [Idiomarina xiamenensis 10-D-4]
Length = 187
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 77/190 (40%), Gaps = 54/190 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G DEAGRGP+ GP+V D N+ + G DSK L+EKKR + ++I K NA
Sbjct: 3 ICGTDEAGRGPIAGPVVAAAVIL--DPNKPI---AGITDSKKLSEKKRASLSEAI-KANA 56
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ SML Q R V + +V VD
Sbjct: 57 -LAWAIAQCDADEIDRINILQASMLAMQ----------------RAVAGLPIKPDKVLVD 99
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+ + + AI K D +GAASI AKV R
Sbjct: 100 GNRAPD------------------------FGIAAQAIV-KGDLLEDCIGAASILAKVER 134
Query: 216 DSALKSWTFQ 225
D + +W Q
Sbjct: 135 DRQMLAWHQQ 144
>gi|422809351|ref|ZP_16857762.1| Ribonuclease HII [Listeria monocytogenes FSL J1-208]
gi|378752965|gb|EHY63550.1| Ribonuclease HII [Listeria monocytogenes FSL J1-208]
Length = 261
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + ++I E
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALFETIQTEAI 127
Query: 102 WLGWMVEIISPNVI 115
+G V II NVI
Sbjct: 128 AVG--VGIIEHNVI 139
>gi|423082349|ref|ZP_17070941.1| ribonuclease HII [Clostridium difficile 002-P50-2011]
gi|423087741|ref|ZP_17076127.1| ribonuclease HII [Clostridium difficile 050-P50-2011]
gi|357544055|gb|EHJ26061.1| ribonuclease HII [Clostridium difficile 050-P50-2011]
gi|357548675|gb|EHJ30535.1| ribonuclease HII [Clostridium difficile 002-P50-2011]
Length = 255
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 48/182 (26%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGP+ GP+V KD E G DSK L+E KRD++ + I +E
Sbjct: 77 GIDEAGRGPLAGPVVASVVVFKKDTKIE-----GVNDSKKLSEAKRDELFEVIKEEALDY 131
Query: 104 GWMV---EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
G + E I I N+ K ++N + L+ G+++
Sbjct: 132 GIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIPGIDI----------- 180
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ P+V K DS + AASI AKV+RDS +
Sbjct: 181 -----------------------TQNPIV------KGDSKSISIAAASILAKVTRDSIMY 211
Query: 221 SW 222
+
Sbjct: 212 QY 213
>gi|262372179|ref|ZP_06065458.1| ribonuclease HII [Acinetobacter junii SH205]
gi|262312204|gb|EEY93289.1| ribonuclease HII [Acinetobacter junii SH205]
Length = 188
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 87/207 (42%), Gaps = 59/207 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAGRGP++G +V +N E G DSK LTEKKR+ + I KE A
Sbjct: 3 VAGVDEAGRGPLVGSVVAAAVILDPNNPIE-----GLNDSKKLTEKKREKLFIEI-KEKA 56
Query: 102 WLGWMV------EIISPNVICNSML--RRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
L W + EI N++ + L RR +L H KVI G +
Sbjct: 57 -LAWSIAEATHTEIDEMNILQATFLAMRRAVENLKTTPH--------KVIVDGNQI---- 103
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
P+ I +A +A +VG D+T+ + AASI AKV
Sbjct: 104 ------PKG-------------IEIACEA-----IVG------GDATHAEISAASILAKV 133
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYP 240
+RD +K T E A GYP
Sbjct: 134 TRDHQMK--TLDELYPDYGFAKHKGYP 158
>gi|152968777|ref|YP_001333886.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238893179|ref|YP_002917913.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262044746|ref|ZP_06017793.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330001662|ref|ZP_08304088.1| ribonuclease HII [Klebsiella sp. MS 92-3]
gi|365142838|ref|ZP_09347877.1| ribonuclease HII [Klebsiella sp. 4_1_44FAA]
gi|378977089|ref|YP_005225230.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|386033258|ref|YP_005953171.1| ribonuclease HII [Klebsiella pneumoniae KCTC 2242]
gi|402782318|ref|YP_006637864.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|419975527|ref|ZP_14490936.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419981425|ref|ZP_14496701.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419986670|ref|ZP_14501800.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419992347|ref|ZP_14507304.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419998617|ref|ZP_14513402.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420004505|ref|ZP_14519141.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420010304|ref|ZP_14524779.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420016383|ref|ZP_14530675.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420021822|ref|ZP_14535998.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420027342|ref|ZP_14541336.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420033264|ref|ZP_14547071.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420038722|ref|ZP_14552366.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420044852|ref|ZP_14558328.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420050726|ref|ZP_14564022.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420056013|ref|ZP_14569174.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420060992|ref|ZP_14573986.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420067702|ref|ZP_14580492.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420072920|ref|ZP_14585553.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420078741|ref|ZP_14591195.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420085645|ref|ZP_14597861.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421913589|ref|ZP_16343266.1| Ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421919208|ref|ZP_16348714.1| Ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424829059|ref|ZP_18253787.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|424934983|ref|ZP_18353355.1| Ribonuclease HII (RNase HII) [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425079961|ref|ZP_18483058.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425090080|ref|ZP_18493165.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428148716|ref|ZP_18996569.1| Ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428931652|ref|ZP_19005245.1| ribonuclease HII [Klebsiella pneumoniae JHCK1]
gi|428940410|ref|ZP_19013495.1| ribonuclease HII [Klebsiella pneumoniae VA360]
gi|449058403|ref|ZP_21736612.1| ribonuclease HII [Klebsiella pneumoniae hvKP1]
gi|166225193|sp|A6T4Y5.1|RNH2_KLEP7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150953626|gb|ABR75656.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238545495|dbj|BAH61846.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259037896|gb|EEW39120.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328537604|gb|EGF63824.1| ribonuclease HII [Klebsiella sp. MS 92-3]
gi|339760386|gb|AEJ96606.1| ribonuclease HII [Klebsiella pneumoniae KCTC 2242]
gi|363651132|gb|EHL90213.1| ribonuclease HII [Klebsiella sp. 4_1_44FAA]
gi|364516500|gb|AEW59628.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|397342748|gb|EJJ35904.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397343259|gb|EJJ36408.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397347354|gb|EJJ40462.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397359858|gb|EJJ52545.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397361272|gb|EJJ53937.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397365500|gb|EJJ58123.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397374964|gb|EJJ67272.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397379069|gb|EJJ71269.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397386407|gb|EJJ78490.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397393640|gb|EJJ85393.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397395604|gb|EJJ87309.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397404013|gb|EJJ95545.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397410563|gb|EJK01840.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397411069|gb|EJK02334.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397421029|gb|EJK12065.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397427749|gb|EJK18511.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397432093|gb|EJK22758.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397438589|gb|EJK29081.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397444449|gb|EJK34724.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397448979|gb|EJK39133.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|402543180|gb|AFQ67329.1| Ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|405606886|gb|EKB79856.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405614644|gb|EKB87343.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|407809170|gb|EKF80421.1| Ribonuclease HII (RNase HII) [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410112534|emb|CCM85891.1| Ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410118500|emb|CCM91339.1| Ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|414706476|emb|CCN28180.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|426302366|gb|EKV64571.1| ribonuclease HII [Klebsiella pneumoniae VA360]
gi|426307924|gb|EKV69997.1| ribonuclease HII [Klebsiella pneumoniae JHCK1]
gi|427541357|emb|CCM92707.1| Ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|448875397|gb|EMB10416.1| ribonuclease HII [Klebsiella pneumoniae hvKP1]
Length = 199
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 48/201 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP++G +V TA D + + +G DSK L+EK+R + D I KE A
Sbjct: 12 VAGVDEVGRGPLVGAVV--TAAVILDPAKPI---VGLNDSKKLSEKRRLALFDEI-KEKA 65
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+C S+ R + + ++E++ H + + R V AG++
Sbjct: 66 -------------LCWSLGRAEPHEIDELNILHATMLAMQRAV--AGLS----------- 99
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
I PE ++ ++ S P+ A+ K DS + AASI AKV+RD+ +
Sbjct: 100 ----------IVPEFVLIDGNRCPS-LPMPSQAVV-KGDSRVAEISAASILAKVTRDAEM 147
Query: 220 KSWTFQEGIQIENNAWGSGYP 240
T A GYP
Sbjct: 148 A--TLDLAFPHYGFAQHKGYP 166
>gi|414083722|ref|YP_006992430.1| ribonuclease HII family protein [Carnobacterium maltaromaticum
LMA28]
gi|412997306|emb|CCO11115.1| ribonuclease HII family protein [Carnobacterium maltaromaticum
LMA28]
Length = 261
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 61/206 (29%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P D L DSK L+E KRD++ D I K++A
Sbjct: 75 IAGIDEVGRGPLAGPVVAAAVILPHD-----FHVLEINDSKQLSESKRDELFDKI-KDSA 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR-EVYVDTVGPP 160
+A G+ ++ E +D V
Sbjct: 129 -----------------------------------------LAIGIGIKDEGIIDQVNIY 147
Query: 161 ESYKKKLSE------IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
