BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12553
(401 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VPP5|RNH2A_DROME Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690
PE=2 SV=1
Length = 347
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)
Query: 17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
I +NSRN + S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L++L
Sbjct: 47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105
Query: 77 GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
GCADSK LTE KRD I + I KE A +GW VEIISPN I SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165
Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
+A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP ITVA KADSTY
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218
Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270
Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
D VFGFP+LVRFSWSTA L +KA +E DE D E+ + K + FFK
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326
Query: 314 ESPVVEERHAFFKE 327
++ E FFK+
Sbjct: 327 --EIIREECRFFKQ 338
>sp|Q2TBT5|RNH2A_BOVIN Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1
Length = 299
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 196/308 (63%), Gaps = 25/308 (8%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP E+L + L A
Sbjct: 8 RDNTGRCRLSSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L+E +RD + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GL+
Sbjct: 67 DSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLV 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+++L + FP + +TV +KA D+
Sbjct: 127 QFALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKA---------------DA 171
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
YPVV AASICAKV+RD A+K+W F E +Q + +GSGYP DP TK +L +++DPVFGF
Sbjct: 172 LYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGF 231
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVE 319
PQ VRFSW TA IL+ +A V+ ++ E G+ K I+++F + P
Sbjct: 232 PQFVRFSWRTAQSILESEAEDVKW----EDSETGDPKGPGKIKSYFSESPQTCLRLP--- 284
Query: 320 ERHAFFKE 327
H +F+E
Sbjct: 285 --HRYFQE 290
>sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
Length = 299
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 184/284 (64%), Gaps = 17/284 (5%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C+ +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK L E +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 125
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV
Sbjct: 126 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 174
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASICAKV+RD A+K W F E +Q + +GSGYP DP TK +L E+++PVFGF
Sbjct: 175 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 230
Query: 260 PQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRN 303
PQ VRFSW TA IL+++A V ++ E +EG K T N
Sbjct: 231 PQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLN 274
>sp|Q9CWY8|RNH2A_MOUSE Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2
Length = 301
Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 196/307 (63%), Gaps = 23/307 (7%)
Query: 21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L AD
Sbjct: 9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67
Query: 81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
SK LTE +R+ + + ++ ++GW ++++SPN+I SML R KY+LN +SHD A GLI+
Sbjct: 68 SKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127
Query: 141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
+ VNV +V+VDTVG PE+Y+ +L + FP + +TV +KA DS
Sbjct: 128 YALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKA---------------DSL 172
Query: 201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
+PVV AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct: 173 FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232
Query: 261 QLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEE 320
Q VRFSWSTA IL+++A E +D E E + ++ I ++F + ++ +
Sbjct: 233 QFVRFSWSTAQAILEKEA---EDVIWEDSEAEEDPERPGKITSYFS----QGPQTCRPQA 285
Query: 321 RHAFFKE 327
H +F+E
Sbjct: 286 PHRYFQE 292
>sp|Q5U209|RNH2A_RAT Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2
SV=1
Length = 301
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/280 (47%), Positives = 181/280 (64%), Gaps = 17/280 (6%)
Query: 20 NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
DN+ +SS +P C +PCVLG+DEAGRGPVLGPMVY YCP +L + L A
Sbjct: 8 RDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVA 66
Query: 80 DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
DSK LTE +R+ + + ++ ++GW ++I+SPN+I SML R KY+LN +SHD A GLI
Sbjct: 67 DSKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLI 126
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
+ + V V +V+VDTVG PE+Y+ +L + FP + +TV +KADS +PV
Sbjct: 127 QHAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPV----------- 175
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
V AASI AKV+RD A+K+W F E +Q ++ +GSGYP DP TK +L +++DPVFGF
Sbjct: 176 ----VSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGF 231
Query: 260 PQLVRFSWSTASKIL-KEKAVLVEGDEIDDEEEEGENKKT 298
PQ VRFSWSTA IL KE + D +E+ EG + T
Sbjct: 232 PQFVRFSWSTAQAILEKEAESVTWEDSAAEEDPEGPGRIT 271
>sp|Q9U6P6|RNH2A_CAEEL Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2
SV=1
Length = 297
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 193/292 (66%), Gaps = 28/292 (9%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
PCVLGIDEAGRGPVLGPMVY A P D N EL KNLG DSKAL E KR++I + + ++
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVEL-KNLGVDDSKALNEAKREEIFNKMNED 79
Query: 100 ---NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ + + +SP +I SML+RQKYSLNEVSH+AAI LIR +A VNV E+ VDT
Sbjct: 80 EDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDT 139
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
VGP +Y+ KL ++FP + I V KA DS +P+V AASI AKV+RD
Sbjct: 140 VGPKATYQAKLEKLFPGISICVTEKA---------------DSLFPIVSAASIAAKVTRD 184
Query: 217 SALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
S L++W F+E I++ + +GSGYPGDP TKKFL +++PVFGF LVR SW TAS I++
Sbjct: 185 SRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVE 244
