Query psy12553
Match_columns 401
No_of_seqs 299 out of 1387
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:18:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kio_A Ribonuclease H2 subunit 100.0 5E-87 1.7E-91 654.9 22.4 300 11-335 1-300 (301)
2 1eke_A Ribonuclease HII; endon 100.0 4.9E-60 1.7E-64 448.5 17.5 207 41-276 2-221 (230)
3 1i39_A Ribonuclease HII, RNAse 100.0 4.4E-59 1.5E-63 441.3 18.4 203 36-275 16-219 (225)
4 1io2_A Ribonuclease HII; endon 100.0 2.4E-59 8.1E-64 439.6 15.3 203 41-276 2-207 (213)
5 1uax_A Ribonuclease HII, ribon 100.0 2E-58 6.8E-63 435.3 13.7 203 41-276 2-207 (220)
6 2etj_A Ribonuclease HII, RNAse 100.0 5.7E-53 2E-57 404.1 14.2 193 37-288 21-217 (250)
7 2d0b_A RNAse HIII, ribonucleas 100.0 9.3E-47 3.2E-51 371.5 16.8 205 38-276 89-305 (310)
8 3vn5_A RNAse HIII, ribonucleas 100.0 2E-43 6.7E-48 340.1 15.2 178 44-268 75-256 (257)
9 2f8e_A VPG protein; RNA-depend 41.2 6.9 0.00024 24.8 0.4 7 51-57 1-7 (26)
10 2q2e_A Type II DNA topoisomera 27.9 25 0.00085 34.9 2.1 17 235-252 225-241 (369)
11 1d3y_A DNA topoisomerase VI A 24.0 29 0.001 33.4 1.8 17 234-251 151-167 (301)
12 1jr5_A 10 kDa anti-sigma facto 20.6 27 0.00092 28.5 0.6 20 202-221 10-29 (90)
No 1
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A
Probab=100.00 E-value=5e-87 Score=654.90 Aligned_cols=300 Identities=45% Similarity=0.808 Sum_probs=245.3
Q ss_pred ccchhhhhccCCCCceEEecCCCcCCCCCCcEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHH
Q psy12553 11 TEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD 90 (401)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~s~~p~~~~~~~~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe 90 (401)
|||++| ++||+.+|++.|+||++|++.++++|||||||||++||||+|||++|.+.. ..|..+||+|||+||+++|+
T Consensus 1 ~~~~~~--~~~~~~~~~~~s~~p~~~~~~~~v~GvDEaGRGplaGPvV~aavil~~~~~-~~l~~~gl~DSKkLs~~kRe 77 (301)
T 3kio_A 1 MDLSEL--ERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRL-ADLEALKVADSKTLTENERE 77 (301)
T ss_dssp CCTTTT--GGGTSSEEEEECCCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGG-GGCCCCCSCC--CCCHHHHH
T ss_pred Cchhhh--hhcCccCEEEeCCCchhhcCCceEEeeeCCCCCCccccceEEEEEEchhhh-hhHhhcCCCccccCCHHHHH
Confidence 899999 999999999999999999999999999999999999999999999999876 67788999999999999999
Q ss_pred HHHHHHhhccceeeEEEEEEChHhHHHHhHhHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCCCccchhhhhhhc
Q psy12553 91 DILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEI 170 (401)
Q Consensus 91 ~L~~~I~~~~~~v~~aV~visp~eId~~ml~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g~p~~Y~~~L~~~ 170 (401)
+||+.|++...+++|+|.+++|++||+.|+++.++|||.++|++++.+|+++++++++++.||||+++.|++|+++|++.