E+ K + E I PE ++ A D P+ + I K D+ + AASI AKV+
Sbjct: 148 EATKLAMIEAVENLTIDPEHLLIDAMALD--LPIPQSKII-KGDTKSLSIAAASIIAKVT 204
Query: 215 RDSALKSWT-FQEGIQIENNAWGSGY 239
RD +K + G E NA GY
Sbjct: 205 RDRMMKEYAKMYPGYGFEKNA---GY 227
>gi|398843126|ref|ZP_10600276.1| ribonuclease HII [Pseudomonas sp. GM102]
gi|398103944|gb|EJL94103.1| ribonuclease HII [Pseudomonas sp. GM102]
Length = 213
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D + +L G DSK LTE +RD + D IC++
Sbjct: 22 VAGVDEVGRGPLCGAVV--TAAVILDPSRPIL---GLNDSKKLTEARRDALYDEICEKA- 75
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W V EI N++ +ML Q+ A GL
Sbjct: 76 -LSWYVARAEVEEIDELNILHATMLAMQR---------AVEGL----------------- 108
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
I P+L + ++ A I + D P + AASI AKVSR
Sbjct: 109 -------------HIQPKLAMIDGNRCPKLSMRAEAVI--QGDGKVPAIAAASILAKVSR 153
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 154 DREMAAFEL 162
>gi|392531087|ref|ZP_10278224.1| ribonuclease HII [Carnobacterium maltaromaticum ATCC 35586]
Length = 261
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 61/206 (29%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P D L DSK L+E KRD++ D I K++A
Sbjct: 75 IAGIDEVGRGPLAGPVVAAAVILPHD-----FHVLEINDSKQLSESKRDELFDKI-KDSA 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR-EVYVDTVGPP 160
+A G+ ++ E +D V
Sbjct: 129 -----------------------------------------LAIGIGIKDEGIIDQVNIY 147
Query: 161 ESYKKKLSE------IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
E+ K + E I PE ++ A D P+ + I K D+ + AASI AKV+
Sbjct: 148 EATKLAMIEAVENLTIDPEHLLIDAMALD--LPIPQSKII-KGDTKSLSIAAASIIAKVT 204
Query: 215 RDSALKSWT-FQEGIQIENNAWGSGY 239
RD +K + G E NA GY
Sbjct: 205 RDRMMKEYAKMYPGYGFEKNA---GY 227
>gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
gi|226223876|ref|YP_002757983.1| ribonuclease H rnh [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824666|ref|ZP_05229667.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
gi|254852673|ref|ZP_05242021.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
gi|254932410|ref|ZP_05265769.1| rnhB [Listeria monocytogenes HPB2262]
gi|255520255|ref|ZP_05387492.1| ribonuclease HII [Listeria monocytogenes FSL J1-175]
gi|300765309|ref|ZP_07075293.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
gi|404280828|ref|YP_006681726.1| ribonuclease HII [Listeria monocytogenes SLCC2755]
gi|404286689|ref|YP_006693275.1| ribonuclease HII [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405749617|ref|YP_006673083.1| ribonuclease HII [Listeria monocytogenes ATCC 19117]
gi|405752492|ref|YP_006675957.1| ribonuclease HII [Listeria monocytogenes SLCC2378]
gi|406704046|ref|YP_006754400.1| ribonuclease HII [Listeria monocytogenes L312]
gi|417313733|ref|ZP_12100440.1| ribonuclease HII [Listeria monocytogenes J1816]
gi|417317427|ref|ZP_12104045.1| ribonuclease HII [Listeria monocytogenes J1-220]
gi|424714148|ref|YP_007014863.1| Ribonuclease HII [Listeria monocytogenes serotype 4b str. LL195]
gi|424823038|ref|ZP_18248051.1| Ribonuclease HII [Listeria monocytogenes str. Scott A]
gi|67461454|sp|Q720E8.1|RNH2_LISMF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|259494069|sp|C1L2I1.1|RNH2_LISMC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|46880768|gb|AAT04066.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
gi|225876338|emb|CAS05047.1| Putative ribonuclease H rnh [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258605991|gb|EEW18599.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
gi|293583967|gb|EFF95999.1| rnhB [Listeria monocytogenes HPB2262]
gi|293593905|gb|EFG01666.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
gi|300513992|gb|EFK41055.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
gi|328468563|gb|EGF39563.1| ribonuclease HII [Listeria monocytogenes J1816]
gi|328475117|gb|EGF45901.1| ribonuclease HII [Listeria monocytogenes J1-220]
gi|332311718|gb|EGJ24813.1| Ribonuclease HII [Listeria monocytogenes str. Scott A]
gi|404218817|emb|CBY70181.1| ribonuclease HII [Listeria monocytogenes ATCC 19117]
gi|404221692|emb|CBY73055.1| ribonuclease HII [Listeria monocytogenes SLCC2378]
gi|404227463|emb|CBY48868.1| ribonuclease HII [Listeria monocytogenes SLCC2755]
gi|404245618|emb|CBY03843.1| ribonuclease HII [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361076|emb|CBY67349.1| ribonuclease HII [Listeria monocytogenes L312]
gi|424013332|emb|CCO63872.1| Ribonuclease HII [Listeria monocytogenes serotype 4b str. LL195]
Length = 261
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + ++I KE
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALFETIKKEAI 127
Query: 102 WLGWMVEIISPNVI 115
+G V II +VI
Sbjct: 128 AIG--VGIIEHDVI 139
>gi|422314882|ref|ZP_16396333.1| ribonuclease HII [Fusobacterium periodonticum D10]
gi|404593242|gb|EKA94817.1| ribonuclease HII [Fusobacterium periodonticum D10]
Length = 217
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 81/188 (43%), Gaps = 44/188 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE-N 100
V+G+DEAGRGP+ GP+V A K +EEL + DSK LTEKKR+ + D I N
Sbjct: 15 VIGVDEAGRGPLAGPVV-AAAVILKQYSEELDE---INDSKKLTEKKREKLYDIILNNFN 70
Query: 101 AWLGWM-VEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTV 157
+G VE I I N+ + +L ++ H+A I V VD
Sbjct: 71 VAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEAKKDYI------------VLVDGN 118
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ Y+ K PVV K D+ + AASI AKV+RD
Sbjct: 119 LKIKGYEGK------------------QLPVV------KGDAKSLSIAAASIIAKVTRDR 154
Query: 218 ALKSWTFQ 225
+K +
Sbjct: 155 IMKDLGLK 162
>gi|431927929|ref|YP_007240963.1| ribonuclease HII [Pseudomonas stutzeri RCH2]
gi|431826216|gb|AGA87333.1| ribonuclease HII [Pseudomonas stutzeri RCH2]
Length = 212
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 44/184 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC-KEN 100
V G+DE GRGP+ GP+V E G DSK L+E +R+ + D IC K
Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVILDPARPIE-----GLNDSKKLSEARREALFDEICEKAV 68
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
AW C + ++ + H + + R V V R +D
Sbjct: 69 AW-------------CIARAEVEEIDQLNILHATMLAMQRAVEGLSVTPRLALID----- 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+L + A PV+ + D P + AASI AKVSRD ++
Sbjct: 111 -------GNRCPQLNVPSA-------PVI------QGDGQVPAIAAASILAKVSRDREMQ 150
Query: 221 SWTF 224
+
Sbjct: 151 ALDL 154
>gi|387769245|ref|ZP_10125511.1| ribonuclease HII [Pasteurella bettyae CCUG 2042]
gi|386907201|gb|EIJ71916.1| ribonuclease HII [Pasteurella bettyae CCUG 2042]
Length = 199
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 95/235 (40%), Gaps = 52/235 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V G+DE GRGP++G +V +N E G ADSK L+EKKR+ + + I K+
Sbjct: 12 LVAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLADSKKLSEKKREQLAEEI-KQK 65
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L W + P I LN + H + + R V + V VD P
Sbjct: 66 A-LAWALGRAEPEEIDQ---------LN-ILHATMLAMQRAVKNLKIQPHFVLVDGNRVP 114
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + A K DS + AASI AKV+RD ++
Sbjct: 115 EF-------------------------AMPAQAVVKGDSKVQEISAASIIAKVARDHEME 149
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWSTASKIL 274
Q Q E A GYP TK L + ++ FG PQ R S+ K+L
Sbjct: 150 ELDKQYP-QYE-FAKHKGYP----TKVHLEKLVE--FGALPQH-RRSFGPVRKVL 195
>gi|255655274|ref|ZP_05400683.1| ribonuclease HII [Clostridium difficile QCD-23m63]
gi|296451258|ref|ZP_06892998.1| ribonuclease H [Clostridium difficile NAP08]
gi|296880390|ref|ZP_06904353.1| ribonuclease H [Clostridium difficile NAP07]
gi|296259864|gb|EFH06719.1| ribonuclease H [Clostridium difficile NAP08]
gi|296428631|gb|EFH14515.1| ribonuclease H [Clostridium difficile NAP07]
Length = 255
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 48/182 (26%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGP+ GP+V KD E G DSK L+E KRD++ + I +E
Sbjct: 77 GIDEAGRGPLAGPVVASVVVFKKDTKIE-----GVNDSKKLSEAKRDELFEVIKEEALDY 131
Query: 104 GWMV---EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
G + E I I N+ K ++N + L+ G+++
Sbjct: 132 GIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIPGIDI----------- 180
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ P+V K DS + AASI AKV+RDS +
Sbjct: 181 -----------------------AQNPIV------KGDSKSISIAAASILAKVTRDSIMY 211
Query: 221 SW 222
+
Sbjct: 212 QY 213
>gi|398902875|ref|ZP_10651329.1| ribonuclease HII [Pseudomonas sp. GM50]
gi|398177968|gb|EJM65629.1| ribonuclease HII [Pseudomonas sp. GM50]
Length = 213
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D + +L G DSK LTE +RD + D IC++
Sbjct: 22 VAGVDEVGRGPLCGAVV--TAAVILDPSRPIL---GLNDSKKLTEARRDALYDEICEKA- 75
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W V EI N++ +ML Q+ A GL
Sbjct: 76 -LSWYVARAEVEEIDELNILHATMLAMQR---------AVEGL----------------- 108
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
I P+L + ++ A I + D P + AASI AKVSR
Sbjct: 109 -------------HIQPKLAMIDGNRCPKLSMRAEAVI--QGDGKVPAIAAASILAKVSR 153
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 154 DREMAAFEL 162
>gi|398998522|ref|ZP_10701295.1| ribonuclease HII [Pseudomonas sp. GM21]
gi|398120227|gb|EJM09894.1| ribonuclease HII [Pseudomonas sp. GM21]
Length = 208
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQR---------AVEGL----------------- 103
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+ KL+ I ++ +A++ + D P + AASI AKVSR
Sbjct: 104 ------HIQPKLAMIDGNRCPKLSMRAEAVV---------QGDGKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|386732013|ref|YP_006205509.1| ribonuclease HII [Listeria monocytogenes 07PF0776]
gi|384390771|gb|AFH79841.1| ribonuclease HII [Listeria monocytogenes 07PF0776]
Length = 261
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + ++I KE
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALFETIKKEAI 127
Query: 102 WLGWMVEIISPNVI 115
+G V II +VI
Sbjct: 128 AIG--VGIIEHDVI 139
>gi|29348821|ref|NP_812324.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482]
gi|298387905|ref|ZP_06997454.1| ribonuclease HII [Bacteroides sp. 1_1_14]
gi|383124997|ref|ZP_09945656.1| ribonuclease HII [Bacteroides sp. 1_1_6]
gi|39932389|sp|Q8A293.1|RNH2_BACTN RecName: Full=Ribonuclease HII; Short=RNase HII
gi|29340727|gb|AAO78518.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482]
gi|251840852|gb|EES68933.1| ribonuclease HII [Bacteroides sp. 1_1_6]