Query: 276 EKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKE 327
++ V +D+EEEG+++ R + ++ PK E+ VV +R+ +FKE
Sbjct: 245 KRCV---PGSWEDDEEEGKSQSKR-MTSWMVPKN----ETEVVPKRNVYFKE 288
>sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2
SV=2
Length = 296
Score = 231 bits (588), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
SQPC++GIDEAGRGPVLGPMVYG YCP + + L +L ADSK L E+KR+++ +S+
Sbjct: 12 SQPCLMGIDEAGRGPVLGPMVYGCMYCPI-SYQSSLASLHFADSKTLKEEKREELYESL- 69
Query: 98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
K + LGW V++I P + ML + K +LNE+SH++A+GLI++V+ GV + E Y+DTV
Sbjct: 70 KLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTV 129
Query: 158 GPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
G P+ Y+ KLSE FP + V+ KADS +P+V ASI AKV+RD
Sbjct: 130 GDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSG---------------ASIVAKVTRDR 174
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK-E 276
ALK W +E + N +GSGYPGDP TK +L ++ VFGFP LVRFSW T + LK E
Sbjct: 175 ALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGE 234
Query: 277 KAVLVEGDEIDDEEEEGENKKTRSIRNF-FKP--KADENVES 315
V E DE ++ +K+ + +F FK K E +ES
Sbjct: 235 VEVAWEADENEESGNGSSSKRQAKLSSFGFKTCEKRSEEIES 276
>sp|Q54D13|RNH2A_DICDI Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A
PE=3 SV=1
Length = 289
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 173/286 (60%), Gaps = 28/286 (9%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
KS+P V+GIDEAGRGPV+GPMVYG Y P + LK++ DSK LTE++RD + D +
Sbjct: 17 KSEPFVMGIDEAGRGPVMGPMVYGCCYAPI-SKSTTLKSMKFNDSKKLTEQQRDQLFDKM 75
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
+ N L + ++I+ ++ ML ++ SLN +SH++AIGLIR V+ GVNV+E+Y+DT
Sbjct: 76 GESNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDT 135
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
VGPP+ Y+ L ++FPE+ + SK KADS YP+V AASI AKV RD
Sbjct: 136 VGPPDKYQLMLKKLFPEIGKIIVSK--------------KADSLYPIVSAASIAAKVVRD 181
Query: 217 SALKSWTF------QEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
+ + F + Q+ + +GSGYP DP++KK+L +N D VFG+P +RFSW T
Sbjct: 182 FEITNKNFDYLNIYDQDEQLSTD-FGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTT 240
Query: 271 SKILKEKAV----LVEGDEIDDEEEEGENKKTRSIRNFFKPKADEN 312
++ ++E D++ +E +N K R + FFK EN
Sbjct: 241 ETAMRGACFGVDWVLENDKLKQHFQENQNDKKRFM--FFKENNIEN 284
>sp|Q10236|RNH2A_SCHPO Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnh201 PE=3 SV=1
Length = 326
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 165/284 (58%), Gaps = 28/284 (9%)
Query: 15 SCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLK 74
S +SN N S+ + KSQP LG+DEAGRGPVLGPMVY AYCP D + L
Sbjct: 38 SVNKSNPAKSNYYHSTVTDDISKSQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD---LT 94
Query: 75 NLGCADSKALTEKKRDDILDSICKENAWLG----WMVEIISPNVICNSMLR-RQKYSLNE 129
N G ADSK L KR+++L IC ++ LG W IS + MLR R KY+LN
Sbjct: 95 NYGFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNL 154
Query: 130 VSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVV 189
+HD I LI+KV +G+NV E+YVDTVGPP SY++KL FP+ +TV
Sbjct: 155 QAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFPQAKVTV----------- 203
Query: 190 GAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFL 249
KADS +P+V ASICAKV+RD L+ +E I+ EN WGSGY D T ++L
Sbjct: 204 ----TKKADSLFPIVSLASICAKVTRDIQLE--CARESIRTEN--WGSGYSSDARTTEWL 255
Query: 250 SENIDPVFGFP-QLVRFSWSTASKILKEKAVLVEGDEIDDEEEE 292
N+D +FG+ +VR+SW TA +L+ + EID E++
Sbjct: 256 KVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIEIDWHEDD 299
>sp|Q9P5X8|RNH2A_NEUCR Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rnh-201 PE=3 SV=1
Length = 317
Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 157/281 (55%), Gaps = 36/281 (12%)
Query: 40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN-LGCADSKALTEKKRDDILDSICK 98
PC LG+DEAGRGPVLGPMVY Y P ++ LLK DSK LT R ++ +C
Sbjct: 43 PCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCT 102
Query: 99 ENAWL----GWMVEIISPNVICNSMLRRQK---YSLNEVSHDAAIGLIRKVIAAGVNVRE 151
++ L G+ +SP I + ML+ K Y+LN+ + DA I LI+ + GVNV +
Sbjct: 103 KDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNVTD 162
Query: 152 VYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICA 211
+++DT+G P +Y+KKL +FP ITVA KA DS YPVV AAS+ A
Sbjct: 163 IFIDTIGQPAAYQKKLERVFPTAKITVAKKA---------------DSLYPVVSAASVVA 207
Query: 212 KVSRDSALKS-WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
KV+RD AL+ W + AWGSGYP D +L +N+ PVFG+ RFSW TA
Sbjct: 208 KVTRDIALEVLWADR------TMAWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA 261
Query: 271 SKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADE 311
+L+ K G ++D E E ++T+ + +FF K D+
Sbjct: 262 KDMLETKG----GVKVD--WPEEEEEETQKLTDFFMAKRDQ 296
>sp|P53942|RNH2A_YEAST Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RNH201 PE=1 SV=1
Length = 307
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 144/294 (48%), Gaps = 36/294 (12%)
Query: 30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAY-CPKDNNEELLKNLGCADSKALT 85
S +P + Q P ++GIDEAGRGPVLGPMVY AY K +E ++ N DSK LT
Sbjct: 20 SPVPSALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLT 79
Query: 86 EKKRDDILDSICKEN---AWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
+ R + I ++N +G+ I+P I M + + Y+LNE +HD + LI
Sbjct: 80 DPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
VI V + VYVDTVGPP SY+KKL + FP + TVA KADS Y +V A +
Sbjct: 140 DGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVT 199
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
+V + + RD + GSGYP DP T +L N + G+
Sbjct: 200 RDILVES------LKRDP--------------DEILGSGYPSDPKTVAWLKRNQTSLMGW 239
Query: 260 P-QLVRFSWSTASKILKEKA-----VLVEGDEIDDEEEEGENKKTRSIRNFFKP 307
P +VRFSW T +L + + + E +D + + K ++ KP
Sbjct: 240 PANMVRFSWQTCQTLLDDASKNSIPIKWEEQYMDSRKNAAQKTKQLQLQMVAKP 293
>sp|Q12YN9|RNH2_METBU Ribonuclease HII OS=Methanococcoides burtonii (strain DSM 6242)
GN=rnhB PE=3 SV=1
Length = 213
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 119/239 (49%), Gaps = 33/239 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAG+GPV+GPM G +D + L KNLG ADSK L+ K+R + I K
Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNAL-KNLGVADSKKLSPKRRVHLAAQIKKYAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR-----KVIAAGVNVREVYVDT 156