T Consensus 78 ~L~~~I~~~~~a~~~~v~~~s~~eId~~m~~~~~~nlN~l~~~~~~~~i~~~~~l~~~p~~vlVD~~~~p~~y~~~L~~~ 157 (301)
T 3kio_A 78 RLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQH 157 (301)
T ss_dssp HHHHHHHHTTTTCEEEEEEECHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHS
T ss_pred HHHHHHHhhcccceEEEEecCHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHHhhc
Confidence 99999996446789999999999999999988889999999999999999999889999999999999999999999999
Q ss_pred cCcceEEEeecCCCCCccccccccccCCCccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHHHHH
Q psy12553 171 FPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLS 250 (401)
Q Consensus 171 fp~i~i~v~~KADs~y~v~~~~~~~kgD~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~~L~ 250 (401)
+|++++++++|||++ ||+||||||||||+||++|++|.|.+.+.+.+++|||||||||+|++||+
T Consensus 158 ~p~~~~~~~~KgDs~---------------~~sVAAASIlAKV~RD~~M~~~~f~e~l~~~~~~~GsGYPSDp~T~~~L~ 222 (301)
T 3kio_A 158 FPGIEVTVKAKADSL---------------FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLR 222 (301)
T ss_dssp STTSEEEEETTGGGT---------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSSTTSHHHHHHHH
T ss_pred CCCCceEEEeccchh---------------hhHHHHHHHHHHHHHHHHHHHhhhhhhHHhhCCCCCCcCCCCHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccccccccCchhHHHHhhccCceeeeccCCchhhhhccccccccccccccCCCCCCCCccccccccccccCCC
Q psy12553 251 ENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKESPY 330 (401)
Q Consensus 251 ~~i~~~fG~p~~hR~SW~tvk~il~~~~~~v~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~r~~ff~~r~l 330 (401)
++++++||+|++||+||+|++++|++++++|+|++++++++ ..++++|++||.++. +. +.+++||+||++|+|
T Consensus 223 ~~~~~~~G~p~~vR~SW~tvk~~l~~~~~~v~w~~~~~~~~---~~~~~~~~~~f~~~~-~~---~~~~~~~~~f~~~~l 295 (301)
T 3kio_A 223 KHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED---PERPGKITSYFSQGP-QT---CRPQAPHRYFQERGL 295 (301)
T ss_dssp TTCBTTTBSCTTBCTTSHHHHHHHHHHSCCEECSCC--------------------------------------------
T ss_pred HcccccCCCCccccCCcHHHHHHHhcCCceeeecccccccc---cccchhHHHHhcCCC-cc---ccccccchhhHhhcc
Confidence 99999999999999999999999999999999997754221 124679999998652 22 235889999999999
Q ss_pred CCccc
Q psy12553 331 GGSKV 335 (401)
Q Consensus 331 ~~~~~ 335 (401)
++|++
T Consensus 296 ~~~~~ 300 (301)
T 3kio_A 296 EAASS 300 (301)
T ss_dssp -----
T ss_pred ccccc
Confidence 99875
No 2
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=100.00 E-value=4.9e-60 Score=448.55 Aligned_cols=207 Identities=34% Similarity=0.527 Sum_probs=181.4
Q ss_pred cEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhHHHHhH
Q psy12553 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSML 120 (401)
Q Consensus 41 ~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eId~~ml 120 (401)
.++|||||||||+|||||+|||++|.+.. ..|..+||+|||+||+++|++||+.|++ .+ +|+|.+++|++||+.|.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~-~~l~~~gv~DSK~Ls~~~Re~L~~~I~~--~~-~~~v~~~~~~eId~~~~ 77 (230)
T 1eke_A 2 IIIGIDEAGRGPVLGPMVVCAFAIEKERE-EELKKLGVKDSKELTKNKRAYLKKLLEN--LG-YVEKRILEAEEINQLMN 77 (230)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGH-HHHHTTTCC---CCCHHHHHHHHHHHHH--HS-EEEEEEECHHHHHHHTT
T ss_pred CEecccCCCCCCchhhheEEEEEEchhhh-hhhhhcCCCCcccCCHHHHHHHHHHHHH--hC-CEEEEEeCHHHHhcccc
Confidence 47999999999999999999999998876 6778899999999999999999999996 45 99999999999999875
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHc---CCCccEEEEcCCC-Cccchhhhhhhcc--------CcceEEEeecCCCCCcc
