AmiGO: BLAST Results


BLAST match view associations BLAST with CG13690 CG13690 CG13690	protein from Drosophila melanogaster	3.8e-78
BLAST match view associations BLAST with rnaseh2a rnaseh2a rnaseh2a ribonuclease H2, subunit A	gene_product from Danio rerio	1.0e-68
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Bos taurus	7.6e-64
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Canis lupus familiaris	4.2e-63
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Sus scrofa	1.1e-62
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, large subunit	protein from Mus musculus	2.3e-62
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, subunit A	gene from Rattus norvegicus	7.9e-62
BLAST match view associations BLAST with rnh-2 rnh-2 rnh-2	gene from Caenorhabditis elegans	1.9e-58
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w ribonuclease H1 large subunit, putative	gene from Plasmodium falciparum	5.3e-56
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w Ribonuclease	protein from Plasmodium falciparum 3D7	5.3e-56
BLAST match view associations BLAST with rnaseh2A rnaseh2A rnaseh2A ribonuclease H2 subunit A	gene from Dictyostelium discoideum	2.0e-49
BLAST match view associations BLAST with RNH35 RNH35 RNH35	gene_product from Candida albicans	6.9e-47
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Homo sapiens	1.8e-46
BLAST match view associations BLAST with MGG_06959 MGG_06959 MGG_06959 Ribonuclease	protein from Magnaporthe oryzae 70-15	2.5e-42
BLAST match view associations BLAST with AT2G25100 AT2G25100 AT2G25100	protein from Arabidopsis thaliana	1.7e-41
BLAST match view associations BLAST with RNH201 RNH201 RNH201 Ribonuclease H2 catalytic subunit	gene from Saccharomyces cerevisiae	1.5e-35
BLAST match view associations BLAST with DDB_G0277705 DDB_G0277705 DDB_G0277705	gene from Dictyostelium discoideum	7.3e-08
BLAST match view associations BLAST with SO_1643 SO_1643 SO_1643 ribonuclease HII	protein from Shewanella oneidensis MR-1	2.3e-07
BLAST match view associations BLAST with CPS_1569 CPS_1569 CPS_1569 ribonuclease HII	protein from Colwellia psychrerythraea 34H	1.1e-06
BLAST match view associations BLAST with APH_1022 APH_1022 APH_1022 ribonuclease HII	protein from Anaplasma phagocytophilum str. HZ	5.5e-06
BLAST match view associations BLAST with CJE_0009 CJE_0009 CJE_0009 ribonuclease HII	protein from Campylobacter jejuni RM1221	6.1e-06
BLAST match view associations BLAST with rnhB rnhB rnhB RNAse HII, degrades RNA of DNA-RNA hybrids	protein from Escherichia coli K-12	8.1e-06
BLAST match view associations BLAST with rnhB rnhB rnhB Ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.2e-05
BLAST match view associations BLAST with VC_2246 VC_2246 VC_2246 ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor	5.2e-05
BLAST match view associations BLAST with ECH_0946 ECH_0946 ECH_0946 ribonuclease HII	protein from Ehrlichia chaffeensis str. Arkansas	0.00017
BLAST match view associations BLAST with CBU_1339 CBU_1339 CBU_1339 ribonuclease HII	protein from Coxiella burnetii RSA 493	0.00035
BLAST match view associations BLAST with CHY_1426 CHY_1426 CHY_1426 ribonuclease HII	protein from Carboxydothermus hydrogenoformans Z-2901	0.00058
BLAST match view associations BLAST with GSU_0649 GSU_0649 GSU_0649 ribonuclease HII	protein from Geobacter sulfurreducens PCA	0.00069
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy12553
        (401 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0031252 - symbol:CG13690 species:7227 "Drosophila ...   786  3.8e-78   1
ZFIN|ZDB-GENE-040426-976 - symbol:rnaseh2a "ribonuclease ...   697  1.0e-68   1
UNIPROTKB|Q2TBT5 - symbol:RNASEH2A "Ribonuclease H2 subun...   651  7.6e-64   1
UNIPROTKB|E2RQK5 - symbol:RNASEH2A "Ribonuclease" species...   644  4.2e-63   1
UNIPROTKB|F1SDX8 - symbol:RNASEH2A "Ribonuclease" species...   640  1.1e-62   1
MGI|MGI:1916974 - symbol:Rnaseh2a "ribonuclease H2, large...   637  2.3e-62   1
RGD|1307248 - symbol:Rnaseh2a "ribonuclease H2, subunit A...   632  7.9e-62   1
UNIPROTKB|Q5U209 - symbol:Rnaseh2a "Ribonuclease H2 subun...   632  7.9e-62   1
WB|WBGene00004383 - symbol:rnh-2 species:6239 "Caenorhabd...   600  1.9e-58   1
GENEDB_PFALCIPARUM|PFF1150w - symbol:PFF1150w "ribonuclea...   577  5.3e-56   1
UNIPROTKB|C6KT75 - symbol:PFF1150w "Ribonuclease" species...   577  5.3e-56   1
DICTYBASE|DDB_G0292584 - symbol:rnaseh2A "ribonuclease H2...   515  2.0e-49   1
CGD|CAL0003240 - symbol:RNH35 species:5476 "Candida albic...   491  6.9e-47   1
UNIPROTKB|O75792 - symbol:RNASEH2A "Ribonuclease H2 subun...   487  1.8e-46   1
UNIPROTKB|G4MNH9 - symbol:MGG_06959 "Ribonuclease" specie...   448  2.5e-42   1
TAIR|locus:2040189 - symbol:AT2G25100 species:3702 "Arabi...   440  1.7e-41   1
ASPGD|ASPL0000033104 - symbol:AN5114 species:162425 "Emer...   430  2.0e-40   1
POMBASE|SPAC4G9.02 - symbol:rnh201 "ribonuclease H2 compl...   420  2.3e-39   1
SGD|S000005016 - symbol:RNH201 "Ribonuclease H2 catalytic...   384  1.5e-35   1
DICTYBASE|DDB_G0277705 - symbol:DDB_G0277705 species:4468...   153  7.3e-08   1
TIGR_CMR|SO_1643 - symbol:SO_1643 "ribonuclease HII" spec...   121  2.3e-07   2
TIGR_CMR|CPS_1569 - symbol:CPS_1569 "ribonuclease HII" sp...   116  1.1e-06   2
TIGR_CMR|APH_1022 - symbol:APH_1022 "ribonuclease HII" sp...   117  5.5e-06   2
TIGR_CMR|CJE_0009 - symbol:CJE_0009 "ribonuclease HII" sp...   107  6.1e-06   2
UNIPROTKB|P10442 - symbol:rnhB "RNAse HII,  degrades RNA ...    94  8.1e-06   2
UNIPROTKB|P52021 - symbol:rnhB "Ribonuclease HII" species...    99  5.2e-05   2
TIGR_CMR|VC_2246 - symbol:VC_2246 "ribonuclease HII" spec...    99  5.2e-05   2
TIGR_CMR|ECH_0946 - symbol:ECH_0946 "ribonuclease HII" sp...   105  0.00017   2
TIGR_CMR|CBU_1339 - symbol:CBU_1339 "ribonuclease HII" sp...   112  0.00035   1
TIGR_CMR|CHY_1426 - symbol:CHY_1426 "ribonuclease HII" sp...   100  0.00058   2
TIGR_CMR|GSU_0649 - symbol:GSU_0649 "ribonuclease HII" sp...    94  0.00069   2


>FB|FBgn0031252 [details] [associations]
            symbol:CG13690 species:7227 "Drosophila melanogaster"
            [GO:0004523 "ribonuclease H activity" evidence=ISS;NAS] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 EMBL:AE014134
            GO:GO:0046872 GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098
            GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 OMA:IAEVYVD
            EMBL:BT023255 RefSeq:NP_608521.1 UniGene:Dm.30792
            ProteinModelPortal:Q9VPP5 SMR:Q9VPP5 STRING:Q9VPP5 PaxDb:Q9VPP5
            PRIDE:Q9VPP5 EnsemblMetazoa:FBtr0078090 GeneID:33213
            KEGG:dme:Dmel_CG13690 UCSC:CG13690-RA FlyBase:FBgn0031252
            InParanoid:Q9VPP5 OrthoDB:EOG4PC87Q PhylomeDB:Q9VPP5
            GenomeRNAi:33213 NextBio:782466 Bgee:Q9VPP5 GermOnline:CG13690
            Uniprot:Q9VPP5
        Length = 347

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 161/265 (60%), Positives = 196/265 (73%)