GW V +SPN I R+ S+N++ A +I K+ A +V+E
Sbjct: 62 --GWFVYEVSPNQIDE---LRKLMSMNDIMVLAFGSVIEELPSDKIYADAADVKE----- 111
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
E + K+L + + E D + P V + AD +PVV AASI AKV RD
Sbjct: 112 ----ERFGKRLFDNYME------KHPDVSPPEVISK--HGADDLFPVVSAASILAKVRRD 159
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
++ G+ I GSGYP DP TKKFL FP +VR SW TA K ++
Sbjct: 160 ELIEKIKVDMGVDI-----GSGYPSDPKTKKFLENWYRENSSFPDIVRHSWKTAQKFIQ 213
>sp|A9A9T9|RNH2_METM6 Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnhB PE=3 SV=1
Length = 239
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 40/246 (16%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL--LKNLGCADSKALTEKKRDDI--- 92
S ++G+DEAGRGPV+GPMV + K N ++L L++LG DSK L++KKR+++
Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASV---KINEKDLYKLQDLGLKDSKQLSKKKREELYVK 72
Query: 93 LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+ IC +I+P I M + +LN++ A L I N+ +
Sbjct: 73 ISEICNVKKI------VIAPEKIDEQM---EITNLNKIELSAFSKLANHFIKENENIS-I 122
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
Y+D E + S F KA V KAD Y +V AASI AK
Sbjct: 123 YIDACSSNE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAK 170
Query: 213 VSRDSALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTA 270
V+RD+ ++ + TF E GSGYP DP TKKFL + + G P++ R SW+T+
Sbjct: 171 VTRDNVIEEYKKTFGE--------IGSGYPSDPKTKKFLKKYVHENKGLPKIARKSWATS 222
Query: 271 SKILKE 276
+LKE
Sbjct: 223 KNLLKE 228
>sp|A6VGW0|RNH2_METM7 Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnhB PE=3 SV=1
Length = 239
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 115/238 (48%), Gaps = 32/238 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSICK 98
++G+DEAGRGPV+GPMV + +N+ L +LG DSK LT+KKR+++ + IC
Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKI-NENDLPKLHDLGLKDSKQLTKKKREELYIKISEICD 78
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+I P I M + +LN++ A L I N+ +Y+D
Sbjct: 79 VKKI------VIDPEKIDEQM---EIINLNKIELGAFSKLANHFIKENENIS-IYIDACS 128
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
E + S F KA V KAD Y +V AASI AKV+RD+
Sbjct: 129 SNE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNV 176
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
++ + G GSGYP DP TKKFL + G P++ R SW+T+ +LKE
Sbjct: 177 IEEYKEIFG------EIGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKE 228
>sp|A4FWE5|RNH2_METM5 Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnhB PE=3 SV=1
Length = 239
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 120/242 (49%), Gaps = 40/242 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEEL--LKNLGCADSKALTEKKRDDI---LDSI 96
++G+DEAGRGPV+GPMV + K N ++L L +LG DSK L++KKR+++ + I
Sbjct: 20 IVGLDEAGRGPVIGPMVIASV---KINEKDLPRLDDLGLRDSKQLSKKKREELYTKISEI 76
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
C +I+P I M + +LN++ A L I N+ +Y+D
Sbjct: 77 CDVKKV------VINPEKIDEQM---EIINLNKIELGAFSKLANHFIKENENIS-IYIDA 126
Query: 157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
E + S F KA V KAD Y +V AASI AKV+RD
Sbjct: 127 CSSNE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRD 174
Query: 217 SALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ ++ + TF E GSGYP DP TKKFL + G P++ R SW+T+ +L
Sbjct: 175 NVIEEYKKTFGE--------IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLL 226
Query: 275 KE 276
KE
Sbjct: 227 KE 228
>sp|A6UQ18|RNH2_METVS Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089
/ DSM 1224) GN=rnhB PE=3 SV=1
Length = 244
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 125/257 (48%), Gaps = 36/257 (14%)
Query: 25 NLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKAL 84
NL S P ++ +LG+DEAGRGPVLGPMV + + +++ +L DSK L
Sbjct: 8 NLNESINNPSKILNEKIILGLDEAGRGPVLGPMVISVVKVTEKDLDKI-NSLDLKDSKQL 66
Query: 85 TEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA 144
T+K+R++ + I N +++P I M + +LN++ A L +
Sbjct: 67 TKKRREEYYNII---NECFEVQKIVLAPEKIDEYM---KTSNLNKIELSAFSKLSNHFLK 120
Query: 145 AGVNVREVYVDTVGPPES-----YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
NV+ +++D E +K KL E+I KAD
Sbjct: 121 EYENVK-IFIDACSSSEQSFLNQFKAKLINKKVEIIA-----------------EHKADE 162
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
Y +V AASI AKV+RD+ ++S+ + G GSGYPGDP TK+FL +
Sbjct: 163 KYKIVSAASIIAKVTRDNIIESYKEEFG------DIGSGYPGDPKTKEFLKRFVKEHKKL 216
Query: 260 PQLVRFSWSTASKILKE 276
P++ R SW+T+ K+LKE
Sbjct: 217 PKIARGSWATSKKLLKE 233
>sp|O59351|RNH2_PYRHO Ribonuclease HII OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnhB PE=1 SV=1
Length = 220
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAGRGPV+GP+V G A + N E L+++G DSK LT +R+ + + +
Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVI-DEKNIERLRDIGVKDSKQLTPGQREKLFSKLI--DI 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT--VGP 159
+ V +++P I + +S+NE+ + + + + + +++YVD+ V P
Sbjct: 60 LDDYYVLLVTPKEIDE-----RHHSMNELEAEKFVVALNSL---RIKPQKIYVDSADVDP 111
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
F LI KA Y A KAD+ Y +V AASI AKV+RD +
Sbjct: 112 KR---------FASLI-----KAGLKYEATVIA-EHKADAKYEIVSAASIIAKVTRDREI 156
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ + +GSGYP DP TK++L E FP +VR +W TA KI
Sbjct: 157 ------EKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKI 204
>sp|Q9V1A9|RNH2_PYRAB Ribonuclease HII OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnhB
PE=3 SV=1
Length = 224
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G DEAGRGPV+GP+V A +D L K LG DSK LT +R+ + D I K
Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTK-LGVKDSKQLTPAQREKLFDEIVK--V 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ V I+SP I +K S+NE+ + ++ + + V +Y+D+
Sbjct: 60 LDDYSVVIVSPQDIDG-----RKGSMNELEVE---NFVKALNSLKVKPEVIYIDSADVK- 110
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+E F E + S+ VV KAD+ Y +V AASI AKV RD +
Sbjct: 111 ------AERFAE---NIRSRLAYEAKVVAE---HKADAKYEIVSAASILAKVIRDREI-- 156
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E +GSGYP DP TKK+L E FP +VR +W TA KI
Sbjct: 157 ----EKLKAEYGDFGSGYPSDPRTKKWLEEWYSKHGNFPPIVRRTWDTAKKI 204
>sp|Q6LXH7|RNH2_METMP Ribonuclease HII OS=Methanococcus maripaludis (strain S2 / LL)
GN=rnhB PE=3 SV=1