Q psy12553 121 RRQKYSLNEVSHDAAIGLIRKVIAA---GVNVREVYVDTVG-PPESYKKKLSEIF--------PELIITVASKADSTYPV 188 (401)
Q Consensus 121 ~~~~~NLN~l~~~aai~lI~~~l~~---gv~~~~V~VD~~g-~p~~Y~~~L~~~f--------p~i~i~v~~KADs~y~v 188 (401)
.+|||++++.++.++|+.+... |++++.|+||+++ +|.+|+++|++.+ |.+++++++|||++
T Consensus 78 ---~~Ni~~a~~~a~~~ai~~l~~~~~~~~~~~~vliD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~KgD~~--- 151 (230)
T 1eke_A 78 ---SINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAK--- 151 (230)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGT---
T ss_pred ---ccCHHHHHHHHHHHHHHHHhhhhccCCCCCEEEECCCCCChHHHHHHHhhhhcccccccCCCCceEEEECcccc---
Confidence 5799999999999999887765 6678999999998 6778988887654 44678888999999
Q ss_pred ccccccccCCCccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHHHHHhcCCCCcc-cccccccCc
Q psy12553 189 VGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSW 267 (401)
Q Consensus 189 ~~~~~~~kgD~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~~L~~~i~~~fG-~p~~hR~SW 267 (401)
|++||||||||||+||++|.+| ++.||+|||||||||+|++|++++++ .+| +|++||+||
T Consensus 152 ------------~~~VAAASIlAKv~RD~~m~~l------~~~yp~~gkGY~td~~t~~~l~~~~~-~~G~~~~~hR~Sf 212 (230)
T 1eke_A 152 ------------YPVVSAASIIAKAERDEIIDYY------KKIYGDIGSGYPSDPKTIKFLEDYFK-KHKKLPDIARTHW 212 (230)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHH------HHHTSCCTTSSTTSHHHHHHHHHHHH-HHSSCCTTBCTTS
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHH------HHHcCCCCCcCCchHHHHHHHHHHHH-HhCCCCHHHcCCC
Confidence 9999999999999999999986 57889999999999999999996554 456 889999999
Q ss_pred hhHHHHhhc
Q psy12553 268 STASKILKE 276 (401)
Q Consensus 268 ~tvk~il~~ 276 (401)
+|+++++++
T Consensus 213 ~~~~~~l~~ 221 (230)
T 1eke_A 213 KTCKRILDK 221 (230)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 999999865
No 3
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D*
Probab=100.00 E-value=4.4e-59 Score=441.26 Aligned_cols=203 Identities=33% Similarity=0.539 Sum_probs=178.2
Q ss_pred CCCCCcEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhH
Q psy12553 36 CKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVI 115 (401)
Q Consensus 36 ~~~~~~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eI 115 (401)
..+..+++|||||||||++||||+|||++|.+ ..|..+||+|||+||+++|++||+.|++ .+. |+|.+++|++|
T Consensus 16 ~~g~~~i~GvDEaGRGplaGPvV~aavil~~~---~~l~~~gv~DSKkLs~~kRe~L~~~I~~--~a~-~~v~~~s~~eI 89 (225)
T 1i39_A 16 PRGSHMKAGIDEAGKGCVIGPLVVAGVACSDE---DRLRKLGVKDSKKLSQGRREELAEEIRK--ICR-TEVLKVSPENL 89 (225)
T ss_dssp -----CEEEEEEECTTCSBSCEEEEEEEESCH---HHHHHTTCTTCTTCCHHHHHHHHHHHHH--HEE-EEEEEECHHHH
T ss_pred cCCCeEEEEecCCCCcCchhhhEEEEEEEcch---hhcccCCCCcCCcCCHHHHHHHHHHHHH--hCC-EEEEEECHHHH
Confidence 45678999999999999999999999999875 3466899999999999999999999995 455 99999999999
Q ss_pred HHHhHhHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCC-CccchhhhhhhccCcceEEEeecCCCCCcccccccc
Q psy12553 116 CNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PPESYKKKLSEIFPELIITVASKADSTYPVVGAAIA 194 (401)
Q Consensus 116 d~~ml~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g-~p~~Y~~~L~~~fp~i~i~v~~KADs~y~v~~~~~~ 194 (401)
|+.|. ++|||++++.++.++|+.+ .++.|+||+++ +|++|+++|++.+| +++++++|||++
T Consensus 90 D~~~~---~~Ni~~a~~~am~~ai~~l-----~~~~vlvD~~~~~~~~~~~~l~~~~~-~~~~~~~KgD~~--------- 151 (225)
T 1i39_A 90 DERMA---AKTINEILKECYAEIILRL-----KPEIAYVDSPDVIPERLSRELEEITG-LRVVAEHKADEK--------- 151 (225)
T ss_dssp HHHTT---TSCHHHHHHHHHHHHHHHH-----CCSEEEEEESSSCCHHHHHHHHHHHC-SEEEEEETGGGT---------