Query:    17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
             I   +NSRN +  S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L ++L
Sbjct:    47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNKAL-EDL 105

Query:    77 GCADSKALTEKKRDDILDSI-CKENAW--LGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
             GCADSK LTE KRD I + I  KE A   +GW VEIISPN I  SM RR K SLNEVS D
Sbjct:   106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165

Query:   134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
             +A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP   ITVA KADSTYP+V AA 
Sbjct:   166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAA- 224

Query:   194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
                           SICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct:   225 --------------SICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270

Query:   254 DPVFGFPQLVRFSWSTASKILKEKA 278
             D VFGFP+LVRFSWSTA   L +KA
Sbjct:   271 DLVFGFPRLVRFSWSTAENALADKA 295


>ZFIN|ZDB-GENE-040426-976 [details] [associations]
            symbol:rnaseh2a "ribonuclease H2, subunit A"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
            process" evidence=IEA] [GO:0004518 "nuclease activity"
            evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            Pfam:PF01351 ZFIN:ZDB-GENE-040426-976 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            HOVERGEN:HBG023585 EMBL:BC046061 IPI:IPI00493246 UniGene:Dr.14704
            HSSP:Q57599 ProteinModelPortal:Q7ZUZ9 STRING:Q7ZUZ9 PRIDE:Q7ZUZ9
            InParanoid:Q7ZUZ9 ArrayExpress:Q7ZUZ9 Bgee:Q7ZUZ9 Uniprot:Q7ZUZ9
        Length = 307

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 145/308 (47%), Positives = 199/308 (64%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DNS +  +SS+IP+ CK++ C LGIDEAGRGPVLGPMVYG  +CP    E+L KNL  AD
Sbjct:     9 DNSVSCRLSSSIPDVCKTEDCCLGIDEAGRGPVLGPMVYGICFCPVSRKEDL-KNLKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK LTE +R+++   + +  +++GW ++I+SPN+I  SML+R KY+LN +SHDAAIGL++
Sbjct:    68 SKTLTEAERENLFVKLDEAKSFVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQ 127

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
               + +GV ++EV+VDTVGP E Y+ KLS+ FP + +TV        P        KADS 
Sbjct:   128 YALDSGVQLKEVFVDTVGPAEKYQDKLSQRFPGVEVTVR-------P--------KADSL 172

Query:   201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
             +P+V AASICAKV+RD A+KSW F E +   +  +GSGYP DP TK +L + +DPVFG+P
Sbjct:   173 FPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYP 232

Query:   261 QLVRFSWSTASKILKEKAVLVX-XXXXXXXXXXXXNKKTRSIRNFFKPKADENVESPVVE 319
             Q VRFSWSTA  +L  KAV V               +   S+ ++F    ++  E     
Sbjct:   233 QFVRFSWSTAQTLLDSKAVTVHWDDDEEDGEKAAARQNNTSVLSYFS--RNKPSELTHTR 290

Query:   320 ERHAFFKE 327
             + H FF E
Sbjct:   291 DTHRFFTE 298


>UNIPROTKB|Q2TBT5 [details] [associations]
            symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9913
            "Bos taurus" [GO:0032299 "ribonuclease H2 complex" evidence=ISS]
            [GO:0004523 "ribonuclease H activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            Pfam:PF01351 GO:GO:0005634 GO:GO:0046872 GO:GO:0003723
            GO:GO:0006401 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
            HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            EMBL:BC109682 IPI:IPI00706063 RefSeq:NP_001033623.1
            UniGene:Bt.44367 ProteinModelPortal:Q2TBT5 STRING:Q2TBT5
            PRIDE:Q2TBT5 Ensembl:ENSBTAT00000012731 GeneID:512830
            KEGG:bta:512830 CTD:10535 GeneTree:ENSGT00390000010768
            HOVERGEN:HBG023585 InParanoid:Q2TBT5 OrthoDB:EOG4PNXHM
            NextBio:20870572 GO:GO:0032299 Uniprot:Q2TBT5
        Length = 299

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 130/258 (50%), Positives = 177/258 (68%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DN+    +SS +P  C  +PCVLG+DEAGRGPVLGPMVY   YCP    E+L + L  AD
Sbjct:     9 DNTGRCRLSSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDL-EALKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK L+E +RD +   + ++  ++GW ++++SPN+I  SML R KY+LN +SHD A GL++
Sbjct:    68 SKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQ 127

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
               +  GVNV +V+VDTVG PE+Y+++L + FP + +TV  KA             KAD+ 
Sbjct:   128 FALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEVTV--KA-------------KADAL 172

Query:   201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
             YPVV AASICAKV+RD A+K+W F E +Q  +  +GSGYP DP TK +L +++DPVFGFP
Sbjct:   173 YPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFP 232

Query:   261 QLVRFSWSTASKILKEKA 278
             Q VRFSW TA  IL+ +A
Sbjct:   233 QFVRFSWRTAQSILESEA 250


>UNIPROTKB|E2RQK5 [details] [associations]
            symbol:RNASEH2A "Ribonuclease" species:9615 "Canis lupus
            familiaris" [GO:0032299 "ribonuclease H2 complex" evidence=IEA]
            [GO:0006401 "RNA catabolic process" evidence=IEA] [GO:0004523
            "ribonuclease H activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723
            GO:GO:0006401 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743
            OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 GO:GO:0032299
            EMBL:AAEX03012405 RefSeq:XP_003639769.1 ProteinModelPortal:E2RQK5
            Ensembl:ENSCAFT00000027175 GeneID:100856442 KEGG:cfa:100856442
            NextBio:20858991 Uniprot:E2RQK5
        Length = 299

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 129/258 (50%), Positives = 177/258 (68%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DN+    +SS +P  C+ +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  AD
Sbjct:     9 DNTGRCRLSSPVPAVCRQEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLGDL-EALKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK L+E +RD +   + K+  ++GW ++++SPN+I  SML R KY+LN +SHD A GL++
Sbjct:    68 SKTLSESERDRLFVKMEKDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQ 127

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
               +  GV V +V+VDTVG PE+Y+++L + FP + +TV  KA             KAD+ 
Sbjct:   128 YALDQGVKVAQVFVDTVGLPETYQERLQQRFPGIEVTV--KA-------------KADAL 172

Query:   201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
             YPVV AASICAKV+RD A+KSW F E +Q  +  +GSGYP DP TK +L ++++PVFGFP
Sbjct:   173 YPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYGSGYPNDPKTKAWLRKHVEPVFGFP 232

Query:   261 QLVRFSWSTASKILKEKA 278
             Q VRFSW TA  IL+++A
Sbjct:   233 QFVRFSWRTAQSILEKEA 250


>UNIPROTKB|F1SDX8 [details] [associations]
            symbol:RNASEH2A "Ribonuclease" species:9823 "Sus scrofa"
            [GO:0032299 "ribonuclease H2 complex" evidence=IEA] [GO:0006401
            "RNA catabolic process" evidence=IEA] [GO:0004523 "ribonuclease H
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743 OMA:WRTAQTI
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
            GO:GO:0032299 EMBL:CU914382 RefSeq:NP_001231373.1 UniGene:Ssc.19088
            Ensembl:ENSSSCT00000015011 GeneID:100523170 KEGG:ssc:100523170
            Uniprot:F1SDX8
        Length = 301

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 126/258 (48%), Positives = 177/258 (68%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DN+    ++S +P  C  +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  AD
Sbjct:     9 DNTGRCRLNSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK L+E +RD +   + ++  ++GW ++++SPN+I  SML R KY+LN +SHD A GL++
Sbjct:    68 SKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQ 127

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
               +  GV V +V+VDTVG PE+Y+++L + FP++ +TV  KA             KAD+ 
Sbjct:   128 YALDQGVKVAQVFVDTVGLPETYQERLQQRFPDIEVTV--KA-------------KADAL 172

Query:   201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
             YPVV AASICAKV+RD A+++W F E +Q  +  +GSGYP DP TK +L +++DPVFGFP
Sbjct:   173 YPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFP 232