Length = 242
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 118/245 (48%), Gaps = 40/245 (16%)
Query: 39 QPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDD---ILDS 95
+ ++G+DEAGRGPVLGPMV + + N +L +L DSK L++KKR++ I++
Sbjct: 20 EKIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKL-NDLELKDSKQLSKKKREELYIIINE 78
Query: 96 ICKENAWLGWMVE--IISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVY 153
+C VE +I P I M + +LN++ A L I N+ +Y
Sbjct: 79 MCD--------VEKIVIDPETIDKQM---EIINLNKIELSAFSKLSNHFIRENDNIS-IY 126
Query: 154 VDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
+D E + S F KA V KAD Y +V AASI AKV
Sbjct: 127 IDACSSSE---QSFSNQF---------KAKLINKNVEIIAEHKADENYKIVSAASIIAKV 174
Query: 214 SRDSALKSW--TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTAS 271
+RD ++ + TF E GSGYP DP TKKFL + P++ R SW+T+
Sbjct: 175 TRDRVIEEYKETFGE--------IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSK 226
Query: 272 KILKE 276
+LKE
Sbjct: 227 NLLKE 231
>sp|Q97CG6|RNH2_THEVO Ribonuclease HII OS=Thermoplasma volcanium (strain ATCC 51530 / DSM
4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rnhB PE=3 SV=2
Length = 212
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 107/230 (46%), Gaps = 37/230 (16%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV C EE L+ +G DSK L+ K+R+ + D I K A+
Sbjct: 8 GIDEAGRGPVIGPMVISIVCC----KEEYLREIGVKDSKMLSRKRREYLFDKITKNCAY- 62
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
++V +SP + M SLN++ + + L+ K A G+ VY+D E
Sbjct: 63 SYVV--VSPETLNKDMASE---SLNKIEENYILELLSK--AEGI----VYIDCFDVIEER 111
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+K + S VV KADS YP V AASI +KV RD +
Sbjct: 112 AEKY------------IREKSGKEVV---CKHKADSIYPAVSAASIVSKVIRDREIDKIA 156
Query: 224 FQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP DP T FL + + + R W T KI
Sbjct: 157 EKYGF------FGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWETYKKI 200
>sp|P57673|RNH2_THEAC Ribonuclease HII OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rnhB
PE=3 SV=1
Length = 212
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 110/235 (46%), Gaps = 45/235 (19%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GPMV C + LK + DSKALT K+R ++ + I
Sbjct: 9 GIDEAGRGPVIGPMVISLVCC----DLSFLKEIRVKDSKALTRKRRSELFEKIM---GRC 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
I+ P + N M+ + SLN++ D + L+R Y D + + Y
Sbjct: 62 SVRYRILHPKDL-NRMMAAE--SLNKIEEDEIVDLLR------------YADDLVYIDCY 106
Query: 164 KKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWT 223
+ E E+I + + KAD+ +P V AASI +KV RD+ +
Sbjct: 107 -DVIEERAQEIIQMRSGRQ--------VVCKHKADAIFPAVSAASIVSKVIRDAEIDRLH 157
Query: 224 FQEGIQIENNAWGSGYPGDPVT----KKFLSENIDPVFGFPQLVRFSWSTASKIL 274
+ G +GSGYP DP T KK+L EN DP ++VR WST ++L
Sbjct: 158 DRFG------DFGSGYPSDPRTIDFLKKYLKENQDP----SEIVRIHWSTVQRLL 202
>sp|A1RYM0|RNH2_THEPD Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3
SV=1
Length = 213
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 27/234 (11%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V GIDEAGRGP+LGPMV CP++ LL+N+G DSKAL+ ++R +L S +
Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKV-PLLRNMGVRDSKALSPRRR--LLLSRAIPSV 60
Query: 102 WLGWMVEIISPNVICNSMLRRQKY-SLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP- 159
V ++ P I + +R + Y +LN + LI +V++ G + VY+D+ P
Sbjct: 61 GCSVKVRVVEPQEI-DCAVRGECYENLNHLEAAVFAQLINEVLSEG-ELEVVYMDSPDPV 118
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
P +++++ + + VA AD Y +VGAASI AK +RD +
Sbjct: 119 PSRFEERVRALLKGQVRIVAENG--------------ADEKYTIVGAASIVAKETRDEII 164
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ G +GSGYP DP T +F E + P + R W+T ++
Sbjct: 165 NALKKTYG------DFGSGYPSDPRTLRFAEEWVRKHGEPPPIARKEWATWKRL 212
>sp|O27102|RNH2_METTH Ribonuclease HII OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=rnhB PE=3 SV=1
Length = 206
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 44/238 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRGPV+GP+V P + +L+ +G DSK LT ++R + I +
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIP-ERKFSILRKMGVKDSKKLTPERRRFLARKIRR--I 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ V+I + ++ +R + ++LNE+ A I+++I R V +D+V P
Sbjct: 60 ARVFTVKISASDI---DRMRERGFNLNEIEKIA----IKRIIPEAQPDR-VIIDSVDVKP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E ++++ F E+ +T AD+ Y YP V AASI AKV RD +
Sbjct: 112 ERLEEEIRSHFGEIEVTAEHGADTRY--------------YP-VAAASIIAKVERDLEI- 155
Query: 221 SWTFQEGIQIENNAW---GSGYPGDPVTKKFLSENIDPVFGF---PQLVRFSWSTASK 272
E IQ +N GSGYP DP T++FL F + P VR SW+T K
Sbjct: 156 -----ESIQKKNRKLGDIGSGYPSDPRTREFLES-----FTYDELPDFVRRSWATVQK 203
>sp|Q8TPF4|RNH2_METAC Ribonuclease HII OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnhB PE=3 SV=1
Length = 223
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 118/241 (48%), Gaps = 33/241 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G +++ +LK LG ADSK LT KKR+ + I K
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKI-EESRAHILKVLGVADSKKLTPKKREQLASQIKKHAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
G+ + I+P I R+ S+NE+ VI + ++ D V
Sbjct: 62 --GFFILEITPAQIDE---LRKIMSMNEIM----------VICFAKVLEQLKPDIVYADA 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIA-SKADSTYPVVGAASICAKVSRDSAL- 219
+ K +E F E + +K + + I+ +AD+ YPVV AASI AKV RD +
Sbjct: 107 ADVK--AERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDELIE 164
Query: 220 ---KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWSTASKILK 275
K W+ +GSGYP DP TK FL + G FP++VR SW T I +
Sbjct: 165 EIKKEWSVD---------FGSGYPSDPKTKAFLLKWGKEHDGKFPEIVRQSWQTVENIRE 215
Query: 276 E 276
E
Sbjct: 216 E 216
>sp|Q8U036|RNH2_PYRFU Ribonuclease HII OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=rnhB PE=3 SV=1
Length = 224
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGP +GP+V T + N E+ L+N+G DSK LT +R ++ I +
Sbjct: 5 GIDEAGRGPAIGPLVVATVVVDEKNIEK-LRNIGVKDSKQLTPHERKNLFSQIT--SIAD 61
Query: 104 GWMVEIISPNVICN-----SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG 158
+ + I+SP I N + L +K++L S LI AA V+ + +
Sbjct: 62 DYKIVIVSPEEIDNRSGTMNELEVEKFALALNSLQIKPALIY-ADAADVDANR-FASLIE 119
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+YK K I KA D+ YPVV AASI AKV RD