T ss_pred hhhcc---cccHHHHHHHHHHHHHHhC-----CCCEEEECCCCCChHHHHHHhhhcCC-CceEEEeccccc---------
Confidence 99763 5799999999888888764 35789999998 67889998887665 678889999999
Q ss_pred ccCCCccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHHHHHhcCCCCcccccccccCchhHHHHh
Q psy12553 195 SKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKIL 274 (401)
Q Consensus 195 ~kgD~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~~L~~~i~~~fG~p~~hR~SW~tvk~il 274 (401)
||+||||||||||+||++|++| ++.||+||||||+||+|++|+++++++ +|+|++||+||+|+++++
T Consensus 152 ------~~~VAAASIlAKv~RD~~m~~l------~~~yp~~gkGY~tD~~t~~hl~~~i~~-~g~~~~hR~Sf~~~~~~l 218 (225)
T 1i39_A 152 ------YPLVAAASIIAKVEREREIERL------KEKFGDFGSGYASDPRTREVLKEWIAS-GRIPSCVRMRWKTVSNLR 218 (225)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH------HHHHCCCCSSSTTSHHHHHHHHHHHHH-TCCCTTBCTTSHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHHHHH------HHHCCCCCCcCCChHHHHHHHHHhhhh-cCCCHHHcCCCHHHHHHH
Confidence 9999999999999999999986 577899999999999999999986666 899999999999999998
Q ss_pred h
Q psy12553 275 K 275 (401)
Q Consensus 275 ~ 275 (401)
+
T Consensus 219 ~ 219 (225)
T 1i39_A 219 Q 219 (225)
T ss_dssp C
T ss_pred h
Confidence 6
No 4
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=100.00 E-value=2.4e-59 Score=439.62 Aligned_cols=203 Identities=36% Similarity=0.579 Sum_probs=180.4
Q ss_pred cEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhHHHHhH
Q psy12553 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSML 120 (401)
Q Consensus 41 ~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eId~~ml 120 (401)
+++|||||||||++||||+|||++|.+.. ..|..+||+|||+||+++|++||+.|++ .+++|+|.+++|++||+.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~-~~l~~~gv~DSK~Ls~~~Re~L~~~I~~--~a~~~~v~~~~~~eId~~-- 76 (213)
T 1io2_A 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSL-PKLEELKVRDSKKLTPKRREKLFNEILG--VLDDYVILELPPDVIGSR-- 76 (213)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGH-HHHHHTTGGGCTTCCHHHHHHHHHHHHT--TCSEEEEEEECHHHHHTC--
T ss_pred CEeccCCCCCCCccchheEEEEEEChhhh-hhhhhcCCCCcccCCHHHHHHHHHHHHH--hCceEEEEEECHHHHcch--
Confidence 47999999999999999999999998876 6778899999999999999999999995 678899999999999984
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCC-CccchhhhhhhccC-cceEEEeecCCCCCccccccccccCC
Q psy12553 121 RRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PPESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKAD 198 (401)
Q Consensus 121 ~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g-~p~~Y~~~L~~~fp-~i~i~v~~KADs~y~v~~~~~~~kgD 198 (401)
++|||++++.++.++|+.+ ...++.|+||+++ +|.+|+.+|++.+| .+++++++|||++
T Consensus 77 ---~~Ni~~a~~~a~~~ai~~l---~~~p~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~------------- 137 (213)
T 1io2_A 77 ---EGTLNEFEVENFAKALNSL---KVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDI------------- 137 (213)
T ss_dssp ---SSCHHHHHHHHHHHHHHHC---SSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHH-------------
T ss_pred ---hhHHHHHHHHHHHHHHHhc---cccCCEEEECCCCCCHHHHHHHHhhccCCCCceEEEeCcccc-------------
Confidence 3699999999888887754 3467899999999 67789999988774 5788888999999
Q ss_pred CccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHHHHHhcCCCCcc-cccccccCchhHHHHhhc
Q psy12553 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWSTASKILKE 276 (401)
Q Consensus 199 ~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~~L~~~i~~~fG-~p~~hR~SW~tvk~il~~ 276 (401)
|++||||||||||+||++|.+| ++.||+|||||||||+|++|++++++ .+| +|++||+||+|++++++.