gi|298259312|gb|EFI02187.1| ribonuclease HII [Bacteroides sp. 1_1_14]
Length = 200
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 67/176 (38%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G DEAGRG + G + PKD ELL DSK LTEK+R + + I KE L
Sbjct: 14 GCDEAGRGCLAGSVYAAAVILPKDFKNELLN-----DSKQLTEKQRYALREVIEKEA--L 66
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V ++SP I + R + + + R V V + + +D
Sbjct: 67 AWAVGVVSPEEIDEINILRASF----------LAMHRAVDQLSVRPQHLLID-------- 108
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ YP + K D Y + AASI AK RD +
Sbjct: 109 ----------------GNRFNKYPDIPHTTVIKGDGKYLSIAAASILAKTYRDDYM 148
>gi|225374458|ref|ZP_03751679.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM
16841]
gi|225213696|gb|EEG96050.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM
16841]
Length = 253
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V G PKD + L DSK L+ KR+++ D I ++
Sbjct: 73 ICGIDEVGRGPLAGPVVAGAVILPKDCD-----ILYINDSKKLSAAKREELYDVIMEKAV 127
Query: 102 WLGWMV---EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+G + + I I + + +++++S I L V GV++R+V
Sbjct: 128 AVGIGMASSQRIDEINILQATYEAMREAISKLSVKPDILLNDAVTIPGVSIRQV------ 181
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P++ K D+ +GAASI AKV+RD
Sbjct: 182 ----------------------------PII------KGDAKSISIGAASIVAKVTRDRL 207
Query: 219 LKSW 222
+ +
Sbjct: 208 MVEY 211
>gi|392551146|ref|ZP_10298283.1| RNAse HII [Pseudoalteromonas spongiae UST010723-006]
Length = 200
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 46/183 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP++G +V TA D ++ ++ G ADSK LTEKKR
Sbjct: 12 IAGVDEVGRGPLVGDVV--TAAVILDPSKPIV---GLADSKKLTEKKR------------ 54
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
L EII +C ++ R ++E++ H + + R V + V++D
Sbjct: 55 -LALYEEIIE-KALCFNIARASVAEIDELNILHATMLAMKRAVEGLNIPAEFVFIDGNRL 112
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P+ ITV ++A K DS + AASI AKV+RD+ +
Sbjct: 113 PD--------------ITVPAQA-----------VVKGDSLVAEISAASILAKVTRDNEM 147
Query: 220 KSW 222
K+
Sbjct: 148 KAL 150
>gi|326791381|ref|YP_004309202.1| ribonuclease H [Clostridium lentocellum DSM 5427]
gi|326542145|gb|ADZ84004.1| Ribonuclease H [Clostridium lentocellum DSM 5427]
Length = 254
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
+Q ++GIDE GRGP+ GP+V P D N +G DSK LTE KR+ + D I
Sbjct: 67 NQYILVGIDEVGRGPLAGPVVAAAVILPYDTNL-----VGLKDSKKLTEPKREKLYDQI- 120
Query: 98 KENAWLGWMVEIISPNV-----ICNSMLRRQKYSLNEVSHD 133
+ NA LG + I+ + I + +++L+E+ D
Sbjct: 121 QSNA-LGIGIGIVDADRIDEINILQATFEAMRHALSELKID 160
>gi|293394717|ref|ZP_06639009.1| ribonuclease HII [Serratia odorifera DSM 4582]
gi|291422843|gb|EFE96080.1| ribonuclease HII [Serratia odorifera DSM 4582]
Length = 202
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 50/180 (27%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC-KE 99
C+ G+DE GRGP++G +V TA D + +G ADSK L+EK+R + D I K
Sbjct: 12 CIAGVDEVGRGPLVGAVV--TAAVILDPARPI---VGLADSKKLSEKRRLALYDEIIDKA 66
Query: 100 NAW-LGWM--VEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
AW LG EI S N++ +ML Q+ A GL
Sbjct: 67 QAWSLGRAEPAEIDSLNILHATMLAMQR---------AVAGL------------------ 99
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
I P+L++ ++ P+ A+ K DS + AASI AKV+RD
Sbjct: 100 ------------AITPDLVLIDGNRC-PKLPMRSQAVV-KGDSRVAEISAASILAKVTRD 145
>gi|423111362|ref|ZP_17099056.1| ribonuclease HII [Klebsiella oxytoca 10-5243]
gi|423112619|ref|ZP_17100310.1| ribonuclease HII [Klebsiella oxytoca 10-5245]
gi|376376561|gb|EHS89338.1| ribonuclease HII [Klebsiella oxytoca 10-5243]
gi|376390996|gb|EHT03678.1| ribonuclease HII [Klebsiella oxytoca 10-5245]
Length = 198
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 48/214 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP++G +V TA D + +G DSK L+EK+R + D I KE A
Sbjct: 12 VAGVDEVGRGPLVGAVV--TAAVILDPARPI---VGLNDSKKLSEKRRLALFDEI-KEKA 65
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+C S+ R + + ++E++ H + + R V AG+ V
Sbjct: 66 -------------LCWSLGRAEPHEIDELNILHATMLAMQRAV--AGLRVS--------- 101
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
PE ++ ++ PV A+ K DS + AASI AKV+RD+ +
Sbjct: 102 ------------PEFVLIDGNRC-PPLPVPSLAVV-KGDSRVAEISAASILAKVTRDAEM 147
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
+ Q A GYP +K L +
Sbjct: 148 AALDRQ--FPQYGFAQHKGYPTAFHLQKLLEHGV 179
>gi|228986980|ref|ZP_04147106.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228772758|gb|EEM21198.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 257
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P+D G DSK L+E KRD D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPED-----FYIPGLNDSKKLSEAKRDRFYDEIKVQAI 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+SP VI
Sbjct: 129 AIG--VGIVSPQVI 140
>gi|423623087|ref|ZP_17598865.1| ribonuclease HII [Bacillus cereus VD148]
gi|401259860|gb|EJR66034.1| ribonuclease HII [Bacillus cereus VD148]
Length = 257
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDD-----FYIPGLDDSKKLSEAKRERFYDEIKAQAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS P+ ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPQYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|398859863|ref|ZP_10615528.1| ribonuclease HII [Pseudomonas sp. GM79]
gi|398235799|gb|EJN21606.1| ribonuclease HII [Pseudomonas sp. GM79]
Length = 213
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D + +L G DSK LTE +RD + D IC++
Sbjct: 22 VAGVDEVGRGPLCGAVV--TAAVILDPSRPIL---GLNDSKKLTEARRDALYDEICEKA- 75
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W V EI N++ +ML Q+ A GL
Sbjct: 76 -LSWYVARAEVEEIDELNILHATMLAMQR---------AVEGL----------------- 108
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+ KL+ I ++ +A++ + D P + AASI AKVSR
Sbjct: 109 ------HIQPKLAMIDGNRCPKLSMRAEAVI---------QGDGKVPAIAAASILAKVSR 153
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 154 DREMAAFEL 162
>gi|398310702|ref|ZP_10514176.1| ribonuclease HII [Bacillus mojavensis RO-H-1]
Length = 255
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P E + LG DSK LTEKKR++ D I KE
Sbjct: 74 IAGVDEVGRGPLAGPVVASAVILP-----EECEILGLTDSKKLTEKKREEYYDLIMKEAV 128
Query: 102 WLGWMVEIISPNVI 115
+G + I+ VI
Sbjct: 129 AVG--IGIVEAAVI 140
>gi|357636534|ref|ZP_09134409.1| ribonuclease HII [Streptococcus macacae NCTC 11558]
gi|357584988|gb|EHJ52191.1| ribonuclease HII [Streptococcus macacae NCTC 11558]
Length = 257
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 40/188 (21%)
Query: 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDS 95
K + GIDE GRGP+ GP+V P+ + K G DSK + +KK + I
Sbjct: 66 AKGYQYIAGIDEVGRGPLAGPVVAACVILPR-----MSKIKGLNDSKQIPKKKHEAIYQR 120
Query: 96 ICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+ K+ +G ++ N M+ + ++ E S A + I+++
Sbjct: 121 VLKKALSVGI-------GIVSNQMI--DQINIYEASRLAMLQAIKQL------------- 158
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
EI P+ ++ A DS P K D+ + AASI AKV+R
Sbjct: 159 ----------SKDEIKPDYLLIDAMHIDSAIPQRSII---KGDAKSMSIAAASIVAKVTR 205
Query: 216 DSALKSWT 223
D + +
Sbjct: 206 DKLMADYN 213
>gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
gi|39932431|sp|Q8R9X9.1|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
Length = 241
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 50/185 (27%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP++GP+V PK E + + DSK L E+KR+ + + I KE
Sbjct: 59 IAGVDEAGRGPLVGPVVAACVILPK---EIFIPEIN--DSKKLPEEKREKLAEVIKKEAI 113
Query: 102 WLGWMV----EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
G + EI N++ N+ L+ K ++ EV + + VD +
Sbjct: 114 SYGIGIVDCREIDEINIL-NATLKAMKKAIFEVKE---------------KIEYLLVDAI 157
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P+ K+L P+V K DS + AASI AKV RD
Sbjct: 158 SIPDMPIKQL-------------------PIV------KGDSKSISIAAASILAKVERDR 192
Query: 218 ALKSW 222
++ +
Sbjct: 193 IMREY 197
>gi|298245602|ref|ZP_06969408.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963]
gi|297553083|gb|EFH86948.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963]
Length = 223
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 45/186 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEE--LLKNLGCADSKALTEKKRDDILDSICKE 99
+ G+DEAGRG + GP+V P ++N L + G DSK L E R+ + D I +
Sbjct: 25 IAGLDEAGRGCLAGPVVAAAVILPLESNPTPVLARFTGVNDSKQLNEATRERLYDVIMEH 84
Query: 100 NAWLG---WMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+G VE+I I + L+ + +L +++ A + ++ V +R++ +
Sbjct: 85 ALAVGVGIGSVELIDQRNILQATLQSMRVALTQLTPTA-----QALLLDAVRLRDIPL-- 137
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P+L +T K DS + AASI AKV+RD
Sbjct: 138 ---------------PQLSLT------------------KGDSRCLSIAAASIIAKVTRD 164
Query: 217 SALKSW 222
+
Sbjct: 165 RLMHQL 170
>gi|415717761|ref|ZP_11466996.1| ribonuclease HII [Gardnerella vaginalis 1500E]
gi|388060644|gb|EIK83328.1| ribonuclease HII [Gardnerella vaginalis 1500E]
Length = 234
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 19 SNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGC 78
S DN ++L+ C+ ++G+DE GRG + GP++ G A K+ EE G
Sbjct: 13 SLDNEKSLL--------CEGYDWIIGLDEVGRGSLAGPVMVGAAAICKNQIEEQTIPEGL 64
Query: 79 ADSKALTEKKRDDILDSICK 98
ADSK LTE++R+D+ + + K
Sbjct: 65 ADSKLLTERRREDLFNPLQK 84
>gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
gi|47017708|gb|EAL08502.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
Length = 204
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + ++I KE
Sbjct: 16 IAGVDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALFETIKKEAI 70
Query: 102 WLGWMVEIISPNVI 115
+G V II +VI
Sbjct: 71 AIG--VGIIEHDVI 82
>gi|407692884|ref|YP_006817673.1| ribonuclease HII [Actinobacillus suis H91-0380]
gi|407388941|gb|AFU19434.1| ribonuclease HII [Actinobacillus suis H91-0380]
Length = 197
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 46/181 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V +N E G ADSK L+EKKR
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLADSKKLSEKKRL---------- 56
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
+ E I +C S+ R + +++++ H + + R V AG+N++
Sbjct: 57 ----LLAEEIKAKALCWSLGRAEPEEIDQLNILHATMLAMQRAV--AGLNIQ-------- 102
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P+ ++ ++ T P+ A+ K DS + AASI AKV+RD
Sbjct: 103 -------------PDFVLVDGNRI-PTLPMPAQAVI-KGDSLVAEISAASILAKVARDQE 147
Query: 219 L 219
+
Sbjct: 148 M 148
>gi|322515100|ref|ZP_08068107.1| ribonuclease HII [Actinobacillus ureae ATCC 25976]