Sbjct: 120 RRLNYKAK---------IIAEHKA---------------DAKYPVVSAASILAKVVRDEE 155
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
++ Q G +GSGYP DP TKK+L E FP +VR +W T KI
Sbjct: 156 IEKLKKQYG------DFGSGYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETVRKI 204
>sp|C6A1I4|RNH2_THESM Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=rnhB PE=3 SV=1
Length = 224
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 116/231 (50%), Gaps = 32/231 (13%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPV+GP+V A ++ E + LG DSK L+ KKR+++ + I +
Sbjct: 5 GIDEAGRGPVVGPLVIA-AVVIDESKIEKFEALGVKDSKKLSPKKREELFEKIIE--LVD 61
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-AAGVNVREVYVDTVGPPES 162
+ + +SP I +++ ++N D + KV+ + + VY+D
Sbjct: 62 DYFILELSPEDID-----KREGTMN----DFEVENFAKVLNSLKIKPDLVYIDA------ 106
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
+++ E V + S YP + A KADS Y V AASI AKV+RD A++
Sbjct: 107 -----ADVNEERFGIVVREKLSFYPKIIA--EHKADSKYIPVAAASILAKVTRDKAIERL 159
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+I N GSGYP DP+T+KFL E FP +VR SW T KI
Sbjct: 160 K-----EIYGNI-GSGYPSDPITRKFLEEYYKEHGSFPPVVRRSWKTLKKI 204
>sp|Q468N6|RNH2_METBF Ribonuclease HII OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=rnhB PE=3 SV=1
Length = 224
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 117/247 (47%), Gaps = 45/247 (18%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G +++ +LK LG ADSK LT KKR+ + I K
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKI-EESRAHILKVLGVADSKKLTPKKREQLAAQIKKHAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVI-----------AAGVNVR 150
G+ V +SP+ I R+ ++NE+ + KV+ AA VN
Sbjct: 62 --GFFVLEVSPSQIDE---LRKIMTMNEI----MVVCFSKVLEQLKPDLLYADAADVNAE 112
Query: 151 EVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASIC 210
+ + Y K + E+ I +AD +TYPVV AASI
Sbjct: 113 RFATNI---RKQYSKTNPDHAKEIEIISMHQAD---------------ATYPVVSAASII 154
Query: 211 AKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWST 269
AKV RD ++ + G+ +GSGYP DP TK+FL G FP++VR SW T
Sbjct: 155 AKVRRDELIEELKKEWGLD-----FGSGYPSDPKTKEFLLNWGKEHSGEFPEIVRQSWQT 209
Query: 270 ASKILKE 276
I +E
Sbjct: 210 VENIREE 216
>sp|B6YVT5|RNH2_THEON Ribonuclease HII OS=Thermococcus onnurineus (strain NA1) GN=rnhB
PE=3 SV=1
Length = 227
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 109/233 (46%), Gaps = 36/233 (15%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAGRGPVLGPMV A + N L+ LG DSK LT K+R+ + D I
Sbjct: 5 GIDEAGRGPVLGPMVIA-AVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEI------- 56
Query: 104 GWMVEIISPNVICN---SMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
V+++ VI + ++ +LNE + ++ + + V VY+D
Sbjct: 57 ---VQLLDDYVILELWPEEIDSREGTLNEFEVE---NFVKALNSLKVKPDVVYIDAADVK 110
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E+ F E + +K D ++ KAD + V AASI AKV+RD A++
Sbjct: 111 EAR-------FGE---EIKAKLDFEADIIAE---HKADDKFVPVSAASILAKVARDRAIE 157
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
Q G GSGYP DP T+ FL E FP +VR +W T KI
Sbjct: 158 KLKDQYG------EIGSGYPSDPRTRTFLEEYYRKHGEFPPIVRRTWKTLKKI 204
>sp|Q8PTA3|RNH2_METMA Ribonuclease HII OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnhB PE=3
SV=1
Length = 220
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 116/237 (48%), Gaps = 25/237 (10%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAG+GPV+GPM G ++ +LK LG ADSK LT KKR+ + I K
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKI-DESKAHILKVLGVADSKKLTPKKREQLASQIKKHAD 61
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
G+ + +SP+ I R+ S+NE+ V+ + ++ D V
Sbjct: 62 --GYFIFEVSPSQIDE---LRKIMSMNEIM----------VVCFAKVLEQLKPDIVYADA 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYP-VVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ K +E F E ++ +K + + +AD+ YPVV AASI AKV RD ++
Sbjct: 107 ADVK--AERFAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDELIE 164
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWSTASKILKE 276
+ I +GSGYP DP T+ FL + G FP +VR SW T I +E
Sbjct: 165 ELKREWCID-----FGSGYPSDPKTRGFLLKWGKEHGGDFPDIVRQSWQTVENIREE 216
>sp|Q57599|RNH2_METJA Ribonuclease HII OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rnhB PE=1 SV=1
Length = 230
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++GIDEAGRGPVLGPMV A+ + EE LK LG DSK LT+ KR + + EN
Sbjct: 3 IIGIDEAGRGPVLGPMVV-CAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLL--EN- 58
Query: 102 WLGW----MVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR----EVY 153
LG+ ++E N + NS+ +LN++ +A + + +I +N+R E+Y
Sbjct: 59 -LGYVEKRILEAEEINQLMNSI------NLNDIEINAFSKVAKNLIEK-LNIRDDEIEIY 110
Query: 154 VDTVGP-----PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAAS 208
+D +S+K K+ +I E + + A+ KAD+ YPVV AAS
Sbjct: 111 IDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAE-----------HKADAKYPVVSAAS 159
Query: 209 ICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268
I AK RD + + G GSGYP DP T KFL + P + R W
Sbjct: 160 IIAKAERDEIIDYYKKIYG------DIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWK 213
Query: 269 TASKIL 274
T +IL
Sbjct: 214 TCKRIL 219
>sp|O74035|RNH2_PYRKO Ribonuclease HII OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnhB PE=1 SV=1
Length = 228
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 109/233 (46%), Gaps = 32/233 (13%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ GIDEAGRGPV+GPMV A +N+ L+ L DSK LT K+R+ + + I
Sbjct: 3 IAGIDEAGRGPVIGPMVIA-AVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEIL--GV 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+++ + P+VI + ++ +LNE + + + + V +Y D
Sbjct: 60 LDDYVILELPPDVIGS-----REGTLNEFEVE---NFAKALNSLKVKPDVIYADAADVDE 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
E + ++L E VA KAD +PVV AASI AKV+RD A+
Sbjct: 112 ERFARELGERLNFEAEVVAK--------------HKADDIFPVVSAASILAKVTRDRAV- 156
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
E ++ E GSGYP DP T+ FL FP +VR W T KI
Sbjct: 157 -----EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKI 204
>sp|A6UUM1|RNH2_META3 Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnhB PE=3 SV=1
Length = 277
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 41/255 (16%)