T Consensus 138 --~~~VAAASIlAKv~RD~~m~~l------~~~y~~~g~GY~td~~t~~~l~~~~~-~~G~~~~~hR~Sf~~~~~~l~~ 207 (213)
T 1io2_A 138 --FPVVSAASILAKVTRDRAVEKL------KEEYGEIGSGYPSDPRTRAFLENYYR-EHGEFPPIVRKGWKTLKKIAEK 207 (213)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH------HHHHSCCCSSCTTSHHHHHHHHHHHH-HHSSCCTTBCTTCHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHH------HHHcCCCCCcCCchHHHHHHHHHHHH-HhCCCChhhhCCCHhHHHHHHH
Confidence 9999999999999999999986 57788999999999999999996554 456 889999999999999865
No 5
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1
Probab=100.00 E-value=2e-58 Score=435.32 Aligned_cols=203 Identities=35% Similarity=0.624 Sum_probs=178.7
Q ss_pred cEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhHHHHhH
Q psy12553 41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSML 120 (401)
Q Consensus 41 ~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eId~~ml 120 (401)
.++|||||||||++||||+|||++|.+.. ..|..+||+|||+||+++|++|++.|++ .+++|+|.+++|++||+.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~-~~l~~~gl~DSK~Ls~~~Re~L~~~I~~--~a~~~~v~~~~~~eId~~-- 76 (220)
T 1uax_A 2 KVAGVDEAGRGPVIGPLVIGVAVIDEKNI-ERLRDIGVKDSKQLTPGQREKLFSKLID--ILDDYYVLLVTPKEIDER-- 76 (220)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGH-HHHHHHTGGGSTTSCHHHHHHHHHHHHH--HSSEEEEEEECHHHHHTC--
T ss_pred cEEeecCCCCCCchhhhEEEEEEEchhhh-hhhhhcCCCCcccCCHHHHHHHHHHHHH--hCceEEEEEECHHHHcCh--
Confidence 47999999999999999999999998876 6678899999999999999999999995 577899999999999984
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCC-CccchhhhhhhccC-cceEEEeecCCCCCccccccccccCC
Q psy12553 121 RRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVG-PPESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKAD 198 (401)
Q Consensus 121 ~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g-~p~~Y~~~L~~~fp-~i~i~v~~KADs~y~v~~~~~~~kgD 198 (401)
.+|||++++.++.++|+.+ ...++.|+||+++ +|..|+++|+..+| .+++++++|||++
T Consensus 77 ---~~Ni~~a~~~am~~ai~~l---~~~~~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~------------- 137 (220)
T 1uax_A 77 ---HHSMNELEAEKFVVALNSL---RIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAK------------- 137 (220)
T ss_dssp ---SSCHHHHHHHHHHHHHHTC---SSCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHH-------------
T ss_pred ---hhHHHHHHHHHHHHHHHhc---CCCCCEEEECCCCCChHHHHHHhhhccCCCCceEEEeccchh-------------
Confidence 2599999888887777643 4567789999998 57789999987764 4678888999999
Q ss_pred CccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHHHHHhcCCCCcc-cccccccCchhHHHHhhc
Q psy12553 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG-FPQLVRFSWSTASKILKE 276 (401)
Q Consensus 199 ~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~~L~~~i~~~fG-~p~~hR~SW~tvk~il~~ 276 (401)
|++||||||||||+||++|.+| ++.||+||+||||||+|++|+++.++ .+| +|++||+||+|+++++++
T Consensus 138 --~~~VAAASIlAKv~RD~~m~~l------~~~yp~~gkGY~td~~t~~~l~~~~~-~~G~~~~~hR~Sf~~~~~~l~~ 207 (220)
T 1uax_A 138 --YEIVSAASIIAKVTRDREIEKL------KQKYGEFGSGYPSDPRTKEWLEEYYK-QYGDFPPIVRRTWETARKIEER 207 (220)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH------HHHHCCCTTSCTTCHHHHHHHHHHHH-HHSSCCTTBCTTSHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHHH------HHHcCCCCCcCCchHHHHHHHHHHHH-HhCCCChhhcCCChhHHHHHHH
Confidence 9999999999999999999986 57789999999999999999996553 456 889999999999999874