gi|322118906|gb|EFX91088.1| ribonuclease HII [Actinobacillus ureae ATCC 25976]
Length = 197
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 42/179 (23%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V +N E G ADSK L+EKKR
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLADSKKLSEKKRL---------- 56
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ E I +C S+ R + +++++ A L + AG+N
Sbjct: 57 ----LLAEEIKAKALCWSLGRAEPEEIDQLNILHATMLAMQRAVAGLN------------ 100
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
I+P+ ++ V T P+ A+ K DS + AASI AKV+RD +
Sbjct: 101 ---------IWPDFVL-VDGNHIPTLPMPAQAVI-KGDSLVAEISAASILAKVARDQEM 148
>gi|46143677|ref|ZP_00134750.2| COG0164: Ribonuclease HII [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|126207617|ref|YP_001052842.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|303251953|ref|ZP_07338124.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|166225164|sp|A3MYK1.1|RNH2_ACTP2 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|126096409|gb|ABN73237.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|302649383|gb|EFL79568.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
Length = 197
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 46/187 (24%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V +N E G ADSK L+EKKR
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILAPNNPIE-----GLADSKKLSEKKRL---------- 56
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
+ E I +C S+ R + ++ ++ H + + R V AG+N++
Sbjct: 57 ----LLAEEIKAKALCWSLGRAEPEEIDRLNILHATMLAMQRAV--AGLNIQ-------- 102
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P+ ++ ++ T P+ A+ K DS + AASI AKV+RD
Sbjct: 103 -------------PDFVLVDGNRI-PTLPMPAQAVI-KGDSLVAEISAASILAKVARDQE 147
Query: 219 LKSWTFQ 225
+ Q
Sbjct: 148 MAELDVQ 154
>gi|352517744|ref|YP_004887061.1| ribonuclease HII [Tetragenococcus halophilus NBRC 12172]
gi|348601851|dbj|BAK94897.1| ribonuclease HII [Tetragenococcus halophilus NBRC 12172]
Length = 255
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 45/190 (23%)
Query: 35 SCKSQ--PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI 92
SC Q + GIDE GRGP+ GP+V P+ + + LG DSK L+EKKR D
Sbjct: 65 SCYKQGHHLIAGIDEVGRGPLAGPVVAAAVILPEGS-----EILGLNDSKQLSEKKRLD- 118
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
LD+ KE A + EI + + ++ + K ++ + + A+ +I A +
Sbjct: 119 LDNKIKEQATAIGIGEISAEQIDQVNIYQASKMAMTKAVENLAVKADHLLIDA------M 172
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
+D P E II K D+ + AASI AK
Sbjct: 173 SIDINIPQEK------------II-------------------KGDARSVSIAAASIIAK 201
Query: 213 VSRDSALKSW 222
V RD +K +
Sbjct: 202 VYRDQLMKEY 211
>gi|307244937|ref|ZP_07527034.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307247112|ref|ZP_07529164.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307253891|ref|ZP_07535743.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258345|ref|ZP_07540086.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306854102|gb|EFM86310.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306856361|gb|EFM88512.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306863095|gb|EFM95037.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306867529|gb|EFM99376.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 186
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 54/236 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V +N E G ADSK L+EKKR
Sbjct: 1 MIAGVDEVGRGPLVGAVVTAAVILAPNNPIE-----GLADSKKLSEKKRL---------- 45
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
+ E I +C S+ R + ++ ++ H + + R V AG+N++
Sbjct: 46 ----LLAEEIKAKALCWSLGRAEPEEIDRLNILHATMLAMQRAV--AGLNIQ-------- 91
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P+ ++ ++ T P+ A+ K DS + AASI AKV+RD
Sbjct: 92 -------------PDFVLVDGNRI-PTLPMPAQAVI-KGDSLVAEISAASILAKVARDQE 136
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ Q A GYP K E ++ FG R S++ KIL
Sbjct: 137 MAELDVQ--YPEYGFAKHKGYP-----TKLHFEKLEQ-FGATPFHRKSFAPVKKIL 184
>gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29]
gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3]
gi|407706296|ref|YP_006829881.1| hypothetical protein MC28_3060 [Bacillus thuringiensis MC28]
gi|423378324|ref|ZP_17355608.1| ribonuclease HII [Bacillus cereus BAG1O-2]
gi|423448342|ref|ZP_17425221.1| ribonuclease HII [Bacillus cereus BAG5O-1]
gi|423464506|ref|ZP_17441274.1| ribonuclease HII [Bacillus cereus BAG6O-1]
gi|423540883|ref|ZP_17517274.1| ribonuclease HII [Bacillus cereus HuB4-10]
gi|423547121|ref|ZP_17523479.1| ribonuclease HII [Bacillus cereus HuB5-5]
gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3]
gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29]
gi|401128936|gb|EJQ36619.1| ribonuclease HII [Bacillus cereus BAG5O-1]
gi|401172071|gb|EJQ79292.1| ribonuclease HII [Bacillus cereus HuB4-10]
gi|401178842|gb|EJQ86015.1| ribonuclease HII [Bacillus cereus HuB5-5]
gi|401636590|gb|EJS54344.1| ribonuclease HII [Bacillus cereus BAG1O-2]
gi|402420773|gb|EJV53044.1| ribonuclease HII [Bacillus cereus BAG6O-1]
gi|407383981|gb|AFU14482.1| Ribonuclease [Bacillus thuringiensis MC28]
Length = 257
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 43/179 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V P D G DSK L+E KR+ D I +
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDD-----FYIPGLDDSKKLSEAKRERFYDEIKAQAI 128
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G V I+SP VI +E++ A ++ +D V
Sbjct: 129 AIG--VGIVSPQVI------------DEINIYQA-------------TKQAMLDAVA--- 158
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS P+ ++ A K ++ P K D+ + AASI AKV+RD +K
Sbjct: 159 ----NLS-CTPQYLLIDAMKLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDRMMK 209
>gi|422937457|ref|ZP_16966749.1| ribonuclease HII [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339890922|gb|EGQ79975.1| ribonuclease HII [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 214
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 48/186 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V A K+ +EEL + DSK LTEKKR+ + D I K N
Sbjct: 19 VIGVDEAGRGPLAGPVV-AAAVILKEYSEELDE---INDSKKLTEKKREKLYDIIMK-NF 73
Query: 102 WLGW---MVEIISPNVICNS---MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
++ VE I I N+ +RR L + D
Sbjct: 74 YVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKD---------------------- 111
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
KK + + + + + P+V K D+ V AASI AKV+R
Sbjct: 112 ---------KKEYIVLVDGNLKIKEYSGKQLPIV------KGDAKSLSVAAASIIAKVTR 156
Query: 216 DSALKS 221
D +K
Sbjct: 157 DRLMKD 162
>gi|71065472|ref|YP_264199.1| ribonuclease HII [Psychrobacter arcticus 273-4]
gi|97189215|sp|Q4FT93.1|RNH2_PSYA2 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|71038457|gb|AAZ18765.1| probable ribonuclease HII [Psychrobacter arcticus 273-4]
Length = 287
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 120/272 (44%), Gaps = 56/272 (20%)
Query: 5 HTASNVTEVESCIRSNDNSRNLI--------------------ISSTIPESCKSQPCVLG 44
HT SN+ +VE I D I S I +S +G
Sbjct: 6 HTESNILQVERNIEQIDIKGQYINLASPIHLSGQINITELFAEYSKNIAQSDTGSALQIG 65
Query: 45 IDEAGRGPVLGPMVYGTAYCPKDNN----EELLKNLGCA---DSKALTEKKRDDILDSIC 97
+DEAGRGP+LG + +A P+ + +LLK+ + DSK L+EKKR D+L +
Sbjct: 66 VDEAGRGPLLGSVNVASAILPRAWSGLIEAQLLKDTPLSILTDSKQLSEKKR-DLLYPLV 124
Query: 98 KENAWLGWMVEIISPNVICN-SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
++ A +G+++ I VI ++L+ + + ++ +VIA +N ++ D
Sbjct: 125 QQYA-IGYIIADIPAAVIDQINILQATMLGMRLCTE-----ILLEVIAHHLN--DMAQDI 176
Query: 157 VGPPESYKKKLSEIF-----PELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
++ + + +F PEL T ++ ++ K D+ + + AASI A
Sbjct: 177 ------HQLQTAVLFDGNRCPELNYTSLAQLGIKESMIDCQAWVKGDARHTSIAAASILA 230
Query: 212 KVSRDS---ALKSWTFQEGIQIENNAWGSGYP 240
KVSRD AL + + GI A GYP
Sbjct: 231 KVSRDKTMYALDTEHPEYGI-----AKHKGYP 257
>gi|386067677|ref|YP_005982981.1| ribonuclease HII [Pseudomonas aeruginosa NCGM2.S1]
gi|348036236|dbj|BAK91596.1| ribonuclease HII [Pseudomonas aeruginosa NCGM2.S1]
Length = 201
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 83/200 (41%), Gaps = 50/200 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V TA D + +L G DSK L E +R+ + + I +E A
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPSRPIL---GLNDSKKLREARREALFEEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R V V R +D
Sbjct: 68 -LAW----------CIARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 ------GNRCPKLAVPSA-------PVV------KGDSQVPAIAAASILAKVSRD----- 146
Query: 222 WTFQEGIQIENNAWGSGYPG 241
+E ++++ G G G
Sbjct: 147 ---REMVELDRVYPGYGMAG 163
>gi|425078282|ref|ZP_18481385.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425088914|ref|ZP_18492007.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405590143|gb|EKB63677.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405600052|gb|EKB73219.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 199
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 48/201 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP++G +V TA D + + +G DSK L+EK+R + D I KE A
Sbjct: 12 VAGVDEVGRGPLVGAVV--TAAVILDPAKPI---VGLNDSKKLSEKRRLVLFDEI-KEKA 65
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVGP 159
+C S+ R + + ++E++ H + + R V AG++
Sbjct: 66 -------------LCWSLGRAEPHEIDELNILHATMLAMQRAV--AGLS----------- 99
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
I PE ++ ++ S P+ A+ K DS + AASI AKV+RD+ +
Sbjct: 100 ----------IVPEFVLIDGNRCPS-LPMPSQAVV-KGDSRVAEISAASILAKVTRDAEM 147
Query: 220 KSWTFQEGIQIENNAWGSGYP 240
T A GYP
Sbjct: 148 A--TLDLAFPHYGFAQHKGYP 166
>gi|375090526|ref|ZP_09736840.1| ribonuclease HIII [Facklamia languida CCUG 37842]
gi|374565287|gb|EHR36558.1| ribonuclease HIII [Facklamia languida CCUG 37842]
Length = 310
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 15/171 (8%)
Query: 29 SSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKK 88
+S++P +Q ++G DE G G GP+ Y KD ++ ++ LG DSK L++++
Sbjct: 78 ASSLPSEI-AQWTLIGSDEVGNGSYFGPLTVCAVYLDKD-QQKAVRKLGVQDSKKLSDQQ 135
Query: 89 RDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVS---HDAAIGLIRKVIAA 145
I + + + + + I++P+ N + Q Y N + HD + +R ++
Sbjct: 136 IHQIAQQLIQT---VPYHLTIVNPHKY-NQL--TQSYHANAIKVKLHDFTLQKLRAKLSK 189
Query: 146 GV--NVREVYVDTVGPPESYKKKLSEIFPEL--IITVASKADSTYPVVGAA 192
+++ + +D P ++Y + L E P+ I A KA+S + V A