Query: 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKN---LGCADSKALTEKKRDDILD 94
+ ++G+DEAGRGPVLGPMV + LKN L DSK ++ +R+++ +
Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQD----LKNFEKLDIKDSKKHSKNRREELFE 73
Query: 95 SICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV------------ 142
I ++E + + + N++ +LN++ A LI V
Sbjct: 74 MIINNYDVRYEILEAKTIDKLMNTI------NLNKIELMAFTKLINSVLKEEYPNYKENS 127
Query: 143 -IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTY 201
I E+Y+D E K ++I +LI+ ++ ++ KAD Y
Sbjct: 128 KIQTATPQIEIYIDACSSNE--KAFANQIKSKLIVN----DENNIKIIAE---HKADENY 178
Query: 202 PVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQ 261
+V AASI AKV RD ++ + G GSGYP D +T+K+L+ ++ P+
Sbjct: 179 KIVSAASIIAKVIRDRKIEEYKKIYG------EIGSGYPSDKITQKYLANYVEKNRELPE 232
Query: 262 LVRFSWSTASKILKE 276
+ R SW+T+ K+LK+
Sbjct: 233 IARKSWNTSKKLLKK 247
>sp|A5ULV6|RNH2_METS3 Ribonuclease HII OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=rnhB PE=3 SV=1
Length = 207
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
VLGIDEAGRG VLGP+V P + + +L+ +G DSK LT +R IL K+
Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVP-EKMDIVLERMGVKDSKRLTPNRR-TILSRKLKK-- 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ + +IS I N +R +LNE+ IG+ + I + +N + VD V
Sbjct: 59 MFEYDLVVISAQDIDN--MRADGINLNEIER---IGMEK--ILSNLNPEKAIVDAVDIKA 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL- 219
E ++ KL+ D+ VV KAD Y V AASI AK RD+ +
Sbjct: 112 ERFQNKLAN-------------DTGVNVVA---EHKADDNYIEVSAASIIAKQERDAHIA 155
Query: 220 ---KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF---PQLVRFSWSTASKI 273
K + GI GSGYP DP+TKKFL+ F + P VR SW+T K+
Sbjct: 156 EINKDYIKMGGI-------GSGYPSDPITKKFLTN-----FTYDEMPDFVRKSWATVEKM 203
>sp|A2BL34|RNH2_HYPBU Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM
9403) GN=rnhB PE=3 SV=1
Length = 240
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 112/234 (47%), Gaps = 37/234 (15%)
Query: 43 LGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+GIDEAGRGPV+GPM V G A C N+ + L LG DSK LT R + I + A
Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVC--SNDIDKLVALGVRDSKQLTPVVRAKLYGEILR-VA 66
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+V++ P + +++ +LN++ + + ++ + VYVD VG PE
Sbjct: 67 LHSVIVKL--PPALLDAV------NLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPE 118
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+LS +I AD TYP+V AASI AKV RD+ ++
Sbjct: 119 KLAARLSGRLGVRVIA----------------EPGADKTYPIVSAASIVAKVVRDAEIRM 162
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENI--DPVFGFPQLVRFSWSTASKI 273
G++ GSGYP DP T +L+E +P P VR +WST +I
Sbjct: 163 LRRLYGVR------GSGYPTDPETIAWLAEEYRRNPA-NPPWFVRRTWSTLKRI 209
>sp|Q74MH3|RNH2_NANEQ Ribonuclease HII OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnhB
PE=3 SV=1
Length = 200
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 39/209 (18%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
G+DEAGRGP++GPMV A D+ LK LG DSK LT+++R+++ + I K N+ +
Sbjct: 5 GVDEAGRGPIIGPMV--IALVIGDSG--YLKELGVKDSKLLTKEQREELFNEIVK-NSLV 59
Query: 104 GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESY 163
+ EI+SP++I +Y+LNE+ LI + + + +D+ PE+Y
Sbjct: 60 KY--EIVSPSLI-------DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENY 107
Query: 164 KKKLSEIFPELI-ITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
K ++ + + + I +K + P+V AASI AKV RD ++
Sbjct: 108 KLRILKYLKKRVKIITKNKGEED----------------PLVAAASIVAKVIRDREIEKI 151
Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSE 251
Q GI +GSGYP D T+K L +
Sbjct: 152 KEQTGID-----FGSGYPSDKRTRKALEQ 175
>sp|Q2FP80|RNH2_METHJ Ribonuclease HII OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=rnhB PE=3 SV=1
Length = 212
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 109/238 (45%), Gaps = 37/238 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAG+G VLGPMV C + + L LG ADSK L+ K R+ I I A
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAVGC---TDMDDLIALGVADSKKLSSKSREKISADI---KA 55
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNE-VSHDAAIGLIRKVIAAGVNVREVYVDTVG-P 159
+ + I + + I LRR ++NE V+ A LI +N YVD
Sbjct: 56 QFPFSIVIRTAHDI--DELRRT-MTMNEIVARSHAEALI------PLNCTCAYVDACDVS 106
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
E Y++ +S P VA KADS +P V AASI AKV RD +
Sbjct: 107 EERYEETVSSFSPPDCTIVARH--------------KADSLFPPVSAASIIAKVERDRII 152
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
E + E GSGYP DPVT +L++ I P + R SW T +L +K
Sbjct: 153 ------EELSKEYGDIGSGYPSDPVTITYLTKYIRHHNQPPVIARSSWETVKNLLHQK 204
>sp|Q0W5R8|RNH2_UNCMA Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB
PE=3 SV=1
Length = 224
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 33/242 (13%)
Query: 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
K ++GIDEAGRGPV+GP+V ++ + ++ +G DSK L+ KKR++ ++
Sbjct: 4 KRTSTIMGIDEAGRGPVIGPLVV-CGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAAL 62
Query: 97 CKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR--KVIAAGVNVREVYV 154
+N + + + ++ P I ++ + +LN + + GLIR K A ++ +V
Sbjct: 63 --KNKY-KYELSVLPPQEI-DARFESED-NLNRLEVNCFAGLIRSAKPTIAYLDACDVNA 117
Query: 155 DTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVS 214
+ G I + D +V A +ADS YP+V AASI AKV
Sbjct: 118 ERFG-----------------INIKKCLDFELEIVSA---HEADSKYPIVSAASIIAKVH 157
Query: 215 RDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
RDS ++ + + G + GSGYP DPVT FL P R SW T++ ++
Sbjct: 158 RDSLIREISEKMGEDV-----GSGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVI 212
Query: 275 KE 276
+
Sbjct: 213 AD 214
>sp|Q2NEI6|RNH2_METST Ribonuclease HII OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=rnhB PE=3 SV=1
Length = 212
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 104/235 (44%), Gaps = 35/235 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+LGIDEAGRG V+GP+V G K L +G DSK L KKR I I K
Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKK-KKIRFLNRIGVKDSKQLNMKKRTIISRKIKK--- 64
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+ II P + R +LNE+ + +I K++ Y+D + E
Sbjct: 65 -IAQFKTIIIPAHTIDEK-RNNDINLNEIETEGMEEII-KIMKPNA----CYIDCIDVRE 117
Query: 162 S-YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ + K+ +I P + + K AD TY +V AASI AKV RD L