No 6
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Probab=100.00 E-value=5.7e-53 Score=404.07 Aligned_cols=193 Identities=28% Similarity=0.301 Sum_probs=152.5
Q ss_pred CCCCcEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhHH
Q psy12553 37 KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVIC 116 (401)
Q Consensus 37 ~~~~~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eId 116 (401)
.+..+++|||||||||++||||+|||++|.+ .+||+|||+||+++|++||+.|++ .+++ +|.+++|++||
T Consensus 21 ~g~~~i~GvDEAGRGplaGPvV~AAVil~~~-------~~Gl~DSKkLs~~kRe~L~~~I~~--~a~~-~v~~~sp~eID 90 (250)
T 2etj_A 21 KEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE-------IEGINDSKQLSPAKRERLLDEIME--KAAV-GIGIASPEEID 90 (250)
T ss_dssp TTSSSEEEEEEECTTCSBSCEEEEEEEECSC-------CC----------CHHHHHHHHHHH--HEEE-EEEEECHHHHH
T ss_pred CCCceEEEecCCCCCCchhhheEEEEEEcCC-------ccCCCccccCCHHHHHHHHHHHHH--hhCC-eEEEECHHHHC
Confidence 4678899999999999999999999999975 479999999999999999999995 5667 99999999999
Q ss_pred HHhHhHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCCCccchhhhhhhccCcceEEEeecCCCCCcccccccccc
Q psy12553 117 NSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASK 196 (401)
Q Consensus 117 ~~ml~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g~p~~Y~~~L~~~fp~i~i~v~~KADs~y~v~~~~~~~k 196 (401)
+. |+|+.+..++.++| .+++++++.|+||+++.| + .++.+.++|||++
T Consensus 91 ~~-------NI~~at~~Am~rAi---~~L~~~p~~vlVDg~~~~--l---------~~~~~~ivKgD~~----------- 138 (250)
T 2etj_A 91 LY-------NIFNATKLAMNRAL---ENLSVKPSFVLVDGKGIE--L---------SVPGTCLVKGDQK----------- 138 (250)
T ss_dssp HH-------CHHHHHHHHHHHHH---HHSSSCCSEEEEESSSCC--C---------SSCEEEETTHHHH-----------
T ss_pred HH-------hHHHHHHHHHHHHH---HhcCCCCCEEEECCCCCC--C---------CCceEEEeccccc-----------
Confidence 73 56554443333333 235778999999999876 2 1335566888888
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCC----CCCCCCHHHHHHHHhcCCCCcccccccccCchhHHH
Q psy12553 197 ADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWG----SGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASK 272 (401)
Q Consensus 197 gD~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yG----sGYPSDp~Tk~~L~~~i~~~fG~p~~hR~SW~tvk~ 272 (401)
||+||||||||||+||++|++| ++.||+|| ||||+ +.|++||++ ||++++||+||+|+++
T Consensus 139 ----~~sVAAASIlAKV~RD~~M~~l------~~~yp~Ygf~~~kGY~T-~~h~~al~~-----~G~~~~HR~Sf~~v~~ 202 (250)
T 2etj_A 139 ----SKLIGAASIVAKVFRDRLMSEF------HRMYPQFSFHKHKGYAT-KEHLNEIRK-----NGVLPIHRLSFEPVLE 202 (250)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH------HHHCTTSCHHHHTTCCC-HHHHHHHHH-----HCCCTTBCTTSHHHHT
T ss_pred ----chhHHHHHHHHHHHHHHHHHHH------HHHCcccCCcCCCcCCc-HHHHHHHHH-----cCcCCeEECCcHHHHH
Confidence 9999999999999999999986 67899999 99998 889999886 7999999999999999
Q ss_pred HhhccCceeeeccCCc
Q psy12553 273 ILKEKAVLVEGDEIDD 288 (401)
Q Consensus 273 il~~~~~~v~w~~~~~ 288 (401)
+++.+ +.+.|.++++
T Consensus 203 ~l~~~-~~~~w~~~~~ 217 (250)
T 2etj_A 203 LLTDD-LLREFFEKGL 217 (250)
T ss_dssp TCCHH-HHHHHHHTTS
T ss_pred HHhhc-cccccCCCcc
Confidence 99655 7899976644
No 7
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=100.00 E-value=9.3e-47 Score=371.54 Aligned_cols=205 Identities=22% Similarity=0.280 Sum_probs=165.1
Q ss_pred CCCcEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhHHH
Q psy12553 38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICN 117 (401)
Q Consensus 38 ~~~~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eId~ 117 (401)
+..+++|||||||||+|||||||||++|.+.. ..|+.+||+|||+||+++|++|++.|++ . ++|+|.+++|++||+
T Consensus 89 ~~~~i~GvDEaGRGplaGPvV~aavil~~~~~-~~l~~~gl~DSKkLs~~kRe~L~~~I~~--~-~~~~v~~~s~~eId~ 164 (310)
T 2d0b_A 89 GSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHI-AKIAALGVKDSKQLNDEAIKRIAPAIME--T-VPHAVTVLDNPQYNR 164 (310)
T ss_dssp TTSCEEEEEEECTTCSBSCEEEEEEEECGGGH-HHHHHTCCTTGGGCCHHHHHHHHHHHHH--H-SCEEEEEECHHHHHH
T ss_pred CCceEEeecCCCCCCchhhhEEEEEEEchhhh-hhhhhcCCCcCCcCCHHHHHHHHHHHHH--h-cCeEEEEECHHHHhH
Confidence 45689999999999999999999999998765 6677899999999999999999999996 2 489999999999998
Q ss_pred HhHh-HhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCCCccchhhhhhh--ccCcceEEEeecCCCCCcccccccc
Q psy12553 118 SMLR-RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSE--IFPELIITVASKADSTYPVVGAAIA 194 (401)
Q Consensus 118 ~ml~-~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g~p~~Y~~~L~~--~fp~i~i~v~~KADs~y~v~~~~~~ 194 (401)
.+-. -+..|++.++|+.++..+.+.+. ++.++.|+||+++.|+.|+.+|+. .++.+++++++|||++
T Consensus 165 l~a~~i~~~~l~~~~~~~ai~~~i~~L~-~~~p~~vliD~~~~~~~~~~~L~~~~~~~~~~~~~~~KgD~~--------- 234 (310)
T 2d0b_A 165 WQRSGMPQTKMKALLHNRTLVKLVDAIA-PAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESV--------- 234 (310)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGT---------
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHhcc-cCCCCEEEECCCCChHHHHHHHhhccccCCCceEEEeccccc---------
Confidence 5210 02346677777777643333333 588999999999999999999975 4566778888999999
Q ss_pred ccCCCccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCC------CCCCCCHHHHHHHHhcCCCCcccc---ccccc
Q psy12553 195 SKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWG------SGYPGDPVTKKFLSENIDPVFGFP---QLVRF 265 (401)
Q Consensus 195 ~kgD~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yG------sGYPSDp~Tk~~L~~~i~~~fG~p---~~hR~ 265 (401)
||+|||||||| ||++|+.| +..+|+|| .|||+|+.|++||+++ |++ .++|+
T Consensus 235 ------~~~VAAASIlA---RD~~m~~l------~~~~p~Yg~~~~kGygt~~h~~a~~~L~~~-----G~~~l~~~~R~ 294 (310)
T 2d0b_A 235 ------HVSVAAASIIA---RYVFLEEM------EQLSRAVGLLLPKGAGAIVDEAAARIIRAR-----GEEMLETCAKL 294 (310)
T ss_dssp ------CHHHHHHHHHH---HHHHHHHH------HHHHHHHTSCCCSSSSHHHHHHHHHHHHHH-----CGGGHHHHBCT
T ss_pred ------cHHHHHHHHHH---HHHHHHHH------HHhCcccCCCCCcCCCCHHHHHHHHHHHHh-----CCCccchhhee
Confidence 99999999999 99999987 34455554 4555577777788874 555 56779
Q ss_pred CchhHHHHhhc
Q psy12553 266 SWSTASKILKE 276 (401)
Q Consensus 266 SW~tvk~il~~ 276 (401)
||+|++++++.
T Consensus 295 sf~t~~~~~~~ 305 (310)
T 2d0b_A 295 HFANTKKALAI 305 (310)
T ss_dssp TSTHHHHHHHH
T ss_pred cCHhHHHHHHH
Confidence 99999998863
No 8
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=100.00 E-value=2e-43 Score=340.07 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=141.0
Q ss_pred eeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhHHHHhHhHh
Q psy12553 44 GIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQ 123 (401)
Q Consensus 44 GIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eId~~ml~~~ 123 (401)
|||||||||++||||+|||++|.+.. ..|+.+||+|||+||+++|++|++.|++ . ++|+|.+++|++||+.|. .