Query:   261 QLVRFSWSTASKILKEKA 278
             Q VRFSW TA  IL+++A
Sbjct:   233 QFVRFSWRTAQSILEKEA 250


>MGI|MGI:1916974 [details] [associations]
            symbol:Rnaseh2a "ribonuclease H2, large subunit"
            species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
            "nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
            activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA
            catabolic process" evidence=ISO] [GO:0016070 "RNA metabolic
            process" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
            evidence=ISO;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 MGI:MGI:1916974 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
            HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:AK010292
            EMBL:AK146518 EMBL:BC038158 IPI:IPI00229787 RefSeq:NP_081463.1
            UniGene:Mm.182470 PDB:3KIO PDB:3P5J PDBsum:3KIO PDBsum:3P5J
            ProteinModelPortal:Q9CWY8 SMR:Q9CWY8 STRING:Q9CWY8
            PhosphoSite:Q9CWY8 PaxDb:Q9CWY8 PRIDE:Q9CWY8 DNASU:69724
            Ensembl:ENSMUST00000109736 Ensembl:ENSMUST00000109738
            Ensembl:ENSMUST00000147812 GeneID:69724 KEGG:mmu:69724
            UCSC:uc009mok.1 InParanoid:Q9CWY8 ChiTaRS:RNASEH2A
            EvolutionaryTrace:Q9CWY8 NextBio:330190 Bgee:Q9CWY8
            CleanEx:MM_RNASEH2A Genevestigator:Q9CWY8
            GermOnline:ENSMUSG00000052926 Uniprot:Q9CWY8
        Length = 301

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 129/258 (50%), Positives = 176/258 (68%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DN+    +SS +P  C  +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  AD
Sbjct:     9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK LTE +R+ +   + ++  ++GW ++++SPN+I  SML R KY+LN +SHD A GLI+
Sbjct:    68 SKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQ 127

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
               +   VNV +V+VDTVG PE+Y+ +L + FP + +TV  KA             KADS 
Sbjct:   128 YALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTV--KA-------------KADSL 172

Query:   201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
             +PVV AASI AKV+RD A+K+W F E +Q  ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct:   173 FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232

Query:   261 QLVRFSWSTASKILKEKA 278
             Q VRFSWSTA  IL+++A
Sbjct:   233 QFVRFSWSTAQAILEKEA 250


>RGD|1307248 [details] [associations]
            symbol:Rnaseh2a "ribonuclease H2, subunit A" species:10116
            "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004523 "ribonuclease H activity" evidence=IEA;ISO;ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA catabolic
            process" evidence=ISO;ISS] [GO:0016070 "RNA metabolic process"
            evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
            evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
            GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
            RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
            STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
            ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
        Length = 301

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 129/258 (50%), Positives = 175/258 (67%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DN+    +SS +P  C  +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  AD
Sbjct:     9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK LTE +R+ +   + ++  ++GW ++I+SPN+I  SML R KY+LN +SHD A GLI+
Sbjct:    68 SKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQ 127

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
               +   V V +V+VDTVG PE+Y+ +L + FP + +TV  KA             KADS 
Sbjct:   128 HAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTV--KA-------------KADSL 172

Query:   201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
             +PVV AASI AKV+RD A+K+W F E +Q  ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct:   173 FPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232

Query:   261 QLVRFSWSTASKILKEKA 278
             Q VRFSWSTA  IL+++A
Sbjct:   233 QFVRFSWSTAQAILEKEA 250


>UNIPROTKB|Q5U209 [details] [associations]
            symbol:Rnaseh2a "Ribonuclease H2 subunit A" species:10116
            "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
            GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
            RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
            STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
            ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
        Length = 301

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 129/258 (50%), Positives = 175/258 (67%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DN+    +SS +P  C  +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  AD
Sbjct:     9 DNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK LTE +R+ +   + ++  ++GW ++I+SPN+I  SML R KY+LN +SHD A GLI+
Sbjct:    68 SKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQ 127

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADST 200
               +   V V +V+VDTVG PE+Y+ +L + FP + +TV  KA             KADS 
Sbjct:   128 HAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTV--KA-------------KADSL 172

Query:   201 YPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFP 260
             +PVV AASI AKV+RD A+K+W F E +Q  ++ +GSGYP DP TK +L +++DPVFGFP
Sbjct:   173 FPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFP 232

Query:   261 QLVRFSWSTASKILKEKA 278
             Q VRFSWSTA  IL+++A
Sbjct:   233 QFVRFSWSTAQAILEKEA 250


>WB|WBGene00004383 [details] [associations]
            symbol:rnh-2 species:6239 "Caenorhabditis elegans"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H
            activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0046872
            GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 EMBL:AF181619
            EMBL:Z66524 RefSeq:NP_495796.1 UniGene:Cel.19550
            ProteinModelPortal:Q9U6P6 SMR:Q9U6P6 STRING:Q9U6P6 PaxDb:Q9U6P6
            EnsemblMetazoa:T13H5.7 GeneID:266861 KEGG:cel:CELE_T13H5.7
            UCSC:T13H5.7 CTD:266861 WormBase:T13H5.7 InParanoid:Q9U6P6
            OMA:IAEVYVD NextBio:953296 Uniprot:Q9U6P6
        Length = 297

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 129/244 (52%), Positives = 166/244 (68%)

Query:    40 PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKE 99
             PCVLGIDEAGRGPVLGPMVY  A  P D N EL KNLG  DSKAL E KR++I + + ++
Sbjct:    21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVEL-KNLGVDDSKALNEAKREEIFNKMNED 79

Query:   100 N---AWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDT 156
                   + + +  +SP +I  SML+RQKYSLNEVSH+AAI LIR  +A  VNV E+ VDT
Sbjct:    80 EDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDT 139

Query:   157 VGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRD 216
             VGP  +Y+ KL ++FP + I V  KADS +P+V AA               SI AKV+RD
Sbjct:   140 VGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAA---------------SIAAKVTRD 184

Query:   217 SALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
             S L++W F+E  I++ +  +GSGYPGDP TKKFL  +++PVFGF  LVR SW TAS I++
Sbjct:   185 SRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVE 244

Query:   276 EKAV 279
             ++ V
Sbjct:   245 KRCV 248

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 64/163 (39%), Positives = 99/163 (60%)

Query:   166 KLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQ 225
             K+  + P+   T  +K +  +P +   +  KADS +P+V AASI AKV+RDS L++W F+
Sbjct:   136 KVDTVGPKA--TYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFR 193

Query:   226 E-GIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVXXX 284
             E  I++ +  +GSGYPGDP TKKFL  +++PVFGF  LVR SW TAS I++++ V     
Sbjct:   194 EKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCV----P 249

Query:   285 XXXXXXXXXXNKKTRSIRNFFKPKADENVESPVVEERHAFFKE 327
                         +++ + ++  PK   N E+ VV +R+ +FKE
Sbjct:   250 GSWEDDEEEGKSQSKRMTSWMVPK---N-ETEVVPKRNVYFKE 288


>GENEDB_PFALCIPARUM|PFF1150w [details] [associations]
            symbol:PFF1150w "ribonuclease H1 large subunit,
            putative" species:5833 "Plasmodium falciparum" [GO:0006401 "RNA
            catabolic process" evidence=ISS] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            Pfam:PF01351 GO:GO:0003723 GO:GO:0006401 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505 HOGENOM:HOG000100290
            KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
            PANTHER:PTHR10954 TIGRFAMs:TIGR00729 RefSeq:XP_966221.1
            ProteinModelPortal:C6KT75 EnsemblProtists:PFF1150w:mRNA
            GeneID:3885875 KEGG:pfa:PFF1150w EuPathDB:PlasmoDB:PF3D7_0623900
            ProtClustDB:CLSZ2514453 Uniprot:C6KT75
        Length = 288

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 121/233 (51%), Positives = 150/233 (64%)

Query:    43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
             LGIDEAGRGPVLGPMVY   YC K++ E+LLK +   DSK +TE  R+ +   +      
Sbjct:    19 LGIDEAGRGPVLGPMVYSGFYCNKEH-EKLLKEMKIDDSKKITEADREKMFVKLNNSKLP 77

Query:   103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
              GW V I+ P  I   ML++QKY+LNE+SHD AI +I  VI  G N+ EV+VDTVG    
Sbjct:    78 FGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKASV 137

Query:   163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
             Y++KL ++FP +  TV  KADS YPVV AA               SICAKV+RD  LK W
Sbjct:   138 YEEKLQKMFPHIKCTVKEKADSLYPVVSAA---------------SICAKVTRDFLLKKW 182

Query:   223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
              ++E I   +N +GSGYPGDPVTK FL  N D VFGFP +VRFSWSTA  +L+
Sbjct:   183 KYEEPIINIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLE 235


>UNIPROTKB|C6KT75 [details] [associations]
            symbol:PFF1150w "Ribonuclease" species:36329 "Plasmodium
            falciparum 3D7" [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505
            HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            RefSeq:XP_966221.1 ProteinModelPortal:C6KT75
            EnsemblProtists:PFF1150w:mRNA GeneID:3885875 KEGG:pfa:PFF1150w
            EuPathDB:PlasmoDB:PF3D7_0623900 ProtClustDB:CLSZ2514453
            Uniprot:C6KT75
        Length = 288