Sbjct: 118 NRFHDKIQKINPNMTVVTEHK---------------ADETYKIVSAASIIAKVERDKQL- 161
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
E I+ E + GSGYP D T +L + FP ++R +W T I K
Sbjct: 162 -----EIIRQEYGSVGSGYPSDKNTINYLKTIKNN--QFPPIIRKTWKTIENITK 209
>sp|Q974Z3|RNH2_SULTO Ribonuclease HII OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhB PE=3 SV=1
Length = 208
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 43/240 (17%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V+GIDEAGRG ++GPM+ K++ + LKN+G DSK LT +R+ + D IC +
Sbjct: 2 IVVGIDEAGRGSLIGPMIVA-GVAIKNDRLKFLKNIGVKDSKQLTRNRREKLFDIICSYS 60
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR--EVYVDTVG 158
G+ + +SP I + +LNE+++ A I K+I + V + + +D VG
Sbjct: 61 E--GFTIVKVSPEEIDSE-------NLNELTYKAMI----KIIYSLVEFKPIRISIDKVG 107
Query: 159 PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSA 218
+++ + II + + + I + AD + AASI AKV RD+
Sbjct: 108 N--------TKVVEQEIIKLGMEPN---------IVTNADVYFVEASAASIIAKVIRDNI 150
Query: 219 LKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
+ + + G +GSGYP DP T ++ P ++R SW KIL+E A
Sbjct: 151 IDTLKSKYG------DFGSGYPSDPKTVNWVKNVYKEYLTPPPIIRRSW----KILQEIA 200
>sp|A0B796|RNH2_METTP Ribonuclease HII OS=Methanosaeta thermophila (strain DSM 6194 / PT)
GN=rnhB PE=3 SV=1
Length = 211
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 45/241 (18%)
Query: 41 CVLGIDEAGRGPVLGPM-VYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDI---LDSI 96
+LG+DEAG+GPV+G M V G + +D + L G DSK L+ +R+ + + SI
Sbjct: 3 LILGVDEAGKGPVIGSMFVAGVVFSEEDIFD--LAACGVKDSKLLSPTRRESMERKILSI 60
Query: 97 CKENAWLGWMVEIISPNVICNSM----LRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREV 152
+E+ L + I + SM +R ++ + D AI + AA VN
Sbjct: 61 ARESFVLEVTAQQIDDLRMVMSMNEIMVRAHSRVVSRLQADRAI-----LDAADVNA--- 112
Query: 153 YVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAK 212
E + +++ E+ + I +A AD + VV AASI AK
Sbjct: 113 --------ERFAQRVREVSGKPIDILAEH--------------NADRKHIVVAAASIIAK 150
Query: 213 VSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272
V+RD +++ G GSGYP DP T +FL E I+ P VR SWSTA +
Sbjct: 151 VARDRSIRDLEAALG-----RPLGSGYPSDPATVRFLKEWIEENGDLPSFVRKSWSTAQR 205
Query: 273 I 273
+
Sbjct: 206 L 206
>sp|A2STJ6|RNH2_METLZ Ribonuclease HII OS=Methanocorpusculum labreanum (strain ATCC 43576
/ DSM 4855 / Z) GN=rnhB PE=3 SV=1
Length = 212
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
+ G+DEAG+GPVLGPM+ D +E L+ LG DSK L+ KKR+ + + I +
Sbjct: 3 ICGVDEAGKGPVLGPMITAGVLV-SDMSE--LEMLGIKDSKKLSPKKRESLFEEI--TFS 57
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
W + V + +P I ++ ++N + ++R + A V + V+
Sbjct: 58 WKTYTV-VRTPFDI-----DSREGTMNAFTASCHADVVRALCADFVYLDACDVN------ 105
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIAS--KADSTYPVVGAASICAKVSRDSAL 219
++ F E ++ ++ + A + S KAD+ Y VVGAASI AKV+RD +
Sbjct: 106 ------AKRFGENVLRLSGSS--------AHVCSEHKADAKYAVVGAASIVAKVTRDRCI 151
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274
++ E GSGYP DP T FL+E I P R SW T IL
Sbjct: 152 AD------LKEEYGEIGSGYPSDPATISFLTEYIRTRGEVPLCARRSWQTVQDIL 200
>sp|Q6KZK4|RNH2_PICTO Ribonuclease HII OS=Picrophilus torridus (strain ATCC 700027 / DSM
9790 / JCM 10055 / NBRC 100828) GN=rnhB PE=3 SV=1
Length = 199
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 103/235 (43%), Gaps = 40/235 (17%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
CV GIDEAGRGPV+GPMV C D N DSK LT KR I + +
Sbjct: 2 CVCGIDEAGRGPVIGPMVMAMV-CADD------INFYVNDSKLLTRNKRSLIFNDV---- 50
Query: 101 AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPP 160
+ L II+P I +++ +K+SLN + A LI K ++Y+D
Sbjct: 51 SGLYHKYYIINPAEIDDAV---KKHSLNNLEEQYAEKLILK-----AECEKIYIDCFDVN 102
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
ES +L I D T V AD +V AASI AKV RD+ ++
Sbjct: 103 ES---RLERILK----------DRTGKEV--ICRHHADRDIKIVSAASIIAKVLRDNEIE 147
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
G +GSGYP DP T +FL +I +VR W T +++
Sbjct: 148 KLKSIYG------DFGSGYPSDPKTLRFLEHSIINHDNIDNIVRKEWKTYKNLVQ 196
>sp|Q97W56|RNH2_SULSO Ribonuclease HII OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=rnhB PE=3 SV=1
Length = 212
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 47/242 (19%)
Query: 43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
+GIDEAGRG ++GPM+ D + LK +G DSK LT ++R+ + D + N
Sbjct: 3 VGIDEAGRGALIGPMIVAGVVI-SDTKLKFLKGIGVKDSKQLTRERREKLFDIVA--NTV 59
Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
+ V + P I N Y+LN++++DA +I + + N V VD VG +
Sbjct: 60 EAFTVVKVFPYEIDN-------YNLNDLTYDAVSKIILSL--SSFNPEIVTVDKVGDEKP 110
Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
ELI + K++ + KAD + AASI AKV RD+ +
Sbjct: 111 --------VIELINKLGYKSN---------VVHKADVLFVEASAASIIAKVIRDNYI--- 150
Query: 223 TFQEGIQIENNAWGSGYPGDPVT----KKFLSENIDPVFGFPQLVRFSWSTASKILKEKA 278
E Q+ + +GSGYP DP T K F +N +P P ++R SW KIL+ A
Sbjct: 151 --DELKQVYGD-FGSGYPADPRTIKWLKSFYEKNPNP----PPIIRRSW----KILRSTA 199
Query: 279 VL 280
L
Sbjct: 200 PL 201
>sp|Q3IRF6|RNH2_NATPD Ribonuclease HII OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=rnhB PE=3 SV=1
Length = 212
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 35/235 (14%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
++G+DEAG+GPV+G M P E L + G DSK LT+ +R+ + D + +
Sbjct: 4 LVGVDEAGKGPVVGSMFVAAVRAPT----EALPD-GIDDSKRLTDDRREALADRLRDADR 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPE 161
+VE ++ ++N+++ A + V A+G E + G +
Sbjct: 59 IDVAVVECQPADI--------DDANMNDLTVAAHAAALDGVAASG----ETVLCDAGDVD 106
Query: 162 SYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
+ + F + + A+ V A AD + +VGAASI AK +R+ ++
Sbjct: 107 AGR------FADRVAAAATLD------VSVAAEHGADGSDDLVGAASIIAKSARERHVEQ 154
Query: 222 WTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ Q G A GSGYP DP TK FL E + GFP VR SWST +I E
Sbjct: 155 LSEQYG------AVGSGYPSDPTTKAFLREAFEQEGGFPPCVRTSWSTCERIRAE 203
>sp|Q9YET5|RNH2_AERPE Ribonuclease HII OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=rnhB PE=3 SV=2
Length = 225
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 45/240 (18%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
V+G+DEAGRG ++G +V + ++ L++LG DSK L+ R ++ +E