T Consensus 75 GvDEaGRGplaGPvv~aavil~~~~~-~~L~~~gv~DSKkLs~~kRe~L~~~I~~--~-~~~~v~~~s~~eID~~~~--~ 148 (257)
T 3vn5_A 75 GCDESGKGDIFGSLVLCCVCIPEENY-LKVSSLNPRDTKRLSDKRVERLYLALKP--L-VKAYCYEIKPEEYNKLYR--K 148 (257)
T ss_dssp EEEEESTTCSBSCEEEEEEECCGGGH-HHHHHTCTTCCTTTCHHHHHHHHHHHGG--G-SEEEEEEECHHHHHHHHH--H
T ss_pred CccCCCCCCcccccEEEEEEEchhhh-hhHhhcCCCccccCCHHHHHHHHHHHHH--h-cCEEEEEECHHHHhhhcc--c
Confidence 99999999999999999999998876 6778899999999999999999999995 3 889999999999999763 4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCCCccchhhhhhhccCcceEEEeecCCCCCccccccccccCCCccch
Q psy12553 124 KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPV 203 (401)
Q Consensus 124 ~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g~p~~Y~~~L~~~fp~i~i~v~~KADs~y~v~~~~~~~kgD~~yp~ 203 (401)
.+|+|.+...++.++|..+... ..++.|+||+++.+. | | + .++++++| ||+ |++
T Consensus 149 ~~Nin~~~~~am~~Ai~~L~~~-~~~~~vlvD~~~~~~-~---l----~-~~~~~~~K---------------gD~-~~s 202 (257)
T 3vn5_A 149 FRNLNKMMTHFYKLLIERVKEE-CGVSEVVVDKYQPSN-P---F----G-EDVIFETE---------------AER-NLA 202 (257)
T ss_dssp HSSHHHHHHHHHHHHHHHHHHH-HTCSCEEECCCSSSC-C---S----C-TTEEECBT---------------TBC-CHH
T ss_pred cccHHHHHHHHHHHHHHHhhcc-CCCCEEEECCCCCcc-c---C----C-CCeEEEEc---------------cch-hHH
Confidence 5799988666666666554332 226789999998654 1 1 1 23444445 555 799
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCC----CCCCCCHHHHHHHHhcCCCCcccccccccCch
Q psy12553 204 VGAASICAKVSRDSALKSWTFQEGIQIENNAWG----SGYPGDPVTKKFLSENIDPVFGFPQLVRFSWS 268 (401)
Q Consensus 204 VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yG----sGYPSDp~Tk~~L~~~i~~~fG~p~~hR~SW~ 268 (401)
|||||||| ||++|+.+ ++.+|+|| +||| |+.|+++. +.+|++++||.||.
T Consensus 203 VAAASIlA---Rd~~m~~l------~~~~p~Ygf~~~kGYg----T~~H~~Al--~~~G~~~~~rl~f~ 256 (257)
T 3vn5_A 203 VAVASIFA---RYKFLQSL------KEVERELGIKIPKGTS----KEVKELAK--SLKNPERFIKLNFN 256 (257)
T ss_dssp HHHHHHHH---HHHHHHHH------HHHHHHHCSCCCCSCC----HHHHHHHH--TCSSGGGTBCGGGC
T ss_pred HHHHHHHH---HHHHHHHH------HHhCccCCCcCCCCCC----cHHHHHHH--HHHCCCHHHHhccC
Confidence 99999999 66666654 34445444 9999 68888875 56899999999994
No 9
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=41.21 E-value=6.9 Score=24.78 Aligned_cols=7 Identities=57% Similarity=1.374 Sum_probs=5.5
Q ss_pred CCCccce
Q psy12553 51 GPVLGPM 57 (401)
Q Consensus 51 Gpv~GPm 57 (401)
||++|||
T Consensus 1 gpyagpl 7 (26)
T 2f8e_A 1 GPYAGPL 7 (26)
T ss_pred CCcCCch
Confidence 7888876
No 10
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=27.88 E-value=25 Score=34.91 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.7
Q ss_pred CCCCCCCCHHHHHHHHhc
Q psy12553 235 WGSGYPGDPVTKKFLSEN 252 (401)
Q Consensus 235 yGsGYPSDp~Tk~~L~~~ 252 (401)
+|+||| |..|++||+..
T Consensus 225 t~kG~P-d~atR~~L~~L 241 (369)
T 2q2e_A 225 HLKGQP-ARSTRRIIKRM 241 (369)
T ss_dssp ECCSSC-CHHHHHHHHHH
T ss_pred ECCCCC-CHHHHHHHHHH
Confidence 589999 79999999963
No 11
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=24.01 E-value=29 Score=33.45 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=15.0
Q ss_pred CCCCCCCCCHHHHHHHHh
Q psy12553 234 AWGSGYPGDPVTKKFLSE 251 (401)
Q Consensus 234 ~yGsGYPSDp~Tk~~L~~ 251 (401)
-+|+||| |..|+++|+.
T Consensus 151 It~kGyP-d~aTR~fl~~ 167 (301)
T 1d3y_A 151 VSLKGVP-ARATRRFIKR 167 (301)
T ss_dssp EECCSSC-CHHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHH
Confidence 3589999 7999999987
No 12
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=20.60 E-value=27 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.2
Q ss_pred chhhhhhHHHHHHHHHHHhh
Q psy12553 202 PVVGAASICAKVSRDSALKS 221 (401)
Q Consensus 202 p~VAAASIvAKVtRD~~m~~ 221 (401)
-+||.|||+-|.-||.+++.
T Consensus 10 eIia~aSiLIKfg~ddIle~ 29 (90)
T 1jr5_A 10 EIITVASILIKFSREDIVEN 29 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHTC
T ss_pred HHHHHHHHHHHcChHHHHHh
Confidence 47999999999999999986
Done!