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 121/233 (51%), Positives = 150/233 (64%)

Query:    43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
             LGIDEAGRGPVLGPMVY   YC K++ E+LLK +   DSK +TE  R+ +   +      
Sbjct:    19 LGIDEAGRGPVLGPMVYSGFYCNKEH-EKLLKEMKIDDSKKITEADREKMFVKLNNSKLP 77

Query:   103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
              GW V I+ P  I   ML++QKY+LNE+SHD AI +I  VI  G N+ EV+VDTVG    
Sbjct:    78 FGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKASV 137

Query:   163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
             Y++KL ++FP +  TV  KADS YPVV AA               SICAKV+RD  LK W
Sbjct:   138 YEEKLQKMFPHIKCTVKEKADSLYPVVSAA---------------SICAKVTRDFLLKKW 182

Query:   223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILK 275
              ++E I   +N +GSGYPGDPVTK FL  N D VFGFP +VRFSWSTA  +L+
Sbjct:   183 KYEEPIINIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLE 235


>DICTYBASE|DDB_G0292584 [details] [associations]
            symbol:rnaseh2A "ribonuclease H2 subunit A"
            species:44689 "Dictyostelium discoideum" [GO:0016070 "RNA metabolic
            process" evidence=IEA;IC] [GO:0004523 "ribonuclease H activity"
            evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0032299
            "ribonuclease H2 complex" evidence=ISS] [GO:0090305 "nucleic acid
            phosphodiester bond hydrolysis" evidence=IEA] [GO:0046872 "metal
            ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            dictyBase:DDB_G0292584 Pfam:PF01351 GenomeReviews:CM000155_GR
            EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0003723 SUPFAM:SSF53098
            GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743 OMA:WRTAQTI
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GO:GO:0032299 RefSeq:XP_629507.1 HSSP:O59351
            ProteinModelPortal:Q54D13 STRING:Q54D13 EnsemblProtists:DDB0266383
            GeneID:8628758 KEGG:ddi:DDB_G0292584 Uniprot:Q54D13
        Length = 289

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 113/259 (43%), Positives = 161/259 (62%)

Query:    25 NLIISSTIPESC--KSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSK 82
             N II  T  +S   KS+P V+GIDEAGRGPV+GPMVYG  Y P   +  L K++   DSK
Sbjct:     3 NKIIYLTELDSSVDKSEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTL-KSMKFNDSK 61

Query:    83 ALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKV 142
              LTE++RD + D + + N  L +  ++I+  ++   ML ++  SLN +SH++AIGLIR V
Sbjct:    62 KLTEQQRDQLFDKMGESNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSV 121

Query:   143 IAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYP 202
             +  GVNV+E+Y+DTVGPP+ Y+  L ++FPE+   + SK              KADS YP
Sbjct:   122 LKKGVNVQELYLDTVGPPDKYQLMLKKLFPEIGKIIVSK--------------KADSLYP 167

Query:   203 VVGAASICAKVSRDSALKSWTFQ------EGIQIENNAWGSGYPGDPVTKKFLSENIDPV 256
             +V AASI AKV RD  + +  F       +  Q+  + +GSGYP DP++KK+L +N D V
Sbjct:   168 IVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQLSTD-FGSGYPSDPLSKKWLVKNRDKV 226

Query:   257 FGFPQLVRFSWSTASKILK 275
             FG+P  +RFSW T    ++
Sbjct:   227 FGYPNFIRFSWKTTETAMR 245


>CGD|CAL0003240 [details] [associations]
            symbol:RNH35 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
            evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
            [GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 CGD:CAL0003240 Pfam:PF01351 GO:GO:0003723
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
            EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:COG0164 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 RefSeq:XP_720885.1 RefSeq:XP_721398.1
            RefSeq:XP_888785.1 ProteinModelPortal:Q5AGX6 STRING:Q5AGX6
            GeneID:3636987 GeneID:3637501 GeneID:3704096 KEGG:cal:CaO19.13915
            KEGG:cal:CaO19.6562 KEGG:cal:CaO19_6562 Uniprot:Q5AGX6
        Length = 431

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 114/283 (40%), Positives = 170/283 (60%)

Query:     9 NVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDN 68
             +VT +E   +   ++ +  I  +I ++ K++P VLG+DEAGRGPVLGPMVYG AY  +  
Sbjct:   123 SVTNIEDPFKFASSTYHSEIPQSILQN-KTEPIVLGVDEAGRGPVLGPMVYGIAYSLESF 181

Query:    69 NEELLKNLGCADSKALTEKKRDDILDSI----CKENAWLGWMVEIISPNVICNSMLR--- 121
             + +L K  G ADSK LT+ KR+++   I     + +  +GW    ++   I + ML+   
Sbjct:   182 SSKLQKEYGFADSKVLTDVKREELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVN 241

Query:   122 -RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVAS 180
              +  Y+LNE +HD  I LI++V+A GV + +++VDTVGPP +Y+ KL   FPE+ +TV  
Sbjct:   242 GKGAYNLNEQAHDTTINLIKQVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTK 301

Query:   181 KADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYP 240
             KADS YP+V         ST      AS+ AKV+RD+ +K +     + ++    GSGYP
Sbjct:   302 KADSIYPIV---------ST------ASVVAKVTRDTNIKFYNENLPL-LQGQKLGSGYP 345

Query:   241 GDPVTKKFLSENIDPVFGFPQ-LVRFSWSTAS-KILKEKAVLV 281
              DP T K+L+ N+DPVFG+    +RFSW TA   ++K  A  V
Sbjct:   346 SDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEV 388


>UNIPROTKB|O75792 [details] [associations]
            symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9606
            "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0032299 "ribonuclease H2 complex" evidence=IDA]
            [GO:0004523 "ribonuclease H activity" evidence=IDA] [GO:0006260
            "DNA replication" evidence=TAS] [GO:0006401 "RNA catabolic process"
            evidence=IDA] [GO:0004540 "ribonuclease activity" evidence=TAS]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0005634 GO:GO:0046872
            GO:GO:0006260 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            EMBL:CH471106 GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290
            KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
            PANTHER:PTHR10954 TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585
            OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:Z97029 EMBL:AK315327
            EMBL:BC011748 IPI:IPI00290192 RefSeq:NP_006388.2 UniGene:Hs.532851
            PDB:3P56 PDB:3PUF PDBsum:3P56 PDBsum:3PUF ProteinModelPortal:O75792
            SMR:O75792 STRING:O75792 PhosphoSite:O75792 PaxDb:O75792
            PRIDE:O75792 DNASU:10535 Ensembl:ENST00000221486 GeneID:10535
            KEGG:hsa:10535 UCSC:uc002mvg.1 GeneCards:GC19P012918
            HGNC:HGNC:18518 HPA:HPA042692 MIM:606034 MIM:610333
            neXtProt:NX_O75792 Orphanet:51 PharmGKB:PA38565 InParanoid:O75792
            PhylomeDB:O75792 EvolutionaryTrace:O75792 GenomeRNAi:10535
            NextBio:39969 Bgee:O75792 CleanEx:HS_RNASEH2A Genevestigator:O75792
            GermOnline:ENSG00000104889 Uniprot:O75792
        Length = 299

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 101/206 (49%), Positives = 140/206 (67%)

Query:    73 LKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSH 132
             L+ L  ADSK L E +R+ +   + ++  ++GW ++++SPN+I  SML R KY+LN +SH
Sbjct:    60 LEALKVADSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSH 118

Query:   133 DAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA 192
             D A GLI+  +  GVNV +V+VDTVG PE+Y+ +L + FP + +TV  KA          
Sbjct:   119 DTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTV--KA---------- 166

Query:   193 IASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSEN 252
                KAD+ YPVV AASICAKV+RD A+K W F E +Q  +  +GSGYP DP TK +L E+
Sbjct:   167 ---KADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEH 223

Query:   253 IDPVFGFPQLVRFSWSTASKILKEKA 278
             ++PVFGFPQ VRFSW TA  IL+++A
Sbjct:   224 VEPVFGFPQFVRFSWRTAQTILEKEA 249

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 87/177 (49%), Positives = 123/177 (69%)

Query:    21 DNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCAD 80
             DN+    +SS +P  C+ +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  AD
Sbjct:     9 DNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVAD 67