Sbjct: 3 IVVGVDEAGRGSLVGDLVV-AGFAVEEARLGELQSLGVRDSKQLSPAARVEL----YREI 57
Query: 101 AWLGWM-VEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA-AGVNVREVYVDTVG 158
+ +G+ VE I P I ++N + A ++ ++++ GV+ V VD G
Sbjct: 58 SGVGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYG 110
Query: 159 PPESYKKKLSE--IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
+ + L+ I P I+ + KADS YPVV AASI AKV RD
Sbjct: 111 DVQGLRLALTRLGIEPRSIL----------------VEEKADSRYPVVSAASIVAKVVRD 154
Query: 217 SALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG---FPQLVRFSWSTASKI 273
+ L+ G++ GSGYP DP T++++ E VF P+++R++WST K+
Sbjct: 155 ARLQVLRRMYGVR------GSGYPSDPETREWVRE----VFARGEAPRVIRYTWSTVRKL 204
>sp|O29634|RNH2_ARCFU Ribonuclease HII OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rnhB PE=1
SV=1
Length = 205
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 48/236 (20%)
Query: 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWL 103
GIDEAG+G V+GP+V C ++E+ L+ LG DSK L++ +R+++ + I K
Sbjct: 4 GIDEAGKGCVIGPLVVAGVAC---SDEDRLRKLGVKDSKKLSQGRREELAEEIRK----- 55
Query: 104 GWMVEIISPNVICNS-MLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVR---EV-YVDTVG 158
IC + +L+ +L+E I I K A + +R E+ YVD+
Sbjct: 56 -----------ICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPD 104
Query: 159 P-PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDS 217
PE ++L EI ++ KAD YP+V AASI AKV R+
Sbjct: 105 VIPERLSRELEEITGLRVVA----------------EHKADEKYPLVAAASIIAKVERER 148
Query: 218 ALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+ E ++ + +GSGY DP T++ L E I P VR W T S +
Sbjct: 149 EI------ERLKEKFGDFGSGYASDPRTREVLKEWI-ASGRIPSCVRMRWKTVSNL 197
>sp|A7I9P7|RNH2_METB6 Ribonuclease HII OS=Methanoregula boonei (strain 6A8) GN=rnhB PE=3
SV=1
Length = 213
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 107/244 (43%), Gaps = 49/244 (20%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI---CK 98
+ G+DEAG+G VLGPMV + E++ G DSK L+ +R+ + I CK
Sbjct: 2 ICGVDEAGKGSVLGPMVIAGVGV---GSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCK 58
Query: 99 ENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT-- 156
+ EI RR E++ + + V+ A + YVD
Sbjct: 59 VATVVISAAEI--------DAFRR------EMTLNTCVARAHAVVIAQLAPEIAYVDACD 104
Query: 157 VGP---PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKV 213
V P E+ + LS P I++ ADSTYPVV AASI AKV
Sbjct: 105 VNPFRYAETVRGYLSS--PCEIVS----------------EHHADSTYPVVSAASIVAKV 146
Query: 214 SRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+RD + + G QI GSGYP DP T +L+ ID P + R SW T S +
Sbjct: 147 TRDREIAKLAKKYG-QI-----GSGYPSDPETIAYLNAYIDEHRIPPPIARKSWKTVSTL 200
Query: 274 LKEK 277
L +K
Sbjct: 201 LAKK 204
>sp|Q8TYV5|RNH2_METKA Ribonuclease HII OS=Methanopyrus kandleri (strain AV19 / DSM 6324 /
JCM 9639 / NBRC 100938) GN=rnhB PE=3 SV=1
Length = 210
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 42/237 (17%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V+GIDEAGRGPV GPMV PK EL LG DSK LT R ++ ++ +
Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAPK---REL--GLGARDSKELTRSARRRLIRALMSDER 58
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG--P 159
L + I+ P I + + +A L+R+ + EV +D G
Sbjct: 59 -LRVDLRIVWPWEIDEE-------GVAKAEFEAIRELVRRAMPD-----EVILDKPGNYS 105
Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
PE +++L PE I +A + +AD+ Y VV AASI AK RD +
Sbjct: 106 PERLRRELD--LPEGINLIAEE--------------RADAKYEVVSAASIVAKTYRDWIV 149
Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE 276
+ +++E GSGYP DP T L + + R SW T ++ E
Sbjct: 150 RL------LELEYGEVGSGYPSDPRTVDRLRRELRRGGELLKYFRRSWETYKRVESE 200
>sp|A0RV25|RNH2_CENSY Ribonuclease HII OS=Cenarchaeum symbiosum (strain A) GN=rnhB PE=3
SV=1
Length = 205
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 35/233 (15%)
Query: 42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
V G+DEAGRG ++GP+V ++ E LK++G DSK LT K R+ + I N
Sbjct: 3 VCGVDEAGRGSLVGPLVIAGVAIKRNRMRE-LKSMGVRDSKKLTRKARESLYPEIV--NM 59
Query: 102 WLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PP 160
+ + + P V+ S+ R + LN++ A + R + G YVD+ P
Sbjct: 60 ADSYHISRVPPGVVDRSVGR---HMLNDLE---ARYMARVITRLGHGT--TYVDSCDVNP 111
Query: 161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
+ ++SE+ + + +Y +AD + +V AASI AKV+RD +++
Sbjct: 112 RRFGGRVSEM--------SGRTVRSY--------HRADDRFVIVSAASILAKVARDRSIE 155
Query: 221 SWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKI 273
+++ GSGYP D T F+ + P VR SW A I
Sbjct: 156 RLR-------KSHDVGSGYPSDRRTVGFVRGYYNKNGAMPPFVRRSWRPARLI 201
>sp|Q4JA60|RNH2_SULAC Ribonuclease HII OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnhB
PE=3 SV=1
Length = 212
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 52/245 (21%)
Query: 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNN-EELLKNLGCADSKALTEKKRDDILDSICKE 99
++GIDEAGRG ++GPMV A D+N + L +G DSK LT KKR+ + I +
Sbjct: 2 ILVGIDEAGRGSLIGPMV--VAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLFGVILEY 59
Query: 100 NAWL----GWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVD 155
+ + + EI S N LNE+++ A I +I + + N V VD
Sbjct: 60 SYAISLVKAYPEEIDSEN-------------LNEITYRAMIQIIHSM--SVYNPSIVTVD 104
Query: 156 TVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSR 215
VG + +++ II + S + + AD Y V AASI AKV R
Sbjct: 105 KVGNASAVERE--------IININS---------SPRVENNADVKYVEVSAASIIAKVVR 147
Query: 216 DSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSE--NIDPVFGFPQLVRFSWSTASKI 273
D+ + G +GSGYPGD T +++ + + P + P ++R SW KI
Sbjct: 148 DNIINELKKTYG------DFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW----KI 196
Query: 274 LKEKA 278
L++ A
Sbjct: 197 LQDIA 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,183,593
Number of Sequences: 539616
Number of extensions: 6628454
Number of successful extensions: 21971
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 548
Number of HSP's that attempted gapping in prelim test: 20616
Number of HSP's gapped (non-prelim): 1267
length of query: 401
length of database: 191,569,459
effective HSP length: 120
effective length of query: 281
effective length of database: 126,815,539
effective search space: 35635166459
effective search space used: 35635166459
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)