Sbjct: 190 QEKDDLQGILIDQFTPKKNYYQLLGETMPDYQPITYFAQKAESIHLAVACA 240
>gi|260495645|ref|ZP_05815769.1| ribonuclease HII [Fusobacterium sp. 3_1_33]
gi|260196828|gb|EEW94351.1| ribonuclease HII [Fusobacterium sp. 3_1_33]
Length = 214
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 48/186 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V A K+ +EEL + DSK LTEKKR+ + D I K N
Sbjct: 19 VIGVDEAGRGPLAGPVV-AAAVILKEYSEELDE---INDSKKLTEKKREKLYDIIMK-NF 73
Query: 102 WLGW---MVEIISPNVICNS---MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
++ VE I I N+ +RR L + D
Sbjct: 74 YVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKD---------------------- 111
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
KK + + + + + P+V K D+ V AASI AKV+R
Sbjct: 112 ---------KKEYIVLVDGNLKIKEYSGKQLPIV------KGDAKSLSVAAASIIAKVTR 156
Query: 216 DSALKS 221
D +K
Sbjct: 157 DRLMKD 162
>gi|119898186|ref|YP_933399.1| ribonuclease HII [Azoarcus sp. BH72]
gi|166225166|sp|A1K6Q7.1|RNH2_AZOSB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119670599|emb|CAL94512.1| Ribonuclease H [Azoarcus sp. BH72]
Length = 204
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 79/190 (41%), Gaps = 54/190 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V + G ADSK LTE+ RD L + +E A
Sbjct: 10 ICGVDEAGRGPLCGPVVAAAVILDPARPID-----GLADSKKLTERARDR-LAPLIRERA 63
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W V EI N++ +ML Q R V A V EV +D
Sbjct: 64 -LAWAVAEASVEEIDRLNILHATMLAMQ----------------RAVSALSVLPGEVLID 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P + V ++A VVG D++ P + AASI AK R
Sbjct: 107 GNRCP--------------TLAVPARA-----VVG------GDASEPAISAASILAKTVR 141
Query: 216 DSALKSWTFQ 225
D+ +K+ Q
Sbjct: 142 DAGMKALHEQ 151
>gi|262067279|ref|ZP_06026891.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
gi|291379005|gb|EFE86523.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
Length = 217
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 81/188 (43%), Gaps = 44/188 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE-N 100
V+G+DEAGRGP+ GP+V A K +EEL + DSK LTEKKR+ + D I N
Sbjct: 15 VIGVDEAGRGPLAGPVV-AAAVILKQYSEELDE---INDSKKLTEKKREKLYDIILNNFN 70
Query: 101 AWLGWM-VEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTV 157
+G VE I I N+ + +L ++ H+A I V VD
Sbjct: 71 VAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEANKDYI------------VLVDGN 118
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ Y+ K PVV K D+ + AASI AKV+RD
Sbjct: 119 LKIKEYEGK------------------QLPVV------KGDAKSLSIAAASIIAKVTRDR 154
Query: 218 ALKSWTFQ 225
+K +
Sbjct: 155 IMKGLGLK 162
>gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131]
gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131]
Length = 197
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 79/178 (44%), Gaps = 42/178 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP++G +V TA D N ++ G ADSK LTEKKR+ + D I +E A
Sbjct: 11 IAGVDEVGRGPLVGAVV--TAAVILDPNNPII---GLADSKKLTEKKREKLFDEI-QEKA 64
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W + P I N + H + + R V AG++
Sbjct: 65 -LCWCIGRAEPEEIDNI----------NILHATMLAMQRAV--AGLS------------- 98
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
I PE ++ ++ P+ A+ K DS + AASI AKV RD +
Sbjct: 99 --------IIPEYVLIDGNRC-PELPMPSQAVI-KGDSLVQEISAASILAKVIRDREM 146
>gi|452855552|ref|YP_007497235.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452079812|emb|CCP21570.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 255
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V G P + + LG DSK L+EKK ++ I +E A
Sbjct: 74 IAGVDEAGRGPLAGPVVAGAVILPAE-----CEILGLTDSKKLSEKKLEEYYSRIAEEAA 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+ +VI
Sbjct: 129 AVG--VGIVHADVI 140
>gi|392989831|ref|YP_006488424.1| ribonuclease HII [Enterococcus hirae ATCC 9790]
gi|392337251|gb|AFM71533.1| ribonuclease HII [Enterococcus hirae ATCC 9790]
Length = 206
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 87/216 (40%), Gaps = 47/216 (21%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V PKD LG DSK L+EKKR+ + D I ++
Sbjct: 24 IAGIDEVGRGPLAGPVVAAAVILPKDE-----PILGLNDSKQLSEKKRELLYDQIQQKAL 78
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G + II I + ++ E S A I + K+
Sbjct: 79 AIG--IGIIDEKKI-------DEVNIYEASKLAMIQAVEKL------------------- 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
I P ++ A D P+ + K D+ + AASI AKV RD +K
Sbjct: 111 -------AIRPNYLLIDAMTLD--LPIQQEKLI-KGDARSVSIAAASIIAKVYRDDLMKK 160
Query: 222 WT-FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPV 256
+ G +NA GY + ++ I P+
Sbjct: 161 YDELYPGYGFGHNA---GYGTKEHLQGLATQGITPI 193
>gi|422409471|ref|ZP_16486432.1| ribonuclease HII, partial [Listeria monocytogenes FSL F2-208]
gi|313609088|gb|EFR84798.1| ribonuclease HII [Listeria monocytogenes FSL F2-208]
Length = 142
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + ++I E
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALYETIQTEAI 127
Query: 102 WLGWMVEIISPNVI 115
+G V II NVI
Sbjct: 128 AVG--VGIIEHNVI 139
>gi|165975585|ref|YP_001651178.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|190149400|ref|YP_001967925.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|303249833|ref|ZP_07336037.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|238687515|sp|B0BS34.1|RNH2_ACTPJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|238692371|sp|B3GZX1.1|RNH2_ACTP7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|165875686|gb|ABY68734.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|189914531|gb|ACE60783.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|302651400|gb|EFL81552.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 197
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 94/234 (40%), Gaps = 50/234 (21%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V +N E G ADSK L+EKKR
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLADSKKLSEKKRL---------- 56
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ E I +C S+ R + ++ ++ A L + AG+N++
Sbjct: 57 ----LLAEEIKAKALCWSLGRAEPEEIDRLNILHATMLAMQRAVAGLNIQ---------- 102
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+ ++ ++ T P+ A+ K DS + AASI AKV+RD +
Sbjct: 103 -----------PDFVLVDGNRI-PTLPMPAQAVI-KGDSLVAEISAASILAKVARDQEMA 149
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
Q A GYP K E ++ FG R S++ KIL
Sbjct: 150 ELDVQ--YPEYGFAKHKGYP-----TKLHFEKLEQ-FGATPFHRKSFAPVKKIL 195
>gi|405755403|ref|YP_006678867.1| ribonuclease HII [Listeria monocytogenes SLCC2540]
gi|404224603|emb|CBY75965.1| ribonuclease HII [Listeria monocytogenes SLCC2540]
Length = 261
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + ++I KE
Sbjct: 73 IAGMDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALFETIKKEAI 127
Query: 102 WLGWMVEIISPNVI 115
+G V II +VI
Sbjct: 128 AIG--VGIIEHDVI 139
>gi|399003082|ref|ZP_10705753.1| ribonuclease HII [Pseudomonas sp. GM18]
gi|398123486|gb|EJM13035.1| ribonuclease HII [Pseudomonas sp. GM18]
Length = 213
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 103/249 (41%), Gaps = 64/249 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D + +L G DSK LTE +R+ + D IC++
Sbjct: 22 VAGVDEVGRGPLCGAVV--TAAVILDPSRPIL---GLNDSKKLTEARREKLYDEICEKA- 75
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 76 -LSWCIARAEVEEIDELNILHATMLAMQR---------AVEGL----------------- 108
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+ KL+ I ++ +A++ + DS P + AASI AKVSR
Sbjct: 109 ------HIQPKLAMIDGNRCPKLSMRAEAVV---------QGDSKVPAIAAASILAKVSR 153
Query: 216 DSALKSWTF-QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
D + ++ G I + GYP PV + L+ G + R S++
Sbjct: 154 DREMAAFELIYPGYGIGGH---KGYP-TPVHLEALTR-----LGPTPIHRRSFAPVRLAY 204
Query: 275 KEKAVLVEG 283
+ + L+EG
Sbjct: 205 EARENLIEG 213
>gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591]
gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591]
Length = 198
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 13/90 (14%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ G+DE GRGP++G +V TA D N + +G ADSK L+EK+R + D I +E
Sbjct: 12 CIAGVDEVGRGPLVGAVV--TAAVILDPNRPI---VGLADSKTLSEKRRLALYDEI-REK 65
Query: 101 AWLGWMV------EIISPNVICNSMLRRQK 124
A L W + EI + N++ +ML Q+
Sbjct: 66 A-LAWSLGRAEPEEIDTLNILHATMLAMQR 94
>gi|417846000|ref|ZP_12492015.1| Ribonuclease HII [Haemophilus haemolyticus M21639]
gi|341953707|gb|EGT80209.1| Ribonuclease HII [Haemophilus haemolyticus M21639]
Length = 197
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 98/243 (40%), Gaps = 61/243 (25%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++GP+V +N E G ADSK L+EKKR + + I KE
Sbjct: 10 LIAGVDEVGRGPLVGPVVTAAVILDPNNPIE-----GLADSKKLSEKKRLALAEEI-KEK 63
Query: 101 AWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
A L W + EI N++ S+L + R V
Sbjct: 64 A-LAWALGRAEANEIDKINILQASLL----------------AMTRAV------------ 94
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
K +I P ++ +K + A+ K DS + AASI AKV+
Sbjct: 95 -----------KSLKIQPHFVLVDGNKIPKDLDIPAQAVV-KGDSLVAEISAASILAKVA 142
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
RD ++ Q A GYP TK L E + + PQ R S++ K+L
Sbjct: 143 RDQEMEELDKQ--YPEYAFAQHKGYP----TKLHL-EKLAELGALPQH-RRSFAPVKKVL 194
Query: 275 KEK 277
+ +
Sbjct: 195 ENR 197
>gi|384265189|ref|YP_005420896.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898185|ref|YP_006328481.1| ribonuclease HII [Bacillus amyloliquefaciens Y2]
gi|380498542|emb|CCG49580.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172295|gb|AFJ61756.1| ribonuclease HII [Bacillus amyloliquefaciens Y2]
Length = 255
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V G P + + LG DSK L+EKK ++ I +E A
Sbjct: 74 IAGVDEAGRGPLAGPVVAGAVILPAE-----CEILGLTDSKKLSEKKLEEYYSRITEEAA 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+ +VI
Sbjct: 129 AVG--VGIVHADVI 140
>gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
Length = 236
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 50/185 (27%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP++GP+V PK E + + DSK L E+KR+ + + I KE
Sbjct: 54 IAGVDEAGRGPLVGPVVAACVILPK---EIFIPEIN--DSKKLPEEKREKLAEVIKKEAI 108
Query: 102 WLGWMV----EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
G + EI N++ N+ L+ K ++ EV + + VD +
Sbjct: 109 SYGIGIVDCREIDEINIL-NATLKAMKKAIFEVKE---------------KIEYLLVDAI 152
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
P+ K+L P+V K DS + AASI AKV RD
Sbjct: 153 SIPDMPIKQL-------------------PIV------KGDSKSISIAAASILAKVERDR 187