Query:    81 SKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIR 140
             SK L E +R+ +   + ++  ++GW ++++SPN+I  SML R KY+LN +SHD A GLI+
Sbjct:    68 SKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQ 126

Query:   141 KVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA-IASK 196
               +  GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPVV AA I +K
Sbjct:   127 YALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183


>UNIPROTKB|G4MNH9 [details] [associations]
            symbol:MGG_06959 "Ribonuclease" species:242507 "Magnaporthe
            oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 EMBL:CM001231 GO:GO:0004523 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 RefSeq:XP_003709705.1 EnsemblFungi:MGG_06959T0
            GeneID:2685132 KEGG:mgr:MGG_06959 Uniprot:G4MNH9
        Length = 355

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 115/270 (42%), Positives = 149/270 (55%)

Query:    30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLG-CADSKALT 85
             S +P+S  S    PCVLG+DEAGRGPVLGPMVYG  Y P   ++ LL+      DSK LT
Sbjct:    42 SPVPDSLLSPSPVPCVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLT 101

Query:    86 EKKRDDILDSICKE---------NAWLGWMVEIISPNVICNSMLR---RQKYSLNEVSHD 133
                R  +++S+C           N+  GW +  +S   I   M+R      Y+LN  + D
Sbjct:   102 PAVRSSLMESLCTPTLSQSAGSLNSTCGWAISSLSARDIGAGMMRPATSAAYNLNAQALD 161

Query:   134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
             A + LI+ V+  GVNV E+YVDTVGPP +Y+KKL   FP   +TV SK            
Sbjct:   162 ATVSLIQGVMDRGVNVAEIYVDTVGPPAAYQKKLERFFPTAKVTV-SK------------ 208

Query:   194 ASKADSTYPVVGAASICAKVSRDSAL----KSWTFQ----EGIQIENNAWGSGYPGDPVT 245
               KADS YP V AAS+CAKV+RD+AL    K+   +    EG + E   WGSGYP D   
Sbjct:   209 --KADSLYPCVSAASVCAKVTRDAALEVLYKNVLSEIAKAEGGEDEEIGWGSGYPSDARC 266

Query:   246 KKFLSENIDPVFGFPQLVRFSWSTASKILK 275
               +L  N+ PVFG+    RFSW T   +L+
Sbjct:   267 VGWLKRNMHPVFGWGTECRFSWGTVKDMLE 296


>TAIR|locus:2040189 [details] [associations]
            symbol:AT2G25100 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=ISS] [GO:0004523 "ribonuclease H activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0016070 "RNA metabolic process" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 EMBL:AK117633
            EMBL:BT005597 EMBL:AY087961 IPI:IPI00547479 PIR:C84644
            RefSeq:NP_565584.1 UniGene:At.39066 ProteinModelPortal:Q9SEZ6
            SMR:Q9SEZ6 STRING:Q9SEZ6 PaxDb:Q9SEZ6 PRIDE:Q9SEZ6
            EnsemblPlants:AT2G25100.1 GeneID:817048 KEGG:ath:AT2G25100
            TAIR:At2g25100 eggNOG:COG0164 HOGENOM:HOG000100290
            InParanoid:Q9SEZ6 KO:K10743 OMA:WRTAQTI PhylomeDB:Q9SEZ6
            ProtClustDB:CLSN2688398 Genevestigator:Q9SEZ6 GermOnline:AT2G25100
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 Uniprot:Q9SEZ6
        Length = 296

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 107/248 (43%), Positives = 146/248 (58%)

Query:    73 LKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSH 132
             L +L  ADSK L E+KR+++ +S+ K +  LGW V++I P  +   ML + K +LNE+SH
Sbjct:    46 LASLHFADSKTLKEEKREELYESL-KLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISH 104

Query:   133 DAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAA 192
             ++A+GLI++V+  GV + E Y+DTVG P+ Y+ KLSE FP +   V SK           
Sbjct:   105 NSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVV-SK----------- 152

Query:   193 IASKADSTYPVVGAASICAKVSRDSALKSWTFQE-GIQIENNAWGSGYPGDPVTKKFLSE 251
                KADS +P+V  ASI AKV+RD ALK W  +E G  I  N +GSGYPGDP TK +L +
Sbjct:   153 ---KADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRN-FGSGYPGDPETKAWLVQ 208

Query:   252 NIDPVFGFPQLVRFSWSTASKILK-EKAVLVXXXXXXXXXXXXXNKKTRSIRNF-FKP-- 307
             +   VFGFP LVRFSW T +  LK E  V               +K+   + +F FK   
Sbjct:   209 HKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADENEESGNGSSSKRQAKLSSFGFKTCE 268

Query:   308 KADENVES 315
             K  E +ES
Sbjct:   269 KRSEEIES 276

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 82/160 (51%), Positives = 116/160 (72%)

Query:    38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
             SQPC++GIDEAGRGPVLGPMVYG  YCP  + +  L +L  ADSK L E+KR+++ +S+ 
Sbjct:    12 SQPCLMGIDEAGRGPVLGPMVYGCMYCPI-SYQSSLASLHFADSKTLKEEKREELYESL- 69

Query:    98 KENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTV 157
             K +  LGW V++I P  +   ML + K +LNE+SH++A+GLI++V+  GV + E Y+DTV
Sbjct:    70 KLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTV 129

Query:   158 GPPESYKKKLSEIFPELIITVASKADSTYPVV-GAAIASK 196
             G P+ Y+ KLSE FP +   V+ KADS +P+V GA+I +K
Sbjct:   130 GDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 169


>ASPGD|ASPL0000033104 [details] [associations]
            symbol:AN5114 species:162425 "Emericella nidulans"
            [GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 EMBL:BN001305
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
            EMBL:AACD01000088 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 OMA:IAEVYVD OrthoDB:EOG4HMNKD RefSeq:XP_662718.1
            ProteinModelPortal:Q5B2W6 STRING:Q5B2W6
            EnsemblFungi:CADANIAT00003098 GeneID:2871406 KEGG:ani:AN5114.2
            Uniprot:Q5B2W6
        Length = 339

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 107/259 (41%), Positives = 147/259 (56%)

Query:    27 IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELL-KNLGCADSKALT 85
             I + TI  + +    +LGIDEAGRGPVLGPMVY   Y P   +  LL +     DSK LT
Sbjct:    49 ISTQTIATNPEHDYLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLT 108

Query:    86 EKKRDDILDSICKENAWL----GWMVEIISPNVICNSMLRRQK--YSLNEVSHDAAIGLI 139
                R +++  +C + + L    GW  +++S   I + M+R     Y+LN  + DA I LI
Sbjct:   109 AGVRANLMRILCTQGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELI 168

Query:   140 RKVIAAG-VNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
             R V+    +NVREVY+DT+G P SY+KKL  +FP L ITVA KADS YP V AA +  A 
Sbjct:   169 RGVVEERKLNVREVYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAA-SVVAK 227

Query:   199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
              T  V  A  +C +V +++         G+    + WGSGYP D     ++  N+DPVFG
Sbjct:   228 VTRDV--ALDVCYEVLKENG--------GV---GDGWGSGYPSDSKCVGWMRTNMDPVFG 274

Query:   259 FPQLVRFSWSTASKILKEK 277
             +    RFSW TA ++L+ K
Sbjct:   275 WGNECRFSWGTAKEMLEVK 293


>POMBASE|SPAC4G9.02 [details] [associations]
            symbol:rnh201 "ribonuclease H2 complex subunit Rnh201
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
            evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006261
            "DNA-dependent DNA replication" evidence=ISO] [GO:0032299
            "ribonuclease H2 complex" evidence=ISO] [GO:0043137 "DNA
            replication, removal of RNA primer" evidence=IC] [GO:0046872 "metal
            ion binding" evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351
            PomBase:SPAC4G9.02 GO:GO:0005634 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003723
            SUPFAM:SSF53098 GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164
            HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            GO:GO:0032299 OMA:IAEVYVD PIR:T38861 RefSeq:NP_593684.1
            ProteinModelPortal:Q10236 STRING:Q10236 EnsemblFungi:SPAC4G9.02.1
            GeneID:2541542 KEGG:spo:SPAC4G9.02 OrthoDB:EOG4HMNKD
            NextBio:20802639 Uniprot:Q10236
        Length = 326

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 101/219 (46%), Positives = 129/219 (58%)

Query:     8 SNVTEVESCI-RSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPK 66
             S++T +   + +SN    N   S+   +  KSQP  LG+DEAGRGPVLGPMVY  AYCP 
Sbjct:    30 SSITFLPPSVNKSNPAKSNYYHSTVTDDISKSQPYRLGVDEAGRGPVLGPMVYAVAYCPV 89

Query:    67 DNNEELLKNLGCADSKALTEKKRDDILDSIC-KENAW---LGWMVEIISPNVICNSMLR- 121
             D +   L N G ADSK L   KR+++L  IC K N     +GW    IS   +   MLR 
Sbjct:    90 DFD---LTNYGFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISARELAAGMLRY 146

Query:   122 RQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASK 181
             R KY+LN  +HD  I LI+KV  +G+NV E+YVDTVGPP SY++KL   FP+  +TV  K
Sbjct:   147 RNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKK 206

Query:   182 ADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
             ADS +P+V  A               SICAKV+RD  L+
Sbjct:   207 ADSLFPIVSLA---------------SICAKVTRDIQLE 230

 Score = 243 (90.6 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 68/209 (32%), Positives = 111/209 (53%)

Query:    73 LKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSH 132
             L N G ADSK L   KR+++L  IC ++  LG        NV  ++M      S++  + 
Sbjct:    93 LTNYGFADSKTLASLKREELLKLICNKSNELG-------KNVGWSTM------SIS--AR 137

Query:   133 DAAIGLIRKVIAAGVNVR--EVYVDTVGPPESYKKKLSEIFPELI---ITVASKADSTYP 187
             + A G++R      +N++  +  +D +         ++EI+ + +   I+   K  + +P
Sbjct:   138 ELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFP 197

Query:   188 VVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKK 247
                  +  KADS +P+V  ASICAKV+RD  L+    +E I+ EN  WGSGY  D  T +
Sbjct:   198 QAKVTVTKKADSLFPIVSLASICAKVTRDIQLEC--ARESIRTEN--WGSGYSSDARTTE 253

Query:   248 FLSENIDPVFGFP-QLVRFSWSTASKILK 275
             +L  N+D +FG+   +VR+SW TA  +L+
Sbjct:   254 WLKVNVDKIFGWKGDIVRYSWKTAKDLLE 282


>SGD|S000005016 [details] [associations]
            symbol:RNH201 "Ribonuclease H2 catalytic subunit"
            species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] [GO:0032299
            "ribonuclease H2 complex" evidence=IDA] [GO:0004523 "ribonuclease H
            activity" evidence=IEA;ISS;IMP;IDA] [GO:0090305 "nucleic acid
            phosphodiester bond hydrolysis" evidence=IEA] [GO:0004519
            "endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0043137 "DNA replication, removal of RNA primer"
            evidence=IGI;IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
            metabolic process" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            SGD:S000005016 Pfam:PF01351 GO:GO:0005634 GO:GO:0005737
            GO:GO:0046872 EMBL:BK006947 GO:GO:0003723 SUPFAM:SSF53098
            GO:GO:0004523 EMBL:X86470 GO:GO:0043137 eggNOG:COG0164
            HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            GeneTree:ENSGT00390000010768 GO:GO:0032299 OMA:IAEVYVD
            OrthoDB:EOG4HMNKD EMBL:Z71348 PIR:S53908 RefSeq:NP_014327.1
            ProteinModelPortal:P53942 SMR:P53942 DIP:DIP-4565N IntAct:P53942
            MINT:MINT-532801 STRING:P53942 PaxDb:P53942 PeptideAtlas:P53942
            EnsemblFungi:YNL072W GeneID:855652 KEGG:sce:YNL072W CYGD:YNL072w
            NextBio:979902 Genevestigator:P53942 GermOnline:YNL072W
            Uniprot:P53942
        Length = 307

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 103/258 (39%), Positives = 139/258 (53%)

Query:    30 STIPESCKSQ---PCVLGIDEAGRGPVLGPMVYGTAYCP-KDNNEELLKNLGCADSKALT 85
             S +P +   Q   P ++GIDEAGRGPVLGPMVY  AY   K  +E ++ N    DSK LT
Sbjct:    20 SPVPSALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLT 79

Query:    86 EKKRDDILDSICKENAWL---GWMVEIISPNVICNSMLR---RQKYSLNEVSHDAAIGLI 139
             +  R  +   I ++N  L   G+    I+P  I   M +    + Y+LNE +HD  + LI
Sbjct:    80 DPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALI 139

Query:   140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
               VI   V +  VYVDTVGPP SY+KKL + FP +  TVA KADS Y +V  A       
Sbjct:   140 DGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVA------- 192

Query:   200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
                     S+ AKV+RD  ++S   ++  +I     GSGYP DP T  +L  N   + G+
Sbjct:   193 --------SVVAKVTRDILVESLK-RDPDEI----LGSGYPSDPKTVAWLKRNQTSLMGW 239

Query:   260 P-QLVRFSWSTASKILKE 276
             P  +VRFSW T   +L +
Sbjct:   240 PANMVRFSWQTCQTLLDD 257


>DICTYBASE|DDB_G0277705 [details] [associations]
            symbol:DDB_G0277705 species:44689 "Dictyostelium
            discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
            [GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
            hydrolysis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            dictyBase:DDB_G0277705 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 EMBL:AAFI02000021 GO:GO:0004523
            eggNOG:COG0164 Gene3D:1.10.10.460 InterPro:IPR024567
            PANTHER:PTHR10954 TIGRFAMs:TIGR00729 KO:K03470 RefSeq:XP_642511.1
            ProteinModelPortal:Q54ZA4 EnsemblProtists:DDB0218016 GeneID:8621159
            KEGG:ddi:DDB_G0277705 InParanoid:Q54ZA4 Uniprot:Q54ZA4
        Length = 507

 Score = 153 (58.9 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 55/180 (30%), Positives = 93/180 (51%)

Query:    43 LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
             + +DEAG+G +LGP+         D +E+ LK++G  DSK L+ K+R+ + D I  E+A 
Sbjct:   137 ISMDEAGKGALLGPLFISCVVLD-DESEKYLKSMGVTDSKKLSPKRREYLYDIII-EHA- 193

Query:   103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIA-AGVNVR-EVYVDTVGPP 160
             L +   I++   I     RR+ +++N++  +    LI+  I     N + ++ +D++   
Sbjct:   194 LYYQTIILTSEKIDQ---RRELHTMNQIETNLFYQLIKDSINNLPKNQQCKIIIDSI--- 247

Query:   161 ESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALK 220
             E   +K S+ F         K +   P+      +KAD  +  VGAASI AKV RD  +K
Sbjct:   248 EMNTQKYSQPF---------KMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDRWMK 298


>TIGR_CMR|SO_1643 [details] [associations]
            symbol:SO_1643 "ribonuclease HII" species:211586
            "Shewanella oneidensis MR-1" [GO:0004523 "ribonuclease H activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
            Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 GO:GO:0003723
            EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
            ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:NP_717254.1
            ProteinModelPortal:Q8EGG1 GeneID:1169437 KEGG:son:SO_1643
            PATRIC:23522920 Uniprot:Q8EGG1
        Length = 209

 Score = 121 (47.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 38/93 (40%), Positives = 51/93 (54%)

Query:    38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
             S   V G+DE GRGP++G +V  TA    D N  +L   G  DSK LTEK+R+ + D IC
Sbjct:    16 STSLVAGVDEVGRGPLVGDVV--TAAVILDPNRPIL---GLNDSKKLTEKRREALFDEIC 70

Query:    98 KENAWLGWMVEIISP------NVICNSMLRRQK 124
              E A L + V   SP      N++  +ML  Q+
Sbjct:    71 -EKA-LSFHVGRASPAEIDELNILHATMLAMQR 101

 Score = 55 (24.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query:   169 EIFPELIITVASKADSTYPVVGAAIAS----KADSTYPVVGAASICAKVSRD 216
             ++ P L++   +++ + +   G ++AS    K D     + AASI AKV+RD
Sbjct:   107 KLTPALVLVDGNRSPA-FTHQGLSLASHSIIKGDGLIASISAASIIAKVTRD 157


>TIGR_CMR|CPS_1569 [details] [associations]
            symbol:CPS_1569 "ribonuclease HII" species:167879
            "Colwellia psychrerythraea 34H" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
            HAMAP:MF_00052_B RefSeq:YP_268311.1 ProteinModelPortal:Q485F4
            STRING:Q485F4 GeneID:3519319 KEGG:cps:CPS_1569 PATRIC:21466343
            BioCyc:CPSY167879:GI48-1650-MONOMER Uniprot:Q485F4
        Length = 217

 Score = 116 (45.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 30/75 (40%), Positives = 40/75 (53%)