Query: 218 ALKSW 222
++ +
Sbjct: 188 IMREY 192
>gi|452747328|ref|ZP_21947125.1| ribonuclease HII [Pseudomonas stutzeri NF13]
gi|452008849|gb|EME01085.1| ribonuclease HII [Pseudomonas stutzeri NF13]
Length = 212
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC-KEN 100
V G+DE GRGP+ GP+V TA D + G DSK L+E +R+ + D IC K
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPARPI---KGLNDSKKLSEARREALFDEICEKAV 68
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
AW C + ++ + H + + R V V R +D
Sbjct: 69 AW-------------CIARAEVEEIDQLNILHATMLAMQRAVDGLSVTPRLALID----- 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+L + A PV+ + D P + AASI AKVSRD ++
Sbjct: 111 -------GNRCPQLNVPSA-------PVI------QGDGQVPAIAAASILAKVSRDREMQ 150
Query: 221 SWTF 224
+
Sbjct: 151 ALDL 154
>gi|307249333|ref|ZP_07531327.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|307251656|ref|ZP_07533561.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307256154|ref|ZP_07537941.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|307262716|ref|ZP_07544344.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|306858627|gb|EFM90689.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306860853|gb|EFM92861.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306865335|gb|EFM97231.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306871971|gb|EFN03687.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 186
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 54/236 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V +N E G ADSK L+EKKR
Sbjct: 1 MIAGVDEVGRGPLVGAVVTAAVILDPNNPIE-----GLADSKKLSEKKRL---------- 45
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
+ E I +C S+ R + ++ ++ H + + R V AG+N++
Sbjct: 46 ----LLAEEIKAKALCWSLGRAEPEEIDRLNILHATMLAMQRAV--AGLNIQ-------- 91
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
P+ ++ ++ T P+ A+ K DS + AASI AKV+RD
Sbjct: 92 -------------PDFVLVDGNRI-PTLPMPAQAVI-KGDSLVAEISAASILAKVARDQE 136
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ Q A GYP K E ++ FG R S++ KIL
Sbjct: 137 MAELDVQ--YPEYGFAKHKGYP-----TKLHFEKLEQ-FGATPFHRKSFAPVKKIL 184
>gi|255067201|ref|ZP_05319056.1| ribonuclease HII [Neisseria sicca ATCC 29256]
gi|255048569|gb|EET44033.1| ribonuclease HII [Neisseria sicca ATCC 29256]
Length = 197
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 41/179 (22%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DEAGRGP++G + P + G DSK L+EKKR D L + KE
Sbjct: 6 LIAGVDEAGRGPLVGSVFAAAVILPPSYHLP-----GLTDSKKLSEKKR-DTLAVLIKEQ 59
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L W V P I + LN + H + + R V + +V++D P
Sbjct: 60 A-LAWCVAQADPQEI---------FELN-ILHATMLAMSRAVHGLAIKPDKVFIDGNRVP 108
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
++ V A K DS + AAS+ AK +RD+ +
Sbjct: 109 KALG------------------------VDAEAVVKGDSKIMEISAASVLAKTARDAEM 143
>gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
15053]
gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
15053]
Length = 219
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDE GRGP+ GP+V G PKD+ L DSK L+EKKR+ + D I ++
Sbjct: 39 ICGIDEVGRGPLAGPVVAGAVILPKDD-----PVLYLNDSKKLSEKKREMLYDEIMEKAV 93
Query: 102 WLGWMVEIISPNVI 115
G + I+ P I
Sbjct: 94 ATG--IGIVGPQRI 105
>gi|398852014|ref|ZP_10608686.1| ribonuclease HII [Pseudomonas sp. GM80]
gi|398984052|ref|ZP_10690361.1| ribonuclease HII [Pseudomonas sp. GM24]
gi|399011323|ref|ZP_10713655.1| ribonuclease HII [Pseudomonas sp. GM16]
gi|398118065|gb|EJM07805.1| ribonuclease HII [Pseudomonas sp. GM16]
gi|398156169|gb|EJM44593.1| ribonuclease HII [Pseudomonas sp. GM24]
gi|398245302|gb|EJN30825.1| ribonuclease HII [Pseudomonas sp. GM80]
Length = 208
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE KR+ + D I +++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEAKREKLYDEIIEKS- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ AG++++
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQRA------------------VAGLHIQ----- 106
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
P+L + ++ P+ A+ + D P + AASI AKVSR
Sbjct: 107 ----------------PKLAMIDGNRC-PQLPMRAEAVV-QGDGKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|299147105|ref|ZP_07040172.1| ribonuclease HII [Bacteroides sp. 3_1_23]
gi|298514990|gb|EFI38872.1| ribonuclease HII [Bacteroides sp. 3_1_23]
Length = 200
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 66/176 (37%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G DEAGRG + G + PKD ELL DSK LTEK+R + + I KE +
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFKNELLN-----DSKQLTEKQRYALREVIEKEA--I 66
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V I+SP I + R + + + R V + + +D
Sbjct: 67 AWAVGIVSPEEIDEINILRASF----------LAMHRAVDQLSTRPQHLLID-------- 108
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ YP V K D Y + AASI AK RD +
Sbjct: 109 ----------------GNRFTKYPGVPHTTVVKGDGKYLSIAAASILAKTYRDDYM 148
>gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14]
Length = 252
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 44/182 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+V G PKD + L DSK L+ KR+++ D I
Sbjct: 72 ICGIDEAGRGPLAGPVVAGAVILPKD-----CEILYLNDSKKLSAAKREELYDEI----- 121
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV-IAAGVNVREVYVDTVGPP 160
M + ++ V S R + ++ + +++A I K+ + G+ + D V P
Sbjct: 122 ----MEKAVAAAVGMASPARIDEINILQATYEAMREAISKLAVEPGILLN----DAVTIP 173
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E I P++ P++ K D+ + AASI AKV+RD +
Sbjct: 174 EM-------IIPQV------------PII------KGDAKSVSIAAASILAKVTRDRLMV 208
Query: 221 SW 222
+
Sbjct: 209 EY 210
>gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aeruginosa PAO1]
gi|418586123|ref|ZP_13150169.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P1]
gi|418589449|ref|ZP_13153371.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P2]
gi|421518185|ref|ZP_15964859.1| ribonuclease HII [Pseudomonas aeruginosa PAO579]
gi|451987778|ref|ZP_21935930.1| Ribonuclease HII [Pseudomonas aeruginosa 18A]
gi|37999786|sp|Q9HXY9.1|RNH2_PSEAE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|9949802|gb|AAG07030.1|AE004784_3 ribonuclease HII [Pseudomonas aeruginosa PAO1]
gi|375043797|gb|EHS36413.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P1]
gi|375051683|gb|EHS44149.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P2]
gi|404347667|gb|EJZ74016.1| ribonuclease HII [Pseudomonas aeruginosa PAO579]
gi|451754537|emb|CCQ88453.1| Ribonuclease HII [Pseudomonas aeruginosa 18A]
Length = 201
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V TA D + +L G DSK L+E +R+ + + I +E A
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPSRPIL---GLNDSKKLSEARREALFEEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R V V R +D
Sbjct: 68 -LAW----------CIARAEVEEIDRLNILHATMLAMQRAVEGLSVIPRLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVV K DS P + AASI AKVSRD
Sbjct: 111 ------GNRCPKLAVPCA-------PVV------KGDSQVPAIAAASILAKVSRD----- 146
Query: 222 WTFQEGIQIENNAWGSGYPG 241
+E ++++ G G G
Sbjct: 147 ---REMVELDRVYPGYGMAG 163
>gi|56460771|ref|YP_156052.1| ribonuclease HII [Idiomarina loihiensis L2TR]
gi|81363280|sp|Q5QZK7.1|RNH2_IDILO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|56179781|gb|AAV82503.1| Ribonuclease HII [Idiomarina loihiensis L2TR]
Length = 187
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 77/187 (41%), Gaps = 54/187 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G DEAGRGP+ GP+V DN E G DSK L+EKKR+ + I KE A
Sbjct: 2 ICGTDEAGRGPIAGPVVAAAVILDPDNPIE-----GLNDSKKLSEKKREKLSLEI-KEKA 55
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI + N++ SM Q R V A V V VD
Sbjct: 56 -LYWAIAQSDPDEIEAINILWASMKAMQ----------------RAVEALPVKPDMVLVD 98
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
PE + V +KA +VG D++ + AASI AKV R
Sbjct: 99 GNRVPE--------------LKVPAKA-----IVGG------DASEQCIAAASILAKVER 133
Query: 216 DSALKSW 222
D + W
Sbjct: 134 DRQMLKW 140
>gi|394993945|ref|ZP_10386684.1| ribonuclease HII [Bacillus sp. 916]
gi|393805269|gb|EJD66649.1| ribonuclease HII [Bacillus sp. 916]
Length = 255
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V G P + + LG DSK L+EKK ++ I +E A
Sbjct: 74 IAGVDEAGRGPLAGPVVAGAVILPAE-----CEILGLTDSKKLSEKKLEEYYSRITEEAA 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+ +VI
Sbjct: 129 AVG--VGIVHADVI 140
>gi|336400258|ref|ZP_08581043.1| ribonuclease HII [Fusobacterium sp. 21_1A]
gi|336162908|gb|EGN65852.1| ribonuclease HII [Fusobacterium sp. 21_1A]
Length = 210
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 48/186 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V A K+ +EEL + DSK LTEKKR+ + D I K N
Sbjct: 15 VIGVDEAGRGPLAGPVV-AAAVILKEYSEELDE---INDSKKLTEKKREKLYDIIMK-NF 69
Query: 102 WLGW---MVEIISPNVICNS---MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
++ VE I I N+ +RR L + D
Sbjct: 70 YVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKD---------------------- 107
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
KK + + + + + P+V K D+ V AASI AKV+R
Sbjct: 108 ---------KKEYIVLVDGNLKIKEYSGKQLPIV------KGDAKSLSVAAASIIAKVTR 152
Query: 216 DSALKS 221
D +K
Sbjct: 153 DRLMKD 158
>gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
Length = 202
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 44/180 (24%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
VLG+DEAGRGP+ GP++ PK + EL+ DSK L+EKKR+ + +I ++
Sbjct: 16 SVLGMDEAGRGPIAGPLMVAGVIFPKGYHNELID-----DSKKLSEKKREALFKTIIQDA 70
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ +V + + ++ R + ++ E+++ A +
Sbjct: 71 LYYQILV-VDEKTIDKKNIYRATQEAMMEIANKAQCDFV--------------------- 108
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
LS+ P D + + K D + AASI AKV+RD +K
Sbjct: 109 ------LSDAMP------LPDIDKPFQAI-----VKGDQKSLSIAAASILAKVTRDRWMK 151
>gi|237745358|ref|ZP_04575839.1| ribonuclease HII [Fusobacterium sp. 7_1]
gi|229432587|gb|EEO42799.1| ribonuclease HII [Fusobacterium sp. 7_1]
Length = 214
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 48/186 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V A K+ +EEL + DSK LTEKKR+ + D I K N
Sbjct: 19 VIGVDEAGRGPLAGPVV-AAAVILKEYSEELDE---INDSKKLTEKKREKLYDIIMK-NF 73
Query: 102 WLGW---MVEIISPNVICNS---MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
++ VE I I N+ +RR L + D
Sbjct: 74 YVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKD---------------------- 111