Query:    41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKEN 100
             C+ G+DE GRGP++G +V        DN  E     G  DSK L+EKKR+ +L    KE 
Sbjct:    17 CIAGVDEVGRGPLVGDVVTAAVILDPDNPIE-----GLMDSKKLSEKKRN-LLSLEIKEK 70

Query:   101 AWLGWMVEIISPNVI 115
             A + W +   SP  I
Sbjct:    71 A-ISWSLGRASPQEI 84

 Score = 56 (24.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query:   172 PELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
             P  +   +        +   A+  K D+    + AASI AKV+RD+ +
Sbjct:   119 PTFLCNASESNQQNLKIASQAVV-KGDARVTEISAASIIAKVARDNEM 165


>TIGR_CMR|APH_1022 [details] [associations]
            symbol:APH_1022 "ribonuclease HII" species:212042
            "Anaplasma phagocytophilum HZ" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 RefSeq:YP_505581.1 ProteinModelPortal:Q2GJ70
            STRING:Q2GJ70 GeneID:3930611 KEGG:aph:APH_1022 PATRIC:20950790
            HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA ProtClustDB:PRK00015
            BioCyc:APHA212042:GHPM-1029-MONOMER HAMAP:MF_00052_B Uniprot:Q2GJ70
        Length = 210

 Score = 117 (46.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
 Identities = 34/96 (35%), Positives = 47/96 (48%)

Query:    38 SQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSIC 97
             S   V+G+DE G G + GP+V    Y P D N E + N+   DSK LT KKRD +   + 
Sbjct:    14 SNAIVVGVDEVGYGSIAGPVVAAAVYIP-DRNVECIPNI--KDSKLLTPKKRDALYKELL 70

Query:    98 KENAW---LGWMVEIISPNVICNS--MLRRQKYSLN 128
                     L  + EI   N++  S   +RR   +LN
Sbjct:    71 SHTVCGTGLASIDEIEEHNILVASHMAMRRALENLN 106

 Score = 47 (21.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query:   204 VGAASICAKVSRDSALK 220
             + AASI AKV+RD+ ++
Sbjct:   140 IAAASIVAKVTRDNMMR 156


>TIGR_CMR|CJE_0009 [details] [associations]
            symbol:CJE_0009 "ribonuclease HII" species:195099
            "Campylobacter jejuni RM1221" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_178038.1
            ProteinModelPortal:Q5HXE7 STRING:Q5HXE7 DNASU:3230665
            GeneID:3230665 KEGG:cjr:CJE0009 PATRIC:20041707 OMA:GCSLANE
            BioCyc:CJEJ195099:GJC0-9-MONOMER Uniprot:Q5HXE7
        Length = 191

 Score = 107 (42.7 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query:    42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL-GCADSKALTEKKRDDILDSICKEN 100
             ++GIDEAGRG + GPM+   A C      +L K L G  DSK L+EKKR+++ + I K +
Sbjct:    18 LIGIDEAGRGALAGPMMM--AAC------KLNKQLDGLCDSKKLSEKKREELYEIIIKNS 69

Query:   101 AWL 103
              +L
Sbjct:    70 NYL 72

 Score = 56 (24.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query:   196 KADSTYPVVGAASICAKVSRDSAL 219
             KAD++   V AASI AKVS+D  +
Sbjct:   125 KADTSILQVSAASILAKVSKDRVM 148


>UNIPROTKB|P10442 [details] [associations]
            symbol:rnhB "RNAse HII,  degrades RNA of DNA-RNA hybrids"
            species:83333 "Escherichia coli K-12" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
            evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
            evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0004523 "ribonuclease H activity" evidence=IEA;IDA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            GO:GO:0046872 GO:GO:0003723 EMBL:U70214 EMBL:M19334 SUPFAM:SSF53098
            GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:G64742 RefSeq:NP_414725.1
            RefSeq:YP_488485.1 ProteinModelPortal:P10442 SMR:P10442
            IntAct:P10442 EnsemblBacteria:EBESCT00000003492
            EnsemblBacteria:EBESCT00000014844 GeneID:12932591 GeneID:944852
            KEGG:ecj:Y75_p0179 KEGG:eco:b0183 PATRIC:32115477 EchoBASE:EB0854
            EcoGene:EG10861 OMA:KEFTFSQ BioCyc:EcoCyc:EG10861-MONOMER
            BioCyc:ECOL316407:JW0178-MONOMER BioCyc:MetaCyc:EG10861-MONOMER
            BRENDA:3.1.26.4 Genevestigator:P10442 Uniprot:P10442
        Length = 198

 Score = 94 (38.1 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
 Identities = 33/89 (37%), Positives = 47/89 (52%)

Query:    42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
             V G+DE GRGP++G +V  TA    D    +    G  DSK L+EK+R  + + I KE A
Sbjct:    12 VAGVDEVGRGPLVGAVV--TAAVILDPARPIA---GLNDSKKLSEKRRLALYEEI-KEKA 65

Query:   102 WLGWMV------EIISPNVICNSMLRRQK 124
              L W +      EI   N++  +ML  Q+
Sbjct:    66 -LSWSLGRAEPHEIDELNILHATMLAMQR 93

 Score = 72 (30.4 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query:   170 IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
             I PE ++   ++     P+   A+  K DS  P + AASI AKV+RD+ +
Sbjct:   100 IAPEYVLIDGNRCPKL-PMPAMAVV-KGDSRVPEISAASILAKVTRDAEM 147


>UNIPROTKB|P52021 [details] [associations]
            symbol:rnhB "Ribonuclease HII" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0004523 EMBL:U30472
            eggNOG:COG0164 InterPro:IPR024567 PANTHER:PTHR10954 KO:K03470
            OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:H82100
            RefSeq:NP_231877.1 ProteinModelPortal:P52021 DNASU:2613168
            GeneID:2613168 KEGG:vch:VC2246 PATRIC:20083535 Uniprot:P52021
        Length = 206

 Score = 99 (39.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query:    42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
             + G+DE GRGP++G +V  TA    D N  ++   G  DSK L+EKKR  +   I +  A
Sbjct:    21 IAGVDEVGRGPLVGDVV--TAAVILDPNRPIM---GLNDSKKLSEKKRLALFPEI-QVKA 74

Query:   102 WLGWMVEIISPNVI 115
              L W V   SP  I
Sbjct:    75 -LAWAVGRCSPQEI 87

 Score = 59 (25.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query:   170 IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
             I P+L++   +K     P+   A+  K D     + AASI AKV RD  +++
Sbjct:   109 IQPDLVLIDGNKIPKL-PMEAQAVV-KGDLRVAQISAASIIAKVIRDQEMEA 158


>TIGR_CMR|VC_2246 [details] [associations]
            symbol:VC_2246 "ribonuclease HII" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
            Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0004523 EMBL:U30472
            eggNOG:COG0164 InterPro:IPR024567 PANTHER:PTHR10954 KO:K03470
            OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:H82100
            RefSeq:NP_231877.1 ProteinModelPortal:P52021 DNASU:2613168
            GeneID:2613168 KEGG:vch:VC2246 PATRIC:20083535 Uniprot:P52021
        Length = 206

 Score = 99 (39.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query:    42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
             + G+DE GRGP++G +V  TA    D N  ++   G  DSK L+EKKR  +   I +  A
Sbjct:    21 IAGVDEVGRGPLVGDVV--TAAVILDPNRPIM---GLNDSKKLSEKKRLALFPEI-QVKA 74

Query:   102 WLGWMVEIISPNVI 115
              L W V   SP  I
Sbjct:    75 -LAWAVGRCSPQEI 87

 Score = 59 (25.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query:   170 IFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKS 221
             I P+L++   +K     P+   A+  K D     + AASI AKV RD  +++
Sbjct:   109 IQPDLVLIDGNKIPKL-PMEAQAVV-KGDLRVAQISAASIIAKVIRDQEMEA 158


>TIGR_CMR|ECH_0946 [details] [associations]
            symbol:ECH_0946 "ribonuclease HII" species:205920
            "Ehrlichia chaffeensis str. Arkansas" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
            ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_507735.1
            ProteinModelPortal:Q2GFP8 STRING:Q2GFP8 GeneID:3927326
            KEGG:ech:ECH_0946 PATRIC:20577276
            BioCyc:ECHA205920:GJNR-949-MONOMER Uniprot:Q2GFP8
        Length = 209

 Score = 105 (42.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query:    28 ISSTIPESCKSQPC-VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTE 86
             I + I +   ++ C ++G+DE G G + GP+V    + PK +N  +  N+   DSK LT 
Sbjct:     6 IENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFPKHDNH-ITYNI--QDSKKLTP 62

Query:    87 KKRDDILDSICKENAWLGWMVEI 109
             KKR +I + I     W   + E+
Sbjct:    63 KKRLEIYNIITPMVKWSIGLAEV 85

 Score = 47 (21.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query:   204 VGAASICAKVSRDSALKSWTFQ 225
             + AASI AKV+RD  +++   Q
Sbjct:   142 IAAASIIAKVTRDKLMETLHIQ 163


>TIGR_CMR|CBU_1339 [details] [associations]
            symbol:CBU_1339 "ribonuclease HII" species:227377
            "Coxiella burnetii RSA 493" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
            Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 GO:GO:0003723
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            ProtClustDB:PRK00015 HAMAP:MF_00052_B OMA:GCSLANE
            RefSeq:NP_820328.1 ProteinModelPortal:Q83BZ8 PRIDE:Q83BZ8
            GeneID:1209245 KEGG:cbu:CBU_1339 PATRIC:17931415
            BioCyc:CBUR227377:GJ7S-1330-MONOMER Uniprot:Q83BZ8
        Length = 202

 Score = 112 (44.5 bits), Expect = 0.00035, P = 0.00035
 Identities = 33/94 (35%), Positives = 53/94 (56%)

Query:    42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI---CK 98
             + G+DEAGRGP+ GP++          N E++   G ADSK L+ KKR+++ + I   CK
Sbjct:    14 IAGVDEAGRGPLAGPVITAAVIL----NPEIIIE-GLADSKKLSLKKREELYEKIITNCK 68

Query:    99 ENAWLGWMVEIISP-NVICNSMLRRQKYSLNEVS 131
               A     VE I   N+   ++L  Q+ ++N++S
Sbjct:    69 AFAIARADVEEIDRLNIFRATLLAMQR-AINQLS 101


>TIGR_CMR|CHY_1426 [details] [associations]
            symbol:CHY_1426 "ribonuclease HII" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0004521
            "endoribonuclease activity" evidence=ISS] [GO:0006401 "RNA
            catabolic process" evidence=ISS] InterPro:IPR001352
            InterPro:IPR012337 InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737
            GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
            InterPro:IPR024567 PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            OMA:NRCPKLA HAMAP:MF_00052_B RefSeq:YP_360258.1
            ProteinModelPortal:Q3AC76 STRING:Q3AC76 GeneID:3727951
            KEGG:chy:CHY_1426 PATRIC:21275983
            BioCyc:CHYD246194:GJCN-1425-MONOMER Uniprot:Q3AC76
        Length = 231

 Score = 100 (40.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
 Identities = 36/109 (33%), Positives = 52/109 (47%)

Query:     8 SNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYC-PK 66
             +N+T V   +  N+   NL I + +  S      V G DEAGRGPV GP+V       P 
Sbjct:     9 ANITLVMKTL-DNNLPFNLQIENQLFSS--GYELVAGGDEAGRGPVAGPVVAAIVVIKPG 65

Query:    67 DNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVI 115
                 E+       DSK L+ KKR+ + + I   N    W V ++ P++I
Sbjct:    66 IYIPEV------DDSKKLSSKKREKLFEEII--NLVTDWSVAVVGPDLI 106

 Score = 50 (22.7 bits), Expect = 0.00058, Sum P(2) = 0.00058
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query:   170 IFPELIITVASKADSTYPVVGAAIAS-KADSTYPVVGAASICAKVSRDSALKSW 222
             I PE +I  A K        G  ++  KAD     V  ASI AKV RD  ++ +
Sbjct:   128 IKPEALILDALKLTG---FSGKQVSMVKADEISFAVACASILAKVIRDKIMEQY 178


>TIGR_CMR|GSU_0649 [details] [associations]
            symbol:GSU_0649 "ribonuclease HII" species:243231
            "Geobacter sulfurreducens PCA" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
            ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:NP_951706.1
            ProteinModelPortal:Q74FG0 GeneID:2687304 KEGG:gsu:GSU0649
            PATRIC:22024045 BioCyc:GSUL243231:GH27-659-MONOMER Uniprot:Q74FG0
        Length = 217

 Score = 94 (38.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
 Identities = 23/55 (41%), Positives = 29/55 (52%)

Query:    42 VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSI 96
             + GIDEAGRGP+ GP+V      P   +       G  DSK LT  +RDD+   I
Sbjct:    29 IAGIDEAGRGPLAGPVVAAAVILPFGTDLP-----GVDDSKKLTPARRDDLFTLI 78

 Score = 55 (24.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query:   187 PVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
             PV    I  K DS    + AASI AKV+RD  +  +
Sbjct:   133 PVAQQTI-KKGDSASISIAAASIIAKVTRDRLMAEY 167


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      401       388   0.00093  117 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  31
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  246 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.83u 0.09s 31.92t   Elapsed:  00:00:18
  Total cpu time:  31.84u 0.09s 31.93t   Elapsed:  00:00:18
  Start:  Thu Aug 15 13:31:09 2013   End:  Thu Aug 15 13:31:27 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with CG13690 CG13690 CG13690	protein from Drosophila melanogaster	3.8e-78
BLAST match view associations BLAST with rnaseh2a rnaseh2a rnaseh2a ribonuclease H2, subunit A	gene_product from Danio rerio	1.0e-68
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Bos taurus	7.6e-64
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Canis lupus familiaris	4.2e-63
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Sus scrofa	1.1e-62
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, large subunit	protein from Mus musculus	2.3e-62
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, subunit A	gene from Rattus norvegicus	7.9e-62
BLAST match view associations BLAST with rnh-2 rnh-2 rnh-2	gene from Caenorhabditis elegans	1.9e-58
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w ribonuclease H1 large subunit, putative	gene from Plasmodium falciparum	5.3e-56
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w Ribonuclease	protein from Plasmodium falciparum 3D7	5.3e-56
BLAST match view associations BLAST with rnaseh2A rnaseh2A rnaseh2A ribonuclease H2 subunit A	gene from Dictyostelium discoideum	2.0e-49
BLAST match view associations BLAST with RNH35 RNH35 RNH35	gene_product from Candida albicans	6.9e-47
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Homo sapiens	1.8e-46
BLAST match view associations BLAST with MGG_06959 MGG_06959 MGG_06959 Ribonuclease	protein from Magnaporthe oryzae 70-15	2.5e-42
BLAST match view associations BLAST with AT2G25100 AT2G25100 AT2G25100	protein from Arabidopsis thaliana	1.7e-41
BLAST match view associations BLAST with RNH201 RNH201 RNH201 Ribonuclease H2 catalytic subunit	gene from Saccharomyces cerevisiae	1.5e-35
BLAST match view associations BLAST with DDB_G0277705 DDB_G0277705 DDB_G0277705	gene from Dictyostelium discoideum	7.3e-08
BLAST match view associations BLAST with SO_1643 SO_1643 SO_1643 ribonuclease HII	protein from Shewanella oneidensis MR-1	2.3e-07
BLAST match view associations BLAST with CPS_1569 CPS_1569 CPS_1569 ribonuclease HII	protein from Colwellia psychrerythraea 34H	1.1e-06
BLAST match view associations BLAST with APH_1022 APH_1022 APH_1022 ribonuclease HII	protein from Anaplasma phagocytophilum str. HZ	5.5e-06
BLAST match view associations BLAST with CJE_0009 CJE_0009 CJE_0009 ribonuclease HII	protein from Campylobacter jejuni RM1221	6.1e-06
BLAST match view associations BLAST with rnhB rnhB rnhB RNAse HII, degrades RNA of DNA-RNA hybrids	protein from Escherichia coli K-12	8.1e-06
BLAST match view associations BLAST with rnhB rnhB rnhB Ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.2e-05
BLAST match view associations BLAST with VC_2246 VC_2246 VC_2246 ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor	5.2e-05
BLAST match view associations BLAST with ECH_0946 ECH_0946 ECH_0946 ribonuclease HII	protein from Ehrlichia chaffeensis str. Arkansas	0.00017
BLAST match view associations BLAST with CBU_1339 CBU_1339 CBU_1339 ribonuclease HII	protein from Coxiella burnetii RSA 493	0.00035
BLAST match view associations BLAST with CHY_1426 CHY_1426 CHY_1426 ribonuclease HII	protein from Carboxydothermus hydrogenoformans Z-2901	0.00058
BLAST match view associations BLAST with GSU_0649 GSU_0649 GSU_0649 ribonuclease HII	protein from Geobacter sulfurreducens PCA	0.00069