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
KK + + + + + P+V K D+ V AASI AKV+R
Sbjct: 112 ---------KKEYIVLVDGNLKIKEYSGKQLPIV------KGDAKSLSVAAASIIAKVTR 156
Query: 216 DSALKS 221
D +K
Sbjct: 157 DRFMKD 162
>gi|392420730|ref|YP_006457334.1| ribonuclease HII [Pseudomonas stutzeri CCUG 29243]
gi|390982918|gb|AFM32911.1| ribonuclease HII [Pseudomonas stutzeri CCUG 29243]
Length = 212
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC-KEN 100
V G+DE GRGP+ GP+V TA D + G DSK L+E +R+ + D IC K
Sbjct: 14 VAGVDEVGRGPLCGPVV--TAAVILDPARPI---KGLNDSKKLSEARREALFDEICEKAV 68
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
AW C + ++ + H + + R V V R +D
Sbjct: 69 AW-------------CIARAEVEEIDQLNILHATMLAMQRAVDGLSVTPRLALID----- 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
P+L + A PV+ + D P + AASI AKVSRD ++
Sbjct: 111 -------GNRCPQLNVPSA-------PVI------QGDGQVPAIAAASILAKVSRDREMQ 150
Query: 221 SWTF 224
+
Sbjct: 151 ALDL 154
>gi|339450880|ref|ZP_08654250.1| ribonuclease HII [Leuconostoc lactis KCTC 3528]
Length = 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 47/186 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ GP+V P D E L DSK L+EK RD + D I +
Sbjct: 73 VAGVDEVGRGPLAGPVVAAAVILPHDFAE-----LDVIDSKQLSEKMRDQLFDRIIAQAL 127
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+G IG++ + +N+ E
Sbjct: 128 SIG-------------------------------IGVVDAAVIDDINIYE------AARL 150
Query: 162 SYKKKLSEIFPE--LIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ + ++E+ PE ++ A + P + K D+ + AASI AKV+RD +
Sbjct: 151 AMTQAVAELAPEPDYLLIDAMTLQTDIPQLSLI---KGDARSNSIAAASIIAKVTRDRMM 207
Query: 220 KSWTFQ 225
+ Q
Sbjct: 208 TDYDRQ 213
>gi|421731724|ref|ZP_16170847.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407073937|gb|EKE46927.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 255
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V G P + + LG DSK L+EKK ++ I +E A
Sbjct: 74 IAGVDEAGRGPLAGPVVAGAVILPAE-----CEILGLTDSKKLSEKKLEEYYSRITEEAA 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+ +VI
Sbjct: 129 AVG--VGIVHADVI 140
>gi|154686022|ref|YP_001421183.1| ribonuclease HII [Bacillus amyloliquefaciens FZB42]
gi|385264732|ref|ZP_10042819.1| ribonuclease HII [Bacillus sp. 5B6]
gi|429505158|ref|YP_007186342.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|166225167|sp|A7Z4M6.1|RNH2_BACA2 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|154351873|gb|ABS73952.1| RnhB [Bacillus amyloliquefaciens FZB42]
gi|385149228|gb|EIF13165.1| ribonuclease HII [Bacillus sp. 5B6]
gi|429486748|gb|AFZ90672.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 255
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V G P + + LG DSK L+EKK ++ I +E A
Sbjct: 74 IAGVDEAGRGPLAGPVVAGAVILPAE-----CEILGLTDSKKLSEKKLEEYYSRITEEAA 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+ +VI
Sbjct: 129 AVG--VGIVHADVI 140
>gi|435853381|ref|YP_007314700.1| ribonuclease HII [Halobacteroides halobius DSM 5150]
gi|433669792|gb|AGB40607.1| ribonuclease HII [Halobacteroides halobius DSM 5150]
Length = 258
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ GIDEAGRGP+ GP+V P D LG DSK L EKKR+++ D I +
Sbjct: 75 LIAGIDEAGRGPLAGPVVAAAVILPTDKF-----ILGLDDSKKLNEKKREELFDIIYNQA 129
Query: 101 AWLGWMV 107
+G V
Sbjct: 130 IDIGVGV 136
>gi|436933464|ref|ZP_20589671.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|437039976|ref|ZP_20634421.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435042248|gb|ELM31968.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435087602|gb|ELM76089.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
Length = 198
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 90/205 (43%), Gaps = 54/205 (26%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V G+DE GRGP++G +V TA D + +G DSK L+EK+R + D I KE
Sbjct: 11 LVAGVDEVGRGPLVGAVV--TAAVILDPARPI---VGLNDSKKLSEKRRLSLYDEI-KEK 64
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
A L W S+ R + + ++E++ H + + R V AG+++ YV G
Sbjct: 65 A-LSW------------SLGRAEAHEIDELNILHATMLAMQRAV--AGLHIAPEYVLIDG 109
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
PEL PV A+ K DS + AASI AKV+RD+
Sbjct: 110 ----------NRCPEL------------PVTSMAVV-KGDSRVAEISAASILAKVTRDAE 146
Query: 219 LKSWTF---QEGIQIENNAWGSGYP 240
+ + Q G A GYP
Sbjct: 147 MAALDIVFPQYGF-----AQHKGYP 166
>gi|365846708|ref|ZP_09387210.1| ribonuclease HII [Yokenella regensburgei ATCC 43003]
gi|364573840|gb|EHM51327.1| ribonuclease HII [Yokenella regensburgei ATCC 43003]
Length = 198
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 54/205 (26%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V G+DE GRGP++G +V TA D + + +G DSK L+EK+R + D I KE
Sbjct: 11 LVAGVDEVGRGPLVGAVV--TAAVILDPAQPI---VGLNDSKKLSEKRRLALFDEI-KEK 64
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTVG 158
A L W S+ R + + ++E++ H + + R V AG+++
Sbjct: 65 A-LSW------------SLGRAEPHEIDELNILHATMLAMQRAV--AGLHI--------- 100
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
PPE + + PV A+ K DS + AASI AKV+RD+
Sbjct: 101 PPE-------------YVLIDGNRCPALPVPSMAVV-KGDSRVAEISAASILAKVTRDAE 146
Query: 219 LK--SWTF-QEGIQIENNAWGSGYP 240
+ TF Q G A GYP
Sbjct: 147 MAELDLTFPQYGF-----AQHKGYP 166
>gi|384209927|ref|YP_005595647.1| ribonuclease HII [Brachyspira intermedia PWS/A]
gi|343387577|gb|AEM23067.1| ribonuclease HII [Brachyspira intermedia PWS/A]
Length = 226
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 45/203 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKD--NNEELL-KNL--GCADSKALTEKKRDDILDSI 96
+ GIDE GRG + GP+ P + N EL+ +N+ G DSK ++ KKR+++ D I
Sbjct: 26 ICGIDEVGRGCLFGPVTVAAVIMPLELYNETELINENIVEGVDDSKKISAKKREELYDKI 85
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ +C S+ +++E++ A+ L G+N++
Sbjct: 86 IDK--------------ALCYSIYSVDSKTIDEINIYNAVKLAMVNAINGLNIK------ 125
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
P++++ A K D+ + +K DS +G ASI AKV RD
Sbjct: 126 ---------------PDILLIDAVKLDTD---IKQCSITKGDSKSYSIGCASIVAKVYRD 167
Query: 217 SALKSW--TFQEGIQIENNAWGS 237
+ ++Q+ +N +G+
Sbjct: 168 RMMNELPDSYQKYKVAKNKGYGT 190
>gi|407366158|ref|ZP_11112690.1| ribonuclease HII [Pseudomonas mandelii JR-1]
Length = 208
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 54/189 (28%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D N +L G DSK LTE +R+ + D IC++
Sbjct: 17 VAGVDEVGRGPLCGAVV--TAAVILDPNRPIL---GLNDSKKLTEARREKLYDEICEKA- 70
Query: 102 WLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
L W + EI N++ +ML Q+ A GL
Sbjct: 71 -LSWCIARAEVEEIDELNILHATMLAMQR---------AIEGL----------------- 103
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
+ KL+ I ++ +A++ + D P + AASI AKVSR
Sbjct: 104 ------HIQPKLAMIDGNRCPKLSMRAEAVV---------QGDGKVPAIAAASILAKVSR 148
Query: 216 DSALKSWTF 224
D + ++
Sbjct: 149 DREMAAFEL 157
>gi|157414103|ref|YP_001484969.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9215]
gi|166991069|sp|A8G702.1|RNH2_PROM2 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|157388678|gb|ABV51383.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9215]
Length = 205
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 41/179 (22%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDE GRG + GP V+ + N+ LLK LG DSK LT KKR
Sbjct: 19 VGIDEVGRGAIFGP-VFSAVVVLTEKNKFLLKQLGVKDSKKLTPKKR------------- 64
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL--IRKVIAAGVNVREVYVDTVGPP 160
+ + P ++ +S D IG +R++ G+ V + +
Sbjct: 65 -----KFLVPKILL-------------LSSDYGIGQSSVREIDNLGIRV-ATELSMIRAL 105
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ K+K SE+ + + + + +V DS + + +ASI AKVSRD+ +
Sbjct: 106 KKLKEKPSELIVDGPLLLRPWRGTQKNIVS------GDSKFISIASASIVAKVSRDNLM 158
>gi|293400516|ref|ZP_06644661.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373452162|ref|ZP_09544080.1| hypothetical protein HMPREF0984_01122 [Eubacterium sp. 3_1_31]
gi|291305542|gb|EFE46786.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371967594|gb|EHO85065.1| hypothetical protein HMPREF0984_01122 [Eubacterium sp. 3_1_31]
Length = 207
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGP+ GP+V P + E + DSK L+EKKR + I + +
Sbjct: 19 IIGIDEAGRGPIAGPLVVAAVSFPVGFSHESIY-----DSKKLSEKKRKALFQEIIQLAS 73
Query: 102 WLGWMVEIISPNVIC-NSMLRRQKYSLNEVS---HDA 134
+ ++I+SP +I ++ R + ++ E+S HDA
Sbjct: 74 --EYHIKIVSPQIIDEQNIYRATQLAMLELSNSFHDA 108
>gi|261866967|ref|YP_003254889.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
gi|415771058|ref|ZP_11485188.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416073291|ref|ZP_11584179.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|416108138|ref|ZP_11590934.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|444344290|ref|ZP_21152577.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444345489|ref|ZP_21153503.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|261412299|gb|ACX81670.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348004522|gb|EGY45024.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348007415|gb|EGY47730.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348656432|gb|EGY74047.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443542820|gb|ELT53115.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443544445|gb|ELT54431.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 199
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 101/244 (41%), Gaps = 67/244 (27%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYC-PKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
+ G+DE GRGP++G +V PK E G ADSK L+EKKR + + I K+
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKQPIE------GLADSKTLSEKKRLLLAEEI-KQ 64
Query: 100 NAWLGWMVEIISPNVICNSMLRRQKYSLNEVS--HDAAIGLIRKVIAAGVNVREVYVDTV 157
A L W ++ R + + ++E++ H + + + R + + V VD
Sbjct: 65 KA-LAW------------ALGRAEPHEIDELNILHASMLAMERAIKHLKIRPHFVLVDG- 110
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
+ I P L+I A K D P + AASI AKV+RD
Sbjct: 111 ----------NRIPPNLMIP-------------AQAVVKGDVLVPEISAASILAKVARD- 146
Query: 218 ALKSWTFQEGIQIENN------AWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
QE I ++ A GYP TK L + + FG R S++
Sbjct: 147 -------QEMIVLDKKYPHYAFAKHKGYP----TKLHLEKLRE--FGVLPEYRRSFAPVK 193
Query: 272 KILK 275
K+LK
Sbjct: 194 KLLK 197
>gi|383111040|ref|ZP_09931858.1| ribonuclease HII [Bacteroides sp. D2]
gi|313694611|gb|EFS31446.1| ribonuclease HII [Bacteroides sp. D2]
Length = 200
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 66/176 (37%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G DEAGRG + G + PKD ELL DSK LTEK+R + + I KE +
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFKNELLN-----DSKQLTEKQRYALREVIEKEA--I 66
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W V I+SP I + R + + + R V + + +D
Sbjct: 67 AWAVGIVSPEEIDEINILRASF----------LAMHRAVDQLSTRPQHLLID-------- 108
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ YP V K D Y + AASI AK RD +
Sbjct: 109 ----------------GNRFTKYPGVPHTTVVKGDGKYLSIAAASILAKTYRDDYM 148
>gi|398333730|ref|ZP_10518435.1| ribonuclease H [Leptospira alexanderi serovar Manhao 3 str. L 60]
Length = 223
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 40/193 (20%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN---LGCADSKALTEKKRDDIL 93
+S PC GIDEAGRGP GP+ ++ ++L+ G DSK L+E+KR+ +
Sbjct: 19 ESIPC--GIDEAGRGPYAGPLSVALVSFSQNTLNQILEGKILKGLTDSKKLSERKREALY 76
Query: 94 DSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
I K A + + +SPN I + R A + IRK +
Sbjct: 77 PEILK-TAQISYRT-FLSPNYIDREGINR-----------AVLEGIRKCAKMAI------ 117
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVG-----AAIASKADSTYPVVGAAS 208
+ +S P ++ + + YP ++ +K D + AAS
Sbjct: 118 -----------RAISSTLPLQLLIDGNYNFNRYPEWNYFKNRSSFYTKGDLRIVSIAAAS 166
Query: 209 ICAKVSRDSALKS 221
I AKV+RD + S
Sbjct: 167 ILAKVARDRYMTS 179
>gi|296313291|ref|ZP_06863232.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768]
gi|296840213|gb|EFH24151.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768]
Length = 194
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 41/176 (23%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++G + P E G DSK L+EKKRD + + I ++ +
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP-----ETFDLPGLTDSKKLSEKKRDALAEMI--KSQAV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
W + P I SLN + H + + R V V ++++D PE
Sbjct: 60 AWHIAAAGPEEIA---------SLN-ILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHL 109
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ A K DS + AAS+ AK +RD+ +
Sbjct: 110 N------------------------IPAEAVVKGDSKIIEISAASVLAKTARDAEM 141
>gi|375362250|ref|YP_005130289.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|451347023|ref|YP_007445654.1| ribonuclease HII [Bacillus amyloliquefaciens IT-45]
gi|371568244|emb|CCF05094.1| ribonuclease HII [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|449850781|gb|AGF27773.1| ribonuclease HII [Bacillus amyloliquefaciens IT-45]
Length = 255
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAGRGP+ GP+V G P + + LG DSK L+EKK ++ I +E A
Sbjct: 74 IAGVDEAGRGPLAGPVVAGAVILPAE-----CEILGLTDSKKLSEKKLEEYYSRITEEAA 128
Query: 102 WLGWMVEIISPNVI 115
+G V I+ +VI
Sbjct: 129 AVG--VGIVHADVI 140
>gi|333901601|ref|YP_004475474.1| ribonuclease H [Pseudomonas fulva 12-X]
gi|333116866|gb|AEF23380.1| Ribonuclease H [Pseudomonas fulva 12-X]
Length = 202
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 96/235 (40%), Gaps = 52/235 (22%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DE GRGP+ G +V TA D +L G DSK LTE +R+ + D I +E A
Sbjct: 14 VAGVDEVGRGPLCGAVV--TAAVILDPARPIL---GLNDSKKLTEARREKLFDEI-REKA 67
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
L W C + ++ + H + + R + V + +D
Sbjct: 68 -LAW----------CIARAEVEEIDRLNILHATMLAMQRAIEGLSVQPKLALID------ 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
P+L + A PVVG D+ P + AASI AKVSRD ++
Sbjct: 111 ------GNRCPKLSVPSA-------PVVGG------DAQVPAIAAASILAKVSRDREMRE 151
Query: 222 W-TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
G I A GYP PV + L+ G + R S++ ++L+
Sbjct: 152 LDALYPGYGI---ALHKGYP-TPVHLEALTR-----LGPTPIHRRSFAPVRRLLE 197
>gi|114048186|ref|YP_738736.1| ribonuclease HII [Shewanella sp. MR-7]
gi|123131228|sp|Q0HT76.1|RNH2_SHESR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|113889628|gb|ABI43679.1| RNase HII [Shewanella sp. MR-7]
Length = 209
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
S V G+DE GRGP++G +V TA D N + G DSK LTEK+R+ + D IC
Sbjct: 16 STGLVAGVDEVGRGPLVGDVV--TAAVILDPNRPIA---GLNDSKKLTEKRREALFDEIC 70
Query: 98 KENAWLGWMVEIISP------NVICNSMLRRQK 124
++ L + V SP N++ +ML Q+
Sbjct: 71 EK--ALSFHVGRASPAEIDELNILHATMLAMQR 101
>gi|255025707|ref|ZP_05297693.1| ribonuclease HII [Listeria monocytogenes FSL J2-003]
gi|255028970|ref|ZP_05300921.1| ribonuclease HII [Listeria monocytogenes LO28]
Length = 233
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + + I KE
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALFEKIKKEAI 127
Query: 102 WLGWMVEIISPNVI 115
+G V II +VI
Sbjct: 128 AIG--VGIIEHDVI 139
>gi|423138225|ref|ZP_17125868.1| ribonuclease HII [Fusobacterium nucleatum subsp. animalis F0419]
gi|371958263|gb|EHO75982.1| ribonuclease HII [Fusobacterium nucleatum subsp. animalis F0419]
Length = 210
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 78/186 (41%), Gaps = 48/186 (25%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+G+DEAGRGP+ GP+V A K+ EEL + DSK LTEKKR+ + D I K N
Sbjct: 15 VIGVDEAGRGPLAGPVV-AAAVILKEYTEELDE---INDSKKLTEKKREKLYDIIMK-NF 69
Query: 102 WLGW---MVEIISPNVICNS---MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
++ VE I I N+ +RR L + D
Sbjct: 70 YVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKD---------------------- 107
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
KK + + + + + P+V K D+ V AASI AKV+R
Sbjct: 108 ---------KKEYIVLVDGNLKIKEYSGKQLPIV------KGDAKSLSVAAASIIAKVTR 152
Query: 216 DSALKS 221
D +K
Sbjct: 153 DRLMKD 158
>gi|303327966|ref|ZP_07358405.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3]
gi|302861792|gb|EFL84727.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3]
Length = 230
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 35/203 (17%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
++ + L IP +S P V GIDEAGRG + GP+V P + +
Sbjct: 1 MKGHAAQAGLFGPEDIPFGRRSGP-VAGIDEAGRGCLAGPVVAAAVILP-----AVYELP 54
Query: 77 GCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDA-- 134
G DSKAL+ K R DIL +E A L W + ++ P I ++ ++ + + +A
Sbjct: 55 GLTDSKALSAKAR-DILAPRIRECA-LAWGLGVVWPRRI-------ERINILQATFEAMS 105
Query: 135 -AIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
A+G++R + + +D +++ P+ ++T+ + T P
Sbjct: 106 RAVGVLR------LTPGRLLIDG-----------NKVLPDAVLTLFWRTGHTAPPPLQQA 148
Query: 194 ASKADSTYPVVGAASICAKVSRD 216
D + V+ AASI AK RD
Sbjct: 149 VVGGDKSEDVISAASILAKTFRD 171
>gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 198
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 54/182 (29%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
C+ G+DE GRGP++G +V TA D + +G ADSK L+EK+R + D I KE
Sbjct: 12 CIAGVDEVGRGPLVGAVV--TAAVILDPTRPI---VGLADSKQLSEKRRLSLYDEI-KEK 65
Query: 101 AWLGWMV------EIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYV 154
A L W + EI N++ +ML Q+ A GL
Sbjct: 66 A-LAWSLGRAEPEEIDQLNILHATMLAMQR---------AVAGL---------------- 99
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
I P+ ++ ++ + P+ A+ K DS + AASI AKV+
Sbjct: 100 --------------AIVPDFVLIDGNRCPA-LPMSAQAVV-KGDSRVAEISAASIMAKVT 143
Query: 215 RD 216
RD
Sbjct: 144 RD 145
>gi|410636572|ref|ZP_11347165.1| ribonuclease HII [Glaciecola lipolytica E3]
gi|410143854|dbj|GAC14370.1| ribonuclease HII [Glaciecola lipolytica E3]
Length = 199
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 79/186 (42%), Gaps = 44/186 (23%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
+ G+DE GRGP++G +V TA D ++ G DSK L+EKKRD + D I K+N
Sbjct: 6 LIAGVDEVGRGPLVGDVV--TAAVILDPAHPIV---GLTDSKKLSEKKRDLLFDEI-KKN 59
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
A L W + SP I LN + H + + R V + V VD P
Sbjct: 60 A-LSWSIGRASPKEIDE---------LN-ILHATMLAMKRAVEGLTIQPDLVQVDGNRCP 108
Query: 161 E-SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
+ SYK E I+ K D + + AASI AKV+RD +
Sbjct: 109 DWSYKS-------EAIV-------------------KGDGSIAEISAASIIAKVTRDREM 142
Query: 220 KSWTFQ 225
Q
Sbjct: 143 ADLHLQ 148
>gi|290894532|ref|ZP_06557482.1| rnhB protein [Listeria monocytogenes FSL J2-071]
gi|404407707|ref|YP_006690422.1| ribonuclease HII [Listeria monocytogenes SLCC2376]
gi|290555913|gb|EFD89477.1| rnhB protein [Listeria monocytogenes FSL J2-071]
gi|404241856|emb|CBY63256.1| ribonuclease HII [Listeria monocytogenes SLCC2376]
Length = 261
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DE GRGP+ GP+V P D +G DSK L+E KRD + ++I E
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPAD-----FSVVGINDSKQLSEAKRDALYETIQTEAI 127
Query: 102 WLGWMVEIISPNVI 115
+G V II NVI
Sbjct: 128 AVG--VGIIEHNVI 139
>gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1]
gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1]
gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10]
Length = 223
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGP+ GP+V P D E L N DSK LTEK+R+++ I ++
Sbjct: 32 ICGIDEAGRGPLAGPVVAAACILPTD-CEILYLN----DSKKLTEKRREELFVEIQEKAV 86
Query: 102 WLGWMVEIISPNVI 115
G V I+SP VI
Sbjct: 87 SFG--VGIVSPAVI 98
>gi|375106227|ref|ZP_09752488.1| ribonuclease HII [Burkholderiales bacterium JOSHI_001]
gi|374666958|gb|EHR71743.1| ribonuclease HII [Burkholderiales bacterium JOSHI_001]
Length = 227
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 80/202 (39%), Gaps = 50/202 (24%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAGRGP+ GP+V D + + G ADSKALT +KR+ + D I + A
Sbjct: 43 VAGVDEAGRGPLAGPVVAAAVIL--DEQQPI---AGLADSKALTARKREKLFDEI-RAKA 96
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ E S+ E+ +N+ + + +
Sbjct: 97 LACCIAE----------------SSVEEIDR--------------LNILQATLLAM---- 122
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS---A 218
+ L P +++ V P+ AI K D+T + AASI AKV RD A
Sbjct: 123 -RRAVLGLRLPPVMVLVDGNRLPVLPMAAQAIV-KGDATVQAISAASILAKVHRDRLCLA 180
Query: 219 LKSWTFQEGIQIENNAWGSGYP 240
L Q G + GYP
Sbjct: 181 LHEAHPQYGFAVHK-----GYP 197
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,389,167,319
Number of Sequences: 23463169
Number of extensions: 273025107
Number of successful extensions: 787477
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 3282
Number of HSP's that attempted gapping in prelim test: 780317
Number of HSP's gapped (non-prelim): 6104
length of query: 401
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 256
effective length of database: 8,957,035,862
effective search space: 2293001180672
effective search space used: 2293001180